AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0749610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749610 MtrunA17_Chr5g0394901 99.177 486 4 0 1 486 137 622 0.0 996
Msa0749610 MtrunA17_Chr1g0205121 82.922 486 46 1 1 486 135 583 0.0 828
Msa0749610 MtrunA17_Chr7g0260081 60.166 482 125 8 1 480 135 551 0.0 550
Msa0749610 MtrunA17_Chr1g0185281 73.333 315 78 4 175 486 248 559 1.01e-159 464
Msa0749610 MtrunA17_Chr1g0185281 66.102 118 38 1 1 118 135 250 7.90e-43 159
Msa0749610 MtrunA17_Chr8g0382571 59.259 270 108 1 213 480 208 477 3.30e-115 347
Msa0749610 MtrunA17_Chr7g0263111 61.660 253 88 1 215 467 168 411 1.00e-107 328
Msa0749610 MtrunA17_Chr8g0355021 56.981 265 111 2 217 480 226 488 5.02e-107 327
Msa0749610 MtrunA17_Chr4g0054941 38.105 475 240 9 1 461 117 551 4.03e-97 304
Msa0749610 MtrunA17_Chr4g0054951 38.163 490 243 12 1 474 119 564 1.53e-96 302
Msa0749610 MtrunA17_Chr6g0466801 56.322 261 107 4 215 474 366 620 7.78e-95 300
Msa0749610 MtrunA17_Chr1g0201271 55.385 260 109 4 215 473 368 621 2.15e-94 298
Msa0749610 MtrunA17_Chr5g0400311 51.880 266 124 2 215 479 364 626 2.88e-90 288
Msa0749610 MtrunA17_Chr6g0479511 52.340 235 108 2 218 451 152 383 4.04e-86 270
Msa0749610 MtrunA17_Chr1g0165011 54.008 237 103 2 218 451 177 410 6.06e-85 269
Msa0749610 MtrunA17_Chr8g0375751 50.195 257 122 3 218 471 146 399 4.96e-81 258
Msa0749610 MtrunA17_Chr6g0452181 51.240 242 112 4 215 451 160 400 3.69e-79 253
Msa0749610 MtrunA17_Chr1g0189231 32.287 223 128 4 216 419 606 824 1.47e-30 126
Msa0749610 MtrunA17_Chr6g0488541 38.889 108 63 2 313 419 793 898 1.73e-16 82.8
Msa0749610 MtrunA17_Chr1g0154491 33.918 171 96 7 254 422 143 298 6.19e-16 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0749610 AT1G05470.2 75.252 497 98 8 1 486 135 617 0.0 728
Msa0749610 AT1G05470.1 75.252 497 98 8 1 486 135 617 0.0 728
Msa0749610 AT2G32010.2 73.361 488 101 6 1 486 134 594 0.0 718
Msa0749610 AT2G32010.1 73.361 488 101 6 1 486 134 594 0.0 718
Msa0749610 AT2G32010.4 73.361 488 101 6 1 486 134 594 0.0 718
Msa0749610 AT2G32010.3 73.361 488 101 6 1 486 134 594 0.0 718
Msa0749610 AT3G63240.2 58.230 486 130 8 1 484 131 545 0.0 530
Msa0749610 AT3G63240.1 58.230 486 130 8 1 484 131 545 0.0 530
Msa0749610 AT5G65090.2 57.721 272 112 1 212 480 193 464 4.60e-116 350
Msa0749610 AT5G65090.3 57.721 272 112 1 212 480 256 527 2.87e-115 350
Msa0749610 AT5G65090.1 57.721 272 112 1 212 480 256 527 2.87e-115 350
Msa0749610 AT5G04980.4 63.900 241 86 1 217 456 156 396 5.77e-111 334
Msa0749610 AT5G04980.1 63.900 241 86 1 217 456 191 431 4.05e-110 333
Msa0749610 AT5G04980.3 63.900 241 86 1 217 456 191 431 4.05e-110 333
Msa0749610 AT5G04980.2 63.900 241 86 1 217 456 220 460 4.57e-110 334
Msa0749610 AT2G37440.2 57.857 280 94 5 211 474 107 378 1.62e-106 323
Msa0749610 AT2G37440.1 58.242 273 91 4 218 474 194 459 2.50e-105 322
Msa0749610 AT2G37440.3 58.242 273 91 4 218 474 194 459 2.50e-105 322
Msa0749610 AT4G18010.1 51.698 265 124 2 198 461 369 630 1.04e-90 290
Msa0749610 AT1G34120.5 49.802 253 123 3 218 469 182 431 3.71e-86 271
Msa0749610 AT2G01900.3 54.701 234 102 2 218 450 160 390 7.21e-86 271
Msa0749610 AT2G01900.1 54.701 234 102 2 218 450 152 382 8.32e-86 270
Msa0749610 AT1G71710.1 49.808 261 125 3 215 474 405 660 2.46e-85 276
Msa0749610 AT1G71710.2 49.808 261 125 3 215 474 396 651 2.65e-85 276
Msa0749610 AT1G34120.1 49.802 253 123 3 218 469 333 582 3.93e-84 271
Msa0749610 AT1G34120.2 49.802 253 123 3 218 469 337 586 4.28e-84 271
Msa0749610 AT1G34120.3 49.407 253 123 4 218 469 337 585 1.43e-81 264
Msa0749610 AT2G01900.2 52.991 234 97 3 218 450 152 373 1.45e-80 256
Msa0749610 AT4G18010.2 51.389 216 102 1 198 413 369 581 4.94e-72 239
Msa0749610 AT1G34120.4 51.748 143 68 1 218 360 333 474 5.58e-46 167
Msa0749610 AT2G43900.2 31.915 235 132 6 209 419 649 879 1.65e-31 129
Msa0749610 AT2G43900.1 31.915 235 132 6 209 419 649 879 1.78e-31 129
Msa0749610 AT1G65580.2 28.826 281 157 6 209 450 344 620 3.74e-30 125
Msa0749610 AT1G65580.1 28.826 281 157 6 209 450 610 886 4.48e-30 125
Msa0749610 AT1G05630.3 30.213 235 136 5 209 419 643 873 7.17e-30 124
Msa0749610 AT1G05630.2 30.213 235 136 5 209 419 643 873 9.55e-30 124
Msa0749610 AT2G31830.1 29.362 235 138 5 209 419 652 882 3.93e-28 119
Msa0749610 AT2G31830.2 29.362 235 138 5 209 419 652 882 4.16e-28 119
Msa0749610 AT2G31830.3 29.362 235 138 5 209 419 652 882 4.56e-28 119
Msa0749610 AT1G47510.4 35.025 197 101 10 254 442 84 261 3.18e-20 90.9
Msa0749610 AT1G47510.1 35.025 197 101 10 254 442 146 323 6.50e-20 91.3
Msa0749610 AT1G05630.1 39.815 108 60 3 313 419 804 907 6.23e-16 81.6
Msa0749610 AT1G47510.2 40.171 117 58 5 333 442 149 260 2.96e-13 70.5

Find 147 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTACCTTTCTTGGTATT+TGG 0.086381 5_2:+3152989 None:intergenic
AAAATAAATGTTACCTTTCT+TGG 0.140474 5_2:+3152982 None:intergenic
GACCGGTTTATGGCTTATTT+TGG 0.166786 5_2:-3154083 Msa0749610:CDS
TTGAATGCTGGTAATATCTT+AGG 0.183150 5_2:-3155881 Msa0749610:CDS
AAAGTTGAGTGTTTGTTAAT+AGG 0.198761 5_2:+3152731 None:intergenic
