Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791870 | AES79080.2 | 55.522 | 335 | 44 | 7 | 1 | 250 | 65 | 379 | 1.74e-99 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791870 | sp|Q9C7R6|PUB17_ARATH | 66.372 | 113 | 33 | 2 | 197 | 309 | 619 | 726 | 4.52e-37 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791870 | G7L051 | 55.522 | 335 | 44 | 7 | 1 | 250 | 65 | 379 | 8.32e-100 | 307 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0791870 | Msa1312590 | 0.998035 | 1.295537e-254 | -8.615850e-47 |
| Msa0325430 | Msa0791870 | 0.939300 | 1.601107e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791870 | MtrunA17_Chr2g0284461 | 91.228 | 114 | 10 | 0 | 197 | 310 | 607 | 720 | 1.81e-62 | 210 |
| Msa0791870 | MtrunA17_Chr3g0139641 | 90.625 | 96 | 9 | 0 | 201 | 296 | 37 | 132 | 1.46e-53 | 172 |
| Msa0791870 | MtrunA17_Chr5g0397801 | 49.432 | 176 | 56 | 5 | 78 | 244 | 8 | 159 | 4.95e-37 | 133 |
| Msa0791870 | MtrunA17_Chr2g0314681 | 67.000 | 100 | 21 | 2 | 12 | 102 | 132 | 228 | 8.15e-31 | 118 |
| Msa0791870 | MtrunA17_Chr8g0386391 | 88.136 | 59 | 7 | 0 | 78 | 136 | 8 | 66 | 1.03e-29 | 107 |
| Msa0791870 | MtrunA17_Chr7g0235141 | 85.455 | 55 | 8 | 0 | 196 | 250 | 1 | 55 | 1.01e-25 | 97.1 |
| Msa0791870 | MtrunA17_Chr8g0386401 | 75.926 | 54 | 6 | 1 | 148 | 194 | 1 | 54 | 2.06e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791870 | AT1G29340.1 | 66.372 | 113 | 33 | 2 | 197 | 309 | 619 | 726 | 4.59e-38 | 143 |
| Msa0791870 | AT4G20330.1 | 46.111 | 180 | 77 | 3 | 78 | 248 | 8 | 176 | 8.17e-33 | 122 |
| Msa0791870 | AT1G78620.1 | 65.476 | 84 | 20 | 1 | 12 | 86 | 141 | 224 | 1.54e-24 | 101 |
| Msa0791870 | AT1G78620.2 | 66.265 | 83 | 19 | 1 | 13 | 86 | 151 | 233 | 2.87e-24 | 101 |
| Msa0791870 | AT4G21010.1 | 52.419 | 124 | 48 | 3 | 78 | 194 | 8 | 127 | 1.84e-23 | 97.8 |
Find 71 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTACATTATGGTGTATT+AGG | 0.247651 | 5_3:-2951278 | Msa0791870:CDS |
| CTCTTACAAGATAATCTTTA+CGG | 0.253454 | 5_3:-2952235 | Msa0791870:CDS |
| GCAGCCACCACCGGAGTATT+AGG | 0.268237 | 5_3:+2952992 | None:intergenic |
| AGGGGTCCAGGGAGTGTAAT+TGG | 0.309595 | 5_3:-2954492 | Msa0791870:CDS |
| CTTCAAACCCTACTATTTAC+CGG | 0.331149 | 5_3:-2951365 | Msa0791870:CDS |
| TACTTTAGAGTTGATTGGTT+TGG | 0.363493 | 5_3:-2954571 | Msa0791870:intron |
| CGCTCCATCTGAGCACCAAC+GGG | 0.368841 | 5_3:+2952875 | None:intergenic |
| CATACTTCATTTATTTGCTC+TGG | 0.378031 | 5_3:+2952338 | None:intergenic |
| GCTTTGTCCCGGTAAATAGT+AGG | 0.385439 | 5_3:+2951357 | None:intergenic |
| TCTTACAAGATAATCTTTAC+GGG | 0.394215 | 5_3:-2952234 | Msa0791870:intron |
| TGCAATTGAAAGGGCGGTTA+AGG | 0.401505 | 5_3:-2951408 | Msa0791870:CDS |
| TGCCCGTCGTATGCTACGTT+TGG | 0.409026 | 5_3:+2952264 | None:intergenic |
| GAAAATGCATCTCTACATTA+TGG | 0.412312 | 5_3:-2951287 | Msa0791870:CDS |
| CTAGCAATTCAGCTCAAACT+AGG | 0.421052 | 5_3:-2951238 | Msa0791870:CDS |
| AGAAAAGGAAGAAGGGGTCC+AGG | 0.424572 | 5_3:-2954504 | Msa0791870:CDS |
| GTGTTTGTTTAGGGTACAGC+TGG | 0.432468 | 5_3:-2954549 | Msa0791870:intron |
| GTATTATACCACTATATTAC+AGG | 0.432916 | 5_3:+2951164 | None:intergenic |
| ATGCGTTGTGGAACACCAAC+GGG | 0.433508 | 5_3:-2951485 | Msa0791870:CDS |
| GTTAAGGCACCAACTATTGC+CGG | 0.433899 | 5_3:-2951392 | Msa0791870:CDS |
| GCTGCAAATGCTTCATCAAA+TGG | 0.435679 | 5_3:-2952974 | Msa0791870:CDS |
| TAGGGTACAGCTGGAACAAA+AGG | 0.436184 | 5_3:-2954540 | Msa0791870:CDS |
| TAGTAGGGTTTGAAGTAATC+CGG | 0.457922 | 5_3:+2951373 | None:intergenic |
| TTTCTCAGCTTTGGAGACTT+GGG | 0.460386 | 5_3:-2954407 | Msa0791870:CDS |
