Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060840 | KEH41747.1 | 59.677 | 186 | 32 | 1 | 1 | 143 | 1 | 186 | 3.24e-68 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060840 | A0A072VIV5 | 59.677 | 186 | 32 | 1 | 1 | 143 | 1 | 186 | 1.55e-68 | 216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa1060840 | 0.815995 | 6.944564e-52 | -8.615850e-47 |
| Msa0016570 | Msa1060840 | 0.808072 | 3.706095e-50 | -8.615850e-47 |
| Msa0092630 | Msa1060840 | 0.825789 | 3.870858e-54 | -8.615850e-47 |
| Msa0102070 | Msa1060840 | 0.860066 | 2.676585e-63 | -8.615850e-47 |
| Msa0111510 | Msa1060840 | 0.816898 | 4.360141e-52 | -8.615850e-47 |
| Msa0120300 | Msa1060840 | 0.801308 | 9.572481e-49 | -8.615850e-47 |
| Msa0636170 | Msa1060840 | 0.811795 | 5.854224e-51 | -8.615850e-47 |
| Msa0639610 | Msa1060840 | 0.820173 | 7.888789e-53 | -8.615850e-47 |
| Msa0647170 | Msa1060840 | 0.808342 | 3.246499e-50 | -8.615850e-47 |
| Msa0650630 | Msa1060840 | 0.831035 | 2.096928e-55 | -8.615850e-47 |
| Msa0678930 | Msa1060840 | 0.813118 | 3.008929e-51 | -8.615850e-47 |
| Msa0701010 | Msa1060840 | 0.822697 | 2.062294e-53 | -8.615850e-47 |
| Msa0703120 | Msa1060840 | 0.803776 | 2.966058e-49 | -8.615850e-47 |
| Msa0725850 | Msa1060840 | 0.824826 | 6.539168e-54 | -8.615850e-47 |
| Msa0726140 | Msa1060840 | 0.844185 | 8.842546e-59 | -8.615850e-47 |
| Msa0729800 | Msa1060840 | 0.842265 | 2.873516e-58 | -8.615850e-47 |
| Msa0731560 | Msa1060840 | 0.833891 | 4.108647e-56 | -8.615850e-47 |
| Msa0732310 | Msa1060840 | 0.841330 | 5.073742e-58 | -8.615850e-47 |
| Msa0732710 | Msa1060840 | 0.806071 | 9.830868e-50 | -8.615850e-47 |
| Msa0733290 | Msa1060840 | 0.809951 | 1.467689e-50 | -8.615850e-47 |
| Msa0738490 | Msa1060840 | 0.802223 | 6.211629e-49 | -8.615850e-47 |
| Msa0743810 | Msa1060840 | 0.876822 | 1.028107e-68 | -8.615850e-47 |
| Msa0745060 | Msa1060840 | 0.859510 | 3.935794e-63 | -8.615850e-47 |
| Msa0748970 | Msa1060840 | 0.804967 | 1.674803e-49 | -8.615850e-47 |
| Msa0766630 | Msa1060840 | 0.805489 | 1.302573e-49 | -8.615850e-47 |
| Msa0767720 | Msa1060840 | 0.810438 | 1.152826e-50 | -8.615850e-47 |
| Msa0768290 | Msa1060840 | 0.834014 | 3.828056e-56 | -8.615850e-47 |
| Msa0768370 | Msa1060840 | 0.852812 | 3.610363e-61 | -8.615850e-47 |
| Msa0777870 | Msa1060840 | 0.814065 | 1.862022e-51 | -8.615850e-47 |
| Msa0779880 | Msa1060840 | 0.811234 | 7.753475e-51 | -8.615850e-47 |
| Msa0783160 | Msa1060840 | 0.871722 | 5.503045e-67 | -8.615850e-47 |
| Msa0784290 | Msa1060840 | 0.848304 | 6.674258e-60 | -8.615850e-47 |
| Msa0787600 | Msa1060840 | 0.846953 | 1.570566e-59 | -8.615850e-47 |
| Msa0808010 | Msa1060840 | 0.851687 | 7.547577e-61 | -8.615850e-47 |
| Msa0808020 | Msa1060840 | 0.843226 | 1.596608e-58 | -8.615850e-47 |
| Msa0811270 | Msa1060840 | 0.812734 | 3.652022e-51 | -8.615850e-47 |
| Msa0824590 | Msa1060840 | 0.813533 | 2.439389e-51 | -8.615850e-47 |
| Msa0824600 | Msa1060840 | 0.815699 | 8.087164e-52 | -8.615850e-47 |
| Msa0825860 | Msa1060840 | 0.865906 | 4.204355e-65 | -8.615850e-47 |
| Msa0833290 | Msa1060840 | 0.855937 | 4.511270e-62 | -8.615850e-47 |
| Msa0833300 | Msa1060840 | 0.809869 | 1.528411e-50 | -8.615850e-47 |
| Msa0123810 | Msa1060840 | 0.835205 | 1.921420e-56 | -8.615850e-47 |
| Msa0142220 | Msa1060840 | 0.820572 | 6.390785e-53 | -8.615850e-47 |
| Msa0145750 | Msa1060840 | 0.823139 | 1.627091e-53 | -8.615850e-47 |
| Msa0153910 | Msa1060840 | 0.855835 | 4.830879e-62 | -8.615850e-47 |