TCAGACCACAGACCGGTTTA+TGG 0.223819 5_2:-3154093 Msa0749610:CDS
AAGTTCCTCCACTTGGATTC+TGG 0.230810 5_2:+3154005 None:intergenic
CTTTCTGTCCTGAGGTTAAA+TGG 0.244476 5_2:+3154934 None:intergenic
CTAGTTTAAGATGGGGTTAT+AGG 0.246789 5_2:-3155544 Msa0749610:CDS
GATGGGTTATCTTGGAAATA+AGG 0.249769 5_2:-3155117 Msa0749610:intron
AAGTTGAGTGTTTGTTAATA+GGG 0.261606 5_2:+3152732 None:intergenic
TGTTACCTTTCTTGGTATTT+GGG 0.274333 5_2:+3152990 None:intergenic
TTGGAATCTTTCTTACCGTT+TGG 0.325412 5_2:-3155202 Msa0749610:CDS
CCCAGCTGCTAGAAGTTGTT+TGG 0.335096 5_2:+3155666 None:intergenic
AATAATGATTGTGCAGGATA+TGG 0.339706 5_2:+3152687 None:intergenic
TGGAATCTTTCTTACCGTTT+GGG 0.342146 5_2:-3155201 Msa0749610:CDS
CGCTTATTGAGATGCAAAAC+TGG 0.345003 5_2:-3154548 Msa0749610:CDS
TCAGTGTATCCGTGGGAATA+TGG 0.367650 5_2:+3153979 None:intergenic
ATGATGATTATGATGTTTGA+TGG 0.380475 5_2:+3152809 None:intergenic
ACAAGGTTTCCACGTGTTCA+TGG 0.384598 5_2:-3154861 Msa0749610:CDS
AAGAGAGGTCGTGCATTTGC+AGG 0.385658 5_2:-3154401 Msa0749610:CDS
TCTACCACTGGCTGAGGTAT+AGG 0.390446 5_2:+3155755 None:intergenic
TTCAGTCGAATTATATGGCT+TGG 0.390737 5_2:-3154615 Msa0749610:intron
GATAGAGAGCTTACTTGAAC+AGG 0.401752 5_2:+3153907 None:intergenic
AGAGGATTGATGGGTTATCT+TGG 0.407800 5_2:-3155125 Msa0749610:CDS
TCCAGCATACCTATCTGAAT+TGG 0.410036 5_2:+3154331 None:intergenic
TGAATGCTGGTAATATCTTA+GGG 0.422048 5_2:-3155880 Msa0749610:CDS
GATCGCAGACGCTGAATCTT+CGG 0.422303 5_2:+3155603 None:intergenic
TACTGATCATGTGTTGCTGT+TGG 0.429478 5_2:+3152836 None:intergenic
TCCAAACAACTTCTAGCAGC+TGG 0.429591 5_2:-3155667 Msa0749610:CDS
TAAGATATTACCAGCATTCA+AGG 0.429808 5_2:+3155883 None:intergenic
GTAAATTCTTACTCATGCTC+AGG 0.431042 5_2:+3154807 None:intergenic
ACTGATCATGTGTTGCTGTT+GGG 0.435438 5_2:+3152837 None:intergenic
ATCTTAGGGGCAGAAGATAA+TGG 0.440365 5_2:-3155866 Msa0749610:CDS
ATGTGTTGGTAGAGGATTGA+TGG 0.443054 5_2:-3155135 Msa0749610:CDS
CCTAGCTGATCCCTCAAAAT+CGG 0.445611 5_2:+3155724 None:intergenic
ATAGGCCTAGTGACTATTCA+AGG 0.450945 5_2:-3155526 Msa0749610:CDS
ACTTTGATCCTAGTTTAAGA+TGG 0.450999 5_2:-3155553 Msa0749610:CDS
AGTCGTGGTTGCACGGTTGA+AGG 0.453437 5_2:+3155629 None:intergenic
AAGAAGAAACTCTGATGTAC+TGG 0.455706 5_2:-3154898 Msa0749610:CDS
CTTCTCCATGCCACAAAATA+CGG 0.455983 5_2:+3154157 None:intergenic
AATACTTTAAACAGTCTTCC+CGG 0.459685 5_2:-3155812 Msa0749610:CDS
ACCAATTCAGATAGGTATGC+TGG 0.459904 5_2:-3154332 Msa0749610:CDS
CTTTGATCCTAGTTTAAGAT+GGG 0.463958 5_2:-3155552 Msa0749610:CDS
GACCGAGTGACTATTATTCA+AGG 0.467810 5_2:-3155415 Msa0749610:CDS
GACCGAGTGACTATTATTCA+AGG 0.467810 5_2:-3155454 Msa0749610:CDS
GCCCAAAATAAGCCATAAAC+CGG 0.473387 5_2:+3154081 None:intergenic
ACATTGTCAAAATCATCATA+TGG 0.475557 5_2:-3152199 Msa0749610:three_prime_UTR
CCTGCTGCATCGGGTGAAGA+TGG 0.478117 5_2:-3155278 Msa0749610:CDS
GTTGAGTACTTATATGTTGG+AGG 0.480485 5_2:+3154353 None:intergenic
ATTTGTAGCCATTTAACCTC+AGG 0.480590 5_2:-3154942 Msa0749610:CDS
TTGGTTGAGTACTTATATGT+TGG 0.482564 5_2:+3154350 None:intergenic
ATCACCTTCTTTCTGTCCTG+AGG 0.483661 5_2:+3154926 None:intergenic
TATGGAGGACCTGCTGCATC+GGG 0.488530 5_2:-3155287 Msa0749610:CDS
TTATGGAGGACCTGCTGCAT+CGG 0.488726 5_2:-3155288 Msa0749610:CDS
AAGATTCAGCGTCTGCGATC+GGG 0.489181 5_2:-3155600 Msa0749610:CDS
CTGTACTCGGAGAATCTTCA+AGG 0.492802 5_2:+3155330 None:intergenic
TCCATTACCTCCACTAGTAC+CGG 0.492802 5_2:+3155793 None:intergenic
AACTTCTAGCAGCTGGGGAA+TGG 0.493393 5_2:-3155660 Msa0749610:CDS
TCGGTCTAGTCGTGGTTGCA+CGG 0.493590 5_2:+3155622 None:intergenic
TTCTGACAGTGCGAAGTCTC+CGG 0.493689 5_2:-3154838 Msa0749610:CDS
CCTTGTTGCAAGTAAACAAA+TGG 0.494231 5_2:-3155225 Msa0749610:CDS
CCCGGTACTAGTGGAGGTAA+TGG 0.496176 5_2:-3155794 Msa0749610:CDS
ATGGTAAAAGTTCCTCCACT+TGG 0.497925 5_2:+3153998 None:intergenic
CTATAACCCCATCTTAAACT+AGG 0.499596 5_2:+3155545 None:intergenic
AACAGTCTTCCCGGTACTAG+TGG 0.503949 5_2:-3155803 Msa0749610:CDS
TCTCTTTCATCAAACTTCAA+AGG 0.504337 5_2:+3153023 None:intergenic
CTTCGCAGAACGGTAGTTGA+GGG 0.507483 5_2:+3154572 None:intergenic
TTTCTTACCGTTTGGGTGAG+AGG 0.507778 5_2:-3155194 Msa0749610:CDS
AATTATGAACAAAGTGAAGC+TGG 0.510484 5_2:+3152760 None:intergenic
GCATTTGCAGGATGGAAAGA+AGG 0.511017 5_2:-3154389 Msa0749610:CDS
GAGATTGTTCCCTTGAATGC+TGG 0.512043 5_2:-3155893 None:intergenic
ATATGCATCCAAAGGAGAAA+AGG 0.514337 5_2:-3154304 Msa0749610:CDS
CCCCATCTTGAATAGTCACT+TGG 0.520446 5_2:+3155374 None:intergenic
AGTACTCAACCAATTCAGAT+AGG 0.522078 5_2:-3154340 Msa0749610:CDS
GAAGATTCAGCGTCTGCGAT+CGG 0.522328 5_2:-3155601 Msa0749610:CDS
CAGAGACATGCTAATTGAGA+TGG 0.523126 5_2:+3154986 None:intergenic
CATTTCCCAAATACCAAGAA+AGG 0.524566 5_2:-3152995 Msa0749610:intron
GAAGATGGATACAGCATGCC+AGG 0.525537 5_2:-3155263 Msa0749610:CDS
TTGGGTGAGAGGTGAATTGA+AGG 0.526319 5_2:-3155183 Msa0749610:CDS
CTGCACAATCATTATTAGCC+AGG 0.530772 5_2:-3152680 Msa0749610:intron
CCAAACAACTTCTAGCAGCT+GGG 0.532075 5_2:-3155666 Msa0749610:CDS
CTGGCTAATAATGATTGTGC+AGG 0.532624 5_2:+3152681 None:intergenic
CCATCTTCACCCGATGCAGC+AGG 0.533140 5_2:+3155278 None:intergenic
