AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0831380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831380 MtrunA17_Chr5g0394901 99.196 622 5 0 1 622 1 622 0.0 1274
Msa0831380 MtrunA17_Chr1g0205121 81.994 622 73 2 1 622 1 583 0.0 1045
Msa0831380 MtrunA17_Chr7g0260081 58.871 620 182 12 1 616 1 551 0.0 678
Msa0831380 MtrunA17_Chr1g0185281 73.333 315 78 4 311 622 248 559 4.39e-158 465
Msa0831380 MtrunA17_Chr1g0185281 60.392 255 95 3 1 254 1 250 1.98e-95 303
Msa0831380 MtrunA17_Chr4g0054941 36.304 606 313 12 7 597 4 551 8.56e-120 367
Msa0831380 MtrunA17_Chr4g0054951 35.942 626 323 14 1 610 1 564 7.22e-119 365
Msa0831380 MtrunA17_Chr8g0382571 59.259 270 108 1 349 616 208 477 1.38e-113 348
Msa0831380 MtrunA17_Chr8g0382571 58.667 75 31 0 90 164 35 109 1.08e-22 101
Msa0831380 MtrunA17_Chr7g0263111 61.660 253 88 1 351 603 168 411 3.30e-106 328
Msa0831380 MtrunA17_Chr7g0263111 42.236 161 85 5 6 164 5 159 6.11e-27 114
Msa0831380 MtrunA17_Chr8g0355021 56.981 265 111 2 353 616 226 488 1.47e-105 328
Msa0831380 MtrunA17_Chr8g0355021 41.985 131 57 3 50 163 3 131 2.02e-22 100
Msa0831380 MtrunA17_Chr1g0201271 34.264 645 347 17 7 609 12 621 1.29e-93 301
Msa0831380 MtrunA17_Chr6g0466801 56.322 261 107 4 351 610 366 620 2.57e-93 300
Msa0831380 MtrunA17_Chr6g0466801 42.991 107 61 0 75 181 79 185 4.22e-21 97.8
Msa0831380 MtrunA17_Chr5g0400311 51.880 266 124 2 351 615 364 626 9.08e-89 288
Msa0831380 MtrunA17_Chr5g0400311 33.495 206 99 5 1 180 1 194 2.49e-25 110
Msa0831380 MtrunA17_Chr6g0479511 52.340 235 108 2 354 587 152 383 8.89e-85 270
Msa0831380 MtrunA17_Chr6g0479511 48.039 102 47 2 69 164 16 117 1.42e-20 94.4
Msa0831380 MtrunA17_Chr1g0165011 54.008 237 103 2 354 587 177 410 1.13e-83 270
Msa0831380 MtrunA17_Chr1g0165011 53.333 75 34 1 90 163 60 134 4.44e-17 84.3
Msa0831380 MtrunA17_Chr8g0375751 50.195 257 122 3 354 607 146 399 9.36e-80 258
Msa0831380 MtrunA17_Chr8g0375751 51.852 81 36 2 84 163 52 130 5.59e-18 86.7
Msa0831380 MtrunA17_Chr6g0452181 51.240 242 112 4 351 587 160 400 6.23e-78 254
Msa0831380 MtrunA17_Chr6g0452181 55.128 78 33 1 89 164 51 128 1.82e-18 88.6
Msa0831380 MtrunA17_Chr1g0189231 32.287 223 128 4 352 555 606 824 4.13e-30 126
Msa0831380 MtrunA17_Chr6g0488541 25.094 267 142 6 345 555 634 898 1.62e-21 99.8
Msa0831380 MtrunA17_Chr1g0154491 33.918 171 96 7 390 558 143 298 7.13e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831380 AT1G05470.2 72.871 634 143 11 1 622 1 617 0.0 896
Msa0831380 AT1G05470.1 72.871 634 143 11 1 622 1 617 0.0 896
Msa0831380 AT2G32010.2 71.840 625 142 9 1 622 1 594 0.0 868
Msa0831380 AT2G32010.1 71.840 625 142 9 1 622 1 594 0.0 868
Msa0831380 AT2G32010.4 71.840 625 142 9 1 622 1 594 0.0 868
Msa0831380 AT2G32010.3 71.840 625 142 9 1 622 1 594 0.0 868
Msa0831380 AT3G63240.2 56.501 623 190 12 1 620 1 545 0.0 655
Msa0831380 AT3G63240.1 56.501 623 190 12 1 620 1 545 0.0 655
Msa0831380 AT5G65090.2 57.721 272 112 1 348 616 193 464 1.28e-114 350
Msa0831380 AT5G65090.2 52.703 74 35 0 90 163 6 79 8.09e-20 93.2
Msa0831380 AT5G65090.3 57.721 272 112 1 348 616 256 527 1.04e-113 350
Msa0831380 AT5G65090.3 52.703 74 35 0 90 163 69 142 1.34e-19 93.2
Msa0831380 AT5G65090.1 57.721 272 112 1 348 616 256 527 1.04e-113 350
Msa0831380 AT5G65090.1 52.703 74 35 0 90 163 69 142 1.34e-19 93.2
Msa0831380 AT5G04980.4 63.900 241 86 1 353 592 156 396 2.45e-109 335
Msa0831380 AT5G04980.1 63.900 241 86 1 353 592 191 431 1.59e-108 334
Msa0831380 AT5G04980.1 57.353 68 29 0 91 158 6 73 5.13e-19 90.5
Msa0831380 AT5G04980.3 63.900 241 86 1 353 592 191 431 1.59e-108 334
Msa0831380 AT5G04980.3 57.353 68 29 0 91 158 6 73 5.13e-19 90.5
Msa0831380 AT5G04980.2 63.900 241 86 1 353 592 220 460 2.16e-108 335
Msa0831380 AT5G04980.2 57.353 68 29 0 91 158 35 102 5.93e-19 90.5
Msa0831380 AT2G37440.2 57.857 280 94 5 347 610 107 378 8.13e-105 323
Msa0831380 AT2G37440.2 50.476 105 32 2 96 181 1 104 1.08e-21 98.2
Msa0831380 AT2G37440.1 57.857 280 94 5 347 610 188 459 7.16e-104 323
Msa0831380 AT2G37440.1 40.000 180 81 4 8 178 6 167 5.31e-27 115
Msa0831380 AT2G37440.3 57.857 280 94 5 347 610 188 459 7.16e-104 323
Msa0831380 AT2G37440.3 40.000 180 81 4 8 178 6 167 5.31e-27 115
Msa0831380 AT4G18010.1 51.698 265 124 2 334 597 369 630 2.72e-89 290
Msa0831380 AT4G18010.1 45.631 103 52 1 77 179 94 192 1.82e-21 99.4
Msa0831380 AT1G34120.5 49.802 253 123 3 354 605 182 431 8.87e-85 272
Msa0831380 AT2G01900.1 54.701 234 102 2 354 586 152 382 1.20e-84 271
Msa0831380 AT2G01900.1 51.389 72 34 1 93 163 57 128 1.71e-15 79.3
Msa0831380 AT2G01900.3 54.701 234 102 2 354 586 160 390 1.96e-84 271
Msa0831380 AT2G01900.3 51.389 72 34 1 93 163 65 136 1.72e-15 79.7
Msa0831380 AT1G71710.2 49.808 261 125 3 351 610 396 651 5.73e-84 276
Msa0831380 AT1G71710.2 37.438 203 101 5 1 177 1 203 8.37e-26 112
Msa0831380 AT1G71710.1 49.808 261 125 3 351 610 405 660 6.31e-84 276
Msa0831380 AT1G71710.1 37.438 203 101 5 1 177 10 212 9.07e-26 112
Msa0831380 AT1G34120.1 49.802 253 123 3 354 605 333 582 9.59e-83 271
Msa0831380 AT1G34120.1 37.126 167 73 3 10 165 27 172 6.34e-22 100
Msa0831380 AT1G34120.2 49.802 253 123 3 354 605 337 586 1.42e-82 271
Msa0831380 AT1G34120.2 37.126 167 77 3 10 165 27 176 5.29e-22 100
Msa0831380 AT1G34120.3 49.407 253 123 4 354 605 337 585 3.54e-80 265
Msa0831380 AT1G34120.3 37.126 167 77 3 10 165 27 176 5.37e-22 100
Msa0831380 AT2G01900.2 52.991 234 97 3 354 586 152 373 2.11e-79 257
Msa0831380 AT2G01900.2 51.389 72 34 1 93 163 57 128 1.64e-15 79.3
Msa0831380 AT4G18010.2 51.389 216 102 1 334 549 369 581 9.10e-71 239
Msa0831380 AT4G18010.2 45.631 103 52 1 77 179 94 192 1.50e-21 99.4
Msa0831380 AT1G34120.4 51.748 143 68 1 354 496 333 474 4.75e-45 167
Msa0831380 AT1G34120.4 37.576 165 71 3 10 163 27 170 4.37e-22 100
Msa0831380 AT2G43900.2 31.915 235 132 6 345 555 649 879 5.70e-31 130
Msa0831380 AT2G43900.1 31.915 235 132 6 345 555 649 879 6.66e-31 129
Msa0831380 AT1G65580.2 28.826 281 157 6 345 586 344 620 8.76e-30 125
Msa0831380 AT1G65580.1 28.826 281 157 6 345 586 610 886 1.52e-29 125
Msa0831380 AT1G05630.3 30.213 235 136 5 345 555 643 873 2.78e-29 124
Msa0831380 AT1G05630.2 30.213 235 136 5 345 555 643 873 3.19e-29 124
Msa0831380 AT2G31830.1 29.362 235 138 5 345 555 652 882 1.23e-27 119
Msa0831380 AT2G31830.2 29.362 235 138 5 345 555 652 882 1.26e-27 119
Msa0831380 AT2G31830.3 29.362 235 138 5 345 555 652 882 1.65e-27 119
Msa0831380 AT1G47510.4 35.025 197 101 10 390 578 84 261 4.31e-20 91.3
Msa0831380 AT1G47510.1 35.025 197 101 10 390 578 146 323 1.02e-19 91.3
Msa0831380 AT1G05630.1 39.815 108 60 3 449 555 804 907 9.33e-16 82.0
Msa0831380 AT1G47510.2 40.171 117 58 5 469 578 149 260 3.21e-13 70.9

