Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312590 | sp|Q9C7R6|PUB17_ARATH | 66.372 | 113 | 33 | 2 | 197 | 309 | 619 | 726 | 4.52e-37 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312590 | G7L051 | 55.522 | 335 | 44 | 7 | 1 | 250 | 65 | 379 | 8.32e-100 | 307 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0791870 | Msa1312590 | 0.998035 | 1.295537e-254 | -8.615850e-47 |
| Msa0811200 | Msa1312590 | 0.801468 | 8.879143e-49 | -8.615850e-47 |
| Msa0325430 | Msa1312590 | 0.936066 | 3.140354e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312590 | MtrunA17_Chr2g0284461 | 91.228 | 114 | 10 | 0 | 197 | 310 | 607 | 720 | 1.81e-62 | 210 |
| Msa1312590 | MtrunA17_Chr3g0139641 | 90.625 | 96 | 9 | 0 | 201 | 296 | 37 | 132 | 1.46e-53 | 172 |
| Msa1312590 | MtrunA17_Chr5g0397801 | 49.432 | 176 | 56 | 5 | 78 | 244 | 8 | 159 | 4.95e-37 | 133 |
| Msa1312590 | MtrunA17_Chr2g0314681 | 67.000 | 100 | 21 | 2 | 12 | 102 | 132 | 228 | 8.15e-31 | 118 |
| Msa1312590 | MtrunA17_Chr8g0386391 | 88.136 | 59 | 7 | 0 | 78 | 136 | 8 | 66 | 1.03e-29 | 107 |
| Msa1312590 | MtrunA17_Chr7g0235141 | 85.455 | 55 | 8 | 0 | 196 | 250 | 1 | 55 | 1.01e-25 | 97.1 |
| Msa1312590 | MtrunA17_Chr8g0386401 | 75.926 | 54 | 6 | 1 | 148 | 194 | 1 | 54 | 2.06e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1312590 | AT1G29340.1 | 66.372 | 113 | 33 | 2 | 197 | 309 | 619 | 726 | 4.59e-38 | 143 |
| Msa1312590 | AT4G20330.1 | 46.111 | 180 | 77 | 3 | 78 | 248 | 8 | 176 | 8.17e-33 | 122 |
| Msa1312590 | AT1G78620.1 | 65.476 | 84 | 20 | 1 | 12 | 86 | 141 | 224 | 1.54e-24 | 101 |
| Msa1312590 | AT1G78620.2 | 66.265 | 83 | 19 | 1 | 13 | 86 | 151 | 233 | 2.87e-24 | 101 |
| Msa1312590 | AT4G21010.1 | 52.419 | 124 | 48 | 3 | 78 | 194 | 8 | 127 | 1.84e-23 | 97.8 |
Find 71 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTACATTATGGTGTATT+AGG | 0.247651 | 8_4:-9669392 | Msa1312590:CDS |
| CTCTTACAAGATAATCTTTA+CGG | 0.253454 | 8_4:-9670349 | Msa1312590:CDS |
| GCAGCCACCACCGGAGTATT+AGG | 0.268237 | 8_4:+9671106 | None:intergenic |
| AGGGGTCCAGGGAGTGTAAT+TGG | 0.309595 | 8_4:-9672606 | Msa1312590:CDS |
| CTTCAAACCCTACTATTTAC+CGG | 0.331149 | 8_4:-9669479 | Msa1312590:CDS |
| TACTTTAGAGTTGATTGGTT+TGG | 0.363493 | 8_4:-9672685 | Msa1312590:intron |
| CGCTCCATCTGAGCACCAAC+GGG | 0.368841 | 8_4:+9670989 | None:intergenic |
| CATACTTCATTTATTTGCTC+TGG | 0.378031 | 8_4:+9670452 | None:intergenic |
| GCTTTGTCCCGGTAAATAGT+AGG | 0.385439 | 8_4:+9669471 | None:intergenic |
| TCTTACAAGATAATCTTTAC+GGG | 0.394215 | 8_4:-9670348 | Msa1312590:intron |
| TGCAATTGAAAGGGCGGTTA+AGG | 0.401505 | 8_4:-9669522 | Msa1312590:CDS |
| TGCCCGTCGTATGCTACGTT+TGG | 0.409026 | 8_4:+9670378 | None:intergenic |
| GAAAATGCATCTCTACATTA+TGG | 0.412312 | 8_4:-9669401 | Msa1312590:CDS |
| CTAGCAATTCAGCTCAAACT+AGG | 0.421052 | 8_4:-9669352 | Msa1312590:CDS |
| AGAAAAGGAAGAAGGGGTCC+AGG | 0.424572 | 8_4:-9672618 | Msa1312590:CDS |
| GTGTTTGTTTAGGGTACAGC+TGG | 0.432468 | 8_4:-9672663 | Msa1312590:intron |
| GTATTATACCACTATATTAC+AGG | 0.432916 | 8_4:+9669278 | None:intergenic |
| ATGCGTTGTGGAACACCAAC+GGG | 0.433508 | 8_4:-9669599 | Msa1312590:CDS |
| GTTAAGGCACCAACTATTGC+CGG | 0.433899 | 8_4:-9669506 | Msa1312590:CDS |
| GCTGCAAATGCTTCATCAAA+TGG | 0.435679 | 8_4:-9671088 | Msa1312590:CDS |
| TAGGGTACAGCTGGAACAAA+AGG | 0.436184 | 8_4:-9672654 | Msa1312590:CDS |
| TAGTAGGGTTTGAAGTAATC+CGG | 0.457922 | 8_4:+9669487 | None:intergenic |
| TTTCTCAGCTTTGGAGACTT+GGG | 0.460386 | 8_4:-9672521 | Msa1312590:CDS |
| CTGAGAAAAGAAAAGGAAGA+AGG | 0.478719 | 8_4:-9672626 | Msa1312590:CDS |
