AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0793950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793950 MtrunA17_Chr5g0394901 99.035 622 6 0 1 622 1 622 0.0 1270
Msa0793950 MtrunA17_Chr1g0205121 81.833 622 74 2 1 622 1 583 0.0 1041
Msa0793950 MtrunA17_Chr7g0260081 58.871 620 182 12 1 616 1 551 0.0 677
Msa0793950 MtrunA17_Chr1g0185281 73.333 315 78 4 311 622 248 559 7.46e-158 464
Msa0793950 MtrunA17_Chr1g0185281 60.392 255 95 3 1 254 1 250 1.92e-95 303
Msa0793950 MtrunA17_Chr4g0054941 35.974 606 315 12 7 597 4 551 1.24e-117 362
Msa0793950 MtrunA17_Chr4g0054951 35.783 626 324 14 1 610 1 564 3.81e-117 360
Msa0793950 MtrunA17_Chr8g0382571 58.889 270 109 1 349 616 208 477 6.54e-112 344
Msa0793950 MtrunA17_Chr8g0382571 58.667 75 31 0 90 164 35 109 1.11e-22 101
Msa0793950 MtrunA17_Chr8g0355021 56.981 265 111 2 353 616 226 488 6.02e-105 326
Msa0793950 MtrunA17_Chr8g0355021 41.985 131 57 3 50 163 3 131 2.06e-22 100
Msa0793950 MtrunA17_Chr7g0263111 61.265 253 89 1 351 603 168 411 2.11e-104 323
Msa0793950 MtrunA17_Chr7g0263111 42.236 161 85 5 6 164 5 159 6.11e-27 114
Msa0793950 MtrunA17_Chr1g0201271 34.264 645 347 17 7 609 12 621 3.55e-93 300
Msa0793950 MtrunA17_Chr6g0466801 55.939 261 108 4 351 610 366 620 9.58e-92 296
Msa0793950 MtrunA17_Chr6g0466801 42.991 107 61 0 75 181 79 185 4.11e-21 97.8
Msa0793950 MtrunA17_Chr5g0400311 51.504 266 125 2 351 615 364 626 4.93e-87 283
Msa0793950 MtrunA17_Chr5g0400311 33.495 206 99 5 1 180 1 194 2.38e-25 110
Msa0793950 MtrunA17_Chr6g0479511 52.340 235 108 2 354 587 152 383 1.39e-84 270
Msa0793950 MtrunA17_Chr6g0479511 48.039 102 47 2 69 164 16 117 1.45e-20 94.4
Msa0793950 MtrunA17_Chr1g0165011 54.008 237 103 2 354 587 177 410 9.16e-84 270
Msa0793950 MtrunA17_Chr1g0165011 53.333 75 34 1 90 163 60 134 4.81e-17 84.3
Msa0793950 MtrunA17_Chr8g0375751 50.195 257 122 3 354 607 146 399 6.40e-80 259
Msa0793950 MtrunA17_Chr8g0375751 51.852 81 36 2 84 163 52 130 5.79e-18 86.7
Msa0793950 MtrunA17_Chr6g0452181 51.240 242 112 4 351 587 160 400 2.88e-78 255
Msa0793950 MtrunA17_Chr6g0452181 55.128 78 33 1 89 164 51 128 1.86e-18 88.6
Msa0793950 MtrunA17_Chr1g0189231 31.839 223 129 4 352 555 606 824 1.13e-28 122
Msa0793950 MtrunA17_Chr6g0488541 24.719 267 143 6 345 555 634 898 3.85e-20 95.5
Msa0793950 MtrunA17_Chr1g0154491 33.918 171 96 7 390 558 143 298 6.33e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793950 AT1G05470.2 72.713 634 144 11 1 622 1 617 0.0 892
Msa0793950 AT1G05470.1 72.713 634 144 11 1 622 1 617 0.0 892
Msa0793950 AT2G32010.2 71.680 625 143 9 1 622 1 594 0.0 864
Msa0793950 AT2G32010.1 71.680 625 143 9 1 622 1 594 0.0 864
Msa0793950 AT2G32010.4 71.680 625 143 9 1 622 1 594 0.0 864
Msa0793950 AT2G32010.3 71.680 625 143 9 1 622 1 594 0.0 864
Msa0793950 AT3G63240.2 56.501 623 190 12 1 620 1 545 0.0 655
Msa0793950 AT3G63240.1 56.501 623 190 12 1 620 1 545 0.0 655
Msa0793950 AT5G65090.2 57.353 272 113 1 348 616 193 464 5.95e-113 346
Msa0793950 AT5G65090.2 52.703 74 35 0 90 163 6 79 8.46e-20 93.2
Msa0793950 AT5G65090.3 57.353 272 113 1 348 616 256 527 4.29e-112 346
Msa0793950 AT5G65090.3 52.703 74 35 0 90 163 69 142 1.35e-19 93.2
Msa0793950 AT5G65090.1 57.353 272 113 1 348 616 256 527 4.29e-112 346
Msa0793950 AT5G65090.1 52.703 74 35 0 90 163 69 142 1.35e-19 93.2
Msa0793950 AT5G04980.4 63.485 241 87 1 353 592 156 396 1.18e-107 330
Msa0793950 AT5G04980.1 63.485 241 87 1 353 592 191 431 8.79e-107 329
Msa0793950 AT5G04980.1 57.353 68 29 0 91 158 6 73 5.04e-19 90.5
Msa0793950 AT5G04980.3 63.485 241 87 1 353 592 191 431 8.79e-107 329
Msa0793950 AT5G04980.3 57.353 68 29 0 91 158 6 73 5.04e-19 90.5
Msa0793950 AT5G04980.2 63.485 241 87 1 353 592 220 460 9.70e-107 330
Msa0793950 AT5G04980.2 57.353 68 29 0 91 158 35 102 5.67e-19 90.5
Msa0793950 AT2G37440.2 57.857 280 94 5 347 610 107 378 2.07e-104 322
Msa0793950 AT2G37440.2 50.476 105 32 2 96 181 1 104 1.05e-21 98.2
Msa0793950 AT2G37440.1 57.857 280 94 5 347 610 188 459 2.09e-103 322
Msa0793950 AT2G37440.1 40.000 180 81 4 8 178 6 167 5.72e-27 115
Msa0793950 AT2G37440.3 57.857 280 94 5 347 610 188 459 2.09e-103 322
Msa0793950 AT2G37440.3 40.000 180 81 4 8 178 6 167 5.72e-27 115
Msa0793950 AT4G18010.1 51.321 265 125 2 334 597 369 630 1.02e-87 286
Msa0793950 AT4G18010.1 45.631 103 52 1 77 179 94 192 1.94e-21 99.4
Msa0793950 AT2G01900.1 54.701 234 102 2 354 586 152 382 4.69e-84 270
Msa0793950 AT2G01900.1 51.389 72 34 1 93 163 57 128 1.76e-15 79.3
Msa0793950 AT2G01900.3 54.701 234 102 2 354 586 160 390 7.87e-84 270
Msa0793950 AT2G01900.3 51.389 72 34 1 93 163 65 136 1.78e-15 79.3
Msa0793950 AT1G34120.5 49.407 253 124 3 354 605 182 431 4.07e-83 268
Msa0793950 AT1G71710.2 49.425 261 126 3 351 610 396 651 2.71e-82 272
Msa0793950 AT1G71710.2 37.438 203 101 5 1 177 1 203 9.07e-26 112
Msa0793950 AT1G71710.1 49.425 261 126 3 351 610 405 660 3.17e-82 272
Msa0793950 AT1G71710.1 37.438 203 101 5 1 177 10 212 9.83e-26 112
Msa0793950 AT1G34120.1 49.407 253 124 3 354 605 333 582 5.16e-81 267
Msa0793950 AT1G34120.1 37.126 167 73 3 10 165 27 172 7.31e-22 100
Msa0793950 AT1G34120.2 49.407 253 124 3 354 605 337 586 6.18e-81 267
Msa0793950 AT1G34120.2 37.126 167 77 3 10 165 27 176 5.48e-22 100
Msa0793950 AT2G01900.2 52.991 234 97 3 354 586 152 373 9.20e-79 256
Msa0793950 AT2G01900.2 51.389 72 34 1 93 163 57 128 1.84e-15 79.3
Msa0793950 AT1G34120.3 49.012 253 124 4 354 605 337 585 1.72e-78 260
Msa0793950 AT1G34120.3 37.126 167 77 3 10 165 27 176 5.18e-22 100
Msa0793950 AT4G18010.2 50.926 216 103 1 334 549 369 581 3.21e-69 235
Msa0793950 AT4G18010.2 45.631 103 52 1 77 179 94 192 1.50e-21 99.4
Msa0793950 AT1G34120.4 51.049 143 69 1 354 496 333 474 1.88e-43 162
Msa0793950 AT1G34120.4 37.576 165 71 3 10 163 27 170 4.49e-22 100
Msa0793950 AT2G43900.2 31.489 235 133 6 345 555 649 879 1.07e-29 126
Msa0793950 AT2G43900.1 31.489 235 133 6 345 555 649 879 1.42e-29 125
Msa0793950 AT1G65580.2 28.470 281 158 6 345 586 344 620 2.22e-28 121
Msa0793950 AT1G65580.1 28.470 281 158 6 345 586 610 886 3.39e-28 121
Msa0793950 AT1G05630.3 29.787 235 137 5 345 555 643 873 7.23e-28 120
Msa0793950 AT1G05630.2 29.787 235 137 5 345 555 643 873 8.60e-28 120
Msa0793950 AT2G31830.2 28.936 235 139 5 345 555 652 882 2.99e-26 115