ACCAAGTGACTATTCAAGAT+GGG 0.534582 5_2:-3155375 Msa0749610:CDS
GTTGCAAGTAAACAAATGGT+TGG 0.537426 5_2:-3155221 Msa0749610:CDS
TCATGCTCAGGGATTGTCTC+CGG 0.540169 5_2:+3154819 None:intergenic
CAATAAGCGCCTTCGCAGAA+CGG 0.548412 5_2:+3154562 None:intergenic
CTTGCCCTTGAATAGTCACT+AGG 0.549171 5_2:+3155521 None:intergenic
CCATTTGTTTACTTGCAACA+AGG 0.550429 5_2:+3155225 None:intergenic
GACCAAGTGACTATTCAAGA+TGG 0.550949 5_2:-3155376 Msa0749610:CDS
AAAGTATCATGTGTTGGTAG+AGG 0.555572 5_2:-3155143 Msa0749610:CDS
CAATTCACCTCTCACCCAAA+CGG 0.559109 5_2:+3155187 None:intergenic
TTGAGTACTTATATGTTGGA+GGG 0.559129 5_2:+3154354 None:intergenic
AGAATTCATCATTCTTCCAT+CGG 0.559350 5_2:-3155697 Msa0749610:CDS
CCTTCGCAGAACGGTAGTTG+AGG 0.561020 5_2:+3154571 None:intergenic
AACATGAAAGTATCATGTGT+TGG 0.564736 5_2:-3155149 Msa0749610:CDS
GCTGCTAGAAGTTGTTTGGA+AGG 0.564774 5_2:+3155670 None:intergenic
GAGTGATGATCTTACCAAGC+AGG 0.565102 5_2:+3154275 None:intergenic
AGAAAAGGCGAACACCTGCT+TGG 0.567924 5_2:-3154289 Msa0749610:intron
TCGGCATTCAATTCTACCAC+TGG 0.569184 5_2:+3155743 None:intergenic
TTGTTTGGAAGGATCGCCGA+TGG 0.573538 5_2:+3155681 None:intergenic
AGGCTGTACCTTGAGCGTCC+TGG 0.574607 5_2:+3155245 None:intergenic
AATTTAGCTCAGTGTATCCG+TGG 0.574646 5_2:+3153971 None:intergenic
TCCATGGTTTGACTCAACCT+CGG 0.575355 5_2:+3154059 None:intergenic
TTCAATTCTACCACTGGCTG+AGG 0.577913 5_2:+3155749 None:intergenic
TGTGTTGGTAGAGGATTGAT+GGG 0.580183 5_2:-3155134 Msa0749610:CDS
GGTGAAAACAAGACTGTACT+CGG 0.580831 5_2:+3155317 None:intergenic
ACTATTTCTATTCAGCAAGC+GGG 0.581688 5_2:-3153050 Msa0749610:intron
TTAACCTCAGGACAGAAAGA+AGG 0.589550 5_2:-3154930 Msa0749610:CDS
GAGGTCGTGCATTTGCAGGA+TGG 0.593442 5_2:-3154397 Msa0749610:CDS
GACCGAGTGACTATTATACA+AGG 0.594922 5_2:-3155490 Msa0749610:CDS
ACAGCATGCCAGGACGCTCA+AGG 0.602415 5_2:-3155253 Msa0749610:CDS
CATTTGCAGGATGGAAAGAA+GGG 0.602587 5_2:-3154388 Msa0749610:CDS
GCCCTTGAATAATAGTCACT+CGG 0.602807 5_2:+3155413 None:intergenic
CTGAATCTTCGGTCTAGTCG+TGG 0.604034 5_2:+3155614 None:intergenic
TAAATTCTTACTCATGCTCA+GGG 0.606090 5_2:+3154808 None:intergenic
CCATTACCTCCACTAGTACC+GGG 0.610322 5_2:+3155794 None:intergenic
CCTCAACTACCGTTCTGCGA+AGG 0.610354 5_2:-3154571 Msa0749610:CDS
GCCCTTGAATAATAGTCACT+CGG 0.611858 5_2:+3155452 None:intergenic
TGATTGTGCAGGATATGGTA+TGG 0.614521 5_2:+3152692 None:intergenic
TTTGATCCTAGTTTAAGATG+GGG 0.618992 5_2:-3155551 Msa0749610:CDS
ACTGGCTGAGGTATAGGAGA+AGG 0.619090 5_2:+3155761 None:intergenic
TGGAGATGATATGCATCCAA+AGG 0.623938 5_2:-3154312 Msa0749610:CDS
ACCGAGTGACTATTATTCAA+GGG 0.629387 5_2:-3155414 Msa0749610:CDS
ACCGAGTGACTATTATTCAA+GGG 0.629387 5_2:-3155453 Msa0749610:CDS
CAAACAACTTCTAGCAGCTG+GGG 0.630987 5_2:-3155665 Msa0749610:CDS
AAGATATTACCAGCATTCAA+GGG 0.633888 5_2:+3155884 None:intergenic
GGCCTTGTATAATAGTCACT+CGG 0.636022 5_2:+3155488 None:intergenic
ATTTAGCTCAGTGTATCCGT+GGG 0.637611 5_2:+3153972 None:intergenic
GAATGCTGGTAATATCTTAG+GGG 0.639487 5_2:-3155879 Msa0749610:CDS
ATAAGCCATAAACCGGTCTG+TGG 0.641383 5_2:+3154088 None:intergenic
TTGTCAAAATCATCATATGG+AGG 0.642044 5_2:-3152196 Msa0749610:three_prime_UTR
ATAGAGAGCTTACTTGAACA+GGG 0.644271 5_2:+3153908 None:intergenic
TTCTCCTATACCTCAGCCAG+TGG 0.645089 5_2:-3155759 Msa0749610:CDS
TTCTCGTTCCAGAATCCAAG+TGG 0.646700 5_2:-3154013 Msa0749610:CDS
CTGTCAGAACCATGAACACG+TGG 0.651771 5_2:+3154852 None:intergenic
GCCGAGGTTGAGTCAAACCA+TGG 0.652096 5_2:-3154060 Msa0749610:CDS
TAGGCCTAGTGACTATTCAA+GGG 0.652233 5_2:-3155525 Msa0749610:CDS
CCAAGTGACTATTCAAGATG+GGG 0.653125 5_2:-3155374 Msa0749610:CDS
AGTCTTCCCGGTACTAGTGG+AGG 0.661740 5_2:-3155800 Msa0749610:CDS
TCGTTCCAGAATCCAAGTGG+AGG 0.670823 5_2:-3154010 Msa0749610:CDS
TTGAGAATAGAGCAAAAGAG+AGG 0.672190 5_2:-3154416 Msa0749610:CDS
CGTCAAATATCTTATGTACG+CGG 0.681567 5_2:-3154129 Msa0749610:CDS
GCAGGTCCTCCATAAGACAT+CGG 0.688092 5_2:+3155296 None:intergenic
AGCATTGTTAGAGAATGACC+AGG 0.689841 5_2:-3154523 Msa0749610:intron
GGTTCATCTGATGATGACAA+TGG 0.730250 5_2:-3155353 Msa0749610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAACAAATTCAAAATT+AGG + chr5_2:3153100-3153119 None:intergenic 10.0%
!!! TTTTTTTTTTAATGTAATCA+AGG + chr5_2:3154137-3154156 None:intergenic 10.0%
!! TATATATTAAGAAATGCAAT+GGG + chr5_2:3153013-3153032 None:intergenic 15.0%
!! ATATATATTAAGAAATGCAA+TGG + chr5_2:3153014-3153033 None:intergenic 15.0%
!!! CATTTTTTATTTTCATACAA+TGG - chr5_2:3154207-3154226 Msa0749610:intron 15.0%
!! TTTCATAATATTAATTCACA+CGG - chr5_2:3154505-3154524 Msa0749610:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr5_2:3155224-3155243 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + chr5_2:3155288-3155307 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr5_2:3155289-3155308 None:intergenic 15.0%
!!! CATGATTCTTTAATTATTTT+TGG - chr5_2:3155480-3155499 Msa0749610:CDS 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr5_2:3155671-3155690 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr5_2:3155670-3155689 Msa0749610:CDS 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr5_2:3155694-3155713 Msa0749610:CDS 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr5_2:3155797-3155816 Msa0749610:CDS 15.0%