| AGGGATTCAAGCTTTGCTGC+AGG | 0.485529 | 8_4:-9669332 | Msa1312590:CDS |
| AGAATTGCGTCGAGCAAAGT+TGG | 0.491272 | 8_4:-9671139 | Msa1312590:CDS |
| CAGCATTGCTCGAGTTATGC+CGG | 0.494015 | 8_4:-9669559 | Msa1312590:CDS |
| CTTTGTCCCGGTAAATAGTA+GGG | 0.497495 | 8_4:+9669472 | None:intergenic |
| TTCAAACCCTACTATTTACC+GGG | 0.497622 | 8_4:-9669478 | Msa1312590:CDS |
| GGGGTTGCTGAGAAAAGAAA+AGG | 0.497980 | 8_4:-9672633 | Msa1312590:CDS |
| TGAAGTAATCCGGCAATAGT+TGG | 0.499205 | 8_4:+9669497 | None:intergenic |
| CTATATCCAATTACACTCCC+TGG | 0.511289 | 8_4:+9672600 | None:intergenic |
| GAGGTTCAGCTGCAATTGAA+AGG | 0.514449 | 8_4:-9669532 | Msa1312590:CDS |
| GGATTCAAGCTTTGCTGCAG+GGG | 0.516848 | 8_4:-9669330 | Msa1312590:CDS |
| GGGATTCAAGCTTTGCTGCA+GGG | 0.523093 | 8_4:-9669331 | Msa1312590:CDS |
| TTGTGGAACACCAACGGGTA+AGG | 0.525498 | 8_4:-9669594 | Msa1312590:CDS |
| AGGGTACAGCTGGAACAAAA+GGG | 0.526901 | 8_4:-9672653 | Msa1312590:CDS |
| GAAGCATTTGCAGCCACCAC+CGG | 0.530483 | 8_4:+9671097 | None:intergenic |
| ACGTCTAGATCGCTTTGTCC+CGG | 0.534083 | 8_4:+9669460 | None:intergenic |
| TAGCAATTCAGCTCAAACTA+GGG | 0.535704 | 8_4:-9669351 | Msa1312590:CDS |
| GAGGAAAGCACAAACGCAAT+CGG | 0.535952 | 8_4:+9672572 | None:intergenic |
| TGAGACTGTGTCACTCAACT+TGG | 0.545176 | 8_4:+9672479 | None:intergenic |
| CATTATGGTGTATTAGGTGT+AGG | 0.552166 | 8_4:-9669386 | Msa1312590:CDS |
| GAAAAGGAAGAAGGGGTCCA+GGG | 0.558281 | 8_4:-9672617 | Msa1312590:CDS |
| TGTTATTGATCTATTGCTTG+AGG | 0.558507 | 8_4:-9670966 | Msa1312590:intron |
| AACCAAACGTAGCATACGAC+GGG | 0.560461 | 8_4:-9670380 | Msa1312590:CDS |
| ACGCTCCATCTGAGCACCAA+CGG | 0.570793 | 8_4:+9670988 | None:intergenic |
| TGAGAAAAGAAAAGGAAGAA+GGG | 0.576058 | 8_4:-9672625 | Msa1312590:CDS |
| ACGTAGCATACGACGGGCAA+CGG | 0.576494 | 8_4:-9670374 | Msa1312590:CDS |
| ACTGCATTCTCCTTACCCGT+TGG | 0.580022 | 8_4:+9669584 | None:intergenic |
| AAAACCTAATACTCCGGTGG+TGG | 0.582600 | 8_4:-9671110 | Msa1312590:CDS |
| AGGTTCAGCTGCAATTGAAA+GGG | 0.584279 | 8_4:-9669531 | Msa1312590:CDS |
| CTCGAGTTATGCCGGAGTGG+AGG | 0.588750 | 8_4:-9669551 | Msa1312590:CDS |
| TAGCAGAAAACCTAATACTC+CGG | 0.589094 | 8_4:-9671116 | Msa1312590:CDS |
| GATGCGTTGTGGAACACCAA+CGG | 0.591442 | 8_4:-9669600 | Msa1312590:CDS |
| AAGATGTTTCTGAGAGTCTG+AGG | 0.594174 | 8_4:-9670407 | Msa1312590:CDS |
| ATTAGGTGTAGGCTATGCAT+TGG | 0.596170 | 8_4:-9669375 | Msa1312590:CDS |
| AAACCAAACGTAGCATACGA+CGG | 0.608927 | 8_4:-9670381 | Msa1312590:CDS |
| TTCAGCTGCAATTGAAAGGG+CGG | 0.609680 | 8_4:-9669528 | Msa1312590:CDS |
| CTATATTACAGGTACAGAGA+TGG | 0.627725 | 8_4:+9669289 | None:intergenic |
| GGGTACAGCTGGAACAAAAG+GGG | 0.630163 | 8_4:-9672652 | Msa1312590:CDS |
| GAGAAAAGAAAAGGAAGAAG+GGG | 0.634746 | 8_4:-9672624 | Msa1312590:CDS |
| ACAGGTACAGAGATGGACAT+TGG | 0.635671 | 8_4:+9669296 | None:intergenic |
| AAACACTATAGCAAGTGAAG+CGG | 0.655689 | 8_4:+9669433 | None:intergenic |
| AATTCTCAAATGATACTGAG+AGG | 0.667400 | 8_4:-9671042 | Msa1312590:CDS |
| TTGCAGCTGAACCTCCACTC+CGG | 0.668193 | 8_4:+9669540 | None:intergenic |
| CTCCATCTGAGCACCAACGG+GGG | 0.668583 | 8_4:+9670991 | None:intergenic |
| TTGCTCGAGTTATGCCGGAG+TGG | 0.674659 | 8_4:-9669554 | Msa1312590:CDS |
| TTGATAGGAATGATGCGTTG+TGG | 0.684688 | 8_4:-9669611 | Msa1312590:intron |
| GCTCCATCTGAGCACCAACG+GGG | 0.691668 | 8_4:+9670990 | None:intergenic |
| CAGAAAACCTAATACTCCGG+TGG | 0.697637 | 8_4:-9671113 | Msa1312590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTAATCCATTTTATT+GGG | + | chr8_4:9670148-9670167 | None:intergenic | 10.0% |