Msa0793950 AT2G31830.1 28.936 235 139 5 345 555 652 882 3.05e-26 115
Msa0793950 AT2G31830.3 28.936 235 139 5 345 555 652 882 3.65e-26 114
Msa0793950 AT1G47510.4 35.071 211 107 12 378 578 71 261 2.35e-20 92.0
Msa0793950 AT1G47510.1 30.952 252 144 12 337 578 92 323 7.10e-20 91.7
Msa0793950 AT1G05630.1 39.815 108 60 3 449 555 804 907 9.49e-16 81.6
Msa0793950 AT1G47510.2 40.171 117 58 5 469 578 149 260 3.30e-13 70.9

Find 197 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTACCTTTCTTGGTATT+TGG 0.086381 5_3:-5780663 None:intergenic
AAAATAAATGTTACCTTTCT+TGG 0.140474 5_3:-5780670 None:intergenic
TATTAAATTCAACACTTTAA+AGG 0.140919 5_3:+5776354 Msa0793950:five_prime_UTR
GACCGGTTTATGGCTTATTT+TGG 0.166786 5_3:+5779569 Msa0793950:CDS
TTGAATGCTGGTAATATCTT+AGG 0.183150 5_3:+5777771 Msa0793950:CDS
AAAGTTGAGTGTTTGTTAAT+AGG 0.198761 5_3:-5780921 None:intergenic
CCTGCAGATATTTATGTTCT+TGG 0.212643 5_3:+5777401 Msa0793950:CDS
TCAGACCACAGACCGGTTTA+TGG 0.223819 5_3:+5779559 Msa0793950:CDS
ATCATTTATGCTCAAATTAC+TGG 0.225558 5_3:-5777360 None:intergenic
AAGTTCCTCCACTTGGATTC+TGG 0.230810 5_3:-5779647 None:intergenic
CTTTCTGTCCTGAGGTTAAA+TGG 0.244476 5_3:-5778718 None:intergenic
CTAGTTTAAGATGGGGTTAT+AGG 0.246789 5_3:+5778108 Msa0793950:CDS
GATGGGTTATCTTGGAAATA+AGG 0.249769 5_3:+5778535 Msa0793950:CDS
AAGTTGAGTGTTTGTTAATA+GGG 0.261606 5_3:-5780920 None:intergenic
TGTTACCTTTCTTGGTATTT+GGG 0.274333 5_3:-5780662 None:intergenic
ATTAAATTCAACACTTTAAA+GGG 0.302092 5_3:+5776355 Msa0793950:five_prime_UTR
TAAAGTGTTGAATTTAATAA+TGG 0.302706 5_3:-5776350 None:intergenic
TTGGAATCTTTCTTACCGTT+TGG 0.325412 5_3:+5778450 Msa0793950:CDS
GTGTTTCAGTTTCTCTCTCT+TGG 0.329050 5_3:-5776257 None:intergenic
CCCAGCTGCTAGAAGTTGTT+TGG 0.335096 5_3:-5777986 None:intergenic
GCTCTCATGGTCAAAGAAAA+TGG 0.337468 5_3:+5776720 Msa0793950:intron
AATAATGATTGTGCAGGATA+TGG 0.339706 5_3:-5780965 None:intergenic
TGGAATCTTTCTTACCGTTT+GGG 0.342146 5_3:+5778451 Msa0793950:CDS
ATTACTGGGCGGGGATCTTC+CGG 0.344283 5_3:-5777345 None:intergenic
CGCTTATTGAGATGCAAAAC+TGG 0.345003 5_3:+5779104 Msa0793950:CDS
GTAATTTGAGCATAAATGAT+TGG 0.367181 5_3:+5777363 Msa0793950:CDS
TCAGTGTATCCGTGGGAATA+TGG 0.367650 5_3:-5779673 None:intergenic
TTATGGACATCTATAATTCT+AGG 0.373586 5_3:-5777205 None:intergenic
ATGATGATTATGATGTTTGA+TGG 0.380475 5_3:-5780843 None:intergenic
ACAAGGTTTCCACGTGTTCA+TGG 0.384598 5_3:+5778791 Msa0793950:CDS
AAGAGAGGTCGTGCATTTGC+AGG 0.385658 5_3:+5779251 Msa0793950:CDS
TCTACCACTGGCTGAGGTAT+AGG 0.390446 5_3:-5777897 None:intergenic
TTCAGTCGAATTATATGGCT+TGG 0.390737 5_3:+5779037 Msa0793950:intron
CTGCAGATATTTATGTTCTT+GGG 0.393519 5_3:+5777402 Msa0793950:CDS
GATAGAGAGCTTACTTGAAC+AGG 0.401752 5_3:-5779745 None:intergenic
AGAGGATTGATGGGTTATCT+TGG 0.407800 5_3:+5778527 Msa0793950:CDS
CAGGGCAAGGAAAGAAATAA+AGG 0.409618 5_3:-5776296 None:intergenic
TCCAGCATACCTATCTGAAT+TGG 0.410036 5_3:-5779321 None:intergenic
TGAATGCTGGTAATATCTTA+GGG 0.422048 5_3:+5777772 Msa0793950:CDS
GATCGCAGACGCTGAATCTT+CGG 0.422303 5_3:-5778049 None:intergenic
TACTGATCATGTGTTGCTGT+TGG 0.429478 5_3:-5780816 None:intergenic
TCCAAACAACTTCTAGCAGC+TGG 0.429591 5_3:+5777985 Msa0793950:CDS
TAAGATATTACCAGCATTCA+AGG 0.429808 5_3:-5777769 None:intergenic
GTAAATTCTTACTCATGCTC+AGG 0.431042 5_3:-5778845 None:intergenic
ACTGATCATGTGTTGCTGTT+GGG 0.435438 5_3:-5780815 None:intergenic
ATCTTAGGGGCAGAAGATAA+TGG 0.440365 5_3:+5777786 Msa0793950:CDS
ATGTGTTGGTAGAGGATTGA+TGG 0.443054 5_3:+5778517 Msa0793950:CDS
CCTAGCTGATCCCTCAAAAT+CGG 0.445611 5_3:-5777928 None:intergenic
ATAGGCCTAGTGACTATTCA+AGG 0.450945 5_3:+5778126 Msa0793950:CDS
ACTTTGATCCTAGTTTAAGA+TGG 0.450999 5_3:+5778099 Msa0793950:CDS
CCTTCATTATTTCCTTACTT+AGG 0.451421 5_3:+5776405 Msa0793950:five_prime_UTR
AGTCGTGGTTGCACGGTTGA+AGG 0.453437 5_3:-5778023 None:intergenic
AAGAAGAAACTCTGATGTAC+TGG 0.455706 5_3:+5778754 Msa0793950:CDS
CTTCTCCATGCCACAAAATA+CGG 0.455983 5_3:-5779495 None:intergenic
ATTTAGCAGGAACTCGAGTC+AGG 0.458225 5_3:+5777153 Msa0793950:CDS
ACGTAGCATACCTGTAGTTA+TGG 0.458292 5_3:-5777222 None:intergenic
AATACTTTAAACAGTCTTCC+CGG 0.459685 5_3:+5777840 Msa0793950:CDS
ACCAATTCAGATAGGTATGC+TGG 0.459904 5_3:+5779320 Msa0793950:CDS
TTTCTCTCTCTTGGAAACAT+AGG 0.462677 5_3:-5776248 None:intergenic
CTTTGATCCTAGTTTAAGAT+GGG 0.463958 5_3:+5778100 Msa0793950:CDS
TTATGCTCAAATTACTGGGC+GGG 0.464297 5_3:-5777355 None:intergenic
GACCGAGTGACTATTATTCA+AGG 0.467810 5_3:+5778198 Msa0793950:CDS
GACCGAGTGACTATTATTCA+AGG 0.467810 5_3:+5778237 Msa0793950:CDS
GAAGATGGATACAGCATGCC+AGG 0.470098 5_3:+5778389 Msa0793950:CDS
GCCCAAAATAAGCCATAAAC+CGG 0.473387 5_3:-5779571 None:intergenic
ACATTGTCAAAATCATCATA+TGG 0.475557 5_3:+5781218 Msa0793950:three_prime_UTR
CCTGCTGCATCGGGTGAAGA+TGG 0.478117 5_3:+5778374 Msa0793950:CDS
GTTGAGTACTTATATGTTGG+AGG 0.480485 5_3:-5779299 None:intergenic
ATTTGTAGCCATTTAACCTC+AGG 0.480590 5_3:+5778710 Msa0793950:CDS
GGTTTCTTCAATTACCAAGT+TGG 0.482493 5_3:+5776516 Msa0793950:five_prime_UTR
TTGGTTGAGTACTTATATGT+TGG 0.482564 5_3:-5779302 None:intergenic
ATCACCTTCTTTCTGTCCTG+AGG 0.483661 5_3:-5778726 None:intergenic
TAAAGACAAAGTCCTAAGTA+AGG 0.483982 5_3:-5776417 None:intergenic
TATGGAGGACCTGCTGCATC+GGG 0.488530 5_3:+5778365 Msa0793950:CDS
TTATGGAGGACCTGCTGCAT+CGG 0.488726 5_3:+5778364 Msa0793950:CDS
AAGATTCAGCGTCTGCGATC+GGG 0.489181 5_3:+5778052 Msa0793950:CDS
TCCATTACCTCCACTAGTAC+CGG 0.492802 5_3:-5777859 None:intergenic
CTGTACTCGGAGAATCTTCA+AGG 0.492802 5_3:-5778322 None:intergenic
AACTTCTAGCAGCTGGGGAA+TGG 0.493393 5_3:+5777992 Msa0793950:CDS
TCGGTCTAGTCGTGGTTGCA+CGG 0.493590 5_3:-5778030 None:intergenic
TTCTGACAGTGCGAAGTCTC+CGG 0.493689 5_3:+5778814 Msa0793950:CDS
CCTTGTTGCAAGTAAACAAA+TGG 0.494231 5_3:+5778427 Msa0793950:CDS
CCCGGTACTAGTGGAGGTAA+TGG 0.496176 5_3:+5777858 Msa0793950:CDS
TATGCTCAAATTACTGGGCG+GGG 0.497004 5_3:-5777354 None:intergenic
ATGGTAAAAGTTCCTCCACT+TGG 0.497925 5_3:-5779654 None:intergenic
CTATAACCCCATCTTAAACT+AGG 0.499596 5_3:-5778107 None:intergenic
GAAGGAAGTAAAAGAAAGTG+AGG 0.500585 5_3:-5776387 None:intergenic
AACAGTCTTCCCGGTACTAG+TGG 0.503949 5_3:+5777849 Msa0793950:CDS
TCTCTTTCATCAAACTTCAA+AGG 0.504337 5_3:-5780629 None:intergenic
CTTCGCAGAACGGTAGTTGA+GGG 0.507483 5_3:-5779080 None:intergenic
TTTCTTACCGTTTGGGTGAG+AGG 0.507778 5_3:+5778458 Msa0793950:CDS