| Msa0198910 | Msa1060840 | 0.820680 | 6.033935e-53 | -8.615850e-47 |
| Msa0200000 | Msa1060840 | 0.814954 | 1.184343e-51 | -8.615850e-47 |
| Msa0227480 | Msa1060840 | 0.861960 | 7.105823e-64 | -8.615850e-47 |
| Msa0231000 | Msa1060840 | 0.806821 | 6.828756e-50 | -8.615850e-47 |
| Msa0232850 | Msa1060840 | 0.830166 | 3.422802e-55 | -8.615850e-47 |
| Msa0233080 | Msa1060840 | 0.801451 | 8.947406e-49 | -8.615850e-47 |
| Msa0365500 | Msa1060840 | 0.842131 | 3.117466e-58 | -8.615850e-47 |
| Msa0384800 | Msa1060840 | 0.826071 | 3.317018e-54 | -8.615850e-47 |
| Msa0391180 | Msa1060840 | 0.800126 | 1.668002e-48 | -8.615850e-47 |
| Msa0394970 | Msa1060840 | 0.802220 | 6.219775e-49 | -8.615850e-47 |
| Msa0406120 | Msa1060840 | 0.817929 | 2.555036e-52 | -8.615850e-47 |
| Msa0407750 | Msa1060840 | 0.809090 | 2.246394e-50 | -8.615850e-47 |
| Msa0414410 | Msa1060840 | 0.839319 | 1.701451e-57 | -8.615850e-47 |
| Msa0414420 | Msa1060840 | 0.886322 | 3.781784e-72 | -8.615850e-47 |
| Msa0424320 | Msa1060840 | 0.824508 | 7.771941e-54 | -8.615850e-47 |
| Msa0434000 | Msa1060840 | 0.800422 | 1.451951e-48 | -8.615850e-47 |
| Msa0435230 | Msa1060840 | 0.806415 | 8.318478e-50 | -8.615850e-47 |
| Msa0436780 | Msa1060840 | 0.861207 | 1.206297e-63 | -8.615850e-47 |
| Msa0436800 | Msa1060840 | 0.813909 | 2.016247e-51 | -8.615850e-47 |
| Msa0438620 | Msa1060840 | 0.816832 | 4.511540e-52 | -8.615850e-47 |
| Msa0444130 | Msa1060840 | 0.810515 | 1.109422e-50 | -8.615850e-47 |
| Msa0450000 | Msa1060840 | 0.866360 | 3.018220e-65 | -8.615850e-47 |
| Msa0450570 | Msa1060840 | 0.823341 | 1.458988e-53 | -8.615850e-47 |
| Msa0451730 | Msa1060840 | 0.825969 | 3.506716e-54 | -8.615850e-47 |
| Msa0452900 | Msa1060840 | 0.890767 | 7.311867e-74 | -8.615850e-47 |
| Msa0453120 | Msa1060840 | 0.862270 | 5.707983e-64 | -8.615850e-47 |
| Msa0454370 | Msa1060840 | 0.809044 | 2.298229e-50 | -8.615850e-47 |
| Msa0454910 | Msa1060840 | 0.812197 | 4.785596e-51 | -8.615850e-47 |
| Msa0459160 | Msa1060840 | 0.834130 | 3.581446e-56 | -8.615850e-47 |
| Msa0459170 | Msa1060840 | 0.834105 | 3.633010e-56 | -8.615850e-47 |
| Msa0979850 | Msa1060840 | 0.805455 | 1.323890e-49 | -8.615850e-47 |
| Msa0981270 | Msa1060840 | 0.828795 | 7.371525e-55 | -8.615850e-47 |
| Msa0981370 | Msa1060840 | 0.821180 | 4.630166e-53 | -8.615850e-47 |
| Msa0986360 | Msa1060840 | 0.829209 | 5.850292e-55 | -8.615850e-47 |
| Msa0986400 | Msa1060840 | 0.803869 | 2.837035e-49 | -8.615850e-47 |
| Msa0989060 | Msa1060840 | 0.833163 | 6.243788e-56 | -8.615850e-47 |
| Msa0998690 | Msa1060840 | 0.815294 | 9.949719e-52 | -8.615850e-47 |
| Msa1000890 | Msa1060840 | 0.811292 | 7.530116e-51 | -8.615850e-47 |
| Msa1000900 | Msa1060840 | 0.825358 | 4.895607e-54 | -8.615850e-47 |
| Msa1014540 | Msa1060840 | 0.811959 | 5.391760e-51 | -8.615850e-47 |
| Msa1016280 | Msa1060840 | 0.889553 | 2.184878e-73 | -8.615850e-47 |
| Msa1024240 | Msa1060840 | 0.824373 | 8.362894e-54 | -8.615850e-47 |
| Msa1025360 | Msa1060840 | 0.902261 | 1.160963e-78 | -8.615850e-47 |
| Msa1025370 | Msa1060840 | 0.890905 | 6.452563e-74 | -8.615850e-47 |
| Msa1028230 | Msa1060840 | 0.838008 | 3.711150e-57 | -8.615850e-47 |
| Msa1044830 | Msa1060840 | 0.893045 | 9.055274e-75 | -8.615850e-47 |
| Msa1044840 | Msa1060840 | 0.904102 | 1.743078e-79 | -8.615850e-47 |
| Msa1060840 | Msa1068420 | 0.820068 | 8.336788e-53 | -8.615850e-47 |
| Msa1060840 | Msa1092990 | 0.843679 | 1.208209e-58 | -8.615850e-47 |