| !!! | AAAATATTAATCCATTTTAT+TGG | + | chr8_4:9670149-9670168 | None:intergenic | 10.0% |
| !!! | ATTAATATTTTACTGAATAA+GGG | - | chr8_4:9670158-9670177 | Msa1312590:intron | 10.0% |
| !!! | AACATTAAGTTTTGAATTTT+AGG | - | chr8_4:9669852-9669871 | Msa1312590:intron | 15.0% |
| !!! | ATATTTGAATTTTTAGTTAG+TGG | - | chr8_4:9670113-9670132 | Msa1312590:intron | 15.0% |
| !!! | GATTAATATTTTACTGAATA+AGG | - | chr8_4:9670157-9670176 | Msa1312590:intron | 15.0% |
| !! | ATGAAAAAAAAATGAAACAT+TGG | + | chr8_4:9670250-9670269 | None:intergenic | 15.0% |
| !!! | TTTCTTCTACATTATTTTAA+TGG | - | chr8_4:9671756-9671775 | Msa1312590:intron | 15.0% |
| !!! | TTTTATACTTTAGAGTTGAT+TGG | - | chr8_4:9669301-9669320 | Msa1312590:CDS | 20.0% |
| !! | TGTTTCATTGTGTTAAAAAT+TGG | - | chr8_4:9669780-9669799 | Msa1312590:intron | 20.0% |
| !! | GTTTCATTGTGTTAAAAATT+GGG | - | chr8_4:9669781-9669800 | Msa1312590:intron | 20.0% |
| !! | ATTAAAGTATGCTAAACAAT+TGG | - | chr8_4:9669918-9669937 | Msa1312590:intron | 20.0% |
| !! | TTTACAGAGAAATAAACAAA+TGG | + | chr8_4:9670280-9670299 | None:intergenic | 20.0% |
| !!! | TTTTAATTATTGTTAGTGAC+TGG | - | chr8_4:9671090-9671109 | Msa1312590:CDS | 20.0% |
| !!! | TATTAGTTTCAATTTGCAAT+TGG | + | chr8_4:9671257-9671276 | None:intergenic | 20.0% |
| !! | CAAATTGAAACTAATATGTT+TGG | - | chr8_4:9671261-9671280 | Msa1312590:intron | 20.0% |
| !! | TGAACAAAGAAAAAAATTGA+TGG | + | chr8_4:9672287-9672306 | None:intergenic | 20.0% |
| !!! | ATCAATTTTTTTCTTTGTTC+AGG | - | chr8_4:9672286-9672305 | Msa1312590:intron | 20.0% |
| !!! | TAGTCAACTCTTTCTTTTTT+TGG | - | chr8_4:9669572-9669591 | Msa1312590:CDS | 25.0% |
| !! | TAGATATATGTTAGTTTCCA+AGG | - | chr8_4:9669596-9669615 | Msa1312590:CDS | 25.0% |
| !!! | AGTTTTAAGTATGAAGTTCA+GGG | + | chr8_4:9669628-9669647 | None:intergenic | 25.0% |
| !!! | ATTTGGTTTTGATTCCAAAT+TGG | - | chr8_4:9669813-9669832 | Msa1312590:intron | 25.0% |
| !!! | TTTGGTTTTGATTCCAAATT+GGG | - | chr8_4:9669814-9669833 | Msa1312590:intron | 25.0% |
| !! | GTTTAGCATACTTTAATTTC+AGG | + | chr8_4:9669915-9669934 | None:intergenic | 25.0% |
| ! | GTTTCAAAAATTCCAAATCA+TGG | + | chr8_4:9670027-9670046 | None:intergenic | 25.0% |
| ! | GTTCAAATGCACAATTTATT+TGG | - | chr8_4:9670065-9670084 | Msa1312590:intron | 25.0% |
| !! | TGTACAAATGTTTGAAACTT+TGG | - | chr8_4:9670556-9670575 | Msa1312590:intron | 25.0% |
| !!! | AGAGAAAGTACAAACTTTTT+GGG | + | chr8_4:9670600-9670619 | None:intergenic | 25.0% |
| ! | AATGGAAGAAATTCAAAAAC+TGG | - | chr8_4:9670921-9670940 | Msa1312590:intron | 25.0% |
| !! | ATTTCTCAATATGTTTTGCT+GGG | + | chr8_4:9671365-9671384 | None:intergenic | 25.0% |
| !! | AATTTCTCAATATGTTTTGC+TGG | + | chr8_4:9671366-9671385 | None:intergenic | 25.0% |
| !! | TCGTTAAAACCATATTGATT+TGG | - | chr8_4:9671479-9671498 | Msa1312590:intron | 25.0% |
| ! | CTCTTACAAGATAATCTTTA+CGG | - | chr8_4:9671642-9671661 | Msa1312590:intron | 25.0% |
| ! | TCTTACAAGATAATCTTTAC+GGG | - | chr8_4:9671643-9671662 | Msa1312590:intron | 25.0% |
| !! | ATGAAGAAGTTATTTGCTAA+AGG | + | chr8_4:9671703-9671722 | None:intergenic | 25.0% |
| !!! | ACATTATTTTAATGGCAAGA+TGG | - | chr8_4:9671764-9671783 | Msa1312590:intron | 25.0% |
| !!! | GCATTTGTTATAACTTCATA+AGG | + | chr8_4:9672108-9672127 | None:intergenic | 25.0% |
| !! | TTCAGAAGAGTATATTGAAA+AGG | + | chr8_4:9672135-9672154 | None:intergenic | 25.0% |
| ! | AAAGTTTATCACTGCAAATT+AGG | + | chr8_4:9672231-9672250 | None:intergenic | 25.0% |
| !!! | ATCTTTTTGTTTGCTTTGTT+TGG | - | chr8_4:9672356-9672375 | Msa1312590:intron | 25.0% |