Find 198 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTACCTTTCTTGGTATT+TGG 0.086381 5_4:+4382945 None:intergenic
AAAATAAATGTTACCTTTCT+TGG 0.140474 5_4:+4382938 None:intergenic
TATTAAATTCAACACTTTAA+AGG 0.140919 5_4:-4387488 Msa0831380:five_prime_UTR
GACCGGTTTATGGCTTATTT+TGG 0.166786 5_4:-4384271 Msa0831380:CDS
TTGAATGCTGGTAATATCTT+AGG 0.183150 5_4:-4386069 Msa0831380:CDS
AAAGTTGAGTGTTTGTTAAT+AGG 0.198761 5_4:+4382687 None:intergenic
CCTGCAGATATTTATGTTCT+TGG 0.212643 5_4:-4386439 Msa0831380:CDS
TCAGACCACAGACCGGTTTA+TGG 0.223819 5_4:-4384281 Msa0831380:CDS
ATCATTTATGCTCAAATTAC+TGG 0.225558 5_4:+4386480 None:intergenic
AAGTTCCTCCACTTGGATTC+TGG 0.230810 5_4:+4384193 None:intergenic
CTTTCTGTCCTGAGGTTAAA+TGG 0.244476 5_4:+4385122 None:intergenic
CTAGTTTAAGATGGGGTTAT+AGG 0.246789 5_4:-4385732 Msa0831380:CDS
GATGGGTTATCTTGGAAATA+AGG 0.249769 5_4:-4385305 Msa0831380:intron
AAGTTGAGTGTTTGTTAATA+GGG 0.261606 5_4:+4382688 None:intergenic
TGTTACCTTTCTTGGTATTT+GGG 0.274333 5_4:+4382946 None:intergenic
ATTAAATTCAACACTTTAAA+GGG 0.302092 5_4:-4387487 Msa0831380:five_prime_UTR
TAAAGTGTTGAATTTAATAA+TGG 0.302706 5_4:+4387492 None:intergenic
TTGGAATCTTTCTTACCGTT+TGG 0.325412 5_4:-4385390 Msa0831380:CDS
GTGTTTCAGTTTCTCTCTCT+TGG 0.329050 5_4:+4387585 None:intergenic
CCCAGCTGCTAGAAGTTGTT+TGG 0.335096 5_4:+4385854 None:intergenic
GCTCTCATGGTCAAAGAAAA+TGG 0.337468 5_4:-4387122 Msa0831380:CDS
AATAATGATTGTGCAGGATA+TGG 0.339706 5_4:+4382643 None:intergenic
TGGAATCTTTCTTACCGTTT+GGG 0.342146 5_4:-4385389 Msa0831380:CDS
ATTACTGGGCGGGGATCTTC+CGG 0.344283 5_4:+4386495 None:intergenic
CGCTTATTGAGATGCAAAAC+TGG 0.345003 5_4:-4384736 Msa0831380:CDS
GTAATTTGAGCATAAATGAT+TGG 0.367181 5_4:-4386477 Msa0831380:CDS
TCAGTGTATCCGTGGGAATA+TGG 0.367650 5_4:+4384167 None:intergenic
TTATGGACATCTATAATTCT+AGG 0.373586 5_4:+4386637 None:intergenic
ATGATGATTATGATGTTTGA+TGG 0.380475 5_4:+4382765 None:intergenic
ACAAGGTTTCCACGTGTTCA+TGG 0.384598 5_4:-4385049 Msa0831380:CDS
AAGAGAGGTCGTGCATTTGC+AGG 0.385658 5_4:-4384589 Msa0831380:CDS
TCTACCACTGGCTGAGGTAT+AGG 0.390446 5_4:+4385943 None:intergenic
TTCAGTCGAATTATATGGCT+TGG 0.390737 5_4:-4384803 Msa0831380:intron
CTGCAGATATTTATGTTCTT+GGG 0.393519 5_4:-4386438 Msa0831380:intron
GATAGAGAGCTTACTTGAAC+AGG 0.401752 5_4:+4384095 None:intergenic
AGAGGATTGATGGGTTATCT+TGG 0.407800 5_4:-4385313 Msa0831380:CDS
CAGGGCAAGGAAAGAAATAA+AGG 0.409618 5_4:+4387546 None:intergenic
TCCAGCATACCTATCTGAAT+TGG 0.410036 5_4:+4384519 None:intergenic
TGAATGCTGGTAATATCTTA+GGG 0.422048 5_4:-4386068 Msa0831380:CDS
GATCGCAGACGCTGAATCTT+CGG 0.422303 5_4:+4385791 None:intergenic
TACTGATCATGTGTTGCTGT+TGG 0.429478 5_4:+4382792 None:intergenic
TCCAAACAACTTCTAGCAGC+TGG 0.429591 5_4:-4385855 Msa0831380:CDS
TAAGATATTACCAGCATTCA+AGG 0.429808 5_4:+4386071 None:intergenic
GTAAATTCTTACTCATGCTC+AGG 0.431042 5_4:+4384995 None:intergenic
ACTGATCATGTGTTGCTGTT+GGG 0.435438 5_4:+4382793 None:intergenic
ATCTTAGGGGCAGAAGATAA+TGG 0.440365 5_4:-4386054 Msa0831380:CDS
ATGTGTTGGTAGAGGATTGA+TGG 0.443054 5_4:-4385323 Msa0831380:CDS
AAGTAGCATACCTGTAGTTA+TGG 0.444576 5_4:+4386620 None:intergenic
CCTAGCTGATCCCTCAAAAT+CGG 0.445611 5_4:+4385912 None:intergenic
ATAGGCCTAGTGACTATTCA+AGG 0.450945 5_4:-4385714 Msa0831380:CDS
ACTTTGATCCTAGTTTAAGA+TGG 0.450999 5_4:-4385741 Msa0831380:CDS
CCTTCATTATTTCCTTACTT+AGG 0.451421 5_4:-4387437 Msa0831380:five_prime_UTR
AGTCGTGGTTGCACGGTTGA+AGG 0.453437 5_4:+4385817 None:intergenic
AAGAAGAAACTCTGATGTAC+TGG 0.455706 5_4:-4385086 Msa0831380:CDS
CTTCTCCATGCCACAAAATA+CGG 0.455983 5_4:+4384345 None:intergenic
ATTTAGCAGGAACTCGAGTC+AGG 0.458225 5_4:-4386689 Msa0831380:CDS
AATACTTTAAACAGTCTTCC+CGG 0.459685 5_4:-4386000 Msa0831380:CDS
ACCAATTCAGATAGGTATGC+TGG 0.459904 5_4:-4384520 Msa0831380:CDS
TTTCTCTCTCTTGGAAACAT+AGG 0.462677 5_4:+4387594 None:intergenic
CTTTGATCCTAGTTTAAGAT+GGG 0.463958 5_4:-4385740 Msa0831380:CDS
TTATGCTCAAATTACTGGGC+GGG 0.464297 5_4:+4386485 None:intergenic
GACCGAGTGACTATTATTCA+AGG 0.467810 5_4:-4385603 Msa0831380:CDS
GACCGAGTGACTATTATTCA+AGG 0.467810 5_4:-4385642 Msa0831380:CDS
GAAGATGGATACAGCATGCC+AGG 0.470098 5_4:-4385451 Msa0831380:CDS
GCCCAAAATAAGCCATAAAC+CGG 0.473387 5_4:+4384269 None:intergenic
ACATTGTCAAAATCATCATA+TGG 0.475557 5_4:-4382246 Msa0831380:three_prime_UTR
CCTGCTGCATCGGGTGAAGA+TGG 0.478117 5_4:-4385466 Msa0831380:CDS
GTTGAGTACTTATATGTTGG+AGG 0.480485 5_4:+4384541 None:intergenic
ATTTGTAGCCATTTAACCTC+AGG 0.480590 5_4:-4385130 Msa0831380:CDS
GGTTTCTTCAATTACCAAGT+TGG 0.482493 5_4:-4387326 Msa0831380:five_prime_UTR
TTGGTTGAGTACTTATATGT+TGG 0.482564 5_4:+4384538 None:intergenic
ATCACCTTCTTTCTGTCCTG+AGG 0.483661 5_4:+4385114 None:intergenic
TAAAGACAAAGTCCTAAGTA+AGG 0.483982 5_4:+4387425 None:intergenic
TATGGAGGACCTGCTGCATC+GGG 0.488530 5_4:-4385475 Msa0831380:CDS
TTATGGAGGACCTGCTGCAT+CGG 0.488726 5_4:-4385476 Msa0831380:CDS
AAGATTCAGCGTCTGCGATC+GGG 0.489181 5_4:-4385788 Msa0831380:CDS
CTGTACTCGGAGAATCTTCA+AGG 0.492802 5_4:+4385518 None:intergenic
TCCATTACCTCCACTAGTAC+CGG 0.492802 5_4:+4385981 None:intergenic
AACTTCTAGCAGCTGGGGAA+TGG 0.493393 5_4:-4385848 Msa0831380:CDS
TCGGTCTAGTCGTGGTTGCA+CGG 0.493590 5_4:+4385810 None:intergenic
TTCTGACAGTGCGAAGTCTC+CGG 0.493689 5_4:-4385026 Msa0831380:CDS
CCTTGTTGCAAGTAAACAAA+TGG 0.494231 5_4:-4385413 Msa0831380:CDS
CCCGGTACTAGTGGAGGTAA+TGG 0.496176 5_4:-4385982 Msa0831380:CDS
TATGCTCAAATTACTGGGCG+GGG 0.497004 5_4:+4386486 None:intergenic
ATGGTAAAAGTTCCTCCACT+TGG 0.497925 5_4:+4384186 None:intergenic
CTATAACCCCATCTTAAACT+AGG 0.499596 5_4:+4385733 None:intergenic
GAAGGAAGTAAAAGAAAGTG+AGG 0.500585 5_4:+4387455 None:intergenic
AACAGTCTTCCCGGTACTAG+TGG 0.503949 5_4:-4385991 Msa0831380:CDS
TCTCTTTCATCAAACTTCAA+AGG 0.504337 5_4:+4382979 None:intergenic
CTTCGCAGAACGGTAGTTGA+GGG 0.507483 5_4:+4384760 None:intergenic
TTTCTTACCGTTTGGGTGAG+AGG 0.507778 5_4:-4385382 Msa0831380:CDS
AATTATGAACAAAGTGAAGC+TGG 0.510484 5_4:+4382716 None:intergenic
GCATTTGCAGGATGGAAAGA+AGG 0.511017 5_4:-4384577 Msa0831380:CDS
GAGATTGTTCCCTTGAATGC+TGG 0.512043 5_4:-4386081 Msa0831380:CDS
ATATGCATCCAAAGGAGAAA+AGG 0.514337 5_4:-4384492 Msa0831380:CDS
CCCCATCTTGAATAGTCACT+TGG 0.520446 5_4:+4385562 None:intergenic
AGTACTCAACCAATTCAGAT+AGG 0.522078 5_4:-4384528 Msa0831380:CDS
GAAGATTCAGCGTCTGCGAT+CGG 0.522328 5_4:-4385789 Msa0831380:CDS
CAGAGACATGCTAATTGAGA+TGG 0.523126 5_4:+4385174 None:intergenic
CAAGACATTGTGACAGGGCA+AGG 0.524347 5_4:+4387533 None:intergenic
CATTTCCCAAATACCAAGAA+AGG 0.524566 5_4:-4382951 Msa0831380:intron
TTGGGTGAGAGGTGAATTGA+AGG 0.526319 5_4:-4385371 Msa0831380:CDS
CTGCACAATCATTATTAGCC+AGG 0.530772 5_4:-4382636 Msa0831380:intron