| Msa1060840 | Msa1099970 | 0.806282 | 8.871479e-50 | -8.615850e-47 |
| Msa1060840 | Msa1100980 | 0.874952 | 4.516450e-68 | -8.615850e-47 |
| Msa1060840 | Msa1109440 | 0.887701 | 1.132037e-72 | -8.615850e-47 |
| Msa1060840 | Msa1112300 | 0.832039 | 1.186419e-55 | -8.615850e-47 |
| Msa1060840 | Msa1121200 | 0.842900 | 1.949224e-58 | -8.615850e-47 |
| Msa1060840 | Msa1121480 | 0.818753 | 1.663221e-52 | -8.615850e-47 |
| Msa1060840 | Msa1135740 | 0.854945 | 8.775138e-62 | -8.615850e-47 |
| Msa1060840 | Msa1136090 | 0.834124 | 3.592600e-56 | -8.615850e-47 |
| Msa1060840 | Msa1139680 | 0.817813 | 2.713975e-52 | -8.615850e-47 |
| Msa1060840 | Msa1146110 | 0.841782 | 3.855967e-58 | -8.615850e-47 |
| Msa1060840 | Msa1149360 | 0.926757 | 3.021543e-91 | -8.615850e-47 |
| Msa1060840 | Msa1150370 | 0.869055 | 4.122682e-66 | -8.615850e-47 |
| Msa1060840 | Msa1173920 | 0.844006 | 9.872872e-59 | -8.615850e-47 |
| Msa1060840 | Msa1182090 | 0.830055 | 3.642340e-55 | -8.615850e-47 |
| Msa1060840 | Msa1184420 | 0.839976 | 1.147707e-57 | -8.615850e-47 |
| Msa1060840 | Msa1187940 | 0.839675 | 1.374957e-57 | -8.615850e-47 |
| Msa1060840 | Msa1187950 | 0.834218 | 3.403738e-56 | -8.615850e-47 |
| Msa1060840 | Msa1192640 | 0.860949 | 1.445472e-63 | -8.615850e-47 |
| Msa1060840 | Msa1193730 | 0.814237 | 1.706544e-51 | -8.615850e-47 |
| Msa1060840 | Msa1230430 | 0.840166 | 1.024175e-57 | -8.615850e-47 |
| Msa1060840 | Msa1246880 | 0.831736 | 1.409623e-55 | -8.615850e-47 |
| Msa1060840 | Msa1248300 | 0.817261 | 3.614948e-52 | -8.615850e-47 |
| Msa1060840 | Msa1248310 | 0.832002 | 1.211962e-55 | -8.615850e-47 |
| Msa1060840 | Msa1248370 | 0.819894 | 9.138896e-53 | -8.615850e-47 |
| Msa1060840 | Msa1269670 | 0.859174 | 4.963036e-63 | -8.615850e-47 |
| Msa1060840 | Msa1270230 | 0.877716 | 5.028258e-69 | -8.615850e-47 |
| Msa1060840 | Msa1270240 | 0.848909 | 4.538471e-60 | -8.615850e-47 |
| Msa1060840 | Msa1270270 | 0.840186 | 1.011933e-57 | -8.615850e-47 |
| Msa1060840 | Msa1273230 | 0.857695 | 1.369506e-62 | -8.615850e-47 |
| Msa1060840 | Msa1283330 | 0.881277 | 2.742982e-70 | -8.615850e-47 |
| Msa1060840 | Msa1284680 | 0.807755 | 4.329188e-50 | -8.615850e-47 |
| Msa1060840 | Msa1285930 | 0.869517 | 2.917324e-66 | -8.615850e-47 |
| Msa1060840 | Msa1287800 | 0.871602 | 6.029241e-67 | -8.615850e-47 |
| Msa1060840 | Msa1287810 | 0.886883 | 2.319867e-72 | -8.615850e-47 |
| Msa1060840 | Msa1288560 | 0.824429 | 8.109676e-54 | -8.615850e-47 |
| Msa1060840 | Msa1289420 | 0.846805 | 1.724034e-59 | -8.615850e-47 |
| Msa1060840 | Msa1289430 | 0.834550 | 2.809855e-56 | -8.615850e-47 |
| Msa1060840 | Msa1305480 | 0.815013 | 1.148769e-51 | -8.615850e-47 |
| Msa1060840 | Msa1307890 | 0.866054 | 3.773619e-65 | -8.615850e-47 |
| Msa1060840 | Msa1310120 | 0.829622 | 4.644220e-55 | -8.615850e-47 |
| Msa1060840 | Msa1320300 | 0.818290 | 2.117154e-52 | -8.615850e-47 |
| Msa1060840 | Msa1321560 | 0.810442 | 1.150307e-50 | -8.615850e-47 |
| Msa1060840 | Msa1340590 | 0.818036 | 2.417577e-52 | -8.615850e-47 |
| Msa1060840 | Msa1366810 | 0.828211 | 1.019957e-54 | -8.615850e-47 |
| Msa1060840 | Msa1369430 | 0.818512 | 1.886196e-52 | -8.615850e-47 |
| Msa1060840 | Msa1397150 | 0.824585 | 7.451993e-54 | -8.615850e-47 |
| Msa1060840 | Msa1397580 | 0.828637 | 8.048551e-55 | -8.615850e-47 |
| Msa1060840 | Msa1400720 | 0.831068 | 2.058644e-55 | -8.615850e-47 |
| Msa1060840 | Msa1402790 | 0.845818 | 3.204168e-59 | -8.615850e-47 |