| !! | TACTTTAGAGTTGATTGGTT+TGG | - | chr8_4:9669306-9669325 | Msa1312590:CDS | 30.0% |
| !! | ATTGGTTTGGTGTTTGTTTA+GGG | - | chr8_4:9669319-9669338 | Msa1312590:CDS | 30.0% |
| TGAGAAAAGAAAAGGAAGAA+GGG | - | chr8_4:9669366-9669385 | Msa1312590:CDS | 30.0% | |
| !!! | GAGTTTTAAGTATGAAGTTC+AGG | + | chr8_4:9669629-9669648 | None:intergenic | 30.0% |
| AAAAGTTTGATATCCATCGA+AGG | + | chr8_4:9669651-9669670 | None:intergenic | 30.0% | |
| ! | TGTCCTGTTTGAAATTAAAG+TGG | - | chr8_4:9669692-9669711 | Msa1312590:intron | 30.0% |
| ! | GTTCCACTTTAATTTCAAAC+AGG | + | chr8_4:9669698-9669717 | None:intergenic | 30.0% |
| GAAATTAAAGTGGAACAAGA+AGG | - | chr8_4:9669702-9669721 | Msa1312590:intron | 30.0% | |
| !! | ATTGTTTGTTAGCCTTTGTT+TGG | - | chr8_4:9669740-9669759 | Msa1312590:intron | 30.0% |
| CACAATGAAACAATCATCAA+TGG | + | chr8_4:9669772-9669791 | None:intergenic | 30.0% | |
| !! | AAATTGGGTTGACATTCATT+TGG | - | chr8_4:9669796-9669815 | Msa1312590:intron | 30.0% |
| AACTTAATGTTGTTGCACAT+GGG | + | chr8_4:9669843-9669862 | None:intergenic | 30.0% | |
| AAACTTAATGTTGTTGCACA+TGG | + | chr8_4:9669844-9669863 | None:intergenic | 30.0% | |
| CCATTGAACATGTTTATCAA+AGG | + | chr8_4:9669961-9669980 | None:intergenic | 30.0% | |
| CCTTTGATAAACATGTTCAA+TGG | - | chr8_4:9669958-9669977 | Msa1312590:intron | 30.0% | |
| !!! | ATAAGGGTTTTGAAGTTTGT+AGG | - | chr8_4:9670174-9670193 | Msa1312590:intron | 30.0% |
| ! | TTTGAAGTTTGTAGGATTGA+TGG | - | chr8_4:9670182-9670201 | Msa1312590:intron | 30.0% |
| ATATCATAGTTCCAATCTCA+CGG | + | chr8_4:9670210-9670229 | None:intergenic | 30.0% | |
| ! | GAACTATGATATAAAAGTGC+AGG | - | chr8_4:9670218-9670237 | Msa1312590:intron | 30.0% |
| TTCCTTTGTGCATATTTAGA+AGG | - | chr8_4:9670365-9670384 | Msa1312590:CDS | 30.0% | |
| ATCCTTCTAAATATGCACAA+AGG | + | chr8_4:9670370-9670389 | None:intergenic | 30.0% | |
| TTTGTGCATATTTAGAAGGA+TGG | - | chr8_4:9670369-9670388 | Msa1312590:CDS | 30.0% | |
| CCAACAATTTCTGATTCAAA+TGG | + | chr8_4:9670426-9670445 | None:intergenic | 30.0% | |
| CCATTTGAATCAGAAATTGT+TGG | - | chr8_4:9670423-9670442 | Msa1312590:intron | 30.0% | |
| ATACATGGTGATATCATGTA+TGG | - | chr8_4:9670470-9670489 | Msa1312590:CDS | 30.0% | |
| CATGTATGGAACATTAAGAA+AGG | - | chr8_4:9670484-9670503 | Msa1312590:intron | 30.0% | |
| ! | GTTTGAAACTTTGGATACTT+CGG | - | chr8_4:9670565-9670584 | Msa1312590:intron | 30.0% |
| !! | AGTACAAACTTTTTGGGAAA+AGG | + | chr8_4:9670594-9670613 | None:intergenic | 30.0% |
| !! | CAGAGAAAGTACAAACTTTT+TGG | + | chr8_4:9670601-9670620 | None:intergenic | 30.0% |
| AAAGTTTGTACTTTCTCTGA+AGG | - | chr8_4:9670602-9670621 | Msa1312590:intron | 30.0% | |
| TCTGAAGGACTAATAGATTT+AGG | - | chr8_4:9670617-9670636 | Msa1312590:intron | 30.0% | |
| ! | GGTTTAATGAGTTATTTCAG+TGG | - | chr8_4:9670638-9670657 | Msa1312590:intron | 30.0% |
| AATTCTCAAATGATACTGAG+AGG | - | chr8_4:9670949-9670968 | Msa1312590:intron | 30.0% | |
| TGTTATTGATCTATTGCTTG+AGG | - | chr8_4:9671025-9671044 | Msa1312590:CDS | 30.0% | |
| ! | TCTATTGCTTGAGGTAATTT+TGG | - | chr8_4:9671034-9671053 | Msa1312590:CDS | 30.0% |
| TAATTATTGTTAGTGACTGG+CGG | - | chr8_4:9671093-9671112 | Msa1312590:CDS | 30.0% | |
| ! | GGTGACTTTTAAGCTATAAT+GGG | + | chr8_4:9671236-9671255 | None:intergenic | 30.0% |
| ! | TGGTGACTTTTAAGCTATAA+TGG | + | chr8_4:9671237-9671256 | None:intergenic | 30.0% |
| !! | AAACTAATATGTTTGGCTTG+TGG | - | chr8_4:9671268-9671287 | Msa1312590:intron | 30.0% |
| ACCAATGAATATCCACAATT+AGG | - | chr8_4:9671449-9671468 | Msa1312590:intron | 30.0% | |
| TCCTAATTGTGGATATTCAT+TGG | + | chr8_4:9671453-9671472 | None:intergenic | 30.0% | |
