Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794160 | AFK43651.1 | 95.767 | 189 | 6 | 2 | 1 | 188 | 1 | 188 | 1.78e-118 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794160 | sp|P35055|HEM6_SOYBN | 63.830 | 188 | 53 | 4 | 1 | 188 | 2 | 174 | 5.54e-71 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794160 | I3STQ9 | 95.767 | 189 | 6 | 2 | 1 | 188 | 1 | 188 | 8.51e-119 | 344 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035050 | Msa0794160 | 0.816338 | 5.821100e-52 | -8.615850e-47 |
| Msa0745250 | Msa0794160 | 0.890216 | 1.204255e-73 | -8.615850e-47 |
| Msa0794160 | Msa0826800 | 0.929964 | 3.258907e-93 | -8.615850e-47 |
| Msa0794160 | Msa0865520 | 0.865125 | 7.409051e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794160 | MtrunA17_Chr5g0448441 | 95.767 | 189 | 6 | 2 | 1 | 188 | 1 | 188 | 2.15e-118 | 341 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794160 | AT4G03205.1 | 62.011 | 179 | 61 | 3 | 11 | 188 | 3 | 175 | 5.14e-66 | 203 |
| Msa0794160 | AT4G03205.2 | 62.011 | 179 | 61 | 3 | 11 | 188 | 3 | 175 | 7.28e-66 | 202 |
| Msa0794160 | AT1G03475.1 | 62.921 | 178 | 51 | 4 | 21 | 188 | 3 | 175 | 4.59e-60 | 192 |
Find 44 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGTGTAGTGAGTGATTT+TGG | 0.161536 | 5_3:-5982232 | None:intergenic |
| GTTAATGTTTCTGTTGTTTA+TGG | 0.239575 | 5_3:+5982568 | Msa0794160:CDS |
| GTATCGGGGCGTTCTGATTC+TGG | 0.283725 | 5_3:-5982328 | None:intergenic |
| TCTTCAAGATGGTGCTGTTT+GGG | 0.316342 | 5_3:+5982534 | Msa0794160:CDS |
| GCTGCTAAGGGCGCTGCAGC+GGG | 0.323359 | 5_3:+5982616 | Msa0794160:CDS |
| TCAAGACCTGGTGGTGGTGG+TGG | 0.349702 | 5_3:+5982499 | Msa0794160:CDS |
| TTCTTCAAGATGGTGCTGTT+TGG | 0.354033 | 5_3:+5982533 | Msa0794160:CDS |
| GAAAGTTTAAAGAAGATGTT+TGG | 0.390331 | 5_3:+5982476 | Msa0794160:CDS |
| AAAACTTACTGAGCTAATTC+CGG | 0.400140 | 5_3:-5982680 | None:intergenic |
| TGATGCTTATCGTGCTGCTA+AGG | 0.424169 | 5_3:+5982603 | Msa0794160:CDS |
| CAAGACCTGGTGGTGGTGGT+GGG | 0.438924 | 5_3:+5982500 | Msa0794160:CDS |
| TGCTGCTAAGGGCGCTGCAG+CGG | 0.453118 | 5_3:+5982615 | Msa0794160:CDS |
| TGGTCAAGACCTGGTGGTGG+TGG | 0.468637 | 5_3:+5982496 | Msa0794160:CDS |
| AGGTCCCGGCTTCTGATCAC+TGG | 0.488605 | 5_3:-5982641 | None:intergenic |
| GGTTCCAGTGATCAGAAGCC+GGG | 0.492346 | 5_3:+5982637 | Msa0794160:CDS |
| CTTCTCGAATCGAGCTCTAA+CGG | 0.498945 | 5_3:-5982395 | None:intergenic |
| AGAGACATTGTCAGCAACAT+AGG | 0.508643 | 5_3:+5983472 | Msa0794160:CDS |
| ATGCCGCGGAGAAATGTATC+GGG | 0.509233 | 5_3:-5982343 | None:intergenic |