| Msa1060840 | Msa1404000 | 0.856739 | 2.623916e-62 | -8.615850e-47 |
| Msa1060840 | Msa1408780 | 0.833723 | 4.526185e-56 | -8.615850e-47 |
| Msa1060840 | Msa1410680 | 0.801919 | 7.174746e-49 | -8.615850e-47 |
| Msa1060840 | Msa1415310 | 0.858172 | 9.889019e-63 | -8.615850e-47 |
| Msa1060840 | Msa1422180 | 0.832615 | 8.542109e-56 | -8.615850e-47 |
| Msa1060840 | Msa1433120 | 0.833792 | 4.349889e-56 | -8.615850e-47 |
| Msa0251320 | Msa1060840 | 0.848422 | 6.190491e-60 | -8.615850e-47 |
| Msa0251640 | Msa1060840 | 0.814084 | 1.844704e-51 | -8.615850e-47 |
| Msa0267000 | Msa1060840 | 0.886457 | 3.364888e-72 | -8.615850e-47 |
| Msa0267010 | Msa1060840 | 0.895193 | 1.209504e-75 | -8.615850e-47 |
| Msa0285810 | Msa1060840 | 0.821671 | 3.566824e-53 | -8.615850e-47 |
| Msa0304170 | Msa1060840 | 0.806152 | 9.450632e-50 | -8.615850e-47 |
| Msa0313760 | Msa1060840 | 0.807460 | 5.001796e-50 | -8.615850e-47 |
| Msa0337900 | Msa1060840 | 0.804080 | 2.564146e-49 | -8.615850e-47 |
| Msa0342240 | Msa1060840 | 0.863193 | 2.964716e-64 | -8.615850e-47 |
| Msa0360510 | Msa1060840 | 0.832027 | 1.194964e-55 | -8.615850e-47 |
| Msa0485030 | Msa1060840 | 0.829465 | 5.071672e-55 | -8.615850e-47 |
| Msa0491590 | Msa1060840 | 0.846097 | 2.689815e-59 | -8.615850e-47 |
| Msa0506270 | Msa1060840 | 0.847650 | 1.010870e-59 | -8.615850e-47 |
| Msa0523940 | Msa1060840 | 0.812136 | 4.935422e-51 | -8.615850e-47 |
| Msa0534540 | Msa1060840 | 0.838394 | 2.951219e-57 | -8.615850e-47 |
| Msa0564890 | Msa1060840 | 0.868882 | 4.690930e-66 | -8.615850e-47 |
| Msa0596150 | Msa1060840 | 0.800497 | 1.401551e-48 | -8.615850e-47 |
| Msa0844490 | Msa1060840 | 0.824995 | 5.965226e-54 | -8.615850e-47 |
| Msa0844500 | Msa1060840 | 0.800507 | 1.395205e-48 | -8.615850e-47 |
| Msa0845930 | Msa1060840 | 0.810621 | 1.052185e-50 | -8.615850e-47 |
| Msa0846330 | Msa1060840 | 0.857937 | 1.160892e-62 | -8.615850e-47 |
| Msa0846350 | Msa1060840 | 0.836301 | 1.013810e-56 | -8.615850e-47 |
| Msa0848960 | Msa1060840 | 0.824607 | 7.366571e-54 | -8.615850e-47 |
| Msa0854980 | Msa1060840 | 0.815972 | 7.027437e-52 | -8.615850e-47 |
| Msa0857680 | Msa1060840 | 0.802807 | 4.707224e-49 | -8.615850e-47 |
| Msa0858980 | Msa1060840 | 0.823484 | 1.351208e-53 | -8.615850e-47 |
| Msa0864070 | Msa1060840 | 0.807453 | 5.018245e-50 | -8.615850e-47 |
| Msa0865320 | Msa1060840 | 0.845828 | 3.182794e-59 | -8.615850e-47 |
| Msa0872230 | Msa1060840 | 0.844696 | 6.442863e-59 | -8.615850e-47 |
| Msa0877250 | Msa1060840 | 0.850105 | 2.105682e-60 | -8.615850e-47 |
| Msa0884150 | Msa1060840 | 0.824525 | 7.700568e-54 | -8.615850e-47 |
| Msa0885290 | Msa1060840 | 0.841973 | 3.432605e-58 | -8.615850e-47 |
| Msa0888370 | Msa1060840 | 0.831813 | 1.348912e-55 | -8.615850e-47 |
| Msa0888420 | Msa1060840 | 0.860713 | 1.704835e-63 | -8.615850e-47 |
| Msa0895270 | Msa1060840 | 0.806596 | 7.618516e-50 | -8.615850e-47 |
| Msa0896080 | Msa1060840 | 0.800903 | 1.158249e-48 | -8.615850e-47 |
| Msa0899430 | Msa1060840 | 0.856214 | 3.743456e-62 | -8.615850e-47 |
| Msa0899450 | Msa1060840 | 0.841152 | 5.650206e-58 | -8.615850e-47 |
| Msa0901070 | Msa1060840 | 0.802842 | 4.630989e-49 | -8.615850e-47 |
| Msa0907260 | Msa1060840 | 0.828311 | 9.645789e-55 | -8.615850e-47 |
| Msa0914760 | Msa1060840 | 0.845588 | 3.699052e-59 | -8.615850e-47 |
| Msa0924050 | Msa1060840 | 0.801311 | 9.558064e-49 | -8.615850e-47 |
| Msa0927380 | Msa1060840 | 0.802596 | 5.203712e-49 | -8.615850e-47 |