| CTGAGAAAAGAAAAGGAAGA+AGG | 0.478719 | 5_3:-2954512 | Msa0791870:CDS |
| AGGGATTCAAGCTTTGCTGC+AGG | 0.485529 | 5_3:-2951218 | Msa0791870:CDS |
| AGAATTGCGTCGAGCAAAGT+TGG | 0.491272 | 5_3:-2953025 | Msa0791870:CDS |
| CAGCATTGCTCGAGTTATGC+CGG | 0.494015 | 5_3:-2951445 | Msa0791870:CDS |
| CTTTGTCCCGGTAAATAGTA+GGG | 0.497495 | 5_3:+2951358 | None:intergenic |
| TTCAAACCCTACTATTTACC+GGG | 0.497622 | 5_3:-2951364 | Msa0791870:CDS |
| GGGGTTGCTGAGAAAAGAAA+AGG | 0.497980 | 5_3:-2954519 | Msa0791870:CDS |
| TGAAGTAATCCGGCAATAGT+TGG | 0.499205 | 5_3:+2951383 | None:intergenic |
| CTATATCCAATTACACTCCC+TGG | 0.511289 | 5_3:+2954486 | None:intergenic |
| GAGGTTCAGCTGCAATTGAA+AGG | 0.514449 | 5_3:-2951418 | Msa0791870:CDS |
| GGATTCAAGCTTTGCTGCAG+GGG | 0.516848 | 5_3:-2951216 | Msa0791870:CDS |
| GGGATTCAAGCTTTGCTGCA+GGG | 0.523093 | 5_3:-2951217 | Msa0791870:CDS |
| TTGTGGAACACCAACGGGTA+AGG | 0.525498 | 5_3:-2951480 | Msa0791870:CDS |
| AGGGTACAGCTGGAACAAAA+GGG | 0.526901 | 5_3:-2954539 | Msa0791870:CDS |
| GAAGCATTTGCAGCCACCAC+CGG | 0.530483 | 5_3:+2952983 | None:intergenic |
| ACGTCTAGATCGCTTTGTCC+CGG | 0.534083 | 5_3:+2951346 | None:intergenic |
| TAGCAATTCAGCTCAAACTA+GGG | 0.535704 | 5_3:-2951237 | Msa0791870:CDS |
| GAGGAAAGCACAAACGCAAT+CGG | 0.535952 | 5_3:+2954458 | None:intergenic |
| TGAGACTGTGTCACTCAACT+TGG | 0.545176 | 5_3:+2954365 | None:intergenic |
| CATTATGGTGTATTAGGTGT+AGG | 0.552166 | 5_3:-2951272 | Msa0791870:CDS |
| GAAAAGGAAGAAGGGGTCCA+GGG | 0.558281 | 5_3:-2954503 | Msa0791870:CDS |
| TGTTATTGATCTATTGCTTG+AGG | 0.558507 | 5_3:-2952852 | Msa0791870:intron |
| AACCAAACGTAGCATACGAC+GGG | 0.560461 | 5_3:-2952266 | Msa0791870:CDS |
| ACGCTCCATCTGAGCACCAA+CGG | 0.570793 | 5_3:+2952874 | None:intergenic |
| TGAGAAAAGAAAAGGAAGAA+GGG | 0.576058 | 5_3:-2954511 | Msa0791870:CDS |
| ACGTAGCATACGACGGGCAA+CGG | 0.576494 | 5_3:-2952260 | Msa0791870:CDS |
| ACTGCATTCTCCTTACCCGT+TGG | 0.580022 | 5_3:+2951470 | None:intergenic |
| AAAACCTAATACTCCGGTGG+TGG | 0.582600 | 5_3:-2952996 | Msa0791870:CDS |
| AGGTTCAGCTGCAATTGAAA+GGG | 0.584279 | 5_3:-2951417 | Msa0791870:CDS |
| CTCGAGTTATGCCGGAGTGG+AGG | 0.588750 | 5_3:-2951437 | Msa0791870:CDS |
| TAGCAGAAAACCTAATACTC+CGG | 0.589094 | 5_3:-2953002 | Msa0791870:CDS |
| GATGCGTTGTGGAACACCAA+CGG | 0.591442 | 5_3:-2951486 | Msa0791870:CDS |
| AAGATGTTTCTGAGAGTCTG+AGG | 0.594174 | 5_3:-2952293 | Msa0791870:CDS |
| ATTAGGTGTAGGCTATGCAT+TGG | 0.596170 | 5_3:-2951261 | Msa0791870:CDS |
| AAACCAAACGTAGCATACGA+CGG | 0.608927 | 5_3:-2952267 | Msa0791870:CDS |
| TTCAGCTGCAATTGAAAGGG+CGG | 0.609680 | 5_3:-2951414 | Msa0791870:CDS |
| CTATATTACAGGTACAGAGA+TGG | 0.627725 | 5_3:+2951175 | None:intergenic |
| GGGTACAGCTGGAACAAAAG+GGG | 0.630163 | 5_3:-2954538 | Msa0791870:CDS |
| GAGAAAAGAAAAGGAAGAAG+GGG | 0.634746 | 5_3:-2954510 | Msa0791870:CDS |
| ACAGGTACAGAGATGGACAT+TGG | 0.635671 | 5_3:+2951182 | None:intergenic |
| AAACACTATAGCAAGTGAAG+CGG | 0.655689 | 5_3:+2951319 | None:intergenic |
| AATTCTCAAATGATACTGAG+AGG | 0.667400 | 5_3:-2952928 | Msa0791870:CDS |
| TTGCAGCTGAACCTCCACTC+CGG | 0.668193 | 5_3:+2951426 | None:intergenic |
| CTCCATCTGAGCACCAACGG+GGG | 0.668583 | 5_3:+2952877 | None:intergenic |
| TTGCTCGAGTTATGCCGGAG+TGG | 0.674659 | 5_3:-2951440 | Msa0791870:CDS |
| TTGATAGGAATGATGCGTTG+TGG | 0.684688 | 5_3:-2951497 | Msa0791870:intron |
| GCTCCATCTGAGCACCAACG+GGG | 0.691668 | 5_3:+2952876 | None:intergenic |
| CAGAAAACCTAATACTCCGG+TGG | 0.697637 | 5_3:-2952999 | Msa0791870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTAATCCATTTTATT+GGG | + | chr5_3:2952034-2952053 | None:intergenic | 10.0% |