| GATGCTTATCGTGCTGCTAA+GGG | 0.511744 | 5_3:+5982604 | Msa0794160:CDS |
| AAGGGAGTGATGGAGTAAGA+AGG | 0.517461 | 5_3:-5982157 | None:intergenic |
| ATTAGTAGAGTTCTTCAAGA+TGG | 0.527187 | 5_3:+5982523 | Msa0794160:CDS |
| GGGTTCCAGTGATCAGAAGC+CGG | 0.529802 | 5_3:+5982636 | Msa0794160:CDS |
| TTAGCAGCACGATAAGCATC+AGG | 0.529867 | 5_3:-5982601 | None:intergenic |
| GATGCCGCGGAGAAATGTAT+CGG | 0.549690 | 5_3:-5982344 | None:intergenic |
| TTGTTATGACTCGTTGAAAG+TGG | 0.563289 | 5_3:-5982276 | None:intergenic |
| CTAATCCCACCACCACCACC+AGG | 0.564042 | 5_3:-5982505 | None:intergenic |
| TGTGAATGTGAAGGGAGTGA+TGG | 0.577708 | 5_3:-5982167 | None:intergenic |
| ATTGAAGAAGCTGATGGTGG+TGG | 0.583194 | 5_3:+5982454 | Msa0794160:CDS |
| TTGAAAGTGGTGTGAAGATG+TGG | 0.605973 | 5_3:-5982263 | None:intergenic |
| TTTGAAGATGTGAATGTGAA+GGG | 0.606835 | 5_3:-5982175 | None:intergenic |
| CTCCGTCGTTGTCGATGCCG+CGG | 0.607776 | 5_3:-5982357 | None:intergenic |
| GGTGCTGTTTGGGAGAAAGC+TGG | 0.617824 | 5_3:+5982544 | Msa0794160:CDS |
| GTTTGGTCAAGACCTGGTGG+TGG | 0.634333 | 5_3:+5982493 | Msa0794160:CDS |
| AGCTCTAACGGAAGATGCCG+CGG | 0.645789 | 5_3:-5982383 | None:intergenic |
| GAAGATGTTTGGTCAAGACC+TGG | 0.652074 | 5_3:+5982487 | Msa0794160:CDS |
| TCTAACGGAAGATGCCGCGG+TGG | 0.668976 | 5_3:-5982380 | None:intergenic |
| CTCCGCGGCATCGACAACGA+CGG | 0.669627 | 5_3:+5982355 | Msa0794160:CDS |
| GCAGCACGATAAGCATCAGG+TGG | 0.684090 | 5_3:-5982598 | None:intergenic |
| CGACAACGACGGAGCCACCG+CGG | 0.685176 | 5_3:+5982366 | Msa0794160:CDS |
| GCAATTGAAGAAGCTGATGG+TGG | 0.716899 | 5_3:+5982451 | Msa0794160:CDS |
| AATGCAATTGAAGAAGCTGA+TGG | 0.722953 | 5_3:+5982448 | Msa0794160:CDS |
| CGCCCCGATACATTTCTCCG+CGG | 0.735875 | 5_3:+5982340 | Msa0794160:CDS |
| GCTGATATAGAAATTGTACA+CGG | 0.741835 | 5_3:-5982133 | None:intergenic |
| GATGTTTGGTCAAGACCTGG+TGG | 0.753790 | 5_3:+5982490 | Msa0794160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTATAAACTTGTTA+AGG | - | chr5_3:5983169-5983188 | None:intergenic | 10.0% |
| !!! | TATTATTTATAAACTTGTTA+AGG | - | chr5_3:5983169-5983188 | None:intergenic | 10.0% |
| !! | ATAAAATGTTGGAATATAAT+TGG | - | chr5_3:5982736-5982755 | None:intergenic | 15.0% |
| !! | ATGAATGAATTATAAAATGT+TGG | - | chr5_3:5982747-5982766 | None:intergenic | 15.0% |
| !! | GTGCAAATTAAAAAATTATT+TGG | + | chr5_3:5983264-5983283 | Msa0794160:intron | 15.0% |
| !! | ATAAAATGTTGGAATATAAT+TGG | - | chr5_3:5982736-5982755 | None:intergenic | 15.0% |
| !! | ATGAATGAATTATAAAATGT+TGG | - | chr5_3:5982747-5982766 | None:intergenic | 15.0% |