| Msa0928820 | Msa1060840 | 0.809889 | 1.513523e-50 | -8.615850e-47 |
| Msa0952720 | Msa1060840 | 0.844745 | 6.250667e-59 | -8.615850e-47 |
| Msa0953120 | Msa1060840 | 0.805706 | 1.172941e-49 | -8.615850e-47 |
| Msa0956270 | Msa1060840 | 0.852306 | 5.035064e-61 | -8.615850e-47 |
| Msa0958550 | Msa1060840 | 0.850280 | 1.880368e-60 | -8.615850e-47 |
| Msa0966750 | Msa1060840 | 0.815445 | 9.212993e-52 | -8.615850e-47 |
| Msa0966760 | Msa1060840 | 0.803301 | 3.720874e-49 | -8.615850e-47 |
| Msa0967280 | Msa1060840 | 0.802862 | 4.586266e-49 | -8.615850e-47 |
| Msa0974080 | Msa1060840 | 0.807098 | 5.965612e-50 | -8.615850e-47 |
| Msa0974870 | Msa1060840 | 0.821073 | 4.902189e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060840 | MtrunA17_Chr1g0172351 | 77.143 | 70 | 16 | 0 | 99 | 168 | 77 | 146 | 1.98e-35 | 122 |
| Msa1060840 | MtrunA17_Chr4g0044671 | 25.229 | 218 | 118 | 2 | 1 | 175 | 1 | 216 | 1.51e-21 | 87.8 |
| Msa1060840 | MtrunA17_Chr4g0034781 | 25.472 | 212 | 113 | 2 | 7 | 175 | 1 | 210 | 3.86e-20 | 84.0 |
| Msa1060840 | MtrunA17_Chr1g0175581 | 50.000 | 78 | 39 | 0 | 88 | 165 | 29 | 106 | 8.36e-20 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGGTTGGACTGAGTTTA+AGG | 0.185372 | 7_2:+49533070 | Msa1060840:CDS |
| GGAAAACTTACAACACAATT+TGG | 0.198179 | 7_2:+49533491 | Msa1060840:CDS |
| CAGCAAGTTGATGACGAATT+TGG | 0.199887 | 7_2:+49533377 | Msa1060840:intron |
| TGGCAATGAAGAGAAATTTA+AGG | 0.284538 | 7_2:+49533451 | Msa1060840:CDS |
| GGAATGTATCTCAAGCAATA+TGG | 0.328623 | 7_2:+49533398 | Msa1060840:CDS |
| ATAAAACTTTGTGCTGATAA+TGG | 0.338821 | 7_2:+49533431 | Msa1060840:CDS |
| TAGCTAATCTATCACGTTCA+TGG | 0.343597 | 7_2:+49532976 | Msa1060840:CDS |
| TCAATTTGAAGCGTATTGTT+TGG | 0.372308 | 7_2:-49533559 | None:intergenic |
| AAGGTGTATTTACTTAATGA+TGG | 0.416212 | 7_2:+49533470 | Msa1060840:CDS |
| AGTTGTCAAGGTTGCAGAGC+AGG | 0.420128 | 7_2:+49532800 | Msa1060840:CDS |
| TCTCAAGCAATATGGTTTCC+AGG | 0.423438 | 7_2:+49533406 | Msa1060840:CDS |
| TTGGCCAACTCTGAAGTTGT+TGG | 0.427754 | 7_2:-49533540 | None:intergenic |
| AAAACAATTTCAACATTGTC+AGG | 0.431374 | 7_2:-49533107 | None:intergenic |
| AAATTTGTCTTCACAAAAGC+TGG | 0.439036 | 7_2:-49532954 | None:intergenic |
| CTACGGTAATAATATGTTCT+CGG | 0.473564 | 7_2:+49533136 | Msa1060840:CDS |
| TTTAACTTTCAACAAAAGCT+TGG | 0.486750 | 7_2:+49533031 | Msa1060840:CDS |
| GAAGCAATGGAAGATGAAGC+AGG | 0.524686 | 7_2:-49533625 | None:intergenic |
| TCCATTGCTTCTGCTTAGTG+AGG | 0.525648 | 7_2:+49533637 | Msa1060840:CDS |
| TGAATATTTCTCAGTTGTCA+AGG | 0.527274 | 7_2:+49532788 | Msa1060840:CDS |
| CAACACAATTTGGAATCCTG+TGG | 0.534831 | 7_2:+49533501 | Msa1060840:CDS |
| ACCCCATGTTAACACATGGT+TGG | 0.537028 | 7_2:+49533057 | Msa1060840:CDS |
| AGTCCAACCATGTGTTAACA+TGG | 0.542552 | 7_2:-49533060 | None:intergenic |
| AGCAATGGAAGATGAAGCAG+GGG | 0.564179 | 7_2:-49533623 | None:intergenic |
| AACACAATTTGGAATCCTGT+GGG | 0.587367 | 7_2:+49533502 | Msa1060840:CDS |
| ACCTCACTAAGCAGAAGCAA+TGG | 0.589982 | 7_2:-49533638 | None:intergenic |
| GTCCAACCATGTGTTAACAT+GGG | 0.594446 | 7_2:-49533059 | None:intergenic |
| TCTTGCAGAAATGATCCCAC+AGG | 0.594556 | 7_2:-49533517 | None:intergenic |
| AAGACCAACAACTTCAGAGT+TGG | 0.597015 | 7_2:+49533536 | Msa1060840:CDS |
| AAGCAATGGAAGATGAAGCA+GGG | 0.606092 | 7_2:-49533624 | None:intergenic |
| GTTAACCCCATGTTAACACA+TGG | 0.616537 | 7_2:+49533053 | Msa1060840:CDS |
| CAACTGAGAAATATTCAAGC+GGG | 0.617358 | 7_2:-49532782 | None:intergenic |