ACAGCATGCCAGGGCGCTCA+AGG 0.531941 5_4:-4385441 Msa0831380:CDS
CCAAACAACTTCTAGCAGCT+GGG 0.532075 5_4:-4385854 Msa0831380:CDS
CTGGCTAATAATGATTGTGC+AGG 0.532624 5_4:+4382637 None:intergenic
CCATCTTCACCCGATGCAGC+AGG 0.533140 5_4:+4385466 None:intergenic
ACCAAGTGACTATTCAAGAT+GGG 0.534582 5_4:-4385563 Msa0831380:CDS
GTTGCAAGTAAACAAATGGT+TGG 0.537426 5_4:-4385409 Msa0831380:CDS
GCAGGAACTCGAGTCAGGTT+AGG 0.539731 5_4:-4386684 Msa0831380:CDS
TCATGCTCAGGGATTGTCTC+CGG 0.540169 5_4:+4385007 None:intergenic
GTAGAACAAGACATTGTGAC+AGG 0.541939 5_4:+4387527 None:intergenic
CCTAAGTAAGGAAATAATGA+AGG 0.542678 5_4:+4387437 None:intergenic
CCAAGAACATAAATATCTGC+AGG 0.544720 5_4:+4386439 None:intergenic
CAATAAGCGCCTTCGCAGAA+CGG 0.548412 5_4:+4384750 None:intergenic
CTTGCCCTTGAATAGTCACT+AGG 0.549171 5_4:+4385709 None:intergenic
TCATTTATGCTCAAATTACT+GGG 0.549743 5_4:+4386481 None:intergenic
TTATAGATGTCCATAACTAC+AGG 0.550251 5_4:-4386630 Msa0831380:intron
CCATTTGTTTACTTGCAACA+AGG 0.550429 5_4:+4385413 None:intergenic
GACCAAGTGACTATTCAAGA+TGG 0.550949 5_4:-4385564 Msa0831380:CDS
AATGTACAGAGAAATTTAGC+AGG 0.552127 5_4:-4386702 Msa0831380:intron
TGTACTTAATGAAGCTCTCA+TGG 0.553658 5_4:-4387135 Msa0831380:intron
AAAGTATCATGTGTTGGTAG+AGG 0.555572 5_4:-4385331 Msa0831380:CDS
AGGGCAAGGAAAGAAATAAA+GGG 0.557287 5_4:+4387547 None:intergenic
TGAGGACGCTACTCAACAAA+GGG 0.557372 5_4:-4387068 Msa0831380:CDS
CAATTCACCTCTCACCCAAA+CGG 0.559109 5_4:+4385375 None:intergenic
TTGAGTACTTATATGTTGGA+GGG 0.559129 5_4:+4384542 None:intergenic
AGAATTCATCATTCTTCCAT+CGG 0.559350 5_4:-4385885 Msa0831380:CDS
CCTTCGCAGAACGGTAGTTG+AGG 0.561020 5_4:+4384759 None:intergenic
AACATGAAAGTATCATGTGT+TGG 0.564736 5_4:-4385337 Msa0831380:CDS
GCTGCTAGAAGTTGTTTGGA+AGG 0.564774 5_4:+4385858 None:intergenic
GAGTGATGATCTTACCAAGC+AGG 0.565102 5_4:+4384463 None:intergenic
AGAAAAGGCGAACACCTGCT+TGG 0.567924 5_4:-4384477 Msa0831380:intron
TCGGCATTCAATTCTACCAC+TGG 0.569184 5_4:+4385931 None:intergenic
TTGTTTGGAAGGATCGCCGA+TGG 0.573538 5_4:+4385869 None:intergenic
AATTTAGCTCAGTGTATCCG+TGG 0.574646 5_4:+4384159 None:intergenic
TCCATGGTTTGACTCAACCT+CGG 0.575355 5_4:+4384247 None:intergenic
GTGGCTTGGAATACAGAAGC+AGG 0.576308 5_4:-4386863 Msa0831380:CDS
TTCAATTCTACCACTGGCTG+AGG 0.577913 5_4:+4385937 None:intergenic
TGCTGTTGTAGCAGAGAACA+AGG 0.578610 5_4:-4387618 Msa0831380:five_prime_UTR
TGTGTTGGTAGAGGATTGAT+GGG 0.580183 5_4:-4385322 Msa0831380:CDS
GGTGAAAACAAGACTGTACT+CGG 0.580831 5_4:+4385505 None:intergenic
AGGCTGTACCTTGAGCGCCC+TGG 0.581464 5_4:+4385433 None:intergenic
ACTATTTCTATTCAGCAAGC+GGG 0.581688 5_4:-4383006 Msa0831380:intron
CTGAGGACGCTACTCAACAA+AGG 0.588845 5_4:-4387069 Msa0831380:CDS
TTAACCTCAGGACAGAAAGA+AGG 0.589550 5_4:-4385118 Msa0831380:CDS
GAGGTCGTGCATTTGCAGGA+TGG 0.593442 5_4:-4384585 Msa0831380:CDS
GACCGAGTGACTATTATACA+AGG 0.594922 5_4:-4385678 Msa0831380:CDS
CATTTGCAGGATGGAAAGAA+GGG 0.602587 5_4:-4384576 Msa0831380:CDS
GCCCTTGAATAATAGTCACT+CGG 0.602807 5_4:+4385601 None:intergenic
CTGAATCTTCGGTCTAGTCG+TGG 0.604034 5_4:+4385802 None:intergenic
TTTCCTCAGAGTTACCAACT+TGG 0.605370 5_4:+4387312 None:intergenic
TAAATTCTTACTCATGCTCA+GGG 0.606090 5_4:+4384996 None:intergenic
GGACATCTATAATTCTAGGA+TGG 0.608490 5_4:+4386641 None:intergenic
CCATTACCTCCACTAGTACC+GGG 0.610322 5_4:+4385982 None:intergenic
CCTCAACTACCGTTCTGCGA+AGG 0.610354 5_4:-4384759 Msa0831380:CDS
GCCCTTGAATAATAGTCACT+CGG 0.611858 5_4:+4385640 None:intergenic
ATAAATATCTGCAGGCGGTG+AGG 0.612794 5_4:+4386447 None:intergenic
CGAGTCAGGTTAGGCGAGCG+AGG 0.613788 5_4:-4386675 Msa0831380:CDS
TGATTGTGCAGGATATGGTA+TGG 0.614521 5_4:+4382648 None:intergenic
GTTGGTACATGGAATGTGGC+CGG 0.616493 5_4:-4386514 Msa0831380:CDS
CTATAATTCTAGGATGGTCA+AGG 0.617072 5_4:+4386647 None:intergenic
TTTGATCCTAGTTTAAGATG+GGG 0.618992 5_4:-4385739 Msa0831380:CDS
ACTGGCTGAGGTATAGGAGA+AGG 0.619090 5_4:+4385949 None:intergenic
AAGGAAGTAAAAGAAAGTGA+GGG 0.623001 5_4:+4387456 None:intergenic
TGGAGATGATATGCATCCAA+AGG 0.623938 5_4:-4384500 Msa0831380:CDS
ACCGAGTGACTATTATTCAA+GGG 0.629387 5_4:-4385602 Msa0831380:CDS
ACCGAGTGACTATTATTCAA+GGG 0.629387 5_4:-4385641 Msa0831380:CDS
CAAACAACTTCTAGCAGCTG+GGG 0.630987 5_4:-4385853 Msa0831380:CDS
AAGATATTACCAGCATTCAA+GGG 0.633888 5_4:+4386072 None:intergenic
GGCCTTGTATAATAGTCACT+CGG 0.636022 5_4:+4385676 None:intergenic
ATTTAGCTCAGTGTATCCGT+GGG 0.637611 5_4:+4384160 None:intergenic
GACGCTACTCAACAAAGGGA+TGG 0.637949 5_4:-4387064 Msa0831380:CDS
GAATGCTGGTAATATCTTAG+GGG 0.639487 5_4:-4386067 Msa0831380:CDS
ATAAGCCATAAACCGGTCTG+TGG 0.641383 5_4:+4384276 None:intergenic
TTGTCAAAATCATCATATGG+AGG 0.642044 5_4:-4382243 Msa0831380:three_prime_UTR
ATAGAGAGCTTACTTGAACA+GGG 0.644271 5_4:+4384096 None:intergenic
TTCTCCTATACCTCAGCCAG+TGG 0.645089 5_4:-4385947 Msa0831380:CDS
TGAGAATACCAAGAAAAGCA+AGG 0.646032 5_4:-4387238 Msa0831380:intron
TTCTCGTTCCAGAATCCAAG+TGG 0.646700 5_4:-4384201 Msa0831380:CDS
CTGTCAGAACCATGAACACG+TGG 0.651771 5_4:+4385040 None:intergenic
GCCGAGGTTGAGTCAAACCA+TGG 0.652096 5_4:-4384248 Msa0831380:CDS
TAGGCCTAGTGACTATTCAA+GGG 0.652233 5_4:-4385713 Msa0831380:CDS
CCAAGTGACTATTCAAGATG+GGG 0.653125 5_4:-4385562 Msa0831380:CDS
AGTCTTCCCGGTACTAGTGG+AGG 0.661740 5_4:-4385988 Msa0831380:CDS
TTTATGCTCAAATTACTGGG+CGG 0.668447 5_4:+4386484 None:intergenic
AAGATGGATACAGCATGCCA+GGG 0.670382 5_4:-4385450 Msa0831380:CDS
TCGTTCCAGAATCCAAGTGG+AGG 0.670823 5_4:-4384198 Msa0831380:CDS
TTGAGAATAGAGCAAAAGAG+AGG 0.672190 5_4:-4384604 Msa0831380:CDS
TTACCAAGTTGGTAACTCTG+AGG 0.681107 5_4:-4387315 Msa0831380:five_prime_UTR
CGTCAAATATCTTATGTACG+CGG 0.681567 5_4:-4384317 Msa0831380:CDS
CAACATCAAATGCAAAACTG+AGG 0.684800 5_4:-4387086 Msa0831380:CDS
GCAGGTCCTCCATAAGACAT+CGG 0.688092 5_4:+4385484 None:intergenic
AGCATTGTTAGAGAATGACC+AGG 0.689841 5_4:-4384711 Msa0831380:intron
AGAACATAAATATCTGCAGG+CGG 0.709644 5_4:+4386442 None:intergenic
GCAAGGAAAGAAATAAAGGG+AGG 0.723683 5_4:+4387550 None:intergenic
GGTTCATCTGATGATGACAA+TGG 0.730250 5_4:-4385541 Msa0831380:CDS
TAGAACAAGACATTGTGACA+GGG 0.733705 5_4:+4387528 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAACAAATTCAAAATT+AGG + chr5_4:4384914-4384933 None:intergenic 10.0%
!!! TTTTTTTTTTAATGTAATCA+AGG + chr5_4:4385951-4385970 None:intergenic 10.0%
!!! ATTTTGCTTATATTAAAAAA+CGG + chr5_4:4387289-4387308 None:intergenic 10.0%
!!! ATTTTGCTTATATTAAAAAA+CGG - chr5_4:4387289-4387308 Msa0831380:five_prime_UTR 10.0%
!!! TAAAGTGTTGAATTTAATAA+TGG + chr5_4:4382246-4382265 None:intergenic 15.0%
!! TATTAAATTCAACACTTTAA+AGG - chr5_4:4382247-4382266 Msa0831380:three_prime_UTR 15.0%
!! ATTAAATTCAACACTTTAAA+GGG - chr5_4:4382248-4382267 Msa0831380:three_prime_UTR 15.0%