AATTATGAACAAAGTGAAGC+TGG 0.510484 5_3:-5780892 None:intergenic
GCATTTGCAGGATGGAAAGA+AGG 0.511017 5_3:+5779263 Msa0793950:CDS
GAGATTGTTCCCTTGAATGC+TGG 0.512043 5_3:+5777759 Msa0793950:CDS
ATATGCATCCAAAGGAGAAA+AGG 0.514337 5_3:+5779348 Msa0793950:CDS
CCCCATCTTGAATAGTCACT+TGG 0.520446 5_3:-5778278 None:intergenic
AGTACTCAACCAATTCAGAT+AGG 0.522078 5_3:+5779312 Msa0793950:CDS
GAAGATTCAGCGTCTGCGAT+CGG 0.522328 5_3:+5778051 Msa0793950:CDS
CAGAGACATGCTAATTGAGA+TGG 0.523126 5_3:-5778666 None:intergenic
CAAGACATTGTGACAGGGCA+AGG 0.524347 5_3:-5776309 None:intergenic
CATTTCCCAAATACCAAGAA+AGG 0.524566 5_3:+5780657 Msa0793950:three_prime_UTR
CTGCACAATCATTATTAGCC+AGG 0.530772 5_3:+5780972 Msa0793950:three_prime_UTR
ACAGCATGCCAGGGCGCTCA+AGG 0.531941 5_3:+5778399 Msa0793950:CDS
CCAAACAACTTCTAGCAGCT+GGG 0.532075 5_3:+5777986 Msa0793950:CDS
CTGGCTAATAATGATTGTGC+AGG 0.532624 5_3:-5780971 None:intergenic
CCATCTTCACCCGATGCAGC+AGG 0.533140 5_3:-5778374 None:intergenic
ACCAAGTGACTATTCAAGAT+GGG 0.534582 5_3:+5778277 Msa0793950:CDS
TTGGGTGAGAGGTGAATTGA+AGG 0.535565 5_3:+5778469 Msa0793950:CDS
GTTGCAAGTAAACAAATGGT+TGG 0.537426 5_3:+5778431 Msa0793950:CDS
GCAGGAACTCGAGTCAGGTT+AGG 0.539731 5_3:+5777158 Msa0793950:CDS
TCATGCTCAGGGATTGTCTC+CGG 0.540169 5_3:-5778833 None:intergenic
GTAGAACAAGACATTGTGAC+AGG 0.541939 5_3:-5776315 None:intergenic
CCTAAGTAAGGAAATAATGA+AGG 0.542678 5_3:-5776405 None:intergenic
CCAAGAACATAAATATCTGC+AGG 0.544720 5_3:-5777401 None:intergenic
CAATAAGCGCCTTCGCAGAA+CGG 0.548412 5_3:-5779090 None:intergenic
CTTGCCCTTGAATAGTCACT+AGG 0.549171 5_3:-5778131 None:intergenic
TCATTTATGCTCAAATTACT+GGG 0.549743 5_3:-5777359 None:intergenic
TTATAGATGTCCATAACTAC+AGG 0.550251 5_3:+5777212 Msa0793950:CDS
CCATTTGTTTACTTGCAACA+AGG 0.550429 5_3:-5778427 None:intergenic
GACCAAGTGACTATTCAAGA+TGG 0.550949 5_3:+5778276 Msa0793950:CDS
AATGTACAGAGAAATTTAGC+AGG 0.552127 5_3:+5777140 Msa0793950:intron
TGTACTTAATGAAGCTCTCA+TGG 0.553658 5_3:+5776707 Msa0793950:intron
AAAGTATCATGTGTTGGTAG+AGG 0.555572 5_3:+5778509 Msa0793950:CDS
AGGGCAAGGAAAGAAATAAA+GGG 0.557287 5_3:-5776295 None:intergenic
TGAGGACGCTACTCAACAAA+GGG 0.557372 5_3:+5776774 Msa0793950:CDS
CAATTCACCTCTCACCCAAA+CGG 0.559109 5_3:-5778465 None:intergenic
TTGAGTACTTATATGTTGGA+GGG 0.559129 5_3:-5779298 None:intergenic
AGAATTCATCATTCTTCCAT+CGG 0.559350 5_3:+5777955 Msa0793950:CDS
CCTTCGCAGAACGGTAGTTG+AGG 0.561020 5_3:-5779081 None:intergenic
AACATGAAAGTATCATGTGT+TGG 0.564736 5_3:+5778503 Msa0793950:CDS
GCTGCTAGAAGTTGTTTGGA+AGG 0.564774 5_3:-5777982 None:intergenic
GAGTGATGATCTTACCAAGC+AGG 0.565102 5_3:-5779377 None:intergenic
AGAAAAGGCGAACACCTGCT+TGG 0.567924 5_3:+5779363 Msa0793950:CDS
TCGGCATTCAATTCTACCAC+TGG 0.569184 5_3:-5777909 None:intergenic
TTGTTTGGAAGGATCGCCGA+TGG 0.573538 5_3:-5777971 None:intergenic
AATTTAGCTCAGTGTATCCG+TGG 0.574646 5_3:-5779681 None:intergenic
TCCATGGTTTGACTCAACCT+CGG 0.575355 5_3:-5779593 None:intergenic
GTGGCTTGGAATACAGAAGC+AGG 0.576308 5_3:+5776979 Msa0793950:CDS
TTCAATTCTACCACTGGCTG+AGG 0.577913 5_3:-5777903 None:intergenic
TGCTGTTGTAGCAGAGAACA+AGG 0.578610 5_3:+5776224 Msa0793950:five_prime_UTR
TGTGTTGGTAGAGGATTGAT+GGG 0.580183 5_3:+5778518 Msa0793950:CDS
GGTGAAAACAAGACTGTACT+CGG 0.580831 5_3:-5778335 None:intergenic
AGGCTGTACCTTGAGCGCCC+TGG 0.581464 5_3:-5778407 None:intergenic
CTGAGGACGCTACTCAACAA+AGG 0.588845 5_3:+5776773 Msa0793950:CDS
TTAACCTCAGGACAGAAAGA+AGG 0.589550 5_3:+5778722 Msa0793950:CDS
GAGGTCGTGCATTTGCAGGA+TGG 0.593442 5_3:+5779255 Msa0793950:CDS
GACCGAGTGACTATTATACA+AGG 0.594922 5_3:+5778162 Msa0793950:CDS
CATTTGCAGGATGGAAAGAA+GGG 0.602587 5_3:+5779264 Msa0793950:CDS
GCCCTTGAATAATAGTCACT+CGG 0.602807 5_3:-5778239 None:intergenic
CTGAATCTTCGGTCTAGTCG+TGG 0.604034 5_3:-5778038 None:intergenic
TTTCCTCAGAGTTACCAACT+TGG 0.605370 5_3:-5776530 None:intergenic
TAAATTCTTACTCATGCTCA+GGG 0.606090 5_3:-5778844 None:intergenic
GGACATCTATAATTCTAGGA+TGG 0.608490 5_3:-5777201 None:intergenic
CCATTACCTCCACTAGTACC+GGG 0.610322 5_3:-5777858 None:intergenic
CCTCAACTACCGTTCTGCGA+AGG 0.610354 5_3:+5779081 Msa0793950:CDS
GCCCTTGAATAATAGTCACT+CGG 0.611858 5_3:-5778200 None:intergenic
ATAAATATCTGCAGGCGGTG+AGG 0.612794 5_3:-5777393 None:intergenic
CGAGTCAGGTTAGGCGAGCG+AGG 0.613788 5_3:+5777167 Msa0793950:CDS
TGATTGTGCAGGATATGGTA+TGG 0.614521 5_3:-5780960 None:intergenic
GTTGGTACATGGAATGTGGC+CGG 0.616493 5_3:+5777326 Msa0793950:CDS
CTATAATTCTAGGATGGTCA+AGG 0.617072 5_3:-5777195 None:intergenic
TTTGATCCTAGTTTAAGATG+GGG 0.618992 5_3:+5778101 Msa0793950:CDS
ACTGGCTGAGGTATAGGAGA+AGG 0.619090 5_3:-5777891 None:intergenic
AAGGAAGTAAAAGAAAGTGA+GGG 0.623001 5_3:-5776386 None:intergenic
TGGAGATGATATGCATCCAA+AGG 0.623938 5_3:+5779340 Msa0793950:CDS
ACCGAGTGACTATTATTCAA+GGG 0.629387 5_3:+5778199 Msa0793950:CDS
ACCGAGTGACTATTATTCAA+GGG 0.629387 5_3:+5778238 Msa0793950:CDS
CAAACAACTTCTAGCAGCTG+GGG 0.630987 5_3:+5777987 Msa0793950:CDS
AAGATATTACCAGCATTCAA+GGG 0.633888 5_3:-5777768 None:intergenic
GGCCTTGTATAATAGTCACT+CGG 0.636022 5_3:-5778164 None:intergenic
ATTTAGCTCAGTGTATCCGT+GGG 0.637611 5_3:-5779680 None:intergenic
GACGCTACTCAACAAAGGGA+TGG 0.637949 5_3:+5776778 Msa0793950:CDS
GAATGCTGGTAATATCTTAG+GGG 0.639487 5_3:+5777773 Msa0793950:CDS
ATAAGCCATAAACCGGTCTG+TGG 0.641383 5_3:-5779564 None:intergenic
TTGTCAAAATCATCATATGG+AGG 0.642044 5_3:+5781221 Msa0793950:three_prime_UTR
ATAGAGAGCTTACTTGAACA+GGG 0.644271 5_3:-5779744 None:intergenic
TTCTCCTATACCTCAGCCAG+TGG 0.645089 5_3:+5777893 Msa0793950:CDS
TGAGAATACCAAGAAAAGCA+AGG 0.646032 5_3:+5776604 Msa0793950:CDS
TTCTCGTTCCAGAATCCAAG+TGG 0.646700 5_3:+5779639 Msa0793950:CDS
CTGTCAGAACCATGAACACG+TGG 0.651771 5_3:-5778800 None:intergenic
GCCGAGGTTGAGTCAAACCA+TGG 0.652096 5_3:+5779592 Msa0793950:CDS
TAGGCCTAGTGACTATTCAA+GGG 0.652233 5_3:+5778127 Msa0793950:CDS
CCAAGTGACTATTCAAGATG+GGG 0.653125 5_3:+5778278 Msa0793950:CDS
AGTCTTCCCGGTACTAGTGG+AGG 0.661740 5_3:+5777852 Msa0793950:CDS
TTTATGCTCAAATTACTGGG+CGG 0.668447 5_3:-5777356 None:intergenic
AAGATGGATACAGCATGCCA+GGG 0.670382 5_3:+5778390 Msa0793950:CDS
TCGTTCCAGAATCCAAGTGG+AGG 0.670823 5_3:+5779642 Msa0793950:CDS
TTGAGAATAGAGCAAAAGAG+AGG 0.672190 5_3:+5779236 Msa0793950:CDS
TTACCAAGTTGGTAACTCTG+AGG 0.681107 5_3:+5776527 Msa0793950:five_prime_UTR
CGTCAAATATCTTATGTACG+CGG 0.681567 5_3:+5779523 Msa0793950:CDS