| TCCAACCATGTGTTAACATG+GGG | 0.650672 | 7_2:-49533058 | None:intergenic |
| ACAACTGAGAAATATTCAAG+CGG | 0.670299 | 7_2:-49532783 | None:intergenic |
| CTTCTCAATACAGAAAACAC+AGG | 0.686274 | 7_2:+49533002 | Msa1060840:CDS |
| GCAATGGAAGATGAAGCAGG+GGG | 0.758923 | 7_2:-49533622 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAAAATCTTCATT+GGG | - | chr7_2:49533280-49533299 | None:intergenic | 10.0% |
| !! | ATAAAATAAAAAATCTTCAT+TGG | - | chr7_2:49533281-49533300 | None:intergenic | 10.0% |
| !! | TAAAATAAAAAATCTTCATT+GGG | - | chr7_2:49533280-49533299 | None:intergenic | 10.0% |
| !! | ATAAAATAAAAAATCTTCAT+TGG | - | chr7_2:49533281-49533300 | None:intergenic | 10.0% |
| !!! | ATTTTAAAAGAAGTGAAAAA+AGG | - | chr7_2:49533307-49533326 | None:intergenic | 15.0% |
| !!! | ATTTTAAAAGAAGTGAAAAA+AGG | - | chr7_2:49533307-49533326 | None:intergenic | 15.0% |
| !! | TTTAACTTTCAACAAAAGCT+TGG | + | chr7_2:49533031-49533050 | Msa1060840:CDS | 25.0% |
| ! | AAAACAATTTCAACATTGTC+AGG | - | chr7_2:49533110-49533129 | None:intergenic | 25.0% |
| !! | GACAATGTTGAAATTGTTTT+TGG | + | chr7_2:49533110-49533129 | Msa1060840:CDS | 25.0% |
| !!! | GAAATTGTTTTTGGTTACTA+CGG | + | chr7_2:49533119-49533138 | Msa1060840:CDS | 25.0% |
| ! | AATGTTAAATGAAGAAGGAA+TGG | - | chr7_2:49533334-49533353 | None:intergenic | 25.0% |
| ! | GGATAAATGTTAAATGAAGA+AGG | - | chr7_2:49533339-49533358 | None:intergenic | 25.0% |
| ! | TCATTTAACATTTATCCGAT+TGG | + | chr7_2:49533342-49533361 | Msa1060840:intron | 25.0% |
| ! | CTGTATAAAACAATACCAAT+CGG | - | chr7_2:49533360-49533379 | None:intergenic | 25.0% |
| !! | ATAAAACTTTGTGCTGATAA+TGG | + | chr7_2:49533431-49533450 | Msa1060840:CDS | 25.0% |
| ! | AAGGTGTATTTACTTAATGA+TGG | + | chr7_2:49533470-49533489 | Msa1060840:CDS | 25.0% |
| !! | TTTAACTTTCAACAAAAGCT+TGG | + | chr7_2:49533031-49533050 | Msa1060840:CDS | 25.0% |
| ! | AAAACAATTTCAACATTGTC+AGG | - | chr7_2:49533110-49533129 | None:intergenic | 25.0% |
| !! | GACAATGTTGAAATTGTTTT+TGG | + | chr7_2:49533110-49533129 | Msa1060840:CDS | 25.0% |
| !!! | GAAATTGTTTTTGGTTACTA+CGG | + | chr7_2:49533119-49533138 | Msa1060840:CDS | 25.0% |
| ! | AATGTTAAATGAAGAAGGAA+TGG | - | chr7_2:49533334-49533353 | None:intergenic | 25.0% |
| ! | GGATAAATGTTAAATGAAGA+AGG | - | chr7_2:49533339-49533358 | None:intergenic | 25.0% |
| ! | TCATTTAACATTTATCCGAT+TGG | + | chr7_2:49533342-49533361 | Msa1060840:intron | 25.0% |
| ! | CTGTATAAAACAATACCAAT+CGG | - | chr7_2:49533360-49533379 | None:intergenic | 25.0% |
| !! | ATAAAACTTTGTGCTGATAA+TGG | + | chr7_2:49533431-49533450 | Msa1060840:CDS | 25.0% |
| ! | AAGGTGTATTTACTTAATGA+TGG | + | chr7_2:49533470-49533489 | Msa1060840:CDS | 25.0% |
| ACAACTGAGAAATATTCAAG+CGG | - | chr7_2:49532786-49532805 | None:intergenic | 30.0% | |
| TGAATATTTCTCAGTTGTCA+AGG | + | chr7_2:49532788-49532807 | Msa1060840:CDS | 30.0% | |
| AAATTTGTCTTCACAAAAGC+TGG | - | chr7_2:49532957-49532976 | None:intergenic | 30.0% | |
| CTACGGTAATAATATGTTCT+CGG | + | chr7_2:49533136-49533155 | Msa1060840:CDS | 30.0% | |
| TGGCAATGAAGAGAAATTTA+AGG | + | chr7_2:49533451-49533470 | Msa1060840:CDS | 30.0% | |
| GGAAAACTTACAACACAATT+TGG | + | chr7_2:49533491-49533510 | Msa1060840:CDS | 30.0% | |
| ! | TCAATTTGAAGCGTATTGTT+TGG | - | chr7_2:49533562-49533581 | None:intergenic | 30.0% |
| ACAACTGAGAAATATTCAAG+CGG | - | chr7_2:49532786-49532805 | None:intergenic | 30.0% | |
| TGAATATTTCTCAGTTGTCA+AGG | + | chr7_2:49532788-49532807 | Msa1060840:CDS | 30.0% | |