| AACGAATCAATTCCTAATTG+TGG | + | chr8_4:9671464-9671483 | None:intergenic | 30.0% | |
| !!! | ACCATATTGATTTGGTGTTT+TGG | - | chr8_4:9671487-9671506 | Msa1312590:intron | 30.0% |
| ACCAAAACACCAAATCAATA+TGG | + | chr8_4:9671491-9671510 | None:intergenic | 30.0% | |
| CATACTTCATTTATTTGCTC+TGG | + | chr8_4:9671542-9671561 | None:intergenic | 30.0% | |
| AAGTATGCTATGTTGATATG+AGG | - | chr8_4:9671555-9671574 | Msa1312590:intron | 30.0% | |
| ATTGAGATTTGTGTTGAAAG+TGG | - | chr8_4:9671863-9671882 | Msa1312590:intron | 30.0% | |
| ! | TACATAACACACATTAGTCT+CGG | + | chr8_4:9672014-9672033 | None:intergenic | 30.0% |
| TGTGTGTTATGTATGATTGT+AGG | - | chr8_4:9672021-9672040 | Msa1312590:intron | 30.0% | |
| !! | TTTGCTTTGTTTGGATTGAT+AGG | - | chr8_4:9672365-9672384 | Msa1312590:intron | 30.0% |
| GAAAATGCATCTCTACATTA+TGG | - | chr8_4:9672590-9672609 | Msa1312590:CDS | 30.0% | |
| TCTCTACATTATGGTGTATT+AGG | - | chr8_4:9672599-9672618 | Msa1312590:CDS | 30.0% | |
| !! | GATTGGTTTGGTGTTTGTTT+AGG | - | chr8_4:9669318-9669337 | Msa1312590:CDS | 35.0% |
| CTGAGAAAAGAAAAGGAAGA+AGG | - | chr8_4:9669365-9669384 | Msa1312590:CDS | 35.0% | |
| GAGAAAAGAAAAGGAAGAAG+GGG | - | chr8_4:9669367-9669386 | Msa1312590:CDS | 35.0% | |
| ! | TGTGCTTTCCTCACAATTTT+TGG | - | chr8_4:9669430-9669449 | Msa1312590:CDS | 35.0% |
| !!! | TTCCTCACAATTTTTGGAGT+TGG | - | chr8_4:9669436-9669455 | Msa1312590:CDS | 35.0% |
| CATACTTAAAACTCCTTCGA+TGG | - | chr8_4:9669635-9669654 | Msa1312590:intron | 35.0% | |
| CAATGGAAGTAACCAAACAA+AGG | + | chr8_4:9669755-9669774 | None:intergenic | 35.0% | |
| ATGTTCAATGGCATGTTACA+TGG | - | chr8_4:9669970-9669989 | Msa1312590:intron | 35.0% | |
| !! | CTTGATGATGAACCATGATT+TGG | - | chr8_4:9670012-9670031 | Msa1312590:intron | 35.0% |
| GAACAAAATATGACTGTGAG+TGG | + | chr8_4:9670049-9670068 | None:intergenic | 35.0% | |
| ! | GACTAAAGTGCCCAATAAAA+TGG | - | chr8_4:9670135-9670154 | Msa1312590:intron | 35.0% |
| TCAGAAATTGTTGGCAAGTT+TGG | - | chr8_4:9670432-9670451 | Msa1312590:intron | 35.0% | |
| CAGAAATTGTTGGCAAGTTT+GGG | - | chr8_4:9670433-9670452 | Msa1312590:intron | 35.0% | |
| ACAGCAGCACAATAATCTTA+AGG | - | chr8_4:9670522-9670541 | Msa1312590:intron | 35.0% | |
| GAAGCACATTTGAATGTTTG+TGG | - | chr8_4:9670773-9670792 | Msa1312590:intron | 35.0% | |
| TAGCAGAAAACCTAATACTC+CGG | - | chr8_4:9670875-9670894 | Msa1312590:intron | 35.0% | |
| !! | TGATTTTGATGCATGAGATG+AGG | - | chr8_4:9671127-9671146 | Msa1312590:CDS | 35.0% |
| !! | GATTTTGATGCATGAGATGA+GGG | - | chr8_4:9671128-9671147 | Msa1312590:CDS | 35.0% |
| !! | ATTTTGATGCATGAGATGAG+GGG | - | chr8_4:9671129-9671148 | Msa1312590:CDS | 35.0% |
| TAACCTCAAACTTAACAGCT+AGG | + | chr8_4:9671208-9671227 | None:intergenic | 35.0% | |
| TGAAGCTTCAACAAAATCAC+AGG | + | chr8_4:9671295-9671314 | None:intergenic | 35.0% | |
| !! | GTTTTGTTACCACTTTTGGA+AGG | - | chr8_4:9671800-9671819 | Msa1312590:intron | 35.0% |
| !! | ACTTTTGGAAGGAGATTTCA+GGG | - | chr8_4:9671811-9671830 | Msa1312590:intron | 35.0% |
| !! | GGACTCATTTGGTGTTTATT+GGG | - | chr8_4:9672070-9672089 | Msa1312590:intron | 35.0% |
| !! | GACTCATTTGGTGTTTATTG+GGG | - | chr8_4:9672071-9672090 | Msa1312590:intron | 35.0% |
| TGTTCCATTAGTGCAGTATT+AGG | - | chr8_4:9672173-9672192 | Msa1312590:intron | 35.0% | |
| AAGTCCTAATACTGCACTAA+TGG | + | chr8_4:9672180-9672199 | None:intergenic | 35.0% | |
| TTTGTTCAGGACTATTGAGT+CGG | - | chr8_4:9672299-9672318 | Msa1312590:intron | 35.0% | |
| ! | TAGTAGGGTTTGAAGTAATC+CGG | + | chr8_4:9672507-9672526 | None:intergenic | 35.0% |