CAACATCAAATGCAAAACTG+AGG 0.684800 5_3:+5776756 Msa0793950:CDS
GCAGGTCCTCCATAAGACAT+CGG 0.688092 5_3:-5778356 None:intergenic
AGCATTGTTAGAGAATGACC+AGG 0.689841 5_3:+5779129 Msa0793950:CDS
AGAACATAAATATCTGCAGG+CGG 0.709644 5_3:-5777398 None:intergenic
GCAAGGAAAGAAATAAAGGG+AGG 0.723683 5_3:-5776292 None:intergenic
GGTTCATCTGATGATGACAA+TGG 0.730250 5_3:+5778299 Msa0793950:CDS
TAGAACAAGACATTGTGACA+GGG 0.733705 5_3:-5776314 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAACAAATTCAAAATT+AGG - chr5_3:5779019-5779038 None:intergenic 10.0%
!!! TTTTTTTTTTAATGTAATCA+AGG - chr5_3:5780056-5780075 None:intergenic 10.0%
!!! TAAAGTGTTGAATTTAATAA+TGG - chr5_3:5776353-5776372 None:intergenic 15.0%
!! TATTAAATTCAACACTTTAA+AGG + chr5_3:5776354-5776373 Msa0793950:five_prime_UTR 15.0%
!! ATTAAATTCAACACTTTAAA+GGG + chr5_3:5776355-5776374 Msa0793950:five_prime_UTR 15.0%
!!! TTTTTTATGAACAAAATCAA+AGG + chr5_3:5776853-5776872 Msa0793950:intron 15.0%
!!! ATCATTTTCAAATGAAAATA+AGG - chr5_3:5777082-5777101 None:intergenic 15.0%
!! TATATATTAAGAAATGCAAT+GGG - chr5_3:5778932-5778951 None:intergenic 15.0%
!! ATATATATTAAGAAATGCAA+TGG - chr5_3:5778933-5778952 None:intergenic 15.0%
!!! CATTTTTTATTTTCATACAA+TGG + chr5_3:5780126-5780145 Msa0793950:intron 15.0%
!! TTTCATAATATTAATTCACA+CGG + chr5_3:5780424-5780443 Msa0793950:intron 15.0%
!!! CATGATTCTTTAATTATTTT+TGG + chr5_3:5781164-5781183 Msa0793950:three_prime_UTR 15.0%
!! AATTATCTATTGTATTTGCA+GGG + chr5_3:5778641-5778660 Msa0793950:intron 20.0%
!! ATATATTAAGAAATGCAATG+GGG - chr5_3:5778931-5778950 None:intergenic 20.0%
!! AAACAAATTCAAAATTAGGA+CGG - chr5_3:5779015-5779034 None:intergenic 20.0%
!!! TTTTATTCAGTCGAATTATA+TGG + chr5_3:5779032-5779051 Msa0793950:intron 20.0%
!! TTATGGCAATGTAAATATAT+AGG + chr5_3:5779467-5779486 Msa0793950:intron 20.0%
!! AAAATGAAAACCAAACATAA+AGG + chr5_3:5780013-5780032 Msa0793950:intron 20.0%
!! CCAACAATATAATAAGAAAA+AGG - chr5_3:5780222-5780241 None:intergenic 20.0%
!!! CCTTTTTCTTATTATATTGT+TGG + chr5_3:5780219-5780238 Msa0793950:intron 20.0%
!! ATAAGCTGTAATTAACTTAT+AGG + chr5_3:5780264-5780283 Msa0793950:intron 20.0%
!! GTATTCTAATTCAGATAAAA+GGG - chr5_3:5780567-5780586 None:intergenic 20.0%
!! AGTATTCTAATTCAGATAAA+AGG - chr5_3:5780568-5780587 None:intergenic 20.0%
!! AAAATAAATGTTACCTTTCT+TGG - chr5_3:5780673-5780692 None:intergenic 20.0%
!!! TTATTTTATTGTTATTGTGC+AGG + chr5_3:5781104-5781123 Msa0793950:intron 20.0%
!!! TTTGACTGTTTTTATGTGTT+TGG + chr5_3:5776684-5776703 Msa0793950:intron 25.0%
!! TGAAAATAAGGCATTTCAAT+TGG - chr5_3:5777070-5777089 None:intergenic 25.0%
! TTATGGACATCTATAATTCT+AGG - chr5_3:5777208-5777227 None:intergenic 25.0%
! TCATTTATGCTCAAATTACT+GGG - chr5_3:5777362-5777381 None:intergenic 25.0%
! ATCATTTATGCTCAAATTAC+TGG - chr5_3:5777363-5777382 None:intergenic 25.0%
! GTAATTTGAGCATAAATGAT+TGG + chr5_3:5777363-5777382 Msa0793950:CDS 25.0%
! TCAAATAAGTCAATCTAATC+AGG - chr5_3:5777472-5777491 None:intergenic 25.0%
!!! TTTACCTTTTGCTATAGAAA+TGG + chr5_3:5777625-5777644 Msa0793950:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr5_3:5777681-5777700 Msa0793950:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr5_3:5777682-5777701 Msa0793950:intron 25.0%
! CTGCAAATACAATAGATAAT+TGG - chr5_3:5778642-5778661 None:intergenic 25.0%
! CAATTATCTATTGTATTTGC+AGG + chr5_3:5778640-5778659 Msa0793950:intron 25.0%
! TATATTAAGAAATGCAATGG+GGG - chr5_3:5778930-5778949 None:intergenic 25.0%
! GTGTATATTCACATTATTAC+TGG + chr5_3:5779210-5779229 Msa0793950:intron 25.0%
! CTTAACCATACATAAGTATT+AGG + chr5_3:5779401-5779420 Msa0793950:intron 25.0%
! AAGTTCCTAATACTTATGTA+TGG - chr5_3:5779409-5779428 None:intergenic 25.0%
! TTAGGAACTTAGCAATAAAA+AGG + chr5_3:5779419-5779438 Msa0793950:intron 25.0%
!! TACTTTTCTTCAATTTTCCA+TGG - chr5_3:5779612-5779631 None:intergenic 25.0%
! TAGTTACGTACTTACATTAA+AGG + chr5_3:5779836-5779855 Msa0793950:intron 25.0%
! TTAGATTAATCGAGCATTAA+AGG - chr5_3:5779893-5779912 None:intergenic 25.0%
! AAAAAAAAAAATGATGCAGC+TGG + chr5_3:5780067-5780086 Msa0793950:intron 25.0%
! TAGTAAAATATAGTGCACTA+AGG - chr5_3:5780161-5780180 None:intergenic 25.0%
! TAACAAATTAGTACTGTCAT+TGG + chr5_3:5780360-5780379 Msa0793950:intron 25.0%
! TACTAACAGTACTCAATTAA+AGG - chr5_3:5780457-5780476 None:intergenic 25.0%
! TAGTAGACAATATAGATAAG+AGG - chr5_3:5780737-5780756 None:intergenic 25.0%
! ATGATGATTATGATGTTTGA+TGG - chr5_3:5780846-5780865 None:intergenic 25.0%
!! AAGTTGAGTGTTTGTTAATA+GGG - chr5_3:5780923-5780942 None:intergenic 25.0%
!! AAAGTTGAGTGTTTGTTAAT+AGG - chr5_3:5780924-5780943 None:intergenic 25.0%
!!! AGAAGTATTTTTATAGTACC+TGG - chr5_3:5780993-5781012 None:intergenic 25.0%
! CTTATATCACTAGTAACTTA+TGG - chr5_3:5781057-5781076 None:intergenic 25.0%
! ACATTGTCAAAATCATCATA+TGG + chr5_3:5781218-5781237 Msa0793950:three_prime_UTR 25.0%
AAGGAAGTAAAAGAAAGTGA+GGG - chr5_3:5776389-5776408 None:intergenic 30.0%
CCTAAGTAAGGAAATAATGA+AGG - chr5_3:5776408-5776427 None:intergenic 30.0%
CCTTCATTATTTCCTTACTT+AGG + chr5_3:5776405-5776424 Msa0793950:five_prime_UTR 30.0%
TAAAGACAAAGTCCTAAGTA+AGG - chr5_3:5776420-5776439 None:intergenic 30.0%
AGAAGAGAAAAACAAGAAGA+AGG - chr5_3:5776467-5776486 None:intergenic 30.0%
!! AAAGCAAAAAGTGTTGAGTT+TGG + chr5_3:5776495-5776514 Msa0793950:five_prime_UTR 30.0%
!! GTAAAAAACCTTGCTTTTCT+TGG - chr5_3:5776615-5776634 None:intergenic 30.0%
! TGAAACATGTTTCCTTTTTC+AGG + chr5_3:5776954-5776973 Msa0793950:intron 30.0%
ACAATCAAAAAGAGCAAAAC+AGG + chr5_3:5777029-5777048 Msa0793950:CDS 30.0%
TCTCTGTACATTACAATTGA+GGG - chr5_3:5777132-5777151 None:intergenic 30.0%
TTCTCTGTACATTACAATTG+AGG - chr5_3:5777133-5777152 None:intergenic 30.0%
AATGTACAGAGAAATTTAGC+AGG + chr5_3:5777140-5777159 Msa0793950:intron 30.0%
TTATAGATGTCCATAACTAC+AGG + chr5_3:5777212-5777231 Msa0793950:CDS 30.0%
CTGCAGATATTTATGTTCTT+GGG + chr5_3:5777402-5777421 Msa0793950:CDS 30.0%
AGATATTTATGTTCTTGGGT+AGG + chr5_3:5777406-5777425 Msa0793950:intron 30.0%
TAAGCCATTTCTATAGCAAA+AGG - chr5_3:5777632-5777651 None:intergenic 30.0%
AAGATATTACCAGCATTCAA+GGG - chr5_3:5777771-5777790 None:intergenic 30.0%
TAAGATATTACCAGCATTCA+AGG - chr5_3:5777772-5777791 None:intergenic 30.0%
TTGAATGCTGGTAATATCTT+AGG + chr5_3:5777771-5777790 Msa0793950:CDS 30.0%