!! AATTATCTATTGTATTTGCA+GGG - chr5_2:3152722-3152741 Msa0749610:three_prime_UTR 20.0%
!! ATATATTAAGAAATGCAATG+GGG + chr5_2:3153012-3153031 None:intergenic 20.0%
!! AAACAAATTCAAAATTAGGA+CGG + chr5_2:3153096-3153115 None:intergenic 20.0%
!!! TTTTATTCAGTCGAATTATA+TGG - chr5_2:3153113-3153132 Msa0749610:intron 20.0%
!! TTATGGCAATGTAAATATAT+AGG - chr5_2:3153548-3153567 Msa0749610:intron 20.0%
!! AAAATGAAAACCAAACATAA+AGG - chr5_2:3154094-3154113 Msa0749610:CDS 20.0%
!! CCAACAATATAATAAGAAAA+AGG + chr5_2:3154303-3154322 None:intergenic 20.0%
!!! CCTTTTTCTTATTATATTGT+TGG - chr5_2:3154300-3154319 Msa0749610:CDS 20.0%
!! ATAAGCTGTAATTAACTTAT+AGG - chr5_2:3154345-3154364 Msa0749610:CDS 20.0%
!! GTATTCTAATTCAGATAAAA+GGG + chr5_2:3154648-3154667 None:intergenic 20.0%
!! AGTATTCTAATTCAGATAAA+AGG + chr5_2:3154649-3154668 None:intergenic 20.0%
!! AAAATAAATGTTACCTTTCT+TGG + chr5_2:3154754-3154773 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr5_2:3155154-3155173 None:intergenic 20.0%
!!! TGAAATGAATCAGTTATTTT+GGG + chr5_2:3155176-3155195 None:intergenic 20.0%
!!! TTGAAATGAATCAGTTATTT+TGG + chr5_2:3155177-3155196 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + chr5_2:3155287-3155306 None:intergenic 20.0%
!!! TTATTTTATTGTTATTGTGC+AGG - chr5_2:3155420-3155439 Msa0749610:CDS 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr5_2:3155680-3155699 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr5_2:3155757-3155776 Msa0749610:CDS 20.0%
! CTGCAAATACAATAGATAAT+TGG + chr5_2:3152723-3152742 None:intergenic 25.0%
! CAATTATCTATTGTATTTGC+AGG - chr5_2:3152721-3152740 Msa0749610:three_prime_UTR 25.0%
! TATATTAAGAAATGCAATGG+GGG + chr5_2:3153011-3153030 None:intergenic 25.0%
! GTGTATATTCACATTATTAC+TGG - chr5_2:3153291-3153310 Msa0749610:intron 25.0%
! CTTAACCATACATAAGTATT+AGG - chr5_2:3153482-3153501 Msa0749610:intron 25.0%
! AAGTTCCTAATACTTATGTA+TGG + chr5_2:3153490-3153509 None:intergenic 25.0%
! TTAGGAACTTAGCAATAAAA+AGG - chr5_2:3153500-3153519 Msa0749610:intron 25.0%
!! TACTTTTCTTCAATTTTCCA+TGG + chr5_2:3153693-3153712 None:intergenic 25.0%
! TAGTTACGTACTTACATTAA+AGG - chr5_2:3153917-3153936 Msa0749610:intron 25.0%
! TTAGATTAATCGAGCATTAA+AGG + chr5_2:3153974-3153993 None:intergenic 25.0%
! AAAAAAAAAAATGATGCAGC+TGG - chr5_2:3154148-3154167 Msa0749610:CDS 25.0%
! TAGTAAAATATAGTGCACTA+AGG + chr5_2:3154242-3154261 None:intergenic 25.0%
! TAACAAATTAGTACTGTCAT+TGG - chr5_2:3154441-3154460 Msa0749610:intron 25.0%
! TACTAACAGTACTCAATTAA+AGG + chr5_2:3154538-3154557 None:intergenic 25.0%
! TAGTAGACAATATAGAAAAG+AGG + chr5_2:3154818-3154837 None:intergenic 25.0%
! ATGATGATTATGATGTTTGA+TGG + chr5_2:3154927-3154946 None:intergenic 25.0%
!! AAGTTGAGTGTTTGTTAATA+GGG + chr5_2:3155004-3155023 None:intergenic 25.0%
!! AAAGTTGAGTGTTTGTTAAT+AGG + chr5_2:3155005-3155024 None:intergenic 25.0%
!!! AGAAGTATTTTTATAGTACC+TGG + chr5_2:3155074-3155093 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr5_2:3155155-3155174 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr5_2:3155265-3155284 None:intergenic 25.0%
! CTTATATCACTAGTAACTTA+TGG + chr5_2:3155373-3155392 None:intergenic 25.0%
! ACATTGTCAAAATCATCATA+TGG - chr5_2:3155534-3155553 Msa0749610:CDS 25.0%
! AATGATTAAGAGAAAGAGAA+TGG - chr5_2:3155637-3155656 Msa0749610:CDS 25.0%
TTGAATGCTGGTAATATCTT+AGG - chr5_2:3151852-3151871 Msa0749610:three_prime_UTR 30.0%
TGAATGCTGGTAATATCTTA+GGG - chr5_2:3151853-3151872 Msa0749610:three_prime_UTR 30.0%
AATACTTTAAACAGTCTTCC+CGG - chr5_2:3151921-3151940 Msa0749610:intron 30.0%
AGAATTCATCATTCTTCCAT+CGG - chr5_2:3152036-3152055 Msa0749610:intron 30.0%
ACTTTGATCCTAGTTTAAGA+TGG - chr5_2:3152180-3152199 Msa0749610:intron 30.0%
! CTTTGATCCTAGTTTAAGAT+GGG - chr5_2:3152181-3152200 Msa0749610:intron 30.0%
! TTTGATCCTAGTTTAAGATG+GGG - chr5_2:3152182-3152201 Msa0749610:intron 30.0%
!! AACATGAAAGTATCATGTGT+TGG - chr5_2:3152584-3152603 Msa0749610:intron 30.0%
AGGGAAAGTTAAACAAGAAA+AGG + chr5_2:3152675-3152694 None:intergenic 30.0%
TGGAGATTCTTAAAAAGACA+AGG - chr5_2:3152855-3152874 Msa0749610:three_prime_UTR 30.0%
TAAATTCTTACTCATGCTCA+GGG + chr5_2:3152928-3152947 None:intergenic 30.0%
CTATGTAAGAAATCTAGACA+AGG + chr5_2:3153045-3153064 None:intergenic 30.0%
TCTAGATTTCTTACATAGAG+TGG - chr5_2:3153047-3153066 Msa0749610:intron 30.0%
GGTTATAGAATAGGTCTAAA+AGG + chr5_2:3153240-3153259 None:intergenic 30.0%
TGTTTGTGTGGTTATAGAAT+AGG + chr5_2:3153249-3153268 None:intergenic 30.0%
ACATAAGTACTCATTCGTAT+TGG + chr5_2:3153273-3153292 None:intergenic 30.0%
TTGAGTACTTATATGTTGGA+GGG + chr5_2:3153382-3153401 None:intergenic 30.0%
TTGGTTGAGTACTTATATGT+TGG + chr5_2:3153386-3153405 None:intergenic 30.0%
TGCTGACATTTCATAACTTA+TGG - chr5_2:3153531-3153550 Msa0749610:intron 30.0%
!!! CTGAGCTAAATTTTTTCTGA+AGG - chr5_2:3153773-3153792 Msa0749610:intron 30.0%
!!! GCTAAATTTTTTCTGAAGGA+AGG - chr5_2:3153777-3153796 Msa0749610:intron 30.0%