| CTTCAAACCCTACTATTTAC+CGG | - | chr8_4:9672512-9672531 | Msa1312590:CDS | 35.0% | |
| TTCAAACCCTACTATTTACC+GGG | - | chr8_4:9672513-9672532 | Msa1312590:CDS | 35.0% | |
| AAACACTATAGCAAGTGAAG+CGG | + | chr8_4:9672561-9672580 | None:intergenic | 35.0% | |
| CATTATGGTGTATTAGGTGT+AGG | - | chr8_4:9672605-9672624 | Msa1312590:CDS | 35.0% | |
| TAGCAATTCAGCTCAAACTA+GGG | - | chr8_4:9672640-9672659 | Msa1312590:CDS | 35.0% | |
| CTATATCCAATTACACTCCC+TGG | + | chr8_4:9669394-9669413 | None:intergenic | 40.0% | |
| CTCCAACTCCAAAAATTGTG+AGG | + | chr8_4:9669441-9669460 | None:intergenic | 40.0% | |
| !!! | CTCACAATTTTTGGAGTTGG+AGG | - | chr8_4:9669439-9669458 | Msa1312590:CDS | 40.0% |
| !!! | AATTTTTGGAGTTGGAGGAG+CGG | - | chr8_4:9669444-9669463 | Msa1312590:CDS | 40.0% |
| !!! | TTTTCTCAGCTTTGGAGACT+TGG | - | chr8_4:9669469-9669488 | Msa1312590:CDS | 40.0% |
| !! | TTTCTCAGCTTTGGAGACTT+GGG | - | chr8_4:9669470-9669489 | Msa1312590:CDS | 40.0% |
| AGTGAGATAGGCAAAGCATA+TGG | - | chr8_4:9669535-9669554 | Msa1312590:CDS | 40.0% | |
| ACTAACGCTGCATATAGTGA+TGG | + | chr8_4:9670685-9670704 | None:intergenic | 40.0% | |
| GCACATTTGAATGTTTGTGG+CGG | - | chr8_4:9670776-9670795 | Msa1312590:intron | 40.0% | |
| GCTGCAAATGCTTCATCAAA+TGG | - | chr8_4:9670903-9670922 | Msa1312590:intron | 40.0% | |
| AAGCCTAGCTGTTAAGTTTG+AGG | - | chr8_4:9671202-9671221 | Msa1312590:intron | 40.0% | |
| ! | TCTCAATATGTTTTGCTGGG+CGG | + | chr8_4:9671362-9671381 | None:intergenic | 40.0% |
| !!! | TGGTGTTTTGGTTTGCTGAT+AGG | - | chr8_4:9671499-9671518 | Msa1312590:intron | 40.0% |
| ! | AAGATGTTTCTGAGAGTCTG+AGG | - | chr8_4:9671584-9671603 | Msa1312590:intron | 40.0% |
| AAACCAAACGTAGCATACGA+CGG | - | chr8_4:9671610-9671629 | Msa1312590:intron | 40.0% | |
| AAGTGGTAACAAAACCACGT+AGG | + | chr8_4:9671795-9671814 | None:intergenic | 40.0% | |
| !!! | CGTGGTTTTGTTACCACTTT+TGG | - | chr8_4:9671796-9671815 | Msa1312590:intron | 40.0% |
| CTGAAATCTCCTTCCAAAAG+TGG | + | chr8_4:9671812-9671831 | None:intergenic | 40.0% | |
| !! | CACTTTTGGAAGGAGATTTC+AGG | - | chr8_4:9671810-9671829 | Msa1312590:intron | 40.0% |
| AGATTTCAGGGTTGTTCTTC+AGG | - | chr8_4:9671823-9671842 | Msa1312590:intron | 40.0% | |
| GATTTCAGGGTTGTTCTTCA+GGG | - | chr8_4:9671824-9671843 | Msa1312590:intron | 40.0% | |
| ATTTCAGGGTTGTTCTTCAG+GGG | - | chr8_4:9671825-9671844 | Msa1312590:intron | 40.0% | |
| CAATGGTAGAAACAAATCCC+CGG | - | chr8_4:9671968-9671987 | Msa1312590:intron | 40.0% | |
| CTGATGTGGAGGAATTTGAT+GGG | - | chr8_4:9672049-9672068 | Msa1312590:intron | 40.0% | |
| GGAATTTGATGGGACTCATT+TGG | - | chr8_4:9672059-9672078 | Msa1312590:intron | 40.0% | |
| !! | GGGACTCATTTGGTGTTTAT+TGG | - | chr8_4:9672069-9672088 | Msa1312590:intron | 40.0% |
| TTGTTCAGGACTATTGAGTC+GGG | - | chr8_4:9672300-9672319 | Msa1312590:intron | 40.0% | |
| TTGATAGGAATGATGCGTTG+TGG | - | chr8_4:9672380-9672399 | Msa1312590:intron | 40.0% | |
| AGGTTCAGCTGCAATTGAAA+GGG | - | chr8_4:9672460-9672479 | Msa1312590:intron | 40.0% | |
| TGAAGTAATCCGGCAATAGT+TGG | + | chr8_4:9672497-9672516 | None:intergenic | 40.0% | |
| CTTTGTCCCGGTAAATAGTA+GGG | + | chr8_4:9672522-9672541 | None:intergenic | 40.0% | |
| ATTAGGTGTAGGCTATGCAT+TGG | - | chr8_4:9672616-9672635 | Msa1312590:CDS | 40.0% | |
| CTAGCAATTCAGCTCAAACT+AGG | - | chr8_4:9672639-9672658 | Msa1312590:CDS | 40.0% | |
| ! | GTGTTTGTTTAGGGTACAGC+TGG | - | chr8_4:9669328-9669347 | Msa1312590:CDS | 45.0% |
| TAGGGTACAGCTGGAACAAA+AGG | - | chr8_4:9669337-9669356 | Msa1312590:CDS | 45.0% | |