| !!! | AAAATATTAATCCATTTTAT+TGG | + | chr5_3:2952035-2952054 | None:intergenic | 10.0% |
| !!! | ATTAATATTTTACTGAATAA+GGG | - | chr5_3:2952044-2952063 | Msa0791870:intron | 10.0% |
| !!! | AACATTAAGTTTTGAATTTT+AGG | - | chr5_3:2951738-2951757 | Msa0791870:intron | 15.0% |
| !!! | ATATTTGAATTTTTAGTTAG+TGG | - | chr5_3:2951999-2952018 | Msa0791870:intron | 15.0% |
| !!! | GATTAATATTTTACTGAATA+AGG | - | chr5_3:2952043-2952062 | Msa0791870:intron | 15.0% |
| !! | ATGAAAAAAAAATGAAACAT+TGG | + | chr5_3:2952136-2952155 | None:intergenic | 15.0% |
| !!! | TTTCTTCTACATTATTTTAA+TGG | - | chr5_3:2953642-2953661 | Msa0791870:intron | 15.0% |
| !!! | TTTTATACTTTAGAGTTGAT+TGG | - | chr5_3:2951187-2951206 | Msa0791870:CDS | 20.0% |
| !! | TGTTTCATTGTGTTAAAAAT+TGG | - | chr5_3:2951666-2951685 | Msa0791870:intron | 20.0% |
| !! | GTTTCATTGTGTTAAAAATT+GGG | - | chr5_3:2951667-2951686 | Msa0791870:intron | 20.0% |
| !! | ATTAAAGTATGCTAAACAAT+TGG | - | chr5_3:2951804-2951823 | Msa0791870:intron | 20.0% |
| !! | TTTACAGAGAAATAAACAAA+TGG | + | chr5_3:2952166-2952185 | None:intergenic | 20.0% |
| !!! | TTTTAATTATTGTTAGTGAC+TGG | - | chr5_3:2952976-2952995 | Msa0791870:CDS | 20.0% |
| !!! | TATTAGTTTCAATTTGCAAT+TGG | + | chr5_3:2953143-2953162 | None:intergenic | 20.0% |
| !! | CAAATTGAAACTAATATGTT+TGG | - | chr5_3:2953147-2953166 | Msa0791870:intron | 20.0% |
| !! | TGAACAAAGAAAAAAATTGA+TGG | + | chr5_3:2954173-2954192 | None:intergenic | 20.0% |
| !!! | ATCAATTTTTTTCTTTGTTC+AGG | - | chr5_3:2954172-2954191 | Msa0791870:intron | 20.0% |
| !!! | TAGTCAACTCTTTCTTTTTT+TGG | - | chr5_3:2951458-2951477 | Msa0791870:CDS | 25.0% |
| !! | TAGATATATGTTAGTTTCCA+AGG | - | chr5_3:2951482-2951501 | Msa0791870:CDS | 25.0% |
| !!! | AGTTTTAAGTATGAAGTTCA+GGG | + | chr5_3:2951514-2951533 | None:intergenic | 25.0% |
| !!! | ATTTGGTTTTGATTCCAAAT+TGG | - | chr5_3:2951699-2951718 | Msa0791870:intron | 25.0% |
| !!! | TTTGGTTTTGATTCCAAATT+GGG | - | chr5_3:2951700-2951719 | Msa0791870:intron | 25.0% |
| !! | GTTTAGCATACTTTAATTTC+AGG | + | chr5_3:2951801-2951820 | None:intergenic | 25.0% |
| ! | GTTTCAAAAATTCCAAATCA+TGG | + | chr5_3:2951913-2951932 | None:intergenic | 25.0% |
| ! | GTTCAAATGCACAATTTATT+TGG | - | chr5_3:2951951-2951970 | Msa0791870:intron | 25.0% |
| !! | TGTACAAATGTTTGAAACTT+TGG | - | chr5_3:2952442-2952461 | Msa0791870:intron | 25.0% |
| !!! | AGAGAAAGTACAAACTTTTT+GGG | + | chr5_3:2952486-2952505 | None:intergenic | 25.0% |
| ! | AATGGAAGAAATTCAAAAAC+TGG | - | chr5_3:2952807-2952826 | Msa0791870:intron | 25.0% |
| !! | ATTTCTCAATATGTTTTGCT+GGG | + | chr5_3:2953251-2953270 | None:intergenic | 25.0% |
| !! | AATTTCTCAATATGTTTTGC+TGG | + | chr5_3:2953252-2953271 | None:intergenic | 25.0% |
| !! | TCGTTAAAACCATATTGATT+TGG | - | chr5_3:2953365-2953384 | Msa0791870:intron | 25.0% |
| ! | CTCTTACAAGATAATCTTTA+CGG | - | chr5_3:2953528-2953547 | Msa0791870:intron | 25.0% |
| ! | TCTTACAAGATAATCTTTAC+GGG | - | chr5_3:2953529-2953548 | Msa0791870:intron | 25.0% |
| !! | ATGAAGAAGTTATTTGCTAA+AGG | + | chr5_3:2953589-2953608 | None:intergenic | 25.0% |
| !!! | ACATTATTTTAATGGCAAGA+TGG | - | chr5_3:2953650-2953669 | Msa0791870:intron | 25.0% |
| !!! | GCATTTGTTATAACTTCATA+AGG | + | chr5_3:2953994-2954013 | None:intergenic | 25.0% |
| !! | TTCAGAAGAGTATATTGAAA+AGG | + | chr5_3:2954021-2954040 | None:intergenic | 25.0% |
| ! | AAAGTTTATCACTGCAAATT+AGG | + | chr5_3:2954117-2954136 | None:intergenic | 25.0% |
| !!! | ATCTTTTTGTTTGCTTTGTT+TGG | - | chr5_3:2954242-2954261 | Msa0791870:intron | 25.0% |