| AAATTTGTCTTCACAAAAGC+TGG | - | chr7_2:49532957-49532976 | None:intergenic | 30.0% | |
| CTACGGTAATAATATGTTCT+CGG | + | chr7_2:49533136-49533155 | Msa1060840:CDS | 30.0% | |
| TGGCAATGAAGAGAAATTTA+AGG | + | chr7_2:49533451-49533470 | Msa1060840:CDS | 30.0% | |
| GGAAAACTTACAACACAATT+TGG | + | chr7_2:49533491-49533510 | Msa1060840:CDS | 30.0% | |
| ! | TCAATTTGAAGCGTATTGTT+TGG | - | chr7_2:49533562-49533581 | None:intergenic | 30.0% |
| CAACTGAGAAATATTCAAGC+GGG | - | chr7_2:49532785-49532804 | None:intergenic | 35.0% | |
| TAGCTAATCTATCACGTTCA+TGG | + | chr7_2:49532976-49532995 | Msa1060840:CDS | 35.0% | |
| CTTCTCAATACAGAAAACAC+AGG | + | chr7_2:49533002-49533021 | Msa1060840:CDS | 35.0% | |
| ATCAAAATACGCAGTGTGAT+TGG | - | chr7_2:49533228-49533247 | None:intergenic | 35.0% | |
| GGAATGTATCTCAAGCAATA+TGG | + | chr7_2:49533398-49533417 | Msa1060840:CDS | 35.0% | |
| !! | CAGCACAAAGTTTTATATCC+TGG | - | chr7_2:49533427-49533446 | None:intergenic | 35.0% |
| ! | AACACAATTTGGAATCCTGT+GGG | + | chr7_2:49533502-49533521 | Msa1060840:CDS | 35.0% |
| CAACTGAGAAATATTCAAGC+GGG | - | chr7_2:49532785-49532804 | None:intergenic | 35.0% | |
| TAGCTAATCTATCACGTTCA+TGG | + | chr7_2:49532976-49532995 | Msa1060840:CDS | 35.0% | |
| CTTCTCAATACAGAAAACAC+AGG | + | chr7_2:49533002-49533021 | Msa1060840:CDS | 35.0% | |
| ATCAAAATACGCAGTGTGAT+TGG | - | chr7_2:49533228-49533247 | None:intergenic | 35.0% | |
| GGAATGTATCTCAAGCAATA+TGG | + | chr7_2:49533398-49533417 | Msa1060840:CDS | 35.0% | |
| !! | CAGCACAAAGTTTTATATCC+TGG | - | chr7_2:49533427-49533446 | None:intergenic | 35.0% |
| ! | AACACAATTTGGAATCCTGT+GGG | + | chr7_2:49533502-49533521 | Msa1060840:CDS | 35.0% |
| GTTAACCCCATGTTAACACA+TGG | + | chr7_2:49533053-49533072 | Msa1060840:CDS | 40.0% | |
| TCCAACCATGTGTTAACATG+GGG | - | chr7_2:49533061-49533080 | None:intergenic | 40.0% | |
| GTCCAACCATGTGTTAACAT+GGG | - | chr7_2:49533062-49533081 | None:intergenic | 40.0% | |
| AGTCCAACCATGTGTTAACA+TGG | - | chr7_2:49533063-49533082 | None:intergenic | 40.0% | |
| ACATGGTTGGACTGAGTTTA+AGG | + | chr7_2:49533070-49533089 | Msa1060840:CDS | 40.0% | |
| CACCTCATGACTTACATACA+TGG | + | chr7_2:49533183-49533202 | Msa1060840:intron | 40.0% | |
| TGCCATGTATGTAAGTCATG+AGG | - | chr7_2:49533188-49533207 | None:intergenic | 40.0% | |
| !! | TTTTGATTCTCTCCTTACCG+AGG | + | chr7_2:49533241-49533260 | Msa1060840:intron | 40.0% |
| !! | CAGCAAGTTGATGACGAATT+TGG | + | chr7_2:49533377-49533396 | Msa1060840:intron | 40.0% |
| TCTCAAGCAATATGGTTTCC+AGG | + | chr7_2:49533406-49533425 | Msa1060840:CDS | 40.0% | |
| ! | CAACACAATTTGGAATCCTG+TGG | + | chr7_2:49533501-49533520 | Msa1060840:CDS | 40.0% |
| AAGACCAACAACTTCAGAGT+TGG | + | chr7_2:49533536-49533555 | Msa1060840:CDS | 40.0% | |
| AAGCAATGGAAGATGAAGCA+GGG | - | chr7_2:49533627-49533646 | None:intergenic | 40.0% | |
| GTTAACCCCATGTTAACACA+TGG | + | chr7_2:49533053-49533072 | Msa1060840:CDS | 40.0% | |
| TCCAACCATGTGTTAACATG+GGG | - | chr7_2:49533061-49533080 | None:intergenic | 40.0% | |
| GTCCAACCATGTGTTAACAT+GGG | - | chr7_2:49533062-49533081 | None:intergenic | 40.0% | |
| AGTCCAACCATGTGTTAACA+TGG | - | chr7_2:49533063-49533082 | None:intergenic | 40.0% | |
| ACATGGTTGGACTGAGTTTA+AGG | + | chr7_2:49533070-49533089 | Msa1060840:CDS | 40.0% | |
| CACCTCATGACTTACATACA+TGG | + | chr7_2:49533183-49533202 | Msa1060840:intron | 40.0% | |
| TGCCATGTATGTAAGTCATG+AGG | - | chr7_2:49533188-49533207 | None:intergenic | 40.0% | |