TGAATGCTGGTAATATCTTA+GGG + chr5_3:5777772-5777791 Msa0793950:CDS 30.0%
AATACTTTAAACAGTCTTCC+CGG + chr5_3:5777840-5777859 Msa0793950:CDS 30.0%
AGAATTCATCATTCTTCCAT+CGG + chr5_3:5777955-5777974 Msa0793950:CDS 30.0%
ACTTTGATCCTAGTTTAAGA+TGG + chr5_3:5778099-5778118 Msa0793950:CDS 30.0%
! CTTTGATCCTAGTTTAAGAT+GGG + chr5_3:5778100-5778119 Msa0793950:CDS 30.0%
! TTTGATCCTAGTTTAAGATG+GGG + chr5_3:5778101-5778120 Msa0793950:CDS 30.0%
!! AACATGAAAGTATCATGTGT+TGG + chr5_3:5778503-5778522 Msa0793950:CDS 30.0%
AGGGAAAGTTAAACAAGAAA+AGG - chr5_3:5778594-5778613 None:intergenic 30.0%
TGGAGATTCTTAAAAAGACA+AGG + chr5_3:5778774-5778793 Msa0793950:CDS 30.0%
TAAATTCTTACTCATGCTCA+GGG - chr5_3:5778847-5778866 None:intergenic 30.0%
CTATGTAAGAAATCTAGACA+AGG - chr5_3:5778964-5778983 None:intergenic 30.0%
TCTAGATTTCTTACATAGAG+TGG + chr5_3:5778966-5778985 Msa0793950:intron 30.0%
GGTTATAGAATAGGTCTAAA+AGG - chr5_3:5779159-5779178 None:intergenic 30.0%
TGTTTGTGTGGTTATAGAAT+AGG - chr5_3:5779168-5779187 None:intergenic 30.0%
ACATAAGTACTCATTCGTAT+TGG - chr5_3:5779192-5779211 None:intergenic 30.0%
TTGAGTACTTATATGTTGGA+GGG - chr5_3:5779301-5779320 None:intergenic 30.0%
TTGGTTGAGTACTTATATGT+TGG - chr5_3:5779305-5779324 None:intergenic 30.0%
TGCTGACATTTCATAACTTA+TGG + chr5_3:5779450-5779469 Msa0793950:intron 30.0%
!!! CTGAGCTAAATTTTTTCTGA+AGG + chr5_3:5779692-5779711 Msa0793950:CDS 30.0%
!!! GCTAAATTTTTTCTGAAGGA+AGG + chr5_3:5779696-5779715 Msa0793950:exon 30.0%
!!! AAATTTTTTCTGAAGGAAGG+AGG + chr5_3:5779699-5779718 Msa0793950:exon 30.0%
GTCACAATTTCAAAATTGCA+GGG + chr5_3:5779781-5779800 Msa0793950:intron 30.0%
TAAAGGACTTCAATTCTCTA+CGG + chr5_3:5779853-5779872 Msa0793950:intron 30.0%
GCTTATTAACCTTGTACTTT+CGG - chr5_3:5780250-5780269 None:intergenic 30.0%
!! AACTATTTCTATTCAGCAAG+CGG + chr5_3:5780601-5780620 Msa0793950:intron 30.0%
TCTCTTTCATCAAACTTCAA+AGG - chr5_3:5780632-5780651 None:intergenic 30.0%
TGTTACCTTTCTTGGTATTT+GGG - chr5_3:5780665-5780684 None:intergenic 30.0%
ATGTTACCTTTCTTGGTATT+TGG - chr5_3:5780666-5780685 None:intergenic 30.0%
AATTATGAACAAAGTGAAGC+TGG - chr5_3:5780895-5780914 None:intergenic 30.0%
AATAATGATTGTGCAGGATA+TGG - chr5_3:5780968-5780987 None:intergenic 30.0%
TTGTCAAAATCATCATATGG+AGG + chr5_3:5781221-5781240 Msa0793950:three_prime_UTR 30.0%
TTTCTCTCTCTTGGAAACAT+AGG - chr5_3:5776251-5776270 None:intergenic 35.0%
AGGGCAAGGAAAGAAATAAA+GGG - chr5_3:5776298-5776317 None:intergenic 35.0%
TAGAACAAGACATTGTGACA+GGG - chr5_3:5776317-5776336 None:intergenic 35.0%
GAAGGAAGTAAAAGAAAGTG+AGG - chr5_3:5776390-5776409 None:intergenic 35.0%
AGAGAAAAACAAGAAGAAGG+TGG - chr5_3:5776464-5776483 None:intergenic 35.0%
GGTTTCTTCAATTACCAAGT+TGG + chr5_3:5776516-5776535 Msa0793950:five_prime_UTR 35.0%
!! GAGGAAAAAAAGCATTCTTG+AGG + chr5_3:5776546-5776565 Msa0793950:five_prime_UTR 35.0%
!! GAAAAAAAGCATTCTTGAGG+AGG + chr5_3:5776549-5776568 Msa0793950:five_prime_UTR 35.0%
TGAGAATACCAAGAAAAGCA+AGG + chr5_3:5776604-5776623 Msa0793950:CDS 35.0%
TGTACTTAATGAAGCTCTCA+TGG + chr5_3:5776707-5776726 Msa0793950:intron 35.0%
CAACATCAAATGCAAAACTG+AGG + chr5_3:5776756-5776775 Msa0793950:CDS 35.0%
ACCAAGATGCAAATGCAAAA+GGG + chr5_3:5776877-5776896 Msa0793950:intron 35.0%
!!! AACATGTTTCCTTTTTCAGG+AGG + chr5_3:5776957-5776976 Msa0793950:intron 35.0%
!! TTGCTCTTTTTGATTGTGCT+TGG - chr5_3:5777026-5777045 None:intergenic 35.0%
!! CTATAATTCTAGGATGGTCA+AGG - chr5_3:5777198-5777217 None:intergenic 35.0%
! GGACATCTATAATTCTAGGA+TGG - chr5_3:5777204-5777223 None:intergenic 35.0%
! TTTGTGAGCAGCATTTTTGT+TGG + chr5_3:5777308-5777327 Msa0793950:intron 35.0%
! TTTTGTTGGTACATGGAATG+TGG + chr5_3:5777322-5777341 Msa0793950:CDS 35.0%
TTTATGCTCAAATTACTGGG+CGG - chr5_3:5777359-5777378 None:intergenic 35.0%
AGAACATAAATATCTGCAGG+CGG - chr5_3:5777401-5777420 None:intergenic 35.0%
CCAAGAACATAAATATCTGC+AGG - chr5_3:5777404-5777423 None:intergenic 35.0%
CCTGCAGATATTTATGTTCT+TGG + chr5_3:5777401-5777420 Msa0793950:CDS 35.0%
TTCCATAAGCTCTTCATGAT+AGG + chr5_3:5777564-5777583 Msa0793950:intron 35.0%
AACCTATCATGAAGAGCTTA+TGG - chr5_3:5777569-5777588 None:intergenic 35.0%
GAATGCTGGTAATATCTTAG+GGG + chr5_3:5777773-5777792 Msa0793950:CDS 35.0%
!!! AATGAGAGCTAGCCATTTTT+TGG - chr5_3:5777817-5777836 None:intergenic 35.0%
! AAAAAATGGCTAGCTCTCAT+TGG + chr5_3:5777816-5777835 Msa0793950:CDS 35.0%
!!! AGAATTGAATGCCGATTTTG+AGG + chr5_3:5777917-5777936 Msa0793950:CDS 35.0%
!!! GAATTGAATGCCGATTTTGA+GGG + chr5_3:5777918-5777937 Msa0793950:CDS 35.0%
CTATAACCCCATCTTAAACT+AGG - chr5_3:5778110-5778129 None:intergenic 35.0%
! CTAGTTTAAGATGGGGTTAT+AGG + chr5_3:5778108-5778127 Msa0793950:CDS 35.0%
ACCGAGTGACTATTATTCAA+GGG + chr5_3:5778199-5778218 Msa0793950:CDS 35.0%
ACCGAGTGACTATTATTCAA+GGG + chr5_3:5778199-5778218 Msa0793950:CDS 35.0%
ACCAAGTGACTATTCAAGAT+GGG + chr5_3:5778277-5778296 Msa0793950:CDS 35.0%
! TTGTTTTCACCGATGTCTTA+TGG + chr5_3:5778347-5778366 Msa0793950:CDS 35.0%
CCATTTGTTTACTTGCAACA+AGG - chr5_3:5778430-5778449 None:intergenic 35.0%
CCTTGTTGCAAGTAAACAAA+TGG + chr5_3:5778427-5778446 Msa0793950:CDS 35.0%
GTTGCAAGTAAACAAATGGT+TGG + chr5_3:5778431-5778450 Msa0793950:CDS 35.0%
TTGGAATCTTTCTTACCGTT+TGG + chr5_3:5778450-5778469 Msa0793950:CDS 35.0%
TGGAATCTTTCTTACCGTTT+GGG + chr5_3:5778451-5778470 Msa0793950:CDS 35.0%
! AAAGTATCATGTGTTGGTAG+AGG + chr5_3:5778509-5778528 Msa0793950:CDS 35.0%
!! GATGGGTTATCTTGGAAATA+AGG + chr5_3:5778535-5778554 Msa0793950:CDS 35.0%
TGTCACGAACATTCTTCAAA+GGG - chr5_3:5778613-5778632 None:intergenic 35.0%
TTGTCACGAACATTCTTCAA+AGG - chr5_3:5778614-5778633 None:intergenic 35.0%
ATTTGTAGCCATTTAACCTC+AGG + chr5_3:5778710-5778729 Msa0793950:CDS 35.0%
AAGAAGAAACTCTGATGTAC+TGG + chr5_3:5778754-5778773 Msa0793950:CDS 35.0%
GTAAATTCTTACTCATGCTC+AGG - chr5_3:5778848-5778867 None:intergenic 35.0%
CATGAGTAAGAATTTACCAG+CGG + chr5_3:5778851-5778870 Msa0793950:intron 35.0%
TTCAGTCGAATTATATGGCT+TGG + chr5_3:5779037-5779056 Msa0793950:intron 35.0%
! ATAGGTCTAAAAGGTATACC+TGG - chr5_3:5779150-5779169 None:intergenic 35.0%
!! ATTCGTATTGGTTGTTTGTG+TGG - chr5_3:5779180-5779199 None:intergenic 35.0%
TTGAGAATAGAGCAAAAGAG+AGG + chr5_3:5779236-5779255 Msa0793950:CDS 35.0%
GTTGAGTACTTATATGTTGG+AGG - chr5_3:5779302-5779321 None:intergenic 35.0%
AGTACTCAACCAATTCAGAT+AGG + chr5_3:5779312-5779331 Msa0793950:CDS 35.0%