| !! | TACTTTAGAGTTGATTGGTT+TGG | - | chr5_3:2951192-2951211 | Msa0791870:CDS | 30.0% |
| !! | ATTGGTTTGGTGTTTGTTTA+GGG | - | chr5_3:2951205-2951224 | Msa0791870:CDS | 30.0% |
| TGAGAAAAGAAAAGGAAGAA+GGG | - | chr5_3:2951252-2951271 | Msa0791870:CDS | 30.0% | |
| !!! | GAGTTTTAAGTATGAAGTTC+AGG | + | chr5_3:2951515-2951534 | None:intergenic | 30.0% |
| AAAAGTTTGATATCCATCGA+AGG | + | chr5_3:2951537-2951556 | None:intergenic | 30.0% | |
| ! | TGTCCTGTTTGAAATTAAAG+TGG | - | chr5_3:2951578-2951597 | Msa0791870:intron | 30.0% |
| ! | GTTCCACTTTAATTTCAAAC+AGG | + | chr5_3:2951584-2951603 | None:intergenic | 30.0% |
| GAAATTAAAGTGGAACAAGA+AGG | - | chr5_3:2951588-2951607 | Msa0791870:intron | 30.0% | |
| !! | ATTGTTTGTTAGCCTTTGTT+TGG | - | chr5_3:2951626-2951645 | Msa0791870:intron | 30.0% |
| CACAATGAAACAATCATCAA+TGG | + | chr5_3:2951658-2951677 | None:intergenic | 30.0% | |
| !! | AAATTGGGTTGACATTCATT+TGG | - | chr5_3:2951682-2951701 | Msa0791870:intron | 30.0% |
| AACTTAATGTTGTTGCACAT+GGG | + | chr5_3:2951729-2951748 | None:intergenic | 30.0% | |
| AAACTTAATGTTGTTGCACA+TGG | + | chr5_3:2951730-2951749 | None:intergenic | 30.0% | |
| CCATTGAACATGTTTATCAA+AGG | + | chr5_3:2951847-2951866 | None:intergenic | 30.0% | |
| CCTTTGATAAACATGTTCAA+TGG | - | chr5_3:2951844-2951863 | Msa0791870:intron | 30.0% | |
| !!! | ATAAGGGTTTTGAAGTTTGT+AGG | - | chr5_3:2952060-2952079 | Msa0791870:intron | 30.0% |
| ! | TTTGAAGTTTGTAGGATTGA+TGG | - | chr5_3:2952068-2952087 | Msa0791870:intron | 30.0% |
| ATATCATAGTTCCAATCTCA+CGG | + | chr5_3:2952096-2952115 | None:intergenic | 30.0% | |
| ! | GAACTATGATATAAAAGTGC+AGG | - | chr5_3:2952104-2952123 | Msa0791870:intron | 30.0% |
| TTCCTTTGTGCATATTTAGA+AGG | - | chr5_3:2952251-2952270 | Msa0791870:CDS | 30.0% | |
| ATCCTTCTAAATATGCACAA+AGG | + | chr5_3:2952256-2952275 | None:intergenic | 30.0% | |
| TTTGTGCATATTTAGAAGGA+TGG | - | chr5_3:2952255-2952274 | Msa0791870:CDS | 30.0% | |
| CCAACAATTTCTGATTCAAA+TGG | + | chr5_3:2952312-2952331 | None:intergenic | 30.0% | |
| CCATTTGAATCAGAAATTGT+TGG | - | chr5_3:2952309-2952328 | Msa0791870:intron | 30.0% | |
| ATACATGGTGATATCATGTA+TGG | - | chr5_3:2952356-2952375 | Msa0791870:CDS | 30.0% | |
| CATGTATGGAACATTAAGAA+AGG | - | chr5_3:2952370-2952389 | Msa0791870:intron | 30.0% | |
| ! | GTTTGAAACTTTGGATACTT+CGG | - | chr5_3:2952451-2952470 | Msa0791870:intron | 30.0% |
| !! | AGTACAAACTTTTTGGGAAA+AGG | + | chr5_3:2952480-2952499 | None:intergenic | 30.0% |
| !! | CAGAGAAAGTACAAACTTTT+TGG | + | chr5_3:2952487-2952506 | None:intergenic | 30.0% |
| AAAGTTTGTACTTTCTCTGA+AGG | - | chr5_3:2952488-2952507 | Msa0791870:intron | 30.0% | |
| TCTGAAGGACTAATAGATTT+AGG | - | chr5_3:2952503-2952522 | Msa0791870:intron | 30.0% | |
| ! | GGTTTAATGAGTTATTTCAG+TGG | - | chr5_3:2952524-2952543 | Msa0791870:intron | 30.0% |
| AATTCTCAAATGATACTGAG+AGG | - | chr5_3:2952835-2952854 | Msa0791870:intron | 30.0% | |
| TGTTATTGATCTATTGCTTG+AGG | - | chr5_3:2952911-2952930 | Msa0791870:CDS | 30.0% | |
| ! | TCTATTGCTTGAGGTAATTT+TGG | - | chr5_3:2952920-2952939 | Msa0791870:CDS | 30.0% |
| TAATTATTGTTAGTGACTGG+CGG | - | chr5_3:2952979-2952998 | Msa0791870:CDS | 30.0% | |
| ! | GGTGACTTTTAAGCTATAAT+GGG | + | chr5_3:2953122-2953141 | None:intergenic | 30.0% |
| ! | TGGTGACTTTTAAGCTATAA+TGG | + | chr5_3:2953123-2953142 | None:intergenic | 30.0% |
| !! | AAACTAATATGTTTGGCTTG+TGG | - | chr5_3:2953154-2953173 | Msa0791870:intron | 30.0% |
| ACCAATGAATATCCACAATT+AGG | - | chr5_3:2953335-2953354 | Msa0791870:intron | 30.0% | |