!!! AAATTTTTTCTGAAGGAAGG+AGG - chr5_2:3153780-3153799 Msa0749610:intron 30.0%
GTCACAATTTCAAAATTGCA+GGG - chr5_2:3153862-3153881 Msa0749610:intron 30.0%
TAAAGGACTTCAATTCTCTA+CGG - chr5_2:3153934-3153953 Msa0749610:three_prime_UTR 30.0%
GCTTATTAACCTTGTACTTT+CGG + chr5_2:3154331-3154350 None:intergenic 30.0%
!! AACTATTTCTATTCAGCAAG+CGG - chr5_2:3154682-3154701 Msa0749610:intron 30.0%
TCTCTTTCATCAAACTTCAA+AGG + chr5_2:3154713-3154732 None:intergenic 30.0%
TGTTACCTTTCTTGGTATTT+GGG + chr5_2:3154746-3154765 None:intergenic 30.0%
ATGTTACCTTTCTTGGTATT+TGG + chr5_2:3154747-3154766 None:intergenic 30.0%
AATTATGAACAAAGTGAAGC+TGG + chr5_2:3154976-3154995 None:intergenic 30.0%
AATAATGATTGTGCAGGATA+TGG + chr5_2:3155049-3155068 None:intergenic 30.0%
AGAAAATGGGTCAGTTATTT+CGG + chr5_2:3155141-3155160 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr5_2:3155280-3155299 None:intergenic 30.0%
TTGTCAAAATCATCATATGG+AGG - chr5_2:3155537-3155556 Msa0749610:CDS 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr5_2:3155588-3155607 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr5_2:3155589-3155608 Msa0749610:CDS 30.0%
GAATGCTGGTAATATCTTAG+GGG - chr5_2:3151854-3151873 Msa0749610:three_prime_UTR 35.0%
!!! AATGAGAGCTAGCCATTTTT+TGG + chr5_2:3151898-3151917 None:intergenic 35.0%
! AAAAAATGGCTAGCTCTCAT+TGG - chr5_2:3151897-3151916 Msa0749610:intron 35.0%
!!! AGAATTGAATGCCGATTTTG+AGG - chr5_2:3151998-3152017 Msa0749610:intron 35.0%
!!! GAATTGAATGCCGATTTTGA+GGG - chr5_2:3151999-3152018 Msa0749610:intron 35.0%
CTATAACCCCATCTTAAACT+AGG + chr5_2:3152191-3152210 None:intergenic 35.0%
! CTAGTTTAAGATGGGGTTAT+AGG - chr5_2:3152189-3152208 Msa0749610:three_prime_UTR 35.0%
ACCGAGTGACTATTATTCAA+GGG - chr5_2:3152280-3152299 Msa0749610:three_prime_UTR 35.0%
ACCGAGTGACTATTATTCAA+GGG - chr5_2:3152280-3152299 Msa0749610:three_prime_UTR 35.0%
ACCAAGTGACTATTCAAGAT+GGG - chr5_2:3152358-3152377 Msa0749610:intron 35.0%
! TTGTTTTCACCGATGTCTTA+TGG - chr5_2:3152428-3152447 Msa0749610:intron 35.0%
CCATTTGTTTACTTGCAACA+AGG + chr5_2:3152511-3152530 None:intergenic 35.0%
CCTTGTTGCAAGTAAACAAA+TGG - chr5_2:3152508-3152527 Msa0749610:intron 35.0%
GTTGCAAGTAAACAAATGGT+TGG - chr5_2:3152512-3152531 Msa0749610:intron 35.0%
TTGGAATCTTTCTTACCGTT+TGG - chr5_2:3152531-3152550 Msa0749610:intron 35.0%
TGGAATCTTTCTTACCGTTT+GGG - chr5_2:3152532-3152551 Msa0749610:intron 35.0%
! AAAGTATCATGTGTTGGTAG+AGG - chr5_2:3152590-3152609 Msa0749610:intron 35.0%
!! GATGGGTTATCTTGGAAATA+AGG - chr5_2:3152616-3152635 Msa0749610:intron 35.0%
TGTCACGAACATTCTTCAAA+GGG + chr5_2:3152694-3152713 None:intergenic 35.0%
TTGTCACGAACATTCTTCAA+AGG + chr5_2:3152695-3152714 None:intergenic 35.0%
ATTTGTAGCCATTTAACCTC+AGG - chr5_2:3152791-3152810 Msa0749610:three_prime_UTR 35.0%
AAGAAGAAACTCTGATGTAC+TGG - chr5_2:3152835-3152854 Msa0749610:three_prime_UTR 35.0%
GTAAATTCTTACTCATGCTC+AGG + chr5_2:3152929-3152948 None:intergenic 35.0%
CATGAGTAAGAATTTACCAG+CGG - chr5_2:3152932-3152951 Msa0749610:intron 35.0%
TTCAGTCGAATTATATGGCT+TGG - chr5_2:3153118-3153137 Msa0749610:intron 35.0%
! ATAGGTCTAAAAGGTATACC+TGG + chr5_2:3153231-3153250 None:intergenic 35.0%
!! ATTCGTATTGGTTGTTTGTG+TGG + chr5_2:3153261-3153280 None:intergenic 35.0%
TTGAGAATAGAGCAAAAGAG+AGG - chr5_2:3153317-3153336 Msa0749610:intron 35.0%
GTTGAGTACTTATATGTTGG+AGG + chr5_2:3153383-3153402 None:intergenic 35.0%
AGTACTCAACCAATTCAGAT+AGG - chr5_2:3153393-3153412 Msa0749610:intron 35.0%
ATATGCATCCAAAGGAGAAA+AGG - chr5_2:3153429-3153448 Msa0749610:intron 35.0%
GGAACTTAGCAATAAAAAGG+AGG - chr5_2:3153503-3153522 Msa0749610:intron 35.0%
CGTCAAATATCTTATGTACG+CGG - chr5_2:3153604-3153623 Msa0749610:intron 35.0%
!! ACCGGTTTATGGCTTATTTT+GGG - chr5_2:3153651-3153670 Msa0749610:intron 35.0%
! GAACTTTTACCATATTCCCA+CGG - chr5_2:3153745-3153764 Msa0749610:intron 35.0%
ATAGAGAGCTTACTTGAACA+GGG + chr5_2:3153828-3153847 None:intergenic 35.0%
GGTCACAATTTCAAAATTGC+AGG - chr5_2:3153861-3153880 Msa0749610:intron 35.0%
!! TTCAAAATTGCAGGGCATTT+TGG - chr5_2:3153870-3153889 Msa0749610:intron 35.0%
TTAATCGAGCATTAAAGGTG+CGG + chr5_2:3153969-3153988 None:intergenic 35.0%
TTAATCCTACCGAACTTACA+AGG - chr5_2:3154023-3154042 Msa0749610:CDS 35.0%
TTTGCTCAGACCTTTATGTT+TGG + chr5_2:3154107-3154126 None:intergenic 35.0%
ATGATTAGCATTCTGACATC+AGG - chr5_2:3154475-3154494 Msa0749610:intron 35.0%
!! ACTATTTCTATTCAGCAAGC+GGG - chr5_2:3154683-3154702 Msa0749610:intron 35.0%
CATTTCCCAAATACCAAGAA+AGG - chr5_2:3154738-3154757 Msa0749610:intron 35.0%
!!! CTTACTTGCTTCTGCTTTTT+TGG - chr5_2:3154786-3154805 Msa0749610:intron 35.0%
CCTGAGATGAAAAAGAGAAA+AGG + chr5_2:3154853-3154872 None:intergenic 35.0%
!! CCTTTTCTCTTTTTCATCTC+AGG - chr5_2:3154850-3154869 Msa0749610:CDS 35.0%
! GAAAATGGGTCAGTTATTTC+GGG + chr5_2:3155140-3155159 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr5_2:3155310-3155329 Msa0749610:CDS 35.0%
CCAAAGTAGGTCAATTAAAC+CGG - chr5_2:3155323-3155342 Msa0749610:CDS 35.0%
CAAAGTAGGTCAATTAAACC+GGG - chr5_2:3155324-3155343 Msa0749610:CDS 35.0%