ATATGCATCCAAAGGAGAAA+AGG + chr5_3:5779348-5779367 Msa0793950:CDS 35.0%
GGAACTTAGCAATAAAAAGG+AGG + chr5_3:5779422-5779441 Msa0793950:intron 35.0%
CGTCAAATATCTTATGTACG+CGG + chr5_3:5779523-5779542 Msa0793950:CDS 35.0%
!! ACCGGTTTATGGCTTATTTT+GGG + chr5_3:5779570-5779589 Msa0793950:CDS 35.0%
! GAACTTTTACCATATTCCCA+CGG + chr5_3:5779664-5779683 Msa0793950:CDS 35.0%
ATAGAGAGCTTACTTGAACA+GGG - chr5_3:5779747-5779766 None:intergenic 35.0%
GGTCACAATTTCAAAATTGC+AGG + chr5_3:5779780-5779799 Msa0793950:intron 35.0%
!! TTCAAAATTGCAGGGCATTT+TGG + chr5_3:5779789-5779808 Msa0793950:intron 35.0%
TTAATCGAGCATTAAAGGTG+CGG - chr5_3:5779888-5779907 None:intergenic 35.0%
TTAATCCTACCGAACTTACA+AGG + chr5_3:5779942-5779961 Msa0793950:intron 35.0%
TTTGCTCAGACCTTTATGTT+TGG - chr5_3:5780026-5780045 None:intergenic 35.0%
ATGATTAGCATTCTGACATC+AGG + chr5_3:5780394-5780413 Msa0793950:intron 35.0%
CATTTCCCAAATACCAAGAA+AGG + chr5_3:5780657-5780676 Msa0793950:three_prime_UTR 35.0%
!!! CTTACTTGCTTCTGCTTTTT+TGG + chr5_3:5780705-5780724 Msa0793950:intron 35.0%
CCTGAGATGAAAAAGAGAAA+AGG - chr5_3:5780772-5780791 None:intergenic 35.0%
!! CCTTTTCTCTTTTTCATCTC+AGG + chr5_3:5780769-5780788 Msa0793950:intron 35.0%
! TTATTGTTATTGTGCAGGAG+TGG + chr5_3:5781109-5781128 Msa0793950:intron 35.0%
GTGTTTCAGTTTCTCTCTCT+TGG - chr5_3:5776260-5776279 None:intergenic 40.0%
GCAAGGAAAGAAATAAAGGG+AGG - chr5_3:5776295-5776314 None:intergenic 40.0%
CAGGGCAAGGAAAGAAATAA+AGG - chr5_3:5776299-5776318 None:intergenic 40.0%
GTAGAACAAGACATTGTGAC+AGG - chr5_3:5776318-5776337 None:intergenic 40.0%
!! TTACCAAGTTGGTAACTCTG+AGG + chr5_3:5776527-5776546 Msa0793950:five_prime_UTR 40.0%
TTTCCTCAGAGTTACCAACT+TGG - chr5_3:5776533-5776552 None:intergenic 40.0%
GCTCTCATGGTCAAAGAAAA+TGG + chr5_3:5776720-5776739 Msa0793950:intron 40.0%
CACCAAGATGCAAATGCAAA+AGG + chr5_3:5776876-5776895 Msa0793950:intron 40.0%
! ACCCTTTTGCATTTGCATCT+TGG - chr5_3:5776881-5776900 None:intergenic 40.0%
!!! ATGTTTCCTTTTTCAGGAGG+TGG + chr5_3:5776960-5776979 Msa0793950:intron 40.0%
ACGTAGCATACCTGTAGTTA+TGG - chr5_3:5777225-5777244 None:intergenic 40.0%
! GCAGCATTTTTGTTGGTACA+TGG + chr5_3:5777315-5777334 Msa0793950:intron 40.0%
TTATGCTCAAATTACTGGGC+GGG - chr5_3:5777358-5777377 None:intergenic 40.0%
ATCTTAGGGGCAGAAGATAA+TGG + chr5_3:5777786-5777805 Msa0793950:CDS 40.0%
ATAATGGCCCTGCCAAAAAA+TGG + chr5_3:5777802-5777821 Msa0793950:CDS 40.0%
! ATCGGGTAATTTTCGGTAAC+AGG + chr5_3:5778069-5778088 Msa0793950:CDS 40.0%
ATAGGCCTAGTGACTATTCA+AGG + chr5_3:5778126-5778145 Msa0793950:CDS 40.0%
TAGGCCTAGTGACTATTCAA+GGG + chr5_3:5778127-5778146 Msa0793950:CDS 40.0%
GACCGAGTGACTATTATACA+AGG + chr5_3:5778162-5778181 Msa0793950:CDS 40.0%
! GGCCTTGTATAATAGTCACT+CGG - chr5_3:5778167-5778186 None:intergenic 40.0%
GACCGAGTGACTATTATTCA+AGG + chr5_3:5778198-5778217 Msa0793950:CDS 40.0%
GCCCTTGAATAATAGTCACT+CGG - chr5_3:5778203-5778222 None:intergenic 40.0%
GACCGAGTGACTATTATTCA+AGG + chr5_3:5778198-5778217 Msa0793950:CDS 40.0%
GCCCTTGAATAATAGTCACT+CGG - chr5_3:5778203-5778222 None:intergenic 40.0%
GACCAAGTGACTATTCAAGA+TGG + chr5_3:5778276-5778295 Msa0793950:CDS 40.0%
CCAAGTGACTATTCAAGATG+GGG + chr5_3:5778278-5778297 Msa0793950:CDS 40.0%
! GGTTCATCTGATGATGACAA+TGG + chr5_3:5778299-5778318 Msa0793950:CDS 40.0%
GGTGAAAACAAGACTGTACT+CGG - chr5_3:5778338-5778357 None:intergenic 40.0%
! TTTTCACCGATGTCTTATGG+AGG + chr5_3:5778350-5778369 Msa0793950:CDS 40.0%
! ATGTGTTGGTAGAGGATTGA+TGG + chr5_3:5778517-5778536 Msa0793950:CDS 40.0%
! TGTGTTGGTAGAGGATTGAT+GGG + chr5_3:5778518-5778537 Msa0793950:CDS 40.0%
!! AGAGGATTGATGGGTTATCT+TGG + chr5_3:5778527-5778546 Msa0793950:CDS 40.0%
CAGAGACATGCTAATTGAGA+TGG - chr5_3:5778669-5778688 None:intergenic 40.0%
CTTTCTGTCCTGAGGTTAAA+TGG - chr5_3:5778721-5778740 None:intergenic 40.0%
TTAACCTCAGGACAGAAAGA+AGG + chr5_3:5778722-5778741 Msa0793950:CDS 40.0%
!! GACATTTTAATGTATGCCGC+TGG - chr5_3:5778870-5778889 None:intergenic 40.0%
CGCTTATTGAGATGCAAAAC+TGG + chr5_3:5779104-5779123 Msa0793950:CDS 40.0%
AGCATTGTTAGAGAATGACC+AGG + chr5_3:5779129-5779148 Msa0793950:CDS 40.0%
CATTTGCAGGATGGAAAGAA+GGG + chr5_3:5779264-5779283 Msa0793950:CDS 40.0%
ACCAATTCAGATAGGTATGC+TGG + chr5_3:5779320-5779339 Msa0793950:CDS 40.0%
TCCAGCATACCTATCTGAAT+TGG - chr5_3:5779324-5779343 None:intergenic 40.0%
TGGAGATGATATGCATCCAA+AGG + chr5_3:5779340-5779359 Msa0793950:CDS 40.0%
! ATAGGTGTGACCGTATTTTG+TGG + chr5_3:5779485-5779504 Msa0793950:intron 40.0%
CTTCTCCATGCCACAAAATA+CGG - chr5_3:5779498-5779517 None:intergenic 40.0%
! AAGATTTTCAGACCACAGAC+CGG + chr5_3:5779552-5779571 Msa0793950:CDS 40.0%
!! GACCGGTTTATGGCTTATTT+TGG + chr5_3:5779569-5779588 Msa0793950:CDS 40.0%
GCCCAAAATAAGCCATAAAC+CGG - chr5_3:5779574-5779593 None:intergenic 40.0%
ATGGTAAAAGTTCCTCCACT+TGG - chr5_3:5779657-5779676 None:intergenic 40.0%
! ATTTAGCTCAGTGTATCCGT+GGG - chr5_3:5779683-5779702 None:intergenic 40.0%
! AATTTAGCTCAGTGTATCCG+TGG - chr5_3:5779684-5779703 None:intergenic 40.0%
GATAGAGAGCTTACTTGAAC+AGG - chr5_3:5779748-5779767 None:intergenic 40.0%
TAAGCTCTCTATCCTATTCG+CGG + chr5_3:5779755-5779774 Msa0793950:intron 40.0%
TTAACCTTGTACTTTCGGTC+TGG - chr5_3:5780245-5780264 None:intergenic 40.0%
! ACTGATCATGTGTTGCTGTT+GGG - chr5_3:5780818-5780837 None:intergenic 40.0%
! TACTGATCATGTGTTGCTGT+TGG - chr5_3:5780819-5780838 None:intergenic 40.0%
TGATTGTGCAGGATATGGTA+TGG - chr5_3:5780963-5780982 None:intergenic 40.0%
CTGGCTAATAATGATTGTGC+AGG - chr5_3:5780974-5780993 None:intergenic 40.0%
CTGCACAATCATTATTAGCC+AGG + chr5_3:5780972-5780991 Msa0793950:three_prime_UTR 40.0%
TGCTGTTGTAGCAGAGAACA+AGG + chr5_3:5776224-5776243 Msa0793950:five_prime_UTR 45.0%
TGAGGACGCTACTCAACAAA+GGG + chr5_3:5776774-5776793 Msa0793950:CDS 45.0%
!! CAAAGGGATGGTTTTGCTTC+TGG + chr5_3:5776790-5776809 Msa0793950:CDS 45.0%
ATTTAGCAGGAACTCGAGTC+AGG + chr5_3:5777153-5777172 Msa0793950:CDS 45.0%
TATGCTCAAATTACTGGGCG+GGG - chr5_3:5777357-5777376 None:intergenic 45.0%
ATAAATATCTGCAGGCGGTG+AGG - chr5_3:5777396-5777415 None:intergenic 45.0%
TACTAGTGCTCTTCCCTGTT+TGG - chr5_3:5777698-5777717 None:intergenic 45.0%
GAGATTGTTCCCTTGAATGC+TGG + chr5_3:5777759-5777778 Msa0793950:CDS 45.0%
!!! GAGCTAGCCATTTTTTGGCA+GGG - chr5_3:5777812-5777831 None:intergenic 45.0%
!!! AGAGCTAGCCATTTTTTGGC+AGG - chr5_3:5777813-5777832 None:intergenic 45.0%