| TCCTAATTGTGGATATTCAT+TGG | + | chr5_3:2953339-2953358 | None:intergenic | 30.0% | |
| AACGAATCAATTCCTAATTG+TGG | + | chr5_3:2953350-2953369 | None:intergenic | 30.0% | |
| !!! | ACCATATTGATTTGGTGTTT+TGG | - | chr5_3:2953373-2953392 | Msa0791870:intron | 30.0% |
| ACCAAAACACCAAATCAATA+TGG | + | chr5_3:2953377-2953396 | None:intergenic | 30.0% | |
| CATACTTCATTTATTTGCTC+TGG | + | chr5_3:2953428-2953447 | None:intergenic | 30.0% | |
| AAGTATGCTATGTTGATATG+AGG | - | chr5_3:2953441-2953460 | Msa0791870:intron | 30.0% | |
| ATTGAGATTTGTGTTGAAAG+TGG | - | chr5_3:2953749-2953768 | Msa0791870:intron | 30.0% | |
| ! | TACATAACACACATTAGTCT+CGG | + | chr5_3:2953900-2953919 | None:intergenic | 30.0% |
| TGTGTGTTATGTATGATTGT+AGG | - | chr5_3:2953907-2953926 | Msa0791870:intron | 30.0% | |
| !! | TTTGCTTTGTTTGGATTGAT+AGG | - | chr5_3:2954251-2954270 | Msa0791870:intron | 30.0% |
| GAAAATGCATCTCTACATTA+TGG | - | chr5_3:2954476-2954495 | Msa0791870:CDS | 30.0% | |
| TCTCTACATTATGGTGTATT+AGG | - | chr5_3:2954485-2954504 | Msa0791870:CDS | 30.0% | |
| !! | GATTGGTTTGGTGTTTGTTT+AGG | - | chr5_3:2951204-2951223 | Msa0791870:CDS | 35.0% |
| CTGAGAAAAGAAAAGGAAGA+AGG | - | chr5_3:2951251-2951270 | Msa0791870:CDS | 35.0% | |
| GAGAAAAGAAAAGGAAGAAG+GGG | - | chr5_3:2951253-2951272 | Msa0791870:CDS | 35.0% | |
| ! | TGTGCTTTCCTCACAATTTT+TGG | - | chr5_3:2951316-2951335 | Msa0791870:CDS | 35.0% |
| !!! | TTCCTCACAATTTTTGGAGT+TGG | - | chr5_3:2951322-2951341 | Msa0791870:CDS | 35.0% |
| CATACTTAAAACTCCTTCGA+TGG | - | chr5_3:2951521-2951540 | Msa0791870:intron | 35.0% | |
| CAATGGAAGTAACCAAACAA+AGG | + | chr5_3:2951641-2951660 | None:intergenic | 35.0% | |
| ATGTTCAATGGCATGTTACA+TGG | - | chr5_3:2951856-2951875 | Msa0791870:intron | 35.0% | |
| !! | CTTGATGATGAACCATGATT+TGG | - | chr5_3:2951898-2951917 | Msa0791870:intron | 35.0% |
| GAACAAAATATGACTGTGAG+TGG | + | chr5_3:2951935-2951954 | None:intergenic | 35.0% | |
| ! | GACTAAAGTGCCCAATAAAA+TGG | - | chr5_3:2952021-2952040 | Msa0791870:intron | 35.0% |
| TCAGAAATTGTTGGCAAGTT+TGG | - | chr5_3:2952318-2952337 | Msa0791870:intron | 35.0% | |
| CAGAAATTGTTGGCAAGTTT+GGG | - | chr5_3:2952319-2952338 | Msa0791870:intron | 35.0% | |
| ACAGCAGCACAATAATCTTA+AGG | - | chr5_3:2952408-2952427 | Msa0791870:intron | 35.0% | |
| GAAGCACATTTGAATGTTTG+TGG | - | chr5_3:2952659-2952678 | Msa0791870:intron | 35.0% | |
| TAGCAGAAAACCTAATACTC+CGG | - | chr5_3:2952761-2952780 | Msa0791870:intron | 35.0% | |
| !! | TGATTTTGATGCATGAGATG+AGG | - | chr5_3:2953013-2953032 | Msa0791870:CDS | 35.0% |
| !! | GATTTTGATGCATGAGATGA+GGG | - | chr5_3:2953014-2953033 | Msa0791870:CDS | 35.0% |
| !! | ATTTTGATGCATGAGATGAG+GGG | - | chr5_3:2953015-2953034 | Msa0791870:CDS | 35.0% |
| TAACCTCAAACTTAACAGCT+AGG | + | chr5_3:2953094-2953113 | None:intergenic | 35.0% | |
| TGAAGCTTCAACAAAATCAC+AGG | + | chr5_3:2953181-2953200 | None:intergenic | 35.0% | |
| !! | GTTTTGTTACCACTTTTGGA+AGG | - | chr5_3:2953686-2953705 | Msa0791870:intron | 35.0% |
| !! | ACTTTTGGAAGGAGATTTCA+GGG | - | chr5_3:2953697-2953716 | Msa0791870:intron | 35.0% |
| !! | GGACTCATTTGGTGTTTATT+GGG | - | chr5_3:2953956-2953975 | Msa0791870:intron | 35.0% |
| !! | GACTCATTTGGTGTTTATTG+GGG | - | chr5_3:2953957-2953976 | Msa0791870:intron | 35.0% |
| TGTTCCATTAGTGCAGTATT+AGG | - | chr5_3:2954059-2954078 | Msa0791870:intron | 35.0% | |
| AAGTCCTAATACTGCACTAA+TGG | + | chr5_3:2954066-2954085 | None:intergenic | 35.0% | |
| TTTGTTCAGGACTATTGAGT+CGG | - | chr5_3:2954185-2954204 | Msa0791870:intron | 35.0% | |
| ! | TAGTAGGGTTTGAAGTAATC+CGG | + | chr5_3:2954393-2954412 | None:intergenic | 35.0% |