!!! TTTTTTATGAACAAAATCAA+AGG - chr5_4:4382746-4382765 Msa0831380:three_prime_UTR 15.0%
!!! ATCATTTTCAAATGAAAATA+AGG + chr5_4:4382975-4382994 None:intergenic 15.0%
!! TTTATATTAAGAAATGCAAT+GGG + chr5_4:4384827-4384846 None:intergenic 15.0%
!! ATTTATATTAAGAAATGCAA+TGG + chr5_4:4384828-4384847 None:intergenic 15.0%
!!! CATTTTTTATTTTCATACAA+TGG - chr5_4:4386021-4386040 Msa0831380:CDS 15.0%
!! ATAAGCTGTAATTAAATTAT+AGG - chr5_4:4386159-4386178 Msa0831380:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr5_4:4386353-4386372 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr5_4:4386354-4386373 None:intergenic 15.0%
!! TTTCATAATATTAATTCACA+CGG - chr5_4:4386551-4386570 Msa0831380:intron 15.0%
!!! CATGATTCTTTAATTATTTT+TGG - chr5_4:4387435-4387454 Msa0831380:five_prime_UTR 15.0%
!! AATTATCTATTGTATTTGCA+GGG - chr5_4:4384536-4384555 Msa0831380:CDS 20.0%
!! TTATATTAAGAAATGCAATG+GGG + chr5_4:4384826-4384845 None:intergenic 20.0%
!! AAACAAATTCAAAATTAGGA+CGG + chr5_4:4384910-4384929 None:intergenic 20.0%
!!! TTTTATTCAGTCGAATTATA+TGG - chr5_4:4384927-4384946 Msa0831380:intron 20.0%
!! TTATGGCAATGTAAATATAT+AGG - chr5_4:4385362-4385381 Msa0831380:CDS 20.0%
!! AAAATGAAAACCAAACATAA+AGG - chr5_4:4385908-4385927 Msa0831380:CDS 20.0%
!! CCAACAATATAATAAGAAAA+AGG + chr5_4:4386117-4386136 None:intergenic 20.0%
!!! CCTTTTTCTTATTATATTGT+TGG - chr5_4:4386114-4386133 Msa0831380:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr5_4:4386284-4386303 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr5_4:4386394-4386413 None:intergenic 20.0%
!!! AAGAAAAGTGTATAAATGAA+GGG + chr5_4:4386418-4386437 None:intergenic 20.0%
!!! TAAGAAAAGTGTATAAATGA+AGG + chr5_4:4386419-4386438 None:intergenic 20.0%
!! GTATTCTAATTCAGATAAAA+GGG + chr5_4:4386694-4386713 None:intergenic 20.0%
!! AGTATTCTAATTCAGATAAA+AGG + chr5_4:4386695-4386714 None:intergenic 20.0%
!! AAAATAAATGTTACCTTTCT+TGG + chr5_4:4386800-4386819 None:intergenic 20.0%
!!! ATAAGCAAAATTGACTTTTT+AGG - chr5_4:4387191-4387210 Msa0831380:intron 20.0%
!!! ATAAGCAAAATTGACTTTTT+AGG + chr5_4:4387191-4387210 None:intergenic 20.0%
!!! TTATTTTATTGTTATTGTGC+AGG - chr5_4:4387378-4387397 Msa0831380:five_prime_UTR 20.0%
!!! TTTGACTGTTTTTATGTGTT+TGG - chr5_4:4382577-4382596 Msa0831380:intron 25.0%
!! TGAAAATAAGGCATTTCAAT+TGG + chr5_4:4382963-4382982 None:intergenic 25.0%
! TTATGGACATCTATAATTCT+AGG + chr5_4:4383101-4383120 None:intergenic 25.0%
! TCATTTATGCTCAAATTACT+GGG + chr5_4:4383257-4383276 None:intergenic 25.0%
! ATCATTTATGCTCAAATTAC+TGG + chr5_4:4383258-4383277 None:intergenic 25.0%
! GTAATTTGAGCATAAATGAT+TGG - chr5_4:4383258-4383277 Msa0831380:intron 25.0%
! TCAAATAAGTCAATCTAATC+AGG + chr5_4:4383367-4383386 None:intergenic 25.0%
!!! TTTACCTTTTGCTATAGAAA+TGG - chr5_4:4383520-4383539 Msa0831380:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG - chr5_4:4383576-4383595 Msa0831380:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG - chr5_4:4383577-4383596 Msa0831380:intron 25.0%
! CTGCAAATACAATAGATAAT+TGG + chr5_4:4384537-4384556 None:intergenic 25.0%
! CAATTATCTATTGTATTTGC+AGG - chr5_4:4384535-4384554 Msa0831380:CDS 25.0%
! TATATTAAGAAATGCAATGG+GGG + chr5_4:4384825-4384844 None:intergenic 25.0%
! GTGTATATTCACATTATTAC+TGG - chr5_4:4385105-4385124 Msa0831380:CDS 25.0%
! CTTAACCATACATAAGTATT+AGG - chr5_4:4385296-4385315 Msa0831380:intron 25.0%
! AAGTTCCTAATACTTATGTA+TGG + chr5_4:4385304-4385323 None:intergenic 25.0%
! TTAGGAACTTAGCAATAAAA+AGG - chr5_4:4385314-4385333 Msa0831380:CDS 25.0%
!! TACTTTTCTTCAATTTTCCA+TGG + chr5_4:4385507-4385526 None:intergenic 25.0%
! TAGTTACGTACTTACATTAA+AGG - chr5_4:4385731-4385750 Msa0831380:CDS 25.0%
! TTAGATTAATCGAGCATTAA+AGG + chr5_4:4385788-4385807 None:intergenic 25.0%
! AAAAAAAAAAATGATGCAGC+TGG - chr5_4:4385962-4385981 Msa0831380:CDS 25.0%
! TAGTAAAATATAGTGCACTA+AGG + chr5_4:4386056-4386075 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr5_4:4386285-4386304 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + chr5_4:4386306-4386325 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + chr5_4:4386307-4386326 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr5_4:4386395-4386414 None:intergenic 25.0%
!! AGAAAAGTGTATAAATGAAG+GGG + chr5_4:4386417-4386436 None:intergenic 25.0%
! TAACAAATTAGTACTGTCAT+TGG - chr5_4:4386487-4386506 Msa0831380:CDS 25.0%
! TACTAACAGTACTCAATTAA+AGG + chr5_4:4386584-4386603 None:intergenic 25.0%
! TAGTAGACAATATAGATAAG+AGG + chr5_4:4386864-4386883 None:intergenic 25.0%
! ATGATGATTATGATGTTTGA+TGG + chr5_4:4386973-4386992 None:intergenic 25.0%
!! AAGTTGAGTGTTTGTTAATA+GGG + chr5_4:4387050-4387069 None:intergenic 25.0%
!! AAAGTTGAGTGTTTGTTAAT+AGG + chr5_4:4387051-4387070 None:intergenic 25.0%
!!! AGAAGTATTTTTATAGTACC+TGG + chr5_4:4387120-4387139 None:intergenic 25.0%
! TGCTTATATTAAAAAACGGA+GGG + chr5_4:4387293-4387312 None:intergenic 25.0%
! TTGCTTATATTAAAAAACGG+AGG + chr5_4:4387292-4387311 None:intergenic 25.0%
! CATTCATTTAATGATGTATG+TGG - chr5_4:4387216-4387235 Msa0831380:intron 25.0%
! GATGTATGTGGTTAATAATA+TGG - chr5_4:4387228-4387247 Msa0831380:intron 25.0%
! TTGCTTATATTAAAAAACGG+AGG - chr5_4:4387292-4387311 Msa0831380:five_prime_UTR 25.0%
! TGCTTATATTAAAAAACGGA+GGG - chr5_4:4387293-4387312 Msa0831380:five_prime_UTR 25.0%
! CTTATATCACTAGTAACTTA+TGG + chr5_4:4387331-4387350 None:intergenic 25.0%
! ACATTGTCAAAATCATCATA+TGG - chr5_4:4387489-4387508 Msa0831380:five_prime_UTR 25.0%
AAGGAAGTAAAAGAAAGTGA+GGG + chr5_4:4382282-4382301 None:intergenic 30.0%
CCTAAGTAAGGAAATAATGA+AGG + chr5_4:4382301-4382320 None:intergenic 30.0%
CCTTCATTATTTCCTTACTT+AGG - chr5_4:4382298-4382317 Msa0831380:three_prime_UTR 30.0%
TAAAGACAAAGTCCTAAGTA+AGG + chr5_4:4382313-4382332 None:intergenic 30.0%
AGAAGAGAAAAACAAGAAGA+AGG + chr5_4:4382360-4382379 None:intergenic 30.0%
!! AAAGCAAAAAGTGTTGAGTT+TGG - chr5_4:4382388-4382407 Msa0831380:intron 30.0%
!! GTAAAAAACCTTGCTTTTCT+TGG + chr5_4:4382508-4382527 None:intergenic 30.0%
! TGAAACATGTTTCCTTTTTC+AGG - chr5_4:4382847-4382866 Msa0831380:intron 30.0%
ACAATCAAAAAGAGCAAAAC+AGG - chr5_4:4382922-4382941 Msa0831380:intron 30.0%
TCTCTGTACATTACAATTGA+GGG + chr5_4:4383025-4383044 None:intergenic 30.0%
TTCTCTGTACATTACAATTG+AGG + chr5_4:4383026-4383045 None:intergenic 30.0%
AATGTACAGAGAAATTTAGC+AGG - chr5_4:4383033-4383052 Msa0831380:intron 30.0%
TTATAGATGTCCATAACTAC+AGG - chr5_4:4383105-4383124 Msa0831380:intron 30.0%
CTGCAGATATTTATGTTCTT+GGG - chr5_4:4383297-4383316 Msa0831380:intron 30.0%
AGATATTTATGTTCTTGGGT+AGG - chr5_4:4383301-4383320 Msa0831380:intron 30.0%
TAAGCCATTTCTATAGCAAA+AGG + chr5_4:4383527-4383546 None:intergenic 30.0%