TCCATTACCTCCACTAGTAC+CGG - chr5_3:5777862-5777881 None:intergenic 45.0%
! TTCAATTCTACCACTGGCTG+AGG - chr5_3:5777906-5777925 None:intergenic 45.0%
TCGGCATTCAATTCTACCAC+TGG - chr5_3:5777912-5777931 None:intergenic 45.0%
CCTAGCTGATCCCTCAAAAT+CGG - chr5_3:5777931-5777950 None:intergenic 45.0%
GCTGCTAGAAGTTGTTTGGA+AGG - chr5_3:5777985-5778004 None:intergenic 45.0%
TCCAAACAACTTCTAGCAGC+TGG + chr5_3:5777985-5778004 Msa0793950:CDS 45.0%
CCAAACAACTTCTAGCAGCT+GGG + chr5_3:5777986-5778005 Msa0793950:CDS 45.0%
CAAACAACTTCTAGCAGCTG+GGG + chr5_3:5777987-5778006 Msa0793950:CDS 45.0%
! GTCTGCGATCGGGTAATTTT+CGG + chr5_3:5778062-5778081 Msa0793950:CDS 45.0%
CTTGCCCTTGAATAGTCACT+AGG - chr5_3:5778134-5778153 None:intergenic 45.0%
CCCCATCTTGAATAGTCACT+TGG - chr5_3:5778281-5778300 None:intergenic 45.0%
CTGTACTCGGAGAATCTTCA+AGG - chr5_3:5778325-5778344 None:intergenic 45.0%
AAGATGGATACAGCATGCCA+GGG + chr5_3:5778390-5778409 Msa0793950:CDS 45.0%
TTTCTTACCGTTTGGGTGAG+AGG + chr5_3:5778458-5778477 Msa0793950:CDS 45.0%
CAATTCACCTCTCACCCAAA+CGG - chr5_3:5778468-5778487 None:intergenic 45.0%
TTGGGTGAGAGGTGAATTGA+AGG + chr5_3:5778469-5778488 Msa0793950:CDS 45.0%
ATCACCTTCTTTCTGTCCTG+AGG - chr5_3:5778729-5778748 None:intergenic 45.0%
ACAAGGTTTCCACGTGTTCA+TGG + chr5_3:5778791-5778810 Msa0793950:CDS 45.0%
GCATTTGCAGGATGGAAAGA+AGG + chr5_3:5779263-5779282 Msa0793950:CDS 45.0%
GAGTGATGATCTTACCAAGC+AGG - chr5_3:5779380-5779399 None:intergenic 45.0%
! TGTGACCGTATTTTGTGGCA+TGG + chr5_3:5779490-5779509 Msa0793950:CDS 45.0%
! CGTATTTTGTGGCATGGAGA+AGG + chr5_3:5779496-5779515 Msa0793950:CDS 45.0%
ATAAGCCATAAACCGGTCTG+TGG - chr5_3:5779567-5779586 None:intergenic 45.0%
!!! TTATGGCTTATTTTGGGCCG+AGG + chr5_3:5779576-5779595 Msa0793950:CDS 45.0%
TCCATGGTTTGACTCAACCT+CGG - chr5_3:5779596-5779615 None:intergenic 45.0%
TTCTCGTTCCAGAATCCAAG+TGG + chr5_3:5779639-5779658 Msa0793950:CDS 45.0%
AAGTTCCTCCACTTGGATTC+TGG - chr5_3:5779650-5779669 None:intergenic 45.0%
TCAGTGTATCCGTGGGAATA+TGG - chr5_3:5779676-5779695 None:intergenic 45.0%
AATTGTGACCATCCGCGAAT+AGG - chr5_3:5779770-5779789 None:intergenic 45.0%
! ATCCCTTTGGGAGAGAGAAT+GGG - chr5_3:5780190-5780209 None:intergenic 45.0%
!!! AAAATGAATTTTTAATTTAA+AGG - chr5_3:5776837-5776856 None:intergenic 5.0%
CAAGACATTGTGACAGGGCA+AGG - chr5_3:5776312-5776331 None:intergenic 50.0%
CTGAGGACGCTACTCAACAA+AGG + chr5_3:5776773-5776792 Msa0793950:CDS 50.0%
GACGCTACTCAACAAAGGGA+TGG + chr5_3:5776778-5776797 Msa0793950:CDS 50.0%
!! AGGGATGGTTTTGCTTCTGG+AGG + chr5_3:5776793-5776812 Msa0793950:CDS 50.0%
!!! TCCTTTTTCAGGAGGTGGCT+TGG + chr5_3:5776965-5776984 Msa0793950:intron 50.0%
TCCAAGCCACCTCCTGAAAA+AGG - chr5_3:5776969-5776988 None:intergenic 50.0%
! GTGGCTTGGAATACAGAAGC+AGG + chr5_3:5776979-5776998 Msa0793950:CDS 50.0%
GTTGGTACATGGAATGTGGC+CGG + chr5_3:5777326-5777345 Msa0793950:CDS 50.0%
AACAGTCTTCCCGGTACTAG+TGG + chr5_3:5777849-5777868 Msa0793950:CDS 50.0%
CCATTACCTCCACTAGTACC+GGG - chr5_3:5777861-5777880 None:intergenic 50.0%
ACTGGCTGAGGTATAGGAGA+AGG - chr5_3:5777894-5777913 None:intergenic 50.0%
TTCTCCTATACCTCAGCCAG+TGG + chr5_3:5777893-5777912 Msa0793950:CDS 50.0%
! TCTACCACTGGCTGAGGTAT+AGG - chr5_3:5777900-5777919 None:intergenic 50.0%
!! CCGATTTTGAGGGATCAGCT+AGG + chr5_3:5777928-5777947 Msa0793950:CDS 50.0%
TTGTTTGGAAGGATCGCCGA+TGG - chr5_3:5777974-5777993 None:intergenic 50.0%
CCCAGCTGCTAGAAGTTGTT+TGG - chr5_3:5777989-5778008 None:intergenic 50.0%
AACTTCTAGCAGCTGGGGAA+TGG + chr5_3:5777992-5778011 Msa0793950:CDS 50.0%
CTGAATCTTCGGTCTAGTCG+TGG - chr5_3:5778041-5778060 None:intergenic 50.0%
GATCGCAGACGCTGAATCTT+CGG - chr5_3:5778052-5778071 None:intergenic 50.0%
GAAGATTCAGCGTCTGCGAT+CGG + chr5_3:5778051-5778070 Msa0793950:CDS 50.0%
AAGATTCAGCGTCTGCGATC+GGG + chr5_3:5778052-5778071 Msa0793950:CDS 50.0%
GCAGGTCCTCCATAAGACAT+CGG - chr5_3:5778359-5778378 None:intergenic 50.0%
TTATGGAGGACCTGCTGCAT+CGG + chr5_3:5778364-5778383 Msa0793950:CDS 50.0%
GAAGATGGATACAGCATGCC+AGG + chr5_3:5778389-5778408 Msa0793950:CDS 50.0%
CTGTCAGAACCATGAACACG+TGG - chr5_3:5778803-5778822 None:intergenic 50.0%
TTCTGACAGTGCGAAGTCTC+CGG + chr5_3:5778814-5778833 Msa0793950:CDS 50.0%
TCATGCTCAGGGATTGTCTC+CGG - chr5_3:5778836-5778855 None:intergenic 50.0%
CTTCGCAGAACGGTAGTTGA+GGG - chr5_3:5779083-5779102 None:intergenic 50.0%
CAATAAGCGCCTTCGCAGAA+CGG - chr5_3:5779093-5779112 None:intergenic 50.0%
AAGAGAGGTCGTGCATTTGC+AGG + chr5_3:5779251-5779270 Msa0793950:CDS 50.0%
! GGTGTTCGCCTTTTCTCCTT+TGG - chr5_3:5779359-5779378 None:intergenic 50.0%
AGAAAAGGCGAACACCTGCT+TGG + chr5_3:5779363-5779382 Msa0793950:CDS 50.0%
! TCAGACCACAGACCGGTTTA+TGG + chr5_3:5779559-5779578 Msa0793950:CDS 50.0%
TCGTTCCAGAATCCAAGTGG+AGG + chr5_3:5779642-5779661 Msa0793950:CDS 50.0%
CTCTCTATCCTATTCGCGGA+TGG + chr5_3:5779759-5779778 Msa0793950:intron 50.0%
! TCGAGCATTAAAGGTGCGGT+TGG - chr5_3:5779884-5779903 None:intergenic 50.0%
CCTACCGAACTTACAAGGAG+CGG + chr5_3:5779947-5779966 Msa0793950:intron 50.0%
CCAACCGCTCCTTGTAAGTT+CGG - chr5_3:5779954-5779973 None:intergenic 50.0%
CGAACTTACAAGGAGCGGTT+GGG + chr5_3:5779952-5779971 Msa0793950:intron 50.0%
GAACTTACAAGGAGCGGTTG+GGG + chr5_3:5779953-5779972 Msa0793950:intron 50.0%
ATGCCCATTCTCTCTCCCAA+AGG + chr5_3:5780184-5780203 Msa0793950:intron 50.0%
TGCCCATTCTCTCTCCCAAA+GGG + chr5_3:5780185-5780204 Msa0793950:intron 50.0%
! CATCCCTTTGGGAGAGAGAA+TGG - chr5_3:5780191-5780210 None:intergenic 50.0%
AGGCAGCAAGACATCCCTTT+GGG - chr5_3:5780202-5780221 None:intergenic 50.0%
AAGGCAGCAAGACATCCCTT+TGG - chr5_3:5780203-5780222 None:intergenic 50.0%
! TTGGCCAGACCGAAAGTACA+AGG + chr5_3:5780238-5780257 Msa0793950:intron 50.0%
GCAGGAACTCGAGTCAGGTT+AGG + chr5_3:5777158-5777177 Msa0793950:CDS 55.0%
ATTACTGGGCGGGGATCTTC+CGG - chr5_3:5777348-5777367 None:intergenic 55.0%
AGTCTTCCCGGTACTAGTGG+AGG + chr5_3:5777852-5777871 Msa0793950:CDS 55.0%
CCCGGTACTAGTGGAGGTAA+TGG + chr5_3:5777858-5777877 Msa0793950:CDS 55.0%
AGTCGTGGTTGCACGGTTGA+AGG - chr5_3:5778026-5778045 None:intergenic 55.0%
TCGGTCTAGTCGTGGTTGCA+CGG - chr5_3:5778033-5778052 None:intergenic 55.0%
TCACTCGGTCGAGAGTCACT+TGG - chr5_3:5778152-5778171 None:intergenic 55.0%
TATGGAGGACCTGCTGCATC+GGG + chr5_3:5778365-5778384 Msa0793950:CDS 55.0%
CCTTCGCAGAACGGTAGTTG+AGG - chr5_3:5779084-5779103 None:intergenic 55.0%