| CTTCAAACCCTACTATTTAC+CGG | - | chr5_3:2954398-2954417 | Msa0791870:CDS | 35.0% | |
| TTCAAACCCTACTATTTACC+GGG | - | chr5_3:2954399-2954418 | Msa0791870:CDS | 35.0% | |
| AAACACTATAGCAAGTGAAG+CGG | + | chr5_3:2954447-2954466 | None:intergenic | 35.0% | |
| CATTATGGTGTATTAGGTGT+AGG | - | chr5_3:2954491-2954510 | Msa0791870:CDS | 35.0% | |
| TAGCAATTCAGCTCAAACTA+GGG | - | chr5_3:2954526-2954545 | Msa0791870:CDS | 35.0% | |
| CTATATCCAATTACACTCCC+TGG | + | chr5_3:2951280-2951299 | None:intergenic | 40.0% | |
| CTCCAACTCCAAAAATTGTG+AGG | + | chr5_3:2951327-2951346 | None:intergenic | 40.0% | |
| !!! | CTCACAATTTTTGGAGTTGG+AGG | - | chr5_3:2951325-2951344 | Msa0791870:CDS | 40.0% |
| !!! | AATTTTTGGAGTTGGAGGAG+CGG | - | chr5_3:2951330-2951349 | Msa0791870:CDS | 40.0% |
| !!! | TTTTCTCAGCTTTGGAGACT+TGG | - | chr5_3:2951355-2951374 | Msa0791870:CDS | 40.0% |
| !! | TTTCTCAGCTTTGGAGACTT+GGG | - | chr5_3:2951356-2951375 | Msa0791870:CDS | 40.0% |
| AGTGAGATAGGCAAAGCATA+TGG | - | chr5_3:2951421-2951440 | Msa0791870:CDS | 40.0% | |
| ACTAACGCTGCATATAGTGA+TGG | + | chr5_3:2952571-2952590 | None:intergenic | 40.0% | |
| GCACATTTGAATGTTTGTGG+CGG | - | chr5_3:2952662-2952681 | Msa0791870:intron | 40.0% | |
| GCTGCAAATGCTTCATCAAA+TGG | - | chr5_3:2952789-2952808 | Msa0791870:intron | 40.0% | |
| AAGCCTAGCTGTTAAGTTTG+AGG | - | chr5_3:2953088-2953107 | Msa0791870:intron | 40.0% | |
| ! | TCTCAATATGTTTTGCTGGG+CGG | + | chr5_3:2953248-2953267 | None:intergenic | 40.0% |
| !!! | TGGTGTTTTGGTTTGCTGAT+AGG | - | chr5_3:2953385-2953404 | Msa0791870:intron | 40.0% |
| ! | AAGATGTTTCTGAGAGTCTG+AGG | - | chr5_3:2953470-2953489 | Msa0791870:intron | 40.0% |
| AAACCAAACGTAGCATACGA+CGG | - | chr5_3:2953496-2953515 | Msa0791870:intron | 40.0% | |
| AAGTGGTAACAAAACCACGT+AGG | + | chr5_3:2953681-2953700 | None:intergenic | 40.0% | |
| !!! | CGTGGTTTTGTTACCACTTT+TGG | - | chr5_3:2953682-2953701 | Msa0791870:intron | 40.0% |
| CTGAAATCTCCTTCCAAAAG+TGG | + | chr5_3:2953698-2953717 | None:intergenic | 40.0% | |
| !! | CACTTTTGGAAGGAGATTTC+AGG | - | chr5_3:2953696-2953715 | Msa0791870:intron | 40.0% |
| AGATTTCAGGGTTGTTCTTC+AGG | - | chr5_3:2953709-2953728 | Msa0791870:intron | 40.0% | |
| GATTTCAGGGTTGTTCTTCA+GGG | - | chr5_3:2953710-2953729 | Msa0791870:intron | 40.0% | |
| ATTTCAGGGTTGTTCTTCAG+GGG | - | chr5_3:2953711-2953730 | Msa0791870:intron | 40.0% | |
| CAATGGTAGAAACAAATCCC+CGG | - | chr5_3:2953854-2953873 | Msa0791870:intron | 40.0% | |
| CTGATGTGGAGGAATTTGAT+GGG | - | chr5_3:2953935-2953954 | Msa0791870:intron | 40.0% | |
| GGAATTTGATGGGACTCATT+TGG | - | chr5_3:2953945-2953964 | Msa0791870:intron | 40.0% | |
| !! | GGGACTCATTTGGTGTTTAT+TGG | - | chr5_3:2953955-2953974 | Msa0791870:intron | 40.0% |
| TTGTTCAGGACTATTGAGTC+GGG | - | chr5_3:2954186-2954205 | Msa0791870:intron | 40.0% | |
| TTGATAGGAATGATGCGTTG+TGG | - | chr5_3:2954266-2954285 | Msa0791870:intron | 40.0% | |
| AGGTTCAGCTGCAATTGAAA+GGG | - | chr5_3:2954346-2954365 | Msa0791870:intron | 40.0% | |
| TGAAGTAATCCGGCAATAGT+TGG | + | chr5_3:2954383-2954402 | None:intergenic | 40.0% | |
| CTTTGTCCCGGTAAATAGTA+GGG | + | chr5_3:2954408-2954427 | None:intergenic | 40.0% | |
| ATTAGGTGTAGGCTATGCAT+TGG | - | chr5_3:2954502-2954521 | Msa0791870:CDS | 40.0% | |
| CTAGCAATTCAGCTCAAACT+AGG | - | chr5_3:2954525-2954544 | Msa0791870:CDS | 40.0% | |
| ! | GTGTTTGTTTAGGGTACAGC+TGG | - | chr5_3:2951214-2951233 | Msa0791870:CDS | 45.0% |
| TAGGGTACAGCTGGAACAAA+AGG | - | chr5_3:2951223-2951242 | Msa0791870:CDS | 45.0% | |