AAGATATTACCAGCATTCAA+GGG + chr5_4:4383666-4383685 None:intergenic 30.0%
TAAGATATTACCAGCATTCA+AGG + chr5_4:4383667-4383686 None:intergenic 30.0%
TTGAATGCTGGTAATATCTT+AGG - chr5_4:4383666-4383685 Msa0831380:intron 30.0%
TGAATGCTGGTAATATCTTA+GGG - chr5_4:4383667-4383686 Msa0831380:intron 30.0%
AATACTTTAAACAGTCTTCC+CGG - chr5_4:4383735-4383754 Msa0831380:intron 30.0%
AGAATTCATCATTCTTCCAT+CGG - chr5_4:4383850-4383869 Msa0831380:intron 30.0%
ACTTTGATCCTAGTTTAAGA+TGG - chr5_4:4383994-4384013 Msa0831380:intron 30.0%
! CTTTGATCCTAGTTTAAGAT+GGG - chr5_4:4383995-4384014 Msa0831380:intron 30.0%
! TTTGATCCTAGTTTAAGATG+GGG - chr5_4:4383996-4384015 Msa0831380:intron 30.0%
!! AACATGAAAGTATCATGTGT+TGG - chr5_4:4384398-4384417 Msa0831380:intron 30.0%
AGGGAAAGTTAAACAAGAAA+AGG + chr5_4:4384489-4384508 None:intergenic 30.0%
TGGAGATTCTTAAAAAGACA+AGG - chr5_4:4384669-4384688 Msa0831380:intron 30.0%
TAAATTCTTACTCATGCTCA+GGG + chr5_4:4384742-4384761 None:intergenic 30.0%
CTATGTAAGAAATCTAGACA+AGG + chr5_4:4384859-4384878 None:intergenic 30.0%
TCTAGATTTCTTACATAGAG+TGG - chr5_4:4384861-4384880 Msa0831380:intron 30.0%
GGTTATAGAATAGGTCTAAA+AGG + chr5_4:4385054-4385073 None:intergenic 30.0%
TGTTTGTGTGGTTATAGAAT+AGG + chr5_4:4385063-4385082 None:intergenic 30.0%
ACATAAGTACTCATTCGTAT+TGG + chr5_4:4385087-4385106 None:intergenic 30.0%
TTGAGTACTTATATGTTGGA+GGG + chr5_4:4385196-4385215 None:intergenic 30.0%
TTGGTTGAGTACTTATATGT+TGG + chr5_4:4385200-4385219 None:intergenic 30.0%
TGCTGACATTTCATAACTTA+TGG - chr5_4:4385345-4385364 Msa0831380:CDS 30.0%
!!! CTGAGCTAAATTTTTTCTGA+AGG - chr5_4:4385587-4385606 Msa0831380:CDS 30.0%
!!! GCTAAATTTTTTCTGAAGGA+AGG - chr5_4:4385591-4385610 Msa0831380:CDS 30.0%
!!! AAATTTTTTCTGAAGGAAGG+AGG - chr5_4:4385594-4385613 Msa0831380:CDS 30.0%
GTCACAATTTCAAAATTGCA+GGG - chr5_4:4385676-4385695 Msa0831380:CDS 30.0%
TAAAGGACTTCAATTCTCTA+CGG - chr5_4:4385748-4385767 Msa0831380:CDS 30.0%
GCTTATTAACCTTGTACTTT+CGG + chr5_4:4386145-4386164 None:intergenic 30.0%
!! AACTATTTCTATTCAGCAAG+CGG - chr5_4:4386728-4386747 Msa0831380:intron 30.0%
TCTCTTTCATCAAACTTCAA+AGG + chr5_4:4386759-4386778 None:intergenic 30.0%
TGTTACCTTTCTTGGTATTT+GGG + chr5_4:4386792-4386811 None:intergenic 30.0%
ATGTTACCTTTCTTGGTATT+TGG + chr5_4:4386793-4386812 None:intergenic 30.0%
AATTATGAACAAAGTGAAGC+TGG + chr5_4:4387022-4387041 None:intergenic 30.0%
CATTCATTCAATGATGTATG+TGG + chr5_4:4387255-4387274 None:intergenic 30.0%
TTGTCAAAATCATCATATGG+AGG - chr5_4:4387492-4387511 Msa0831380:five_prime_UTR 30.0%
TTTCTCTCTCTTGGAAACAT+AGG + chr5_4:4382144-4382163 None:intergenic 35.0%
AGGGCAAGGAAAGAAATAAA+GGG + chr5_4:4382191-4382210 None:intergenic 35.0%
TAGAACAAGACATTGTGACA+GGG + chr5_4:4382210-4382229 None:intergenic 35.0%
GAAGGAAGTAAAAGAAAGTG+AGG + chr5_4:4382283-4382302 None:intergenic 35.0%
AGAGAAAAACAAGAAGAAGG+TGG + chr5_4:4382357-4382376 None:intergenic 35.0%
GGTTTCTTCAATTACCAAGT+TGG - chr5_4:4382409-4382428 Msa0831380:intron 35.0%
!! GAGGAAAAAAAGCATTCTTG+AGG - chr5_4:4382439-4382458 Msa0831380:intron 35.0%
!! GAAAAAAAGCATTCTTGAGG+AGG - chr5_4:4382442-4382461 Msa0831380:intron 35.0%
TGAGAATACCAAGAAAAGCA+AGG - chr5_4:4382497-4382516 Msa0831380:intron 35.0%
TGTACTTAATGAAGCTCTCA+TGG - chr5_4:4382600-4382619 Msa0831380:intron 35.0%
CAACATCAAATGCAAAACTG+AGG - chr5_4:4382649-4382668 Msa0831380:three_prime_UTR 35.0%
ACCAAGATGCAAATGCAAAA+GGG - chr5_4:4382770-4382789 Msa0831380:three_prime_UTR 35.0%
!!! AACATGTTTCCTTTTTCAGG+AGG - chr5_4:4382850-4382869 Msa0831380:intron 35.0%
!! TTGCTCTTTTTGATTGTGCT+TGG + chr5_4:4382919-4382938 None:intergenic 35.0%
!! CTATAATTCTAGGATGGTCA+AGG + chr5_4:4383091-4383110 None:intergenic 35.0%
! GGACATCTATAATTCTAGGA+TGG + chr5_4:4383097-4383116 None:intergenic 35.0%
AAGTAGCATACCTGTAGTTA+TGG + chr5_4:4383118-4383137 None:intergenic 35.0%
! TTTGTGAGCAGCATTTTTGT+TGG - chr5_4:4383203-4383222 Msa0831380:intron 35.0%
! TTTTGTTGGTACATGGAATG+TGG - chr5_4:4383217-4383236 Msa0831380:intron 35.0%
TTTATGCTCAAATTACTGGG+CGG + chr5_4:4383254-4383273 None:intergenic 35.0%
AGAACATAAATATCTGCAGG+CGG + chr5_4:4383296-4383315 None:intergenic 35.0%
CCAAGAACATAAATATCTGC+AGG + chr5_4:4383299-4383318 None:intergenic 35.0%
CCTGCAGATATTTATGTTCT+TGG - chr5_4:4383296-4383315 Msa0831380:intron 35.0%
TTCCATAAGCTCTTCATGAT+AGG - chr5_4:4383459-4383478 Msa0831380:intron 35.0%
AACCTATCATGAAGAGCTTA+TGG + chr5_4:4383464-4383483 None:intergenic 35.0%
GAATGCTGGTAATATCTTAG+GGG - chr5_4:4383668-4383687 Msa0831380:intron 35.0%
!!! AATGAGAGCTAGCCATTTTT+TGG + chr5_4:4383712-4383731 None:intergenic 35.0%
! AAAAAATGGCTAGCTCTCAT+TGG - chr5_4:4383711-4383730 Msa0831380:intron 35.0%
!!! AGAATTGAATGCCGATTTTG+AGG - chr5_4:4383812-4383831 Msa0831380:intron 35.0%
!!! GAATTGAATGCCGATTTTGA+GGG - chr5_4:4383813-4383832 Msa0831380:intron 35.0%
CTATAACCCCATCTTAAACT+AGG + chr5_4:4384005-4384024 None:intergenic 35.0%
! CTAGTTTAAGATGGGGTTAT+AGG - chr5_4:4384003-4384022 Msa0831380:intron 35.0%
ACCGAGTGACTATTATTCAA+GGG - chr5_4:4384094-4384113 Msa0831380:intron 35.0%
ACCGAGTGACTATTATTCAA+GGG - chr5_4:4384094-4384113 Msa0831380:intron 35.0%
ACCAAGTGACTATTCAAGAT+GGG - chr5_4:4384172-4384191 Msa0831380:CDS 35.0%
! TTGTTTTCACCGATGTCTTA+TGG - chr5_4:4384242-4384261 Msa0831380:CDS 35.0%
CCATTTGTTTACTTGCAACA+AGG + chr5_4:4384325-4384344 None:intergenic 35.0%
CCTTGTTGCAAGTAAACAAA+TGG - chr5_4:4384322-4384341 Msa0831380:CDS 35.0%
GTTGCAAGTAAACAAATGGT+TGG - chr5_4:4384326-4384345 Msa0831380:CDS 35.0%
TTGGAATCTTTCTTACCGTT+TGG - chr5_4:4384345-4384364 Msa0831380:CDS 35.0%
TGGAATCTTTCTTACCGTTT+GGG - chr5_4:4384346-4384365 Msa0831380:CDS 35.0%
! AAAGTATCATGTGTTGGTAG+AGG - chr5_4:4384404-4384423 Msa0831380:intron 35.0%
!! GATGGGTTATCTTGGAAATA+AGG - chr5_4:4384430-4384449 Msa0831380:intron 35.0%
TGTCACGAACATTCTTCAAA+GGG + chr5_4:4384508-4384527 None:intergenic 35.0%
TTGTCACGAACATTCTTCAA+AGG + chr5_4:4384509-4384528 None:intergenic 35.0%
ATTTGTAGCCATTTAACCTC+AGG - chr5_4:4384605-4384624 Msa0831380:CDS 35.0%
AAGAAGAAACTCTGATGTAC+TGG - chr5_4:4384649-4384668 Msa0831380:intron 35.0%
GTAAATTCTTACTCATGCTC+AGG + chr5_4:4384743-4384762 None:intergenic 35.0%
CATGAGTAAGAATTTACCAG+CGG - chr5_4:4384746-4384765 Msa0831380:CDS 35.0%
TTCAGTCGAATTATATGGCT+TGG - chr5_4:4384932-4384951 Msa0831380:intron 35.0%
! ATAGGTCTAAAAGGTATACC+TGG + chr5_4:4385045-4385064 None:intergenic 35.0%
!! ATTCGTATTGGTTGTTTGTG+TGG + chr5_4:4385075-4385094 None:intergenic 35.0%
TTGAGAATAGAGCAAAAGAG+AGG - chr5_4:4385131-4385150 Msa0831380:CDS 35.0%
GTTGAGTACTTATATGTTGG+AGG + chr5_4:4385197-4385216 None:intergenic 35.0%
AGTACTCAACCAATTCAGAT+AGG - chr5_4:4385207-4385226 Msa0831380:intron 35.0%