| !! | GTGCAAATTAAAAAATTATT+TGG | + | chr5_3:5983264-5983283 | Msa0794160:intron | 15.0% |
| !! | GATAGATATAAATGTTAGTT+TGG | + | chr5_3:5982772-5982791 | Msa0794160:intron | 20.0% |
| !!! | GATTTTTGAATTCATTGATT+TGG | + | chr5_3:5982814-5982833 | Msa0794160:intron | 20.0% |
| !! | AAATATATGCTAAATCACTT+TGG | - | chr5_3:5982858-5982877 | None:intergenic | 20.0% |
| !! | AAAGTGATTTAGCATATATT+TGG | + | chr5_3:5982857-5982876 | Msa0794160:intron | 20.0% |
| !!! | ATAATTGATTTTGTCATGTT+TGG | + | chr5_3:5982899-5982918 | Msa0794160:intron | 20.0% |
| !! | TTTCATAAGCTCAAAAATAA+GGG | - | chr5_3:5983054-5983073 | None:intergenic | 20.0% |
| !!! | TTTTCATAAGCTCAAAAATA+AGG | - | chr5_3:5983055-5983074 | None:intergenic | 20.0% |
| !! | AAAAATCATATAGTGACTAA+GGG | - | chr5_3:5983228-5983247 | None:intergenic | 20.0% |
| !! | AAAAAATCATATAGTGACTA+AGG | - | chr5_3:5983229-5983248 | None:intergenic | 20.0% |
| !!! | TCACTATATGATTTTTTGTT+TGG | + | chr5_3:5983232-5983251 | Msa0794160:intron | 20.0% |
| !!! | CACTATATGATTTTTTGTTT+GGG | + | chr5_3:5983233-5983252 | Msa0794160:intron | 20.0% |
| !!! | ATTTTTTAATTTGCACAGAT+TGG | - | chr5_3:5983260-5983279 | None:intergenic | 20.0% |
| !! | TAAAATTGCTATAAAATTGC+AGG | + | chr5_3:5983382-5983401 | Msa0794160:intron | 20.0% |
| !! | AAAATTGCTATAAAATTGCA+GGG | + | chr5_3:5983383-5983402 | Msa0794160:intron | 20.0% |
| !! | TAGTTATAACGGTTTATATA+TGG | - | chr5_3:5983416-5983435 | None:intergenic | 20.0% |
| !! | GATAGATATAAATGTTAGTT+TGG | + | chr5_3:5982772-5982791 | Msa0794160:intron | 20.0% |
| !!! | GATTTTTGAATTCATTGATT+TGG | + | chr5_3:5982814-5982833 | Msa0794160:intron | 20.0% |
| !! | AAATATATGCTAAATCACTT+TGG | - | chr5_3:5982858-5982877 | None:intergenic | 20.0% |
| !! | AAAGTGATTTAGCATATATT+TGG | + | chr5_3:5982857-5982876 | Msa0794160:intron | 20.0% |
| !!! | ATAATTGATTTTGTCATGTT+TGG | + | chr5_3:5982899-5982918 | Msa0794160:intron | 20.0% |
| !! | TTTCATAAGCTCAAAAATAA+GGG | - | chr5_3:5983054-5983073 | None:intergenic | 20.0% |
| !!! | TTTTCATAAGCTCAAAAATA+AGG | - | chr5_3:5983055-5983074 | None:intergenic | 20.0% |
| !! | AAAAATCATATAGTGACTAA+GGG | - | chr5_3:5983228-5983247 | None:intergenic | 20.0% |
| !! | AAAAAATCATATAGTGACTA+AGG | - | chr5_3:5983229-5983248 | None:intergenic | 20.0% |
| !!! | TCACTATATGATTTTTTGTT+TGG | + | chr5_3:5983232-5983251 | Msa0794160:intron | 20.0% |
| !!! | CACTATATGATTTTTTGTTT+GGG | + | chr5_3:5983233-5983252 | Msa0794160:intron | 20.0% |
| !!! | ATTTTTTAATTTGCACAGAT+TGG | - | chr5_3:5983260-5983279 | None:intergenic | 20.0% |