| AGGGTACAGCTGGAACAAAA+GGG | - | chr8_4:9669338-9669357 | Msa1312590:CDS | 45.0% | |
| GGGGTTGCTGAGAAAAGAAA+AGG | - | chr8_4:9669358-9669377 | Msa1312590:CDS | 45.0% | |
| ! | GAGGAAAGCACAAACGCAAT+CGG | + | chr8_4:9669422-9669441 | None:intergenic | 45.0% |
| ! | TGAGACTGTGTCACTCAACT+TGG | + | chr8_4:9669515-9669534 | None:intergenic | 45.0% |
| GACACAGTCTCAAGTGAGAT+AGG | - | chr8_4:9669523-9669542 | Msa1312590:CDS | 45.0% | |
| GAAGTTCAGGGTTTGATCCT+TGG | + | chr8_4:9669616-9669635 | None:intergenic | 45.0% | |
| TGCACATGGGAATCCCAATT+TGG | + | chr8_4:9669830-9669849 | None:intergenic | 45.0% | |
| ! | GATTGATGGTTCCGTGAGAT+TGG | - | chr8_4:9670196-9670215 | Msa1312590:intron | 45.0% |
| ! | GTAGCGCTGAAGAAGATACA+TGG | - | chr8_4:9670455-9670474 | Msa1312590:intron | 45.0% |
| TCAAGCCACACATTGTGTCA+TGG | - | chr8_4:9670746-9670765 | Msa1312590:intron | 45.0% | |
| ! | TTGTGGCGGAAAAGCTAGAT+AGG | - | chr8_4:9670790-9670809 | Msa1312590:intron | 45.0% |
| AGAATTGCGTCGAGCAAAGT+TGG | - | chr8_4:9670852-9670871 | Msa1312590:intron | 45.0% | |
| CAGAAAACCTAATACTCCGG+TGG | - | chr8_4:9670878-9670897 | Msa1312590:intron | 45.0% | |
| AAAACCTAATACTCCGGTGG+TGG | - | chr8_4:9670881-9670900 | Msa1312590:intron | 45.0% | |
| AATATACGTAAAGCCCCCGT+TGG | - | chr8_4:9670987-9671006 | Msa1312590:CDS | 45.0% | |
| AACCAAACGTAGCATACGAC+GGG | - | chr8_4:9671611-9671630 | Msa1312590:intron | 45.0% | |
| CGTGTATTCTCTGCTCACAA+TGG | - | chr8_4:9671951-9671970 | Msa1312590:intron | 45.0% | |
| TAGAAACAAATCCCCGGAGT+TGG | - | chr8_4:9671974-9671993 | Msa1312590:intron | 45.0% | |
| AGAAACAAATCCCCGGAGTT+GGG | - | chr8_4:9671975-9671994 | Msa1312590:intron | 45.0% | |
| ! | ACACATTAGTCTCGGCATTG+TGG | + | chr8_4:9672006-9672025 | None:intergenic | 45.0% |
| GATTGTAGGTTGTCCTGATG+TGG | - | chr8_4:9672035-9672054 | Msa1312590:intron | 45.0% | |
| CCATCAAATTCCTCCACATC+AGG | + | chr8_4:9672051-9672070 | None:intergenic | 45.0% | |
| CCTGATGTGGAGGAATTTGA+TGG | - | chr8_4:9672048-9672067 | Msa1312590:intron | 45.0% | |
| !! | CATTTGGTGTTTATTGGGGC+TGG | - | chr8_4:9672075-9672094 | Msa1312590:intron | 45.0% |
| GAGGTTCAGCTGCAATTGAA+AGG | - | chr8_4:9672459-9672478 | Msa1312590:intron | 45.0% | |
| TTCAGCTGCAATTGAAAGGG+CGG | - | chr8_4:9672463-9672482 | Msa1312590:intron | 45.0% | |
| TGCAATTGAAAGGGCGGTTA+AGG | - | chr8_4:9672469-9672488 | Msa1312590:intron | 45.0% | |
| ! | GTTAAGGCACCAACTATTGC+CGG | - | chr8_4:9672485-9672504 | Msa1312590:CDS | 45.0% |
| GCTTTGTCCCGGTAAATAGT+AGG | + | chr8_4:9672523-9672542 | None:intergenic | 45.0% | |
| ACAGGTACAGAGATGGACAT+TGG | + | chr8_4:9672698-9672717 | None:intergenic | 45.0% | |
| GGGTACAGCTGGAACAAAAG+GGG | - | chr8_4:9669339-9669358 | Msa1312590:CDS | 50.0% | |
| AGAAAAGGAAGAAGGGGTCC+AGG | - | chr8_4:9669373-9669392 | Msa1312590:CDS | 50.0% | |
| GAAAAGGAAGAAGGGGTCCA+GGG | - | chr8_4:9669374-9669393 | Msa1312590:CDS | 50.0% | |
| !! | GAGCGGCTTTTTCTCAGCTT+TGG | - | chr8_4:9669461-9669480 | Msa1312590:CDS | 50.0% |
| AGCCACACATTGTGTCATGG+TGG | - | chr8_4:9670749-9670768 | Msa1312590:intron | 50.0% | |
| CTCCACCATGACACAATGTG+TGG | + | chr8_4:9670754-9670773 | None:intergenic | 50.0% | |
| ! | GCAAGATGGTTCTACCTACG+TGG | - | chr8_4:9671778-9671797 | Msa1312590:intron | 50.0% |
| ATTGTGGTCCTACCCAACTC+CGG | + | chr8_4:9671990-9672009 | None:intergenic | 50.0% | |
| TGTAGGTTGTCCTGATGTGG+AGG | - | chr8_4:9672038-9672057 | Msa1312590:intron | 50.0% | |
| GATGCGTTGTGGAACACCAA+CGG | - | chr8_4:9672391-9672410 | Msa1312590:intron | 50.0% | |
| ATGCGTTGTGGAACACCAAC+GGG | - | chr8_4:9672392-9672411 | Msa1312590:intron | 50.0% | |