ATATGCATCCAAAGGAGAAA+AGG - chr5_4:4385243-4385262 Msa0831380:intron 35.0%
GGAACTTAGCAATAAAAAGG+AGG - chr5_4:4385317-4385336 Msa0831380:CDS 35.0%
CGTCAAATATCTTATGTACG+CGG - chr5_4:4385418-4385437 Msa0831380:CDS 35.0%
!! ACCGGTTTATGGCTTATTTT+GGG - chr5_4:4385465-4385484 Msa0831380:CDS 35.0%
! GAACTTTTACCATATTCCCA+CGG - chr5_4:4385559-4385578 Msa0831380:CDS 35.0%
ATAGAGAGCTTACTTGAACA+GGG + chr5_4:4385642-4385661 None:intergenic 35.0%
GGTCACAATTTCAAAATTGC+AGG - chr5_4:4385675-4385694 Msa0831380:CDS 35.0%
!! TTCAAAATTGCAGGGCATTT+TGG - chr5_4:4385684-4385703 Msa0831380:CDS 35.0%
TTAATCGAGCATTAAAGGTG+CGG + chr5_4:4385783-4385802 None:intergenic 35.0%
TTAATCCTACCGAACTTACA+AGG - chr5_4:4385837-4385856 Msa0831380:CDS 35.0%
TTTGCTCAGACCTTTATGTT+TGG + chr5_4:4385921-4385940 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr5_4:4386271-4386290 None:intergenic 35.0%
TGTATAAATGAAGGGGAAAG+TGG + chr5_4:4386410-4386429 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr5_4:4386440-4386459 Msa0831380:CDS 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr5_4:4386453-4386472 Msa0831380:CDS 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr5_4:4386454-4386473 Msa0831380:CDS 35.0%
ATGATTAGCATTCTGACATC+AGG - chr5_4:4386521-4386540 Msa0831380:CDS 35.0%
!! ACTATTTCTATTCAGCAAGC+GGG - chr5_4:4386729-4386748 Msa0831380:intron 35.0%
CATTTCCCAAATACCAAGAA+AGG - chr5_4:4386784-4386803 Msa0831380:intron 35.0%
!!! CTTACTTGCTTCTGCTTTTT+TGG - chr5_4:4386832-4386851 Msa0831380:CDS 35.0%
CCTGAGATGAAAAAGAGAAA+AGG + chr5_4:4386899-4386918 None:intergenic 35.0%
!! CCTTTTCTCTTTTTCATCTC+AGG - chr5_4:4386896-4386915 Msa0831380:intron 35.0%
! TTATTGTTATTGTGCAGGAG+TGG - chr5_4:4387383-4387402 Msa0831380:five_prime_UTR 35.0%
GTGTTTCAGTTTCTCTCTCT+TGG + chr5_4:4382153-4382172 None:intergenic 40.0%
GCAAGGAAAGAAATAAAGGG+AGG + chr5_4:4382188-4382207 None:intergenic 40.0%
CAGGGCAAGGAAAGAAATAA+AGG + chr5_4:4382192-4382211 None:intergenic 40.0%
GTAGAACAAGACATTGTGAC+AGG + chr5_4:4382211-4382230 None:intergenic 40.0%
!! TTACCAAGTTGGTAACTCTG+AGG - chr5_4:4382420-4382439 Msa0831380:intron 40.0%
TTTCCTCAGAGTTACCAACT+TGG + chr5_4:4382426-4382445 None:intergenic 40.0%
GCTCTCATGGTCAAAGAAAA+TGG - chr5_4:4382613-4382632 Msa0831380:intron 40.0%
CACCAAGATGCAAATGCAAA+AGG - chr5_4:4382769-4382788 Msa0831380:three_prime_UTR 40.0%
! ACCCTTTTGCATTTGCATCT+TGG + chr5_4:4382774-4382793 None:intergenic 40.0%
!!! ATGTTTCCTTTTTCAGGAGG+TGG - chr5_4:4382853-4382872 Msa0831380:intron 40.0%
! GCAGCATTTTTGTTGGTACA+TGG - chr5_4:4383210-4383229 Msa0831380:intron 40.0%
TTATGCTCAAATTACTGGGC+GGG + chr5_4:4383253-4383272 None:intergenic 40.0%
ATCTTAGGGGCAGAAGATAA+TGG - chr5_4:4383681-4383700 Msa0831380:intron 40.0%
ATAATGGCCCTGCCAAAAAA+TGG - chr5_4:4383697-4383716 Msa0831380:intron 40.0%
! ATCGGGTAATTTTCGGTAAC+AGG - chr5_4:4383964-4383983 Msa0831380:intron 40.0%
ATAGGCCTAGTGACTATTCA+AGG - chr5_4:4384021-4384040 Msa0831380:intron 40.0%
TAGGCCTAGTGACTATTCAA+GGG - chr5_4:4384022-4384041 Msa0831380:intron 40.0%
GACCGAGTGACTATTATACA+AGG - chr5_4:4384057-4384076 Msa0831380:intron 40.0%
! GGCCTTGTATAATAGTCACT+CGG + chr5_4:4384062-4384081 None:intergenic 40.0%
GACCGAGTGACTATTATTCA+AGG - chr5_4:4384093-4384112 Msa0831380:intron 40.0%
GCCCTTGAATAATAGTCACT+CGG + chr5_4:4384098-4384117 None:intergenic 40.0%
GACCGAGTGACTATTATTCA+AGG - chr5_4:4384093-4384112 Msa0831380:intron 40.0%
GCCCTTGAATAATAGTCACT+CGG + chr5_4:4384098-4384117 None:intergenic 40.0%
GACCAAGTGACTATTCAAGA+TGG - chr5_4:4384171-4384190 Msa0831380:CDS 40.0%
CCAAGTGACTATTCAAGATG+GGG - chr5_4:4384173-4384192 Msa0831380:CDS 40.0%
! GGTTCATCTGATGATGACAA+TGG - chr5_4:4384194-4384213 Msa0831380:CDS 40.0%
GGTGAAAACAAGACTGTACT+CGG + chr5_4:4384233-4384252 None:intergenic 40.0%
! TTTTCACCGATGTCTTATGG+AGG - chr5_4:4384245-4384264 Msa0831380:CDS 40.0%
! ATGTGTTGGTAGAGGATTGA+TGG - chr5_4:4384412-4384431 Msa0831380:intron 40.0%
! TGTGTTGGTAGAGGATTGAT+GGG - chr5_4:4384413-4384432 Msa0831380:intron 40.0%
!! AGAGGATTGATGGGTTATCT+TGG - chr5_4:4384422-4384441 Msa0831380:intron 40.0%
CAGAGACATGCTAATTGAGA+TGG + chr5_4:4384564-4384583 None:intergenic 40.0%
CTTTCTGTCCTGAGGTTAAA+TGG + chr5_4:4384616-4384635 None:intergenic 40.0%
TTAACCTCAGGACAGAAAGA+AGG - chr5_4:4384617-4384636 Msa0831380:intron 40.0%
!! GACATTTTAATGTATGCCGC+TGG + chr5_4:4384765-4384784 None:intergenic 40.0%
CGCTTATTGAGATGCAAAAC+TGG - chr5_4:4384999-4385018 Msa0831380:intron 40.0%
AGCATTGTTAGAGAATGACC+AGG - chr5_4:4385024-4385043 Msa0831380:CDS 40.0%
CATTTGCAGGATGGAAAGAA+GGG - chr5_4:4385159-4385178 Msa0831380:CDS 40.0%
ACCAATTCAGATAGGTATGC+TGG - chr5_4:4385215-4385234 Msa0831380:intron 40.0%
TCCAGCATACCTATCTGAAT+TGG + chr5_4:4385219-4385238 None:intergenic 40.0%
TGGAGATGATATGCATCCAA+AGG - chr5_4:4385235-4385254 Msa0831380:intron 40.0%
! ATAGGTGTGACCGTATTTTG+TGG - chr5_4:4385380-4385399 Msa0831380:CDS 40.0%
CTTCTCCATGCCACAAAATA+CGG + chr5_4:4385393-4385412 None:intergenic 40.0%
! AAGATTTTCAGACCACAGAC+CGG - chr5_4:4385447-4385466 Msa0831380:CDS 40.0%
!! GACCGGTTTATGGCTTATTT+TGG - chr5_4:4385464-4385483 Msa0831380:CDS 40.0%
GCCCAAAATAAGCCATAAAC+CGG + chr5_4:4385469-4385488 None:intergenic 40.0%
ATGGTAAAAGTTCCTCCACT+TGG + chr5_4:4385552-4385571 None:intergenic 40.0%
! ATTTAGCTCAGTGTATCCGT+GGG + chr5_4:4385578-4385597 None:intergenic 40.0%
! AATTTAGCTCAGTGTATCCG+TGG + chr5_4:4385579-4385598 None:intergenic 40.0%
GATAGAGAGCTTACTTGAAC+AGG + chr5_4:4385643-4385662 None:intergenic 40.0%
TAAGCTCTCTATCCTATTCG+CGG - chr5_4:4385650-4385669 Msa0831380:CDS 40.0%
TTAACCTTGTACTTTCGGTC+TGG + chr5_4:4386140-4386159 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr5_4:4386270-4386289 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + chr5_4:4386456-4386475 None:intergenic 40.0%
! ACTGATCATGTGTTGCTGTT+GGG + chr5_4:4386945-4386964 None:intergenic 40.0%
! TACTGATCATGTGTTGCTGT+TGG + chr5_4:4386946-4386965 None:intergenic 40.0%
TGCTGTTGTAGCAGAGAACA+AGG - chr5_4:4382117-4382136 Msa0831380:three_prime_UTR 45.0%
TGAGGACGCTACTCAACAAA+GGG - chr5_4:4382667-4382686 Msa0831380:three_prime_UTR 45.0%
!! CAAAGGGATGGTTTTGCTTC+TGG - chr5_4:4382683-4382702 Msa0831380:three_prime_UTR 45.0%
ATTTAGCAGGAACTCGAGTC+AGG - chr5_4:4383046-4383065 Msa0831380:intron 45.0%
TATGCTCAAATTACTGGGCG+GGG + chr5_4:4383252-4383271 None:intergenic 45.0%
ATAAATATCTGCAGGCGGTG+AGG + chr5_4:4383291-4383310 None:intergenic 45.0%
TACTAGTGCTCTTCCCTGTT+TGG + chr5_4:4383593-4383612 None:intergenic 45.0%
GAGATTGTTCCCTTGAATGC+TGG - chr5_4:4383654-4383673 Msa0831380:intron 45.0%
!!! GAGCTAGCCATTTTTTGGCA+GGG + chr5_4:4383707-4383726 None:intergenic 45.0%
!!! AGAGCTAGCCATTTTTTGGC+AGG + chr5_4:4383708-4383727 None:intergenic 45.0%