CCTCAACTACCGTTCTGCGA+AGG + chr5_3:5779081-5779100 Msa0793950:CDS 55.0%
GAGGTCGTGCATTTGCAGGA+TGG + chr5_3:5779255-5779274 Msa0793950:CDS 55.0%
GCCGAGGTTGAGTCAAACCA+TGG + chr5_3:5779592-5779611 Msa0793950:CDS 55.0%
CCGCTCCTTGTAAGTTCGGT+AGG - chr5_3:5779950-5779969 None:intergenic 55.0%
CCGAACTTACAAGGAGCGGT+TGG + chr5_3:5779951-5779970 Msa0793950:intron 55.0%
CCATCTTCACCCGATGCAGC+AGG - chr5_3:5778377-5778396 None:intergenic 60.0%
CCTGCTGCATCGGGTGAAGA+TGG + chr5_3:5778374-5778393 Msa0793950:CDS 60.0%
CTTACAAGGAGCGGTTGGGG+AGG + chr5_3:5779956-5779975 Msa0793950:intron 60.0%
CGAGTCAGGTTAGGCGAGCG+AGG + chr5_3:5777167-5777186 Msa0793950:CDS 65.0%
! ACAGCATGCCAGGGCGCTCA+AGG + chr5_3:5778399-5778418 Msa0793950:CDS 65.0%
AGGCTGTACCTTGAGCGCCC+TGG - chr5_3:5778410-5778429 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 5776216 5781384 5776216 ID=Msa0793950;Name=Msa0793950
chr5_3 mRNA 5776216 5781384 5776216 ID=Msa0793950-mRNA-1;Parent=Msa0793950;Name=Msa0793950-mRNA-1;_AED=0.06;_eAED=0.06;_QI=380|1|1|1|0.75|0.84|13|566|622
chr5_3 exon 5776216 5776625 5776216 ID=Msa0793950-mRNA-1:exon:2261;Parent=Msa0793950-mRNA-1
chr5_3 exon 5776721 5776814 5776721 ID=Msa0793950-mRNA-1:exon:2262;Parent=Msa0793950-mRNA-1
chr5_3 exon 5776976 5777050 5776976 ID=Msa0793950-mRNA-1:exon:2263;Parent=Msa0793950-mRNA-1
chr5_3 exon 5777149 5777233 5777149 ID=Msa0793950-mRNA-1:exon:2264;Parent=Msa0793950-mRNA-1
chr5_3 exon 5777319 5777423 5777319 ID=Msa0793950-mRNA-1:exon:2265;Parent=Msa0793950-mRNA-1
chr5_3 exon 5777752 5778556 5777752 ID=Msa0793950-mRNA-1:exon:2266;Parent=Msa0793950-mRNA-1
chr5_3 exon 5778662 5778855 5778662 ID=Msa0793950-mRNA-1:exon:2267;Parent=Msa0793950-mRNA-1
chr5_3 exon 5779042 5779150 5779042 ID=Msa0793950-mRNA-1:exon:2268;Parent=Msa0793950-mRNA-1
chr5_3 exon 5779236 5779384 5779236 ID=Msa0793950-mRNA-1:exon:2269;Parent=Msa0793950-mRNA-1
chr5_3 exon 5779489 5779753 5779489 ID=Msa0793950-mRNA-1:exon:2270;Parent=Msa0793950-mRNA-1
chr5_3 exon 5780617 5780678 5780617 ID=Msa0793950-mRNA-1:exon:2271;Parent=Msa0793950-mRNA-1
chr5_3 exon 5780791 5780993 5780791 ID=Msa0793950-mRNA-1:exon:2272;Parent=Msa0793950-mRNA-1
chr5_3 exon 5781126 5781384 5781126 ID=Msa0793950-mRNA-1:exon:2273;Parent=Msa0793950-mRNA-1
chr5_3 five_prime_UTR 5776216 5776595 5776216 ID=Msa0793950-mRNA-1:five_prime_utr;Parent=Msa0793950-mRNA-1
chr5_3 CDS 5776596 5776625 5776596 ID=Msa0793950-mRNA-1:cds;Parent=Msa0793950-mRNA-1
chr5_3 CDS 5776721 5776814 5776721 ID=Msa0793950-mRNA-1:cds;Parent=Msa0793950-mRNA-1
chr5_3 CDS 5776976 5777050 5776976 ID=Msa0793950-mRNA-1:cds;Parent=Msa0793950-mRNA-1
chr5_3 CDS 5777149 5777233 5777149 ID=Msa0793950-mRNA-1:cds;Parent=Msa0793950-mRNA-1
chr5_3 CDS 5777319 5777423 5777319 ID=Msa0793950-mRNA-1:cds;Parent=Msa0793950-mRNA-1
chr5_3 CDS 5777752 5778556 5777752 ID=Msa0793950-mRNA-1:cds;Parent=Msa0793950-mRNA-1
chr5_3 CDS 5778662 5778855 5778662 ID=Msa0793950-mRNA-1:cds;Parent=Msa0793950-mRNA-1
chr5_3 CDS 5779042 5779150 5779042 ID=Msa0793950-mRNA-1:cds;Parent=Msa0793950-mRNA-1
chr5_3 CDS 5779236 5779384 5779236 ID=Msa0793950-mRNA-1:cds;Parent=Msa0793950-mRNA-1
chr5_3 CDS 5779489 5779711 5779489 ID=Msa0793950-mRNA-1:cds;Parent=Msa0793950-mRNA-1
chr5_3 three_prime_UTR 5779712 5779753 5779712 ID=Msa0793950-mRNA-1:three_prime_utr;Parent=Msa0793950-mRNA-1
chr5_3 three_prime_UTR 5780617 5780678 5780617 ID=Msa0793950-mRNA-1:three_prime_utr;Parent=Msa0793950-mRNA-1
chr5_3 three_prime_UTR 5780791 5780993 5780791 ID=Msa0793950-mRNA-1:three_prime_utr;Parent=Msa0793950-mRNA-1
chr5_3 three_prime_UTR 5781126 5781384 5781126 ID=Msa0793950-mRNA-1:three_prime_utr;Parent=Msa0793950-mRNA-1
Gene Sequence

>Msa0793950

ATGAGAGATGAGAATACCAAGAAAAGCAAGCTCTCATGGTCAAAGAAAATGGTCAGAAAATTCTTCAACATCAAATGCAAAACTGAGGACGCTACTCAACAAAGGGATGGTTTTGCTTCTGGAGGAGGTGGCTTGGAATACAGAAGCAGGAGTAGCTTGTCTGAGAGAGAGCCAAGCACAATCAAAAAGAGCAAAACAGAGAAATTTAGCAGGAACTCGAGTCAGGTTAGGCGAGCGAGGATGAACCTTGACCATCCTAGAATTATAGATGTCCATAACTACAGCATTTTTGTTGGTACATGGAATGTGGCCGGAAGATCCCCGCCCAGTAATTTGAGCATAAATGATTGGCTTCACGCCTCACCGCCTGCAGATATTTATGTTCTTGGATTTCAAGAGATTGTTCCCTTGAATGCTGGTAATATCTTAGGGGCAGAAGATAATGGCCCTGCCAAAAAATGGCTAGCTCTCATTGGAAATACTTTAAACAGTCTTCCCGGTACTAGTGGAGGTAATGGATACTATACGCCTTCTCCTATACCTCAGCCAGTGGTAGAATTGAATGCCGATTTTGAGGGATCAGCTAGGCAGAAGAATTCATCATTCTTCCATCGGCGATCCTTCCAAACAACTTCTAGCAGCTGGGGAATGGACAATGATCCTTCAACCGTGCAACCACGACTAGACCGAAGATTCAGCGTCTGCGATCGGGTAATTTTCGGTAACAGGAAAAGTGACTTTGATCCTAGTTTAAGATGGGGTTATAGGCCTAGTGACTATTCAAGGGCAAGTGACTCTCGACCGAGTGACTATTATACAAGGCCAAGTGACTCTCGACCGAGTGACTATTATTCAAGGGCAAGTGACTACTCTCGACCGAGTGACTATTATTCAAGGGCAAGCGACTACTCTCGACCAAGTGACTATTCAAGATGGGGTTCATCTGATGATGACAATGGCCTTGAAGATTCTCCGAGTACAGTCTTGTTTTCACCGATGTCTTATGGAGGACCTGCTGCATCGGGTGAAGATGGATACAGCATGCCAGGGCGCTCAAGGTACAGCCTTGTTGCAAGTAAACAAATGGTTGGAATCTTTCTTACCGTTTGGGTGAGAGGTGAATTGAAGGATATTGTTAAAAACATGAAAGTATCATGTGTTGGTAGAGGATTGATGGGTTATCTTGGAAATAAGGGATCCATCTCAATTAGCATGTCTCTGCATGAAACAAGCTTCTGCTTTATTTGTAGCCATTTAACCTCAGGACAGAAAGAAGGTGATGAACTAAGAAGAAACTCTGATGTACTGGAGATTCTTAAAAAGACAAGGTTTCCACGTGTTCATGGTTCTGACAGTGCGAAGTCTCCGGAGACAATCCCTGAGCATGATCGAATTATATGGCTTGGAGATTTAAATTATCGAATAGCCCTCAACTACCGTTCTGCGAAGGCGCTTATTGAGATGCAAAACTGGAGAGCATTGTTAGAGAATGACCAGTTGAGAATAGAGCAAAAGAGAGGTCGTGCATTTGCAGGATGGAAAGAAGGGAAGATTTATTTCCCTCCAACATATAAGTACTCAACCAATTCAGATAGGTATGCTGGAGATGATATGCATCCAAAGGAGAAAAGGCGAACACCTGCTTGGTGTGACCGTATTTTGTGGCATGGAGAAGGTCTACGTCAAATATCTTATGTACGCGGAGAATCAAGATTTTCAGACCACAGACCGGTTTATGGCTTATTTTGGGCCGAGGTTGAGTCAAACCATGGAAAATTGAAGAAAAGTATGAGCTGTTCTCGTTCCAGAATCCAAGTGGAGGAACTTTTACCATATTCCCACGGATACACTGAGCTAAATTTTTTCTGA
Protein sequence

>Msa0793950

MRDENTKKSKLSWSKKMVRKFFNIKCKTEDATQQRDGFASGGGGLEYRSRSSLSEREPSTIKKSKTEKFSRNSSQVRRARMNLDHPRIIDVHNYSIFVGTWNVAGRSPPSNLSINDWLHASPPADIYVLGFQEIVPLNAGNILGAEDNGPAKKWLALIGNTLNSLPGTSGGNGYYTPSPIPQPVVELNADFEGSARQKNSSFFHRRSFQTTSSSWGMDNDPSTVQPRLDRRFSVCDRVIFGNRKSDFDPSLRWGYRPSDYSRASDSRPSDYYTRPSDSRPSDYYSRASDYSRPSDYYSRASDYSRPSDYSRWGSSDDDNGLEDSPSTVLFSPMSYGGPAASGEDGYSMPGRSRYSLVASKQMVGIFLTVWVRGELKDIVKNMKVSCVGRGLMGYLGNKGSISISMSLHETSFCFICSHLTSGQKEGDELRRNSDVLEILKKTRFPRVHGSDSAKSPETIPEHDRIIWLGDLNYRIALNYRSAKALIEMQNWRALLENDQLRIEQKRGRAFAGWKEGKIYFPPTYKYSTNSDRYAGDDMHPKEKRRTPAWCDRILWHGEGLRQISYVRGESRFSDHRPVYGLFWAEVESNHGKLKKSMSCSRSRIQVEELLPYSHGYTELNFF*