| !! | TTTTGATTCTCTCCTTACCG+AGG | + | chr7_2:49533241-49533260 | Msa1060840:intron | 40.0% |
| !! | CAGCAAGTTGATGACGAATT+TGG | + | chr7_2:49533377-49533396 | Msa1060840:intron | 40.0% |
| TCTCAAGCAATATGGTTTCC+AGG | + | chr7_2:49533406-49533425 | Msa1060840:CDS | 40.0% | |
| ! | CAACACAATTTGGAATCCTG+TGG | + | chr7_2:49533501-49533520 | Msa1060840:CDS | 40.0% |
| AAGACCAACAACTTCAGAGT+TGG | + | chr7_2:49533536-49533555 | Msa1060840:CDS | 40.0% | |
| AAGCAATGGAAGATGAAGCA+GGG | - | chr7_2:49533627-49533646 | None:intergenic | 40.0% | |
| ACCCCATGTTAACACATGGT+TGG | + | chr7_2:49533057-49533076 | Msa1060840:CDS | 45.0% | |
| TGAGAAAGTCATCCTCGGTA+AGG | - | chr7_2:49533256-49533275 | None:intergenic | 45.0% | |
| TCTTGCAGAAATGATCCCAC+AGG | - | chr7_2:49533520-49533539 | None:intergenic | 45.0% | |
| !! | TTGGCCAACTCTGAAGTTGT+TGG | - | chr7_2:49533543-49533562 | None:intergenic | 45.0% |
| AGCAATGGAAGATGAAGCAG+GGG | - | chr7_2:49533626-49533645 | None:intergenic | 45.0% | |
| GAAGCAATGGAAGATGAAGC+AGG | - | chr7_2:49533628-49533647 | None:intergenic | 45.0% | |
| TCCATTGCTTCTGCTTAGTG+AGG | + | chr7_2:49533637-49533656 | Msa1060840:CDS | 45.0% | |
| ACCTCACTAAGCAGAAGCAA+TGG | - | chr7_2:49533641-49533660 | None:intergenic | 45.0% | |
| ACCCCATGTTAACACATGGT+TGG | + | chr7_2:49533057-49533076 | Msa1060840:CDS | 45.0% | |
| TGAGAAAGTCATCCTCGGTA+AGG | - | chr7_2:49533256-49533275 | None:intergenic | 45.0% | |
| TCTTGCAGAAATGATCCCAC+AGG | - | chr7_2:49533520-49533539 | None:intergenic | 45.0% | |
| !! | TTGGCCAACTCTGAAGTTGT+TGG | - | chr7_2:49533543-49533562 | None:intergenic | 45.0% |
| AGCAATGGAAGATGAAGCAG+GGG | - | chr7_2:49533626-49533645 | None:intergenic | 45.0% | |
| GAAGCAATGGAAGATGAAGC+AGG | - | chr7_2:49533628-49533647 | None:intergenic | 45.0% | |
| TCCATTGCTTCTGCTTAGTG+AGG | + | chr7_2:49533637-49533656 | Msa1060840:CDS | 45.0% | |
| ACCTCACTAAGCAGAAGCAA+TGG | - | chr7_2:49533641-49533660 | None:intergenic | 45.0% | |
| AGTTGTCAAGGTTGCAGAGC+AGG | + | chr7_2:49532800-49532819 | Msa1060840:CDS | 50.0% | |
| TGGGCTGAGAAAGTCATCCT+CGG | - | chr7_2:49533261-49533280 | None:intergenic | 50.0% | |
| GCAATGGAAGATGAAGCAGG+GGG | - | chr7_2:49533625-49533644 | None:intergenic | 50.0% | |
| AGTTGTCAAGGTTGCAGAGC+AGG | + | chr7_2:49532800-49532819 | Msa1060840:CDS | 50.0% | |
| TGGGCTGAGAAAGTCATCCT+CGG | - | chr7_2:49533261-49533280 | None:intergenic | 50.0% | |
| GCAATGGAAGATGAAGCAGG+GGG | - | chr7_2:49533625-49533644 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 49532750 | 49533667 | 49532750 | ID=Msa1060840;Name=Msa1060840 |
| chr7_2 | mRNA | 49532750 | 49533667 | 49532750 | ID=Msa1060840-mRNA-1;Parent=Msa1060840;Name=Msa1060840-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|3|0|193 |
| chr7_2 | exon | 49532750 | 49532821 | 49532750 | ID=Msa1060840-mRNA-1:exon:8918;Parent=Msa1060840-mRNA-1 |
| chr7_2 | exon | 49532936 | 49533157 | 49532936 | ID=Msa1060840-mRNA-1:exon:8919;Parent=Msa1060840-mRNA-1 |
| chr7_2 | exon | 49533380 | 49533667 | 49533380 | ID=Msa1060840-mRNA-1:exon:8920;Parent=Msa1060840-mRNA-1 |
| chr7_2 | CDS | 49532750 | 49532821 | 49532750 | ID=Msa1060840-mRNA-1:cds;Parent=Msa1060840-mRNA-1 |
| chr7_2 | CDS | 49532936 | 49533157 | 49532936 | ID=Msa1060840-mRNA-1:cds;Parent=Msa1060840-mRNA-1 |
| chr7_2 | CDS | 49533380 | 49533667 | 49533380 | ID=Msa1060840-mRNA-1:cds;Parent=Msa1060840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