TCCATTACCTCCACTAGTAC+CGG + chr5_4:4383757-4383776 None:intergenic 45.0%
! TTCAATTCTACCACTGGCTG+AGG + chr5_4:4383801-4383820 None:intergenic 45.0%
TCGGCATTCAATTCTACCAC+TGG + chr5_4:4383807-4383826 None:intergenic 45.0%
CCTAGCTGATCCCTCAAAAT+CGG + chr5_4:4383826-4383845 None:intergenic 45.0%
GCTGCTAGAAGTTGTTTGGA+AGG + chr5_4:4383880-4383899 None:intergenic 45.0%
TCCAAACAACTTCTAGCAGC+TGG - chr5_4:4383880-4383899 Msa0831380:intron 45.0%
CCAAACAACTTCTAGCAGCT+GGG - chr5_4:4383881-4383900 Msa0831380:intron 45.0%
CAAACAACTTCTAGCAGCTG+GGG - chr5_4:4383882-4383901 Msa0831380:intron 45.0%
! GTCTGCGATCGGGTAATTTT+CGG - chr5_4:4383957-4383976 Msa0831380:intron 45.0%
CTTGCCCTTGAATAGTCACT+AGG + chr5_4:4384029-4384048 None:intergenic 45.0%
CCCCATCTTGAATAGTCACT+TGG + chr5_4:4384176-4384195 None:intergenic 45.0%
CTGTACTCGGAGAATCTTCA+AGG + chr5_4:4384220-4384239 None:intergenic 45.0%
AAGATGGATACAGCATGCCA+GGG - chr5_4:4384285-4384304 Msa0831380:CDS 45.0%
TTTCTTACCGTTTGGGTGAG+AGG - chr5_4:4384353-4384372 Msa0831380:CDS 45.0%
CAATTCACCTCTCACCCAAA+CGG + chr5_4:4384363-4384382 None:intergenic 45.0%
TTGGGTGAGAGGTGAATTGA+AGG - chr5_4:4384364-4384383 Msa0831380:intron 45.0%
ATCACCTTCTTTCTGTCCTG+AGG + chr5_4:4384624-4384643 None:intergenic 45.0%
ACAAGGTTTCCACGTGTTCA+TGG - chr5_4:4384686-4384705 Msa0831380:intron 45.0%
GCATTTGCAGGATGGAAAGA+AGG - chr5_4:4385158-4385177 Msa0831380:CDS 45.0%
GAGTGATGATCTTACCAAGC+AGG + chr5_4:4385275-4385294 None:intergenic 45.0%
! TGTGACCGTATTTTGTGGCA+TGG - chr5_4:4385385-4385404 Msa0831380:CDS 45.0%
! CGTATTTTGTGGCATGGAGA+AGG - chr5_4:4385391-4385410 Msa0831380:CDS 45.0%
ATAAGCCATAAACCGGTCTG+TGG + chr5_4:4385462-4385481 None:intergenic 45.0%
!!! TTATGGCTTATTTTGGGCCG+AGG - chr5_4:4385471-4385490 Msa0831380:CDS 45.0%
TCCATGGTTTGACTCAACCT+CGG + chr5_4:4385491-4385510 None:intergenic 45.0%
TTCTCGTTCCAGAATCCAAG+TGG - chr5_4:4385534-4385553 Msa0831380:CDS 45.0%
AAGTTCCTCCACTTGGATTC+TGG + chr5_4:4385545-4385564 None:intergenic 45.0%
TCAGTGTATCCGTGGGAATA+TGG + chr5_4:4385571-4385590 None:intergenic 45.0%
AATTGTGACCATCCGCGAAT+AGG + chr5_4:4385665-4385684 None:intergenic 45.0%
! ATCCCTTTGGGAGAGAGAAT+GGG + chr5_4:4386085-4386104 None:intergenic 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr5_4:4386458-4386477 Msa0831380:CDS 45.0%
!!! AAAATGAATTTTTAATTTAA+AGG + chr5_4:4382730-4382749 None:intergenic 5.0%
CAAGACATTGTGACAGGGCA+AGG + chr5_4:4382205-4382224 None:intergenic 50.0%
CTGAGGACGCTACTCAACAA+AGG - chr5_4:4382666-4382685 Msa0831380:three_prime_UTR 50.0%
GACGCTACTCAACAAAGGGA+TGG - chr5_4:4382671-4382690 Msa0831380:three_prime_UTR 50.0%
!! AGGGATGGTTTTGCTTCTGG+AGG - chr5_4:4382686-4382705 Msa0831380:three_prime_UTR 50.0%
!!! TCCTTTTTCAGGAGGTGGCT+TGG - chr5_4:4382858-4382877 Msa0831380:intron 50.0%
TCCAAGCCACCTCCTGAAAA+AGG + chr5_4:4382862-4382881 None:intergenic 50.0%
! GTGGCTTGGAATACAGAAGC+AGG - chr5_4:4382872-4382891 Msa0831380:intron 50.0%
GTTGGTACATGGAATGTGGC+CGG - chr5_4:4383221-4383240 Msa0831380:intron 50.0%
AACAGTCTTCCCGGTACTAG+TGG - chr5_4:4383744-4383763 Msa0831380:intron 50.0%
CCATTACCTCCACTAGTACC+GGG + chr5_4:4383756-4383775 None:intergenic 50.0%
ACTGGCTGAGGTATAGGAGA+AGG + chr5_4:4383789-4383808 None:intergenic 50.0%
TTCTCCTATACCTCAGCCAG+TGG - chr5_4:4383788-4383807 Msa0831380:intron 50.0%
! TCTACCACTGGCTGAGGTAT+AGG + chr5_4:4383795-4383814 None:intergenic 50.0%
!! CCGATTTTGAGGGATCAGCT+AGG - chr5_4:4383823-4383842 Msa0831380:intron 50.0%
TTGTTTGGAAGGATCGCCGA+TGG + chr5_4:4383869-4383888 None:intergenic 50.0%
CCCAGCTGCTAGAAGTTGTT+TGG + chr5_4:4383884-4383903 None:intergenic 50.0%
AACTTCTAGCAGCTGGGGAA+TGG - chr5_4:4383887-4383906 Msa0831380:intron 50.0%
CTGAATCTTCGGTCTAGTCG+TGG + chr5_4:4383936-4383955 None:intergenic 50.0%
GATCGCAGACGCTGAATCTT+CGG + chr5_4:4383947-4383966 None:intergenic 50.0%
GAAGATTCAGCGTCTGCGAT+CGG - chr5_4:4383946-4383965 Msa0831380:intron 50.0%
AAGATTCAGCGTCTGCGATC+GGG - chr5_4:4383947-4383966 Msa0831380:intron 50.0%
GCAGGTCCTCCATAAGACAT+CGG + chr5_4:4384254-4384273 None:intergenic 50.0%
TTATGGAGGACCTGCTGCAT+CGG - chr5_4:4384259-4384278 Msa0831380:CDS 50.0%
GAAGATGGATACAGCATGCC+AGG - chr5_4:4384284-4384303 Msa0831380:CDS 50.0%
CTGTCAGAACCATGAACACG+TGG + chr5_4:4384698-4384717 None:intergenic 50.0%
TTCTGACAGTGCGAAGTCTC+CGG - chr5_4:4384709-4384728 Msa0831380:intron 50.0%
TCATGCTCAGGGATTGTCTC+CGG + chr5_4:4384731-4384750 None:intergenic 50.0%
CTTCGCAGAACGGTAGTTGA+GGG + chr5_4:4384978-4384997 None:intergenic 50.0%
CAATAAGCGCCTTCGCAGAA+CGG + chr5_4:4384988-4385007 None:intergenic 50.0%
AAGAGAGGTCGTGCATTTGC+AGG - chr5_4:4385146-4385165 Msa0831380:CDS 50.0%
! GGTGTTCGCCTTTTCTCCTT+TGG + chr5_4:4385254-4385273 None:intergenic 50.0%
AGAAAAGGCGAACACCTGCT+TGG - chr5_4:4385258-4385277 Msa0831380:intron 50.0%
! TCAGACCACAGACCGGTTTA+TGG - chr5_4:4385454-4385473 Msa0831380:CDS 50.0%
TCGTTCCAGAATCCAAGTGG+AGG - chr5_4:4385537-4385556 Msa0831380:CDS 50.0%
CTCTCTATCCTATTCGCGGA+TGG - chr5_4:4385654-4385673 Msa0831380:CDS 50.0%
! TCGAGCATTAAAGGTGCGGT+TGG + chr5_4:4385779-4385798 None:intergenic 50.0%
CCTACCGAACTTACAAGGAG+CGG - chr5_4:4385842-4385861 Msa0831380:CDS 50.0%
CCAACCGCTCCTTGTAAGTT+CGG + chr5_4:4385849-4385868 None:intergenic 50.0%
CGAACTTACAAGGAGCGGTT+GGG - chr5_4:4385847-4385866 Msa0831380:CDS 50.0%
GAACTTACAAGGAGCGGTTG+GGG - chr5_4:4385848-4385867 Msa0831380:CDS 50.0%
ATGCCCATTCTCTCTCCCAA+AGG - chr5_4:4386079-4386098 Msa0831380:CDS 50.0%
TGCCCATTCTCTCTCCCAAA+GGG - chr5_4:4386080-4386099 Msa0831380:CDS 50.0%
! CATCCCTTTGGGAGAGAGAA+TGG + chr5_4:4386086-4386105 None:intergenic 50.0%
AGGCAGCAAGACATCCCTTT+GGG + chr5_4:4386097-4386116 None:intergenic 50.0%
AAGGCAGCAAGACATCCCTT+TGG + chr5_4:4386098-4386117 None:intergenic 50.0%
! TTGGCCAGACCGAAAGTACA+AGG - chr5_4:4386133-4386152 Msa0831380:intron 50.0%
TGTAATTACTCCCTCCGTCC+CGG - chr5_4:4386249-4386268 Msa0831380:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr5_4:4386266-4386285 None:intergenic 50.0%
GTCAATTATACCGGGACGGA+GGG - chr5_4:4386462-4386481 Msa0831380:CDS 50.0%
! ATTTGTTACTCCCTCCGTCC+CGG + chr5_4:4386475-4386494 None:intergenic 50.0%
GCAGGAACTCGAGTCAGGTT+AGG - chr5_4:4383051-4383070 Msa0831380:intron 55.0%
ATTACTGGGCGGGGATCTTC+CGG + chr5_4:4383243-4383262 None:intergenic 55.0%
AGTCTTCCCGGTACTAGTGG+AGG - chr5_4:4383747-4383766 Msa0831380:intron 55.0%
CCCGGTACTAGTGGAGGTAA+TGG - chr5_4:4383753-4383772 Msa0831380:intron 55.0%
AGTCGTGGTTGCACGGTTGA+AGG + chr5_4:4383921-4383940 None:intergenic 55.0%
TCGGTCTAGTCGTGGTTGCA+CGG + chr5_4:4383928-4383947 None:intergenic 55.0%
TCACTCGGTCGAGAGTCACT+TGG + chr5_4:4384047-4384066 None:intergenic 55.0%