| AGGGTACAGCTGGAACAAAA+GGG | - | chr5_3:2951224-2951243 | Msa0791870:CDS | 45.0% | |
| GGGGTTGCTGAGAAAAGAAA+AGG | - | chr5_3:2951244-2951263 | Msa0791870:CDS | 45.0% | |
| ! | GAGGAAAGCACAAACGCAAT+CGG | + | chr5_3:2951308-2951327 | None:intergenic | 45.0% |
| ! | TGAGACTGTGTCACTCAACT+TGG | + | chr5_3:2951401-2951420 | None:intergenic | 45.0% |
| GACACAGTCTCAAGTGAGAT+AGG | - | chr5_3:2951409-2951428 | Msa0791870:CDS | 45.0% | |
| GAAGTTCAGGGTTTGATCCT+TGG | + | chr5_3:2951502-2951521 | None:intergenic | 45.0% | |
| TGCACATGGGAATCCCAATT+TGG | + | chr5_3:2951716-2951735 | None:intergenic | 45.0% | |
| ! | GATTGATGGTTCCGTGAGAT+TGG | - | chr5_3:2952082-2952101 | Msa0791870:intron | 45.0% |
| ! | GTAGCGCTGAAGAAGATACA+TGG | - | chr5_3:2952341-2952360 | Msa0791870:intron | 45.0% |
| TCAAGCCACACATTGTGTCA+TGG | - | chr5_3:2952632-2952651 | Msa0791870:intron | 45.0% | |
| ! | TTGTGGCGGAAAAGCTAGAT+AGG | - | chr5_3:2952676-2952695 | Msa0791870:intron | 45.0% |
| AGAATTGCGTCGAGCAAAGT+TGG | - | chr5_3:2952738-2952757 | Msa0791870:intron | 45.0% | |
| CAGAAAACCTAATACTCCGG+TGG | - | chr5_3:2952764-2952783 | Msa0791870:intron | 45.0% | |
| AAAACCTAATACTCCGGTGG+TGG | - | chr5_3:2952767-2952786 | Msa0791870:intron | 45.0% | |
| AATATACGTAAAGCCCCCGT+TGG | - | chr5_3:2952873-2952892 | Msa0791870:CDS | 45.0% | |
| AACCAAACGTAGCATACGAC+GGG | - | chr5_3:2953497-2953516 | Msa0791870:intron | 45.0% | |
| CGTGTATTCTCTGCTCACAA+TGG | - | chr5_3:2953837-2953856 | Msa0791870:intron | 45.0% | |
| TAGAAACAAATCCCCGGAGT+TGG | - | chr5_3:2953860-2953879 | Msa0791870:intron | 45.0% | |
| AGAAACAAATCCCCGGAGTT+GGG | - | chr5_3:2953861-2953880 | Msa0791870:intron | 45.0% | |
| ! | ACACATTAGTCTCGGCATTG+TGG | + | chr5_3:2953892-2953911 | None:intergenic | 45.0% |
| GATTGTAGGTTGTCCTGATG+TGG | - | chr5_3:2953921-2953940 | Msa0791870:intron | 45.0% | |
| CCATCAAATTCCTCCACATC+AGG | + | chr5_3:2953937-2953956 | None:intergenic | 45.0% | |
| CCTGATGTGGAGGAATTTGA+TGG | - | chr5_3:2953934-2953953 | Msa0791870:intron | 45.0% | |
| !! | CATTTGGTGTTTATTGGGGC+TGG | - | chr5_3:2953961-2953980 | Msa0791870:intron | 45.0% |
| GAGGTTCAGCTGCAATTGAA+AGG | - | chr5_3:2954345-2954364 | Msa0791870:intron | 45.0% | |
| TTCAGCTGCAATTGAAAGGG+CGG | - | chr5_3:2954349-2954368 | Msa0791870:intron | 45.0% | |
| TGCAATTGAAAGGGCGGTTA+AGG | - | chr5_3:2954355-2954374 | Msa0791870:intron | 45.0% | |
| ! | GTTAAGGCACCAACTATTGC+CGG | - | chr5_3:2954371-2954390 | Msa0791870:CDS | 45.0% |
| GCTTTGTCCCGGTAAATAGT+AGG | + | chr5_3:2954409-2954428 | None:intergenic | 45.0% | |
| ACAGGTACAGAGATGGACAT+TGG | + | chr5_3:2954584-2954603 | None:intergenic | 45.0% | |
| GGGTACAGCTGGAACAAAAG+GGG | - | chr5_3:2951225-2951244 | Msa0791870:CDS | 50.0% | |
| AGAAAAGGAAGAAGGGGTCC+AGG | - | chr5_3:2951259-2951278 | Msa0791870:CDS | 50.0% | |
| GAAAAGGAAGAAGGGGTCCA+GGG | - | chr5_3:2951260-2951279 | Msa0791870:CDS | 50.0% | |
| !! | GAGCGGCTTTTTCTCAGCTT+TGG | - | chr5_3:2951347-2951366 | Msa0791870:CDS | 50.0% |
| AGCCACACATTGTGTCATGG+TGG | - | chr5_3:2952635-2952654 | Msa0791870:intron | 50.0% | |
| CTCCACCATGACACAATGTG+TGG | + | chr5_3:2952640-2952659 | None:intergenic | 50.0% | |
| ! | GCAAGATGGTTCTACCTACG+TGG | - | chr5_3:2953664-2953683 | Msa0791870:intron | 50.0% |
| ATTGTGGTCCTACCCAACTC+CGG | + | chr5_3:2953876-2953895 | None:intergenic | 50.0% | |
| TGTAGGTTGTCCTGATGTGG+AGG | - | chr5_3:2953924-2953943 | Msa0791870:intron | 50.0% | |
| GATGCGTTGTGGAACACCAA+CGG | - | chr5_3:2954277-2954296 | Msa0791870:intron | 50.0% | |
| ATGCGTTGTGGAACACCAAC+GGG | - | chr5_3:2954278-2954297 | Msa0791870:intron | 50.0% | |