! TTATTGTTATTGTGCAGGAG+TGG - chr5_2:3155425-3155444 Msa0749610:CDS 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr5_2:3155787-3155806 Msa0749610:CDS 35.0%
ATCTTAGGGGCAGAAGATAA+TGG - chr5_2:3151867-3151886 Msa0749610:three_prime_UTR 40.0%
ATAATGGCCCTGCCAAAAAA+TGG - chr5_2:3151883-3151902 Msa0749610:three_prime_UTR 40.0%
! ATCGGGTAATTTTCGGTAAC+AGG - chr5_2:3152150-3152169 Msa0749610:intron 40.0%
ATAGGCCTAGTGACTATTCA+AGG - chr5_2:3152207-3152226 Msa0749610:three_prime_UTR 40.0%
TAGGCCTAGTGACTATTCAA+GGG - chr5_2:3152208-3152227 Msa0749610:three_prime_UTR 40.0%
GACCGAGTGACTATTATACA+AGG - chr5_2:3152243-3152262 Msa0749610:three_prime_UTR 40.0%
! GGCCTTGTATAATAGTCACT+CGG + chr5_2:3152248-3152267 None:intergenic 40.0%
GACCGAGTGACTATTATTCA+AGG - chr5_2:3152279-3152298 Msa0749610:three_prime_UTR 40.0%
GCCCTTGAATAATAGTCACT+CGG + chr5_2:3152284-3152303 None:intergenic 40.0%
GACCGAGTGACTATTATTCA+AGG - chr5_2:3152279-3152298 Msa0749610:three_prime_UTR 40.0%
GCCCTTGAATAATAGTCACT+CGG + chr5_2:3152284-3152303 None:intergenic 40.0%
GACCAAGTGACTATTCAAGA+TGG - chr5_2:3152357-3152376 Msa0749610:intron 40.0%
CCAAGTGACTATTCAAGATG+GGG - chr5_2:3152359-3152378 Msa0749610:intron 40.0%
! GGTTCATCTGATGATGACAA+TGG - chr5_2:3152380-3152399 Msa0749610:intron 40.0%
GGTGAAAACAAGACTGTACT+CGG + chr5_2:3152419-3152438 None:intergenic 40.0%
! TTTTCACCGATGTCTTATGG+AGG - chr5_2:3152431-3152450 Msa0749610:intron 40.0%
! ATGTGTTGGTAGAGGATTGA+TGG - chr5_2:3152598-3152617 Msa0749610:intron 40.0%
! TGTGTTGGTAGAGGATTGAT+GGG - chr5_2:3152599-3152618 Msa0749610:intron 40.0%
!! AGAGGATTGATGGGTTATCT+TGG - chr5_2:3152608-3152627 Msa0749610:intron 40.0%
CAGAGACATGCTAATTGAGA+TGG + chr5_2:3152750-3152769 None:intergenic 40.0%
CTTTCTGTCCTGAGGTTAAA+TGG + chr5_2:3152802-3152821 None:intergenic 40.0%
TTAACCTCAGGACAGAAAGA+AGG - chr5_2:3152803-3152822 Msa0749610:three_prime_UTR 40.0%
!! GACATTTTAATGTATGCCGC+TGG + chr5_2:3152951-3152970 None:intergenic 40.0%
CGCTTATTGAGATGCAAAAC+TGG - chr5_2:3153185-3153204 Msa0749610:intron 40.0%
AGCATTGTTAGAGAATGACC+AGG - chr5_2:3153210-3153229 Msa0749610:intron 40.0%
CATTTGCAGGATGGAAAGAA+GGG - chr5_2:3153345-3153364 Msa0749610:intron 40.0%
ACCAATTCAGATAGGTATGC+TGG - chr5_2:3153401-3153420 Msa0749610:intron 40.0%
TCCAGCATACCTATCTGAAT+TGG + chr5_2:3153405-3153424 None:intergenic 40.0%
TGGAGATGATATGCATCCAA+AGG - chr5_2:3153421-3153440 Msa0749610:intron 40.0%
! ATAGGTGTGACCGTATTTTG+TGG - chr5_2:3153566-3153585 Msa0749610:intron 40.0%
CTTCTCCATGCCACAAAATA+CGG + chr5_2:3153579-3153598 None:intergenic 40.0%
! AAGATTTTCAGACCACAGAC+CGG - chr5_2:3153633-3153652 Msa0749610:intron 40.0%
!! GACCGGTTTATGGCTTATTT+TGG - chr5_2:3153650-3153669 Msa0749610:intron 40.0%
GCCCAAAATAAGCCATAAAC+CGG + chr5_2:3153655-3153674 None:intergenic 40.0%
ATGGTAAAAGTTCCTCCACT+TGG + chr5_2:3153738-3153757 None:intergenic 40.0%
! ATTTAGCTCAGTGTATCCGT+GGG + chr5_2:3153764-3153783 None:intergenic 40.0%
! AATTTAGCTCAGTGTATCCG+TGG + chr5_2:3153765-3153784 None:intergenic 40.0%
GATAGAGAGCTTACTTGAAC+AGG + chr5_2:3153829-3153848 None:intergenic 40.0%
TAAGCTCTCTATCCTATTCG+CGG - chr5_2:3153836-3153855 Msa0749610:intron 40.0%
TTAACCTTGTACTTTCGGTC+TGG + chr5_2:3154326-3154345 None:intergenic 40.0%
! ACTGATCATGTGTTGCTGTT+GGG + chr5_2:3154899-3154918 None:intergenic 40.0%
! TACTGATCATGTGTTGCTGT+TGG + chr5_2:3154900-3154919 None:intergenic 40.0%
TGATTGTGCAGGATATGGTA+TGG + chr5_2:3155044-3155063 None:intergenic 40.0%
CTGGCTAATAATGATTGTGC+AGG + chr5_2:3155055-3155074 None:intergenic 40.0%
CTGCACAATCATTATTAGCC+AGG - chr5_2:3155053-3155072 Msa0749610:intron 40.0%
CCGGTTTAATTGACCTACTT+TGG + chr5_2:3155326-3155345 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr5_2:3155827-3155846 None:intergenic 40.0%
! GTAGTGTGCAGAGTGTTAAT+TGG - chr5_2:3155719-3155738 Msa0749610:CDS 40.0%
! TGTGCAGAGTGTTAATTGGA+GGG - chr5_2:3155723-3155742 Msa0749610:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr5_2:3155827-3155846 Msa0749610:CDS 40.0%
!!! GAGCTAGCCATTTTTTGGCA+GGG + chr5_2:3151893-3151912 None:intergenic 45.0%
!!! AGAGCTAGCCATTTTTTGGC+AGG + chr5_2:3151894-3151913 None:intergenic 45.0%
TCCATTACCTCCACTAGTAC+CGG + chr5_2:3151943-3151962 None:intergenic 45.0%
! TTCAATTCTACCACTGGCTG+AGG + chr5_2:3151987-3152006 None:intergenic 45.0%
TCGGCATTCAATTCTACCAC+TGG + chr5_2:3151993-3152012 None:intergenic 45.0%
CCTAGCTGATCCCTCAAAAT+CGG + chr5_2:3152012-3152031 None:intergenic 45.0%
GCTGCTAGAAGTTGTTTGGA+AGG + chr5_2:3152066-3152085 None:intergenic 45.0%
TCCAAACAACTTCTAGCAGC+TGG - chr5_2:3152066-3152085 Msa0749610:intron 45.0%
CCAAACAACTTCTAGCAGCT+GGG - chr5_2:3152067-3152086 Msa0749610:intron 45.0%
CAAACAACTTCTAGCAGCTG+GGG - chr5_2:3152068-3152087 Msa0749610:intron 45.0%
! GTCTGCGATCGGGTAATTTT+CGG - chr5_2:3152143-3152162 Msa0749610:intron 45.0%
CTTGCCCTTGAATAGTCACT+AGG + chr5_2:3152215-3152234 None:intergenic 45.0%
CCCCATCTTGAATAGTCACT+TGG + chr5_2:3152362-3152381 None:intergenic 45.0%
CTGTACTCGGAGAATCTTCA+AGG + chr5_2:3152406-3152425 None:intergenic 45.0%
TTTCTTACCGTTTGGGTGAG+AGG - chr5_2:3152539-3152558 Msa0749610:intron 45.0%