| TTGTGGAACACCAACGGGTA+AGG | - | chr8_4:9672397-9672416 | Msa1312590:intron | 50.0% | |
| ACTGCATTCTCCTTACCCGT+TGG | + | chr8_4:9672410-9672429 | None:intergenic | 50.0% | |
| CAGCATTGCTCGAGTTATGC+CGG | - | chr8_4:9672432-9672451 | Msa1312590:intron | 50.0% | |
| ACGTCTAGATCGCTTTGTCC+CGG | + | chr8_4:9672534-9672553 | None:intergenic | 50.0% | |
| AGGGATTCAAGCTTTGCTGC+AGG | - | chr8_4:9672659-9672678 | Msa1312590:intron | 50.0% | |
| GGGATTCAAGCTTTGCTGCA+GGG | - | chr8_4:9672660-9672679 | Msa1312590:intron | 50.0% | |
| GGATTCAAGCTTTGCTGCAG+GGG | - | chr8_4:9672661-9672680 | Msa1312590:intron | 50.0% | |
| ! | AGGGGTCCAGGGAGTGTAAT+TGG | - | chr8_4:9669385-9669404 | Msa1312590:CDS | 55.0% |
| ! | GAAGCATTTGCAGCCACCAC+CGG | + | chr8_4:9670897-9670916 | None:intergenic | 55.0% |
| ACGCTCCATCTGAGCACCAA+CGG | + | chr8_4:9671006-9671025 | None:intergenic | 55.0% | |
| TGCCCGTCGTATGCTACGTT+TGG | + | chr8_4:9671616-9671635 | None:intergenic | 55.0% | |
| ACGTAGCATACGACGGGCAA+CGG | - | chr8_4:9671617-9671636 | Msa1312590:intron | 55.0% | |
| ACAAATCCCCGGAGTTGGGT+AGG | - | chr8_4:9671979-9671998 | Msa1312590:intron | 55.0% | |
| TTGTGGTCCTACCCAACTCC+GGG | + | chr8_4:9671989-9672008 | None:intergenic | 55.0% | |
| TTGCTCGAGTTATGCCGGAG+TGG | - | chr8_4:9672437-9672456 | Msa1312590:intron | 55.0% | |
| TTGCAGCTGAACCTCCACTC+CGG | + | chr8_4:9672454-9672473 | None:intergenic | 55.0% | |
| ! | GCAGCCACCACCGGAGTATT+AGG | + | chr8_4:9670888-9670907 | None:intergenic | 60.0% |
| CTCCATCTGAGCACCAACGG+GGG | + | chr8_4:9671003-9671022 | None:intergenic | 60.0% | |
| GCTCCATCTGAGCACCAACG+GGG | + | chr8_4:9671004-9671023 | None:intergenic | 60.0% | |
| CGCTCCATCTGAGCACCAAC+GGG | + | chr8_4:9671005-9671024 | None:intergenic | 60.0% | |
| TGTGGTCCTACCCAACTCCG+GGG | + | chr8_4:9671988-9672007 | None:intergenic | 60.0% | |
| CTCGAGTTATGCCGGAGTGG+AGG | - | chr8_4:9672440-9672459 | Msa1312590:intron | 60.0% | |
| ! | AGCCCCCGTTGGTGCTCAGA+TGG | - | chr8_4:9670998-9671017 | Msa1312590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 9669292 | 9672721 | 9669292 | ID=Msa1312590;Name=Msa1312590 |
| chr8_4 | mRNA | 9669292 | 9672721 | 9669292 | ID=Msa1312590-mRNA-1;Parent=Msa1312590;Name=Msa1312590-mRNA-1;_AED=0.15;_eAED=0.18;_QI=0|0|0|1|0.4|0.33|6|0|310 |
| chr8_4 | exon | 9672686 | 9672721 | 9672686 | ID=Msa1312590-mRNA-1:exon:3637;Parent=Msa1312590-mRNA-1 |
| chr8_4 | exon | 9672478 | 9672673 | 9672478 | ID=Msa1312590-mRNA-1:exon:3636;Parent=Msa1312590-mRNA-1 |
| chr8_4 | exon | 9670967 | 9671205 | 9670967 | ID=Msa1312590-mRNA-1:exon:3635;Parent=Msa1312590-mRNA-1 |
| chr8_4 | exon | 9670457 | 9670492 | 9670457 | ID=Msa1312590-mRNA-1:exon:3634;Parent=Msa1312590-mRNA-1 |
| chr8_4 | exon | 9670349 | 9670436 | 9670349 | ID=Msa1312590-mRNA-1:exon:3633;Parent=Msa1312590-mRNA-1 |
| chr8_4 | exon | 9669292 | 9669626 | 9669292 | ID=Msa1312590-mRNA-1:exon:3632;Parent=Msa1312590-mRNA-1 |
| chr8_4 | CDS | 9672686 | 9672721 | 9672686 | ID=Msa1312590-mRNA-1:cds;Parent=Msa1312590-mRNA-1 |
| chr8_4 | CDS | 9672478 | 9672673 | 9672478 | ID=Msa1312590-mRNA-1:cds;Parent=Msa1312590-mRNA-1 |
| chr8_4 | CDS | 9670967 | 9671205 | 9670967 | ID=Msa1312590-mRNA-1:cds;Parent=Msa1312590-mRNA-1 |
| chr8_4 | CDS | 9670457 | 9670492 | 9670457 | ID=Msa1312590-mRNA-1:cds;Parent=Msa1312590-mRNA-1 |
| chr8_4 | CDS | 9670349 | 9670436 | 9670349 | ID=Msa1312590-mRNA-1:cds;Parent=Msa1312590-mRNA-1 |
| chr8_4 | CDS | 9669292 | 9669626 | 9669292 | ID=Msa1312590-mRNA-1:cds;Parent=Msa1312590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