TATGGAGGACCTGCTGCATC+GGG - chr5_4:4384260-4384279 Msa0831380:CDS 55.0%
CCTTCGCAGAACGGTAGTTG+AGG + chr5_4:4384979-4384998 None:intergenic 55.0%
CCTCAACTACCGTTCTGCGA+AGG - chr5_4:4384976-4384995 Msa0831380:intron 55.0%
GAGGTCGTGCATTTGCAGGA+TGG - chr5_4:4385150-4385169 Msa0831380:CDS 55.0%
GCCGAGGTTGAGTCAAACCA+TGG - chr5_4:4385487-4385506 Msa0831380:CDS 55.0%
CCGCTCCTTGTAAGTTCGGT+AGG + chr5_4:4385845-4385864 None:intergenic 55.0%
CCGAACTTACAAGGAGCGGT+TGG - chr5_4:4385846-4385865 Msa0831380:CDS 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr5_4:4386262-4386281 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG - chr5_4:4386461-4386480 Msa0831380:CDS 55.0%
CCATCTTCACCCGATGCAGC+AGG + chr5_4:4384272-4384291 None:intergenic 60.0%
CCTGCTGCATCGGGTGAAGA+TGG - chr5_4:4384269-4384288 Msa0831380:CDS 60.0%
CTTACAAGGAGCGGTTGGGG+AGG - chr5_4:4385851-4385870 Msa0831380:CDS 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr5_4:4386263-4386282 None:intergenic 60.0%
CGAGTCAGGTTAGGCGAGCG+AGG - chr5_4:4383060-4383079 Msa0831380:intron 65.0%
! ACAGCATGCCAGGGCGCTCA+AGG - chr5_4:4384294-4384313 Msa0831380:CDS 65.0%
AGGCTGTACCTTGAGCGCCC+TGG + chr5_4:4384305-4384324 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 4382109 4387648 4382109 ID=Msa0831380;Name=Msa0831380
chr5_4 mRNA 4382109 4387648 4382109 ID=Msa0831380-mRNA-1;Parent=Msa0831380;Name=Msa0831380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=380|1|1|1|0.75|0.69|13|556|622
chr5_4 exon 4382109 4382357 4382109 ID=Msa0831380-mRNA-1:exon:1797;Parent=Msa0831380-mRNA-1
chr5_4 exon 4382637 4382839 4382637 ID=Msa0831380-mRNA-1:exon:1796;Parent=Msa0831380-mRNA-1
chr5_4 exon 4382952 4383013 4382952 ID=Msa0831380-mRNA-1:exon:1795;Parent=Msa0831380-mRNA-1
chr5_4 exon 4384109 4384373 4384109 ID=Msa0831380-mRNA-1:exon:1794;Parent=Msa0831380-mRNA-1
chr5_4 exon 4384478 4384626 4384478 ID=Msa0831380-mRNA-1:exon:1793;Parent=Msa0831380-mRNA-1
chr5_4 exon 4384712 4384820 4384712 ID=Msa0831380-mRNA-1:exon:1792;Parent=Msa0831380-mRNA-1
chr5_4 exon 4385007 4385200 4385007 ID=Msa0831380-mRNA-1:exon:1791;Parent=Msa0831380-mRNA-1
chr5_4 exon 4385306 4386110 4385306 ID=Msa0831380-mRNA-1:exon:1790;Parent=Msa0831380-mRNA-1
chr5_4 exon 4386439 4386543 4386439 ID=Msa0831380-mRNA-1:exon:1789;Parent=Msa0831380-mRNA-1
chr5_4 exon 4386631 4386715 4386631 ID=Msa0831380-mRNA-1:exon:1788;Parent=Msa0831380-mRNA-1
chr5_4 exon 4386814 4386888 4386814 ID=Msa0831380-mRNA-1:exon:1787;Parent=Msa0831380-mRNA-1
chr5_4 exon 4387050 4387143 4387050 ID=Msa0831380-mRNA-1:exon:1786;Parent=Msa0831380-mRNA-1
chr5_4 exon 4387239 4387648 4387239 ID=Msa0831380-mRNA-1:exon:1785;Parent=Msa0831380-mRNA-1
chr5_4 five_prime_UTR 4387269 4387648 4387269 ID=Msa0831380-mRNA-1:five_prime_utr;Parent=Msa0831380-mRNA-1
chr5_4 CDS 4387239 4387268 4387239 ID=Msa0831380-mRNA-1:cds;Parent=Msa0831380-mRNA-1
chr5_4 CDS 4387050 4387143 4387050 ID=Msa0831380-mRNA-1:cds;Parent=Msa0831380-mRNA-1
chr5_4 CDS 4386814 4386888 4386814 ID=Msa0831380-mRNA-1:cds;Parent=Msa0831380-mRNA-1
chr5_4 CDS 4386631 4386715 4386631 ID=Msa0831380-mRNA-1:cds;Parent=Msa0831380-mRNA-1
chr5_4 CDS 4386439 4386543 4386439 ID=Msa0831380-mRNA-1:cds;Parent=Msa0831380-mRNA-1
chr5_4 CDS 4385306 4386110 4385306 ID=Msa0831380-mRNA-1:cds;Parent=Msa0831380-mRNA-1
chr5_4 CDS 4385007 4385200 4385007 ID=Msa0831380-mRNA-1:cds;Parent=Msa0831380-mRNA-1
chr5_4 CDS 4384712 4384820 4384712 ID=Msa0831380-mRNA-1:cds;Parent=Msa0831380-mRNA-1
chr5_4 CDS 4384478 4384626 4384478 ID=Msa0831380-mRNA-1:cds;Parent=Msa0831380-mRNA-1
chr5_4 CDS 4384151 4384373 4384151 ID=Msa0831380-mRNA-1:cds;Parent=Msa0831380-mRNA-1
chr5_4 three_prime_UTR 4384109 4384150 4384109 ID=Msa0831380-mRNA-1:three_prime_utr;Parent=Msa0831380-mRNA-1
chr5_4 three_prime_UTR 4382952 4383013 4382952 ID=Msa0831380-mRNA-1:three_prime_utr;Parent=Msa0831380-mRNA-1
chr5_4 three_prime_UTR 4382637 4382839 4382637 ID=Msa0831380-mRNA-1:three_prime_utr;Parent=Msa0831380-mRNA-1
chr5_4 three_prime_UTR 4382109 4382357 4382109 ID=Msa0831380-mRNA-1:three_prime_utr;Parent=Msa0831380-mRNA-1
Gene Sequence

>Msa0831380

ATGAGAGATGAGAATACCAAGAAAAGCAAGCTCTCATGGTCAAAGAAAATGGTCAGAAAATTCTTCAACATCAAATGCAAAACTGAGGACGCTACTCAACAAAGGGATGGTTTTGCTTCTGGAGGAGGTGGCTTGGAATACAGAAGCAGGAGTAGCTTGTCTGAGAGAGAGCCAAGCACAATCAAAAAGAGCAAAACAGAGAAATTTAGCAGGAACTCGAGTCAGGTTAGGCGAGCGAGGATGAACCTTGACCATCCTAGAATTATAGATGTCCATAACTACAGCATTTTTGTTGGTACATGGAATGTGGCCGGAAGATCCCCGCCCAGTAATTTGAGCATAAATGATTGGCTTCACGCCTCACCGCCTGCAGATATTTATGTTCTTGGATTTCAAGAGATTGTTCCCTTGAATGCTGGTAATATCTTAGGGGCAGAAGATAATGGCCCTGCCAAAAAATGGCTAGCTCTCATTGGAAATACTTTAAACAGTCTTCCCGGTACTAGTGGAGGTAATGGATACTATACGCCTTCTCCTATACCTCAGCCAGTGGTAGAATTGAATGCCGATTTTGAGGGATCAGCTAGGCAGAAGAATTCATCATTCTTCCATCGGCGATCCTTCCAAACAACTTCTAGCAGCTGGGGAATGGACAATGATCCTTCAACCGTGCAACCACGACTAGACCGAAGATTCAGCGTCTGCGATCGGGTAATTTTCGGTAACAGGAAAAGTGACTTTGATCCTAGTTTAAGATGGGGTTATAGGCCTAGTGACTATTCAAGGGCAAGTGACTCTCGACCGAGTGACTATTATACAAGGCCAAGTGACTCTCGACCGAGTGACTATTATTCAAGGGCAAGTGACTACTCTCGACCGAGTGACTATTATTCAAGGGCAAGCGACTACTCTCGACCAAGTGACTATTCAAGATGGGGTTCATCTGATGATGACAATGGCCTTGAAGATTCTCCGAGTACAGTCTTGTTTTCACCGATGTCTTATGGAGGACCTGCTGCATCGGGTGAAGATGGATACAGCATGCCAGGGCGCTCAAGGTACAGCCTTGTTGCAAGTAAACAAATGGTTGGAATCTTTCTTACCGTTTGGGTGAGAGGTGAATTGAAGGATCATGTTAAAAACATGAAAGTATCATGTGTTGGTAGAGGATTGATGGGTTATCTTGGAAATAAGGGATCCATCTCAATTAGCATGTCTCTGCATGAAACAAGCTTCTGCTTTATTTGTAGCCATTTAACCTCAGGACAGAAAGAAGGTGATGAACTAAGAAGAAACTCTGATGTACTGGAGATTCTTAAAAAGACAAGGTTTCCACGTGTTCATGGTTCTGACAGTGCGAAGTCTCCGGAGACAATCCCTGAGCATGATCGAATTATATGGCTTGGAGATTTAAATTATCGAATAGCCCTCAACTACCGTTCTGCGAAGGCGCTTATTGAGATGCAAAACTGGAGAGCATTGTTAGAGAATGACCAGTTGAGAATAGAGCAAAAGAGAGGTCGTGCATTTGCAGGATGGAAAGAAGGGAAGATTTATTTCCCTCCAACATATAAGTACTCAACCAATTCAGATAGGTATGCTGGAGATGATATGCATCCAAAGGAGAAAAGGCGAACACCTGCTTGGTGTGACCGTATTTTGTGGCATGGAGAAGGTCTACGTCAAATATCTTATGTACGCGGAGAATCAAGATTTTCAGACCACAGACCGGTTTATGGCTTATTTTGGGCCGAGGTTGAGTCAAACCATGGAAAATTGAAGAAAAGTATGAGCTGTTCTCGTTCCAGAATCCAAGTGGAGGAACTTTTACCATATTCCCACGGATACACTGAGCTAAATTTTTTCTGA
Protein sequence

>Msa0831380

MRDENTKKSKLSWSKKMVRKFFNIKCKTEDATQQRDGFASGGGGLEYRSRSSLSEREPSTIKKSKTEKFSRNSSQVRRARMNLDHPRIIDVHNYSIFVGTWNVAGRSPPSNLSINDWLHASPPADIYVLGFQEIVPLNAGNILGAEDNGPAKKWLALIGNTLNSLPGTSGGNGYYTPSPIPQPVVELNADFEGSARQKNSSFFHRRSFQTTSSSWGMDNDPSTVQPRLDRRFSVCDRVIFGNRKSDFDPSLRWGYRPSDYSRASDSRPSDYYTRPSDSRPSDYYSRASDYSRPSDYYSRASDYSRPSDYSRWGSSDDDNGLEDSPSTVLFSPMSYGGPAASGEDGYSMPGRSRYSLVASKQMVGIFLTVWVRGELKDHVKNMKVSCVGRGLMGYLGNKGSISISMSLHETSFCFICSHLTSGQKEGDELRRNSDVLEILKKTRFPRVHGSDSAKSPETIPEHDRIIWLGDLNYRIALNYRSAKALIEMQNWRALLENDQLRIEQKRGRAFAGWKEGKIYFPPTYKYSTNSDRYAGDDMHPKEKRRTPAWCDRILWHGEGLRQISYVRGESRFSDHRPVYGLFWAEVESNHGKLKKSMSCSRSRIQVEELLPYSHGYTELNFF*