| TTGTGGAACACCAACGGGTA+AGG | - | chr5_3:2954283-2954302 | Msa0791870:intron | 50.0% | |
| ACTGCATTCTCCTTACCCGT+TGG | + | chr5_3:2954296-2954315 | None:intergenic | 50.0% | |
| CAGCATTGCTCGAGTTATGC+CGG | - | chr5_3:2954318-2954337 | Msa0791870:intron | 50.0% | |
| ACGTCTAGATCGCTTTGTCC+CGG | + | chr5_3:2954420-2954439 | None:intergenic | 50.0% | |
| AGGGATTCAAGCTTTGCTGC+AGG | - | chr5_3:2954545-2954564 | Msa0791870:intron | 50.0% | |
| GGGATTCAAGCTTTGCTGCA+GGG | - | chr5_3:2954546-2954565 | Msa0791870:intron | 50.0% | |
| GGATTCAAGCTTTGCTGCAG+GGG | - | chr5_3:2954547-2954566 | Msa0791870:intron | 50.0% | |
| ! | AGGGGTCCAGGGAGTGTAAT+TGG | - | chr5_3:2951271-2951290 | Msa0791870:CDS | 55.0% |
| ! | GAAGCATTTGCAGCCACCAC+CGG | + | chr5_3:2952783-2952802 | None:intergenic | 55.0% |
| ACGCTCCATCTGAGCACCAA+CGG | + | chr5_3:2952892-2952911 | None:intergenic | 55.0% | |
| TGCCCGTCGTATGCTACGTT+TGG | + | chr5_3:2953502-2953521 | None:intergenic | 55.0% | |
| ACGTAGCATACGACGGGCAA+CGG | - | chr5_3:2953503-2953522 | Msa0791870:intron | 55.0% | |
| ACAAATCCCCGGAGTTGGGT+AGG | - | chr5_3:2953865-2953884 | Msa0791870:intron | 55.0% | |
| TTGTGGTCCTACCCAACTCC+GGG | + | chr5_3:2953875-2953894 | None:intergenic | 55.0% | |
| TTGCTCGAGTTATGCCGGAG+TGG | - | chr5_3:2954323-2954342 | Msa0791870:intron | 55.0% | |
| TTGCAGCTGAACCTCCACTC+CGG | + | chr5_3:2954340-2954359 | None:intergenic | 55.0% | |
| ! | GCAGCCACCACCGGAGTATT+AGG | + | chr5_3:2952774-2952793 | None:intergenic | 60.0% |
| CTCCATCTGAGCACCAACGG+GGG | + | chr5_3:2952889-2952908 | None:intergenic | 60.0% | |
| GCTCCATCTGAGCACCAACG+GGG | + | chr5_3:2952890-2952909 | None:intergenic | 60.0% | |
| CGCTCCATCTGAGCACCAAC+GGG | + | chr5_3:2952891-2952910 | None:intergenic | 60.0% | |
| TGTGGTCCTACCCAACTCCG+GGG | + | chr5_3:2953874-2953893 | None:intergenic | 60.0% | |
| CTCGAGTTATGCCGGAGTGG+AGG | - | chr5_3:2954326-2954345 | Msa0791870:intron | 60.0% | |
| ! | AGCCCCCGTTGGTGCTCAGA+TGG | - | chr5_3:2952884-2952903 | Msa0791870:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 2951178 | 2954607 | 2951178 | ID=Msa0791870;Name=Msa0791870 |
| chr5_3 | mRNA | 2951178 | 2954607 | 2951178 | ID=Msa0791870-mRNA-1;Parent=Msa0791870;Name=Msa0791870-mRNA-1;_AED=0.15;_eAED=0.18;_QI=0|0|0|1|0.4|0.33|6|0|310 |
| chr5_3 | exon | 2954572 | 2954607 | 2954572 | ID=Msa0791870-mRNA-1:exon:1243;Parent=Msa0791870-mRNA-1 |
| chr5_3 | exon | 2954364 | 2954559 | 2954364 | ID=Msa0791870-mRNA-1:exon:1242;Parent=Msa0791870-mRNA-1 |
| chr5_3 | exon | 2952853 | 2953091 | 2952853 | ID=Msa0791870-mRNA-1:exon:1241;Parent=Msa0791870-mRNA-1 |
| chr5_3 | exon | 2952343 | 2952378 | 2952343 | ID=Msa0791870-mRNA-1:exon:1240;Parent=Msa0791870-mRNA-1 |
| chr5_3 | exon | 2952235 | 2952322 | 2952235 | ID=Msa0791870-mRNA-1:exon:1239;Parent=Msa0791870-mRNA-1 |
| chr5_3 | exon | 2951178 | 2951512 | 2951178 | ID=Msa0791870-mRNA-1:exon:1238;Parent=Msa0791870-mRNA-1 |
| chr5_3 | CDS | 2954572 | 2954607 | 2954572 | ID=Msa0791870-mRNA-1:cds;Parent=Msa0791870-mRNA-1 |
| chr5_3 | CDS | 2954364 | 2954559 | 2954364 | ID=Msa0791870-mRNA-1:cds;Parent=Msa0791870-mRNA-1 |
| chr5_3 | CDS | 2952853 | 2953091 | 2952853 | ID=Msa0791870-mRNA-1:cds;Parent=Msa0791870-mRNA-1 |
| chr5_3 | CDS | 2952343 | 2952378 | 2952343 | ID=Msa0791870-mRNA-1:cds;Parent=Msa0791870-mRNA-1 |
| chr5_3 | CDS | 2952235 | 2952322 | 2952235 | ID=Msa0791870-mRNA-1:cds;Parent=Msa0791870-mRNA-1 |
| chr5_3 | CDS | 2951178 | 2951512 | 2951178 | ID=Msa0791870-mRNA-1:cds;Parent=Msa0791870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