CAATTCACCTCTCACCCAAA+CGG + chr5_2:3152549-3152568 None:intergenic 45.0%
TTGGGTGAGAGGTGAATTGA+AGG - chr5_2:3152550-3152569 Msa0749610:intron 45.0%
ATCACCTTCTTTCTGTCCTG+AGG + chr5_2:3152810-3152829 None:intergenic 45.0%
ACAAGGTTTCCACGTGTTCA+TGG - chr5_2:3152872-3152891 Msa0749610:intron 45.0%
GCATTTGCAGGATGGAAAGA+AGG - chr5_2:3153344-3153363 Msa0749610:intron 45.0%
GAGTGATGATCTTACCAAGC+AGG + chr5_2:3153461-3153480 None:intergenic 45.0%
! TGTGACCGTATTTTGTGGCA+TGG - chr5_2:3153571-3153590 Msa0749610:intron 45.0%
! CGTATTTTGTGGCATGGAGA+AGG - chr5_2:3153577-3153596 Msa0749610:intron 45.0%
ATAAGCCATAAACCGGTCTG+TGG + chr5_2:3153648-3153667 None:intergenic 45.0%
!!! TTATGGCTTATTTTGGGCCG+AGG - chr5_2:3153657-3153676 Msa0749610:intron 45.0%
TCCATGGTTTGACTCAACCT+CGG + chr5_2:3153677-3153696 None:intergenic 45.0%
TTCTCGTTCCAGAATCCAAG+TGG - chr5_2:3153720-3153739 Msa0749610:intron 45.0%
AAGTTCCTCCACTTGGATTC+TGG + chr5_2:3153731-3153750 None:intergenic 45.0%
TCAGTGTATCCGTGGGAATA+TGG + chr5_2:3153757-3153776 None:intergenic 45.0%
AATTGTGACCATCCGCGAAT+AGG + chr5_2:3153851-3153870 None:intergenic 45.0%
! ATCCCTTTGGGAGAGAGAAT+GGG + chr5_2:3154271-3154290 None:intergenic 45.0%
! ATGGGTCAGTTATTTCGGGA+CGG + chr5_2:3155136-3155155 None:intergenic 45.0%
GTAGGTCAATTAAACCGGGA+CGG - chr5_2:3155328-3155347 Msa0749610:CDS 45.0%
AAATACTACTACCTCCGTCC+CGG + chr5_2:3155345-3155364 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr5_2:3155826-3155845 None:intergenic 45.0%
! GTGTGCAGAGTGTTAATTGG+AGG - chr5_2:3155722-3155741 Msa0749610:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr5_2:3155826-3155845 Msa0749610:CDS 45.0%
AACAGTCTTCCCGGTACTAG+TGG - chr5_2:3151930-3151949 Msa0749610:intron 50.0%
CCATTACCTCCACTAGTACC+GGG + chr5_2:3151942-3151961 None:intergenic 50.0%
ACTGGCTGAGGTATAGGAGA+AGG + chr5_2:3151975-3151994 None:intergenic 50.0%
TTCTCCTATACCTCAGCCAG+TGG - chr5_2:3151974-3151993 Msa0749610:intron 50.0%
! TCTACCACTGGCTGAGGTAT+AGG + chr5_2:3151981-3152000 None:intergenic 50.0%
!! CCGATTTTGAGGGATCAGCT+AGG - chr5_2:3152009-3152028 Msa0749610:intron 50.0%
TTGTTTGGAAGGATCGCCGA+TGG + chr5_2:3152055-3152074 None:intergenic 50.0%
CCCAGCTGCTAGAAGTTGTT+TGG + chr5_2:3152070-3152089 None:intergenic 50.0%
AACTTCTAGCAGCTGGGGAA+TGG - chr5_2:3152073-3152092 Msa0749610:intron 50.0%
CTGAATCTTCGGTCTAGTCG+TGG + chr5_2:3152122-3152141 None:intergenic 50.0%
GATCGCAGACGCTGAATCTT+CGG + chr5_2:3152133-3152152 None:intergenic 50.0%
GAAGATTCAGCGTCTGCGAT+CGG - chr5_2:3152132-3152151 Msa0749610:intron 50.0%
AAGATTCAGCGTCTGCGATC+GGG - chr5_2:3152133-3152152 Msa0749610:intron 50.0%
GCAGGTCCTCCATAAGACAT+CGG + chr5_2:3152440-3152459 None:intergenic 50.0%
TTATGGAGGACCTGCTGCAT+CGG - chr5_2:3152445-3152464 Msa0749610:intron 50.0%
GAAGATGGATACAGCATGCC+AGG - chr5_2:3152470-3152489 Msa0749610:intron 50.0%
CTGTCAGAACCATGAACACG+TGG + chr5_2:3152884-3152903 None:intergenic 50.0%
TTCTGACAGTGCGAAGTCTC+CGG - chr5_2:3152895-3152914 Msa0749610:intron 50.0%
TCATGCTCAGGGATTGTCTC+CGG + chr5_2:3152917-3152936 None:intergenic 50.0%
CTTCGCAGAACGGTAGTTGA+GGG + chr5_2:3153164-3153183 None:intergenic 50.0%
CAATAAGCGCCTTCGCAGAA+CGG + chr5_2:3153174-3153193 None:intergenic 50.0%
AAGAGAGGTCGTGCATTTGC+AGG - chr5_2:3153332-3153351 Msa0749610:intron 50.0%
! GGTGTTCGCCTTTTCTCCTT+TGG + chr5_2:3153440-3153459 None:intergenic 50.0%
AGAAAAGGCGAACACCTGCT+TGG - chr5_2:3153444-3153463 Msa0749610:intron 50.0%
! TCAGACCACAGACCGGTTTA+TGG - chr5_2:3153640-3153659 Msa0749610:intron 50.0%
TCGTTCCAGAATCCAAGTGG+AGG - chr5_2:3153723-3153742 Msa0749610:intron 50.0%
CTCTCTATCCTATTCGCGGA+TGG - chr5_2:3153840-3153859 Msa0749610:intron 50.0%
! TCGAGCATTAAAGGTGCGGT+TGG + chr5_2:3153965-3153984 None:intergenic 50.0%
CCTACCGAACTTACAAGGAG+CGG - chr5_2:3154028-3154047 Msa0749610:CDS 50.0%
CCAACCGCTCCTTGTAAGTT+CGG + chr5_2:3154035-3154054 None:intergenic 50.0%
CGAACTTACAAGGAGCGGTT+GGG - chr5_2:3154033-3154052 Msa0749610:CDS 50.0%
GAACTTACAAGGAGCGGTTG+GGG - chr5_2:3154034-3154053 Msa0749610:CDS 50.0%
ATGCCCATTCTCTCTCCCAA+AGG - chr5_2:3154265-3154284 Msa0749610:intron 50.0%
TGCCCATTCTCTCTCCCAAA+GGG - chr5_2:3154266-3154285 Msa0749610:intron 50.0%
! CATCCCTTTGGGAGAGAGAA+TGG + chr5_2:3154272-3154291 None:intergenic 50.0%
AGGCAGCAAGACATCCCTTT+GGG + chr5_2:3154283-3154302 None:intergenic 50.0%
AAGGCAGCAAGACATCCCTT+TGG + chr5_2:3154284-3154303 None:intergenic 50.0%
! TTGGCCAGACCGAAAGTACA+AGG - chr5_2:3154319-3154338 Msa0749610:CDS 50.0%
! GTCAGTTATTTCGGGACGGA+GGG + chr5_2:3155132-3155151 None:intergenic 50.0%
AGTCTTCCCGGTACTAGTGG+AGG - chr5_2:3151933-3151952 Msa0749610:intron 55.0%
CCCGGTACTAGTGGAGGTAA+TGG - chr5_2:3151939-3151958 Msa0749610:intron 55.0%
AGTCGTGGTTGCACGGTTGA+AGG + chr5_2:3152107-3152126 None:intergenic 55.0%
TCGGTCTAGTCGTGGTTGCA+CGG + chr5_2:3152114-3152133 None:intergenic 55.0%
TCACTCGGTCGAGAGTCACT+TGG + chr5_2:3152233-3152252 None:intergenic 55.0%
TATGGAGGACCTGCTGCATC+GGG - chr5_2:3152446-3152465 Msa0749610:intron 55.0%
CCTTCGCAGAACGGTAGTTG+AGG + chr5_2:3153165-3153184 None:intergenic 55.0%
CCTCAACTACCGTTCTGCGA+AGG - chr5_2:3153162-3153181 Msa0749610:intron 55.0%
GAGGTCGTGCATTTGCAGGA+TGG - chr5_2:3153336-3153355 Msa0749610:intron 55.0%
GCCGAGGTTGAGTCAAACCA+TGG - chr5_2:3153673-3153692 Msa0749610:intron 55.0%
CCGCTCCTTGTAAGTTCGGT+AGG + chr5_2:3154031-3154050 None:intergenic 55.0%
CCGAACTTACAAGGAGCGGT+TGG - chr5_2:3154032-3154051 Msa0749610:CDS 55.0%
! GGTCAGTTATTTCGGGACGG+AGG + chr5_2:3155133-3155152 None:intergenic 55.0%
GGTCAATTAAACCGGGACGG+AGG - chr5_2:3155331-3155350 Msa0749610:CDS 55.0%
CCATCTTCACCCGATGCAGC+AGG + chr5_2:3152458-3152477 None:intergenic 60.0%
CCTGCTGCATCGGGTGAAGA+TGG - chr5_2:3152455-3152474 Msa0749610:intron 60.0%
ACAGCATGCCAGGACGCTCA+AGG - chr5_2:3152480-3152499 Msa0749610:intron 60.0%
AGGCTGTACCTTGAGCGTCC+TGG + chr5_2:3152491-3152510 None:intergenic 60.0%
CTTACAAGGAGCGGTTGGGG+AGG - chr5_2:3154037-3154056 Msa0749610:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3151852 3155903 3151852 ID=Msa0749610;Name=Msa0749610
chr5_2 mRNA 3151852 3155903 3151852 ID=Msa0749610-mRNA-1;Parent=Msa0749610;Name=Msa0749610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.88|1|0.5|0.55|9|494|486
chr5_2 exon 3151852 3151907 3151852 ID=Msa0749610-mRNA-1:exon:1088;Parent=Msa0749610-mRNA-1
chr5_2 exon 3152183 3152313 3152183 ID=Msa0749610-mRNA-1:exon:1087;Parent=Msa0749610-mRNA-1
chr5_2 exon 3152681 3152883 3152681 ID=Msa0749610-mRNA-1:exon:1086;Parent=Msa0749610-mRNA-1
chr5_2 exon 3152996 3153057 3152996 ID=Msa0749610-mRNA-1:exon:1085;Parent=Msa0749610-mRNA-1
chr5_2 exon 3153921 3154185 3153921 ID=Msa0749610-mRNA-1:exon:1084;Parent=Msa0749610-mRNA-1
chr5_2 exon 3154290 3154438 3154290 ID=Msa0749610-mRNA-1:exon:1083;Parent=Msa0749610-mRNA-1
chr5_2 exon 3154524 3154632 3154524 ID=Msa0749610-mRNA-1:exon:1082;Parent=Msa0749610-mRNA-1
chr5_2 exon 3154819 3155012 3154819 ID=Msa0749610-mRNA-1:exon:1081;Parent=Msa0749610-mRNA-1
chr5_2 exon 3155118 3155903 3155118 ID=Msa0749610-mRNA-1:exon:1080;Parent=Msa0749610-mRNA-1
chr5_2 CDS 3155118 3155903 3155118 ID=Msa0749610-mRNA-1:cds;Parent=Msa0749610-mRNA-1
chr5_2 CDS 3154819 3155012 3154819 ID=Msa0749610-mRNA-1:cds;Parent=Msa0749610-mRNA-1
chr5_2 CDS 3154524 3154632 3154524 ID=Msa0749610-mRNA-1:cds;Parent=Msa0749610-mRNA-1
chr5_2 CDS 3154290 3154438 3154290 ID=Msa0749610-mRNA-1:cds;Parent=Msa0749610-mRNA-1
chr5_2 CDS 3153963 3154185 3153963 ID=Msa0749610-mRNA-1:cds;Parent=Msa0749610-mRNA-1
chr5_2 three_prime_UTR 3153921 3153962 3153921 ID=Msa0749610-mRNA-1:three_prime_utr;Parent=Msa0749610-mRNA-1
chr5_2 three_prime_UTR 3152996 3153057 3152996 ID=Msa0749610-mRNA-1:three_prime_utr;Parent=Msa0749610-mRNA-1
chr5_2 three_prime_UTR 3152681 3152883 3152681 ID=Msa0749610-mRNA-1:three_prime_utr;Parent=Msa0749610-mRNA-1
chr5_2 three_prime_UTR 3152183 3152313 3152183 ID=Msa0749610-mRNA-1:three_prime_utr;Parent=Msa0749610-mRNA-1
chr5_2 three_prime_UTR 3151852 3151907 3151852 ID=Msa0749610-mRNA-1:three_prime_utr;Parent=Msa0749610-mRNA-1
Gene Sequence

>Msa0749610

TTGAATGCTGGTAATATCTTAGGGGCAGAAGATAATGGCCCTGCCAAAAAATGGCTAGCTCTCATTGGAAATACTTTAAACAGTCTTCCCGGTACTAGTGGAGGTAATGGATACTATACGCCTTCTCCTATACCTCAGCCAGTGGTAGAATTGAATGCCGATTTTGAGGGATCAGCTAGGCAGAAGAATTCATCATTCTTCCATCGGCGATCCTTCCAAACAACTTCTAGCAGCTGGGGAATGGACAATGATCCTTCAACCGTGCAACCACGACTAGACCGAAGATTCAGCGTCTGCGATCGGGTAATTTTCGGTAACAGGAAAAGTGACTTTGATCCTAGTTTAAGATGGGGTTATAGGCCTAGTGACTATTCAAGGGCAAGTGACTCTCGACCGAGTGACTATTATACAAGGCCAAGTGACTCTCGACCGAGTGACTATTATTCAAGGGCAAGTGACTACTCTCGACCGAGTGACTATTATTCAAGGGCAAGCGACTACTCTCGACCAAGTGACTATTCAAGATGGGGTTCATCTGATGATGACAATGGCCTTGAAGATTCTCCGAGTACAGTCTTGTTTTCACCGATGTCTTATGGAGGACCTGCTGCATCGGGTGAAGATGGATACAGCATGCCAGGACGCTCAAGGTACAGCCTTGTTGCAAGTAAACAAATGGTTGGAATCTTTCTTACCGTTTGGGTGAGAGGTGAATTGAAGGATCATGTTAAAAACATGAAAGTATCATGTGTTGGTAGAGGATTGATGGGTTATCTTGGAAATAAGGGATCCATCTCAATTAGCATGTCTCTGCATGAAACAAGCTTCTGCTTTATTTGTAGCCATTTAACCTCAGGACAGAAAGAAGGTGATGAACTAAGAAGAAACTCTGATGTACTGGAGATTCTTAAAAAGACAAGGTTTCCACGTGTTCATGGTTCTGACAGTGCGAAGTCTCCGGAGACAATCCCTGAGCATGATCGAATTATATGGCTTGGAGATTTAAATTATCGAATAGCCCTCAACTACCGTTCTGCGAAGGCGCTTATTGAGATGCAAAACTGGAGAGCATTGTTAGAGAATGACCAGTTGAGAATAGAGCAAAAGAGAGGTCGTGCATTTGCAGGATGGAAAGAAGGGAAGATTTATTTCCCTCCAACATATAAGTACTCAACCAATTCAGATAGGTATGCTGGAGATGATATGCATCCAAAGGAGAAAAGGCGAACACCTGCTTGGTGTGACCGTATTTTGTGGCATGGAGAAGGTCTACGTCAAATATCTTATGTACGCGGAGAATCAAGATTTTCAGACCACAGACCGGTTTATGGCTTATTTTGGGCCGAGGTTGAGTCAAACCATGGAAAATTGAAGAAAAGTATGAGCTGTTCTCGTTCCAGAATCCAAGTGGAGGAACTTTTACCATATTCCCACGGATACACTGAGCTAAATTTTTTCTGA
Protein sequence

>Msa0749610

LNAGNILGAEDNGPAKKWLALIGNTLNSLPGTSGGNGYYTPSPIPQPVVELNADFEGSARQKNSSFFHRRSFQTTSSSWGMDNDPSTVQPRLDRRFSVCDRVIFGNRKSDFDPSLRWGYRPSDYSRASDSRPSDYYTRPSDSRPSDYYSRASDYSRPSDYYSRASDYSRPSDYSRWGSSDDDNGLEDSPSTVLFSPMSYGGPAASGEDGYSMPGRSRYSLVASKQMVGIFLTVWVRGELKDHVKNMKVSCVGRGLMGYLGNKGSISISMSLHETSFCFICSHLTSGQKEGDELRRNSDVLEILKKTRFPRVHGSDSAKSPETIPEHDRIIWLGDLNYRIALNYRSAKALIEMQNWRALLENDQLRIEQKRGRAFAGWKEGKIYFPPTYKYSTNSDRYAGDDMHPKEKRRTPAWCDRILWHGEGLRQISYVRGESRFSDHRPVYGLFWAEVESNHGKLKKSMSCSRSRIQVEELLPYSHGYTELNFF*