| !! | TAAAATTGCTATAAAATTGC+AGG | + | chr5_3:5983382-5983401 | Msa0794160:intron | 20.0% |
| !! | AAAATTGCTATAAAATTGCA+GGG | + | chr5_3:5983383-5983402 | Msa0794160:intron | 20.0% |
| !! | TAGTTATAACGGTTTATATA+TGG | - | chr5_3:5983416-5983435 | None:intergenic | 20.0% |
| !! | TGTTTCTTTTTCTATGGAAA+CGG | - | chr5_3:5982308-5982327 | None:intergenic | 25.0% |
| ! | GAAAGTTTAAAGAAGATGTT+TGG | + | chr5_3:5982476-5982495 | Msa0794160:CDS | 25.0% |
| !! | GTTAATGTTTCTGTTGTTTA+TGG | + | chr5_3:5982568-5982587 | Msa0794160:CDS | 25.0% |
| ! | GTAATTGATACTCAAAATGA+TGG | - | chr5_3:5982714-5982733 | None:intergenic | 25.0% |
| !!! | TAAATGTTAGTTTGGTTTTG+CGG | + | chr5_3:5982780-5982799 | Msa0794160:intron | 25.0% |
| ! | GATTTGGATTAAAATTGAGT+TGG | + | chr5_3:5982830-5982849 | Msa0794160:intron | 25.0% |
| !! | AATTGATTCTACTTGAAGTT+GGG | + | chr5_3:5982947-5982966 | Msa0794160:intron | 25.0% |
| ! | GAAAAATAAGCCAATCAAAA+CGG | + | chr5_3:5983027-5983046 | Msa0794160:intron | 25.0% |
| !! | TAACGGTTTATATATGGTTT+TGG | - | chr5_3:5983410-5983429 | None:intergenic | 25.0% |
| ! | ATCCTTACTAGTAGTTATAA+CGG | - | chr5_3:5983427-5983446 | None:intergenic | 25.0% |
| !! | TGTTTCTTTTTCTATGGAAA+CGG | - | chr5_3:5982308-5982327 | None:intergenic | 25.0% |
| ! | GAAAGTTTAAAGAAGATGTT+TGG | + | chr5_3:5982476-5982495 | Msa0794160:CDS | 25.0% |
| !! | GTTAATGTTTCTGTTGTTTA+TGG | + | chr5_3:5982568-5982587 | Msa0794160:CDS | 25.0% |
| ! | GTAATTGATACTCAAAATGA+TGG | - | chr5_3:5982714-5982733 | None:intergenic | 25.0% |
| !!! | TAAATGTTAGTTTGGTTTTG+CGG | + | chr5_3:5982780-5982799 | Msa0794160:intron | 25.0% |
| ! | GATTTGGATTAAAATTGAGT+TGG | + | chr5_3:5982830-5982849 | Msa0794160:intron | 25.0% |
| !! | AATTGATTCTACTTGAAGTT+GGG | + | chr5_3:5982947-5982966 | Msa0794160:intron | 25.0% |
| ! | GAAAAATAAGCCAATCAAAA+CGG | + | chr5_3:5983027-5983046 | Msa0794160:intron | 25.0% |
| !! | TAACGGTTTATATATGGTTT+TGG | - | chr5_3:5983410-5983429 | None:intergenic | 25.0% |
| ! | ATCCTTACTAGTAGTTATAA+CGG | - | chr5_3:5983427-5983446 | None:intergenic | 25.0% |
| GCTGATATAGAAATTGTACA+CGG | - | chr5_3:5982136-5982155 | None:intergenic | 30.0% | |
| TTTGAAGATGTGAATGTGAA+GGG | - | chr5_3:5982178-5982197 | None:intergenic | 30.0% | |
| !! | TTTTGAAGATGTGAATGTGA+AGG | - | chr5_3:5982179-5982198 | None:intergenic | 30.0% |
| ! | TTTGTGTAGTGAGTGATTTT+GGG | - | chr5_3:5982234-5982253 | None:intergenic | 30.0% |
| ! | TTCTGGTGTTTCTTTTTCTA+TGG | - | chr5_3:5982314-5982333 | None:intergenic | 30.0% |
| ATTAGTAGAGTTCTTCAAGA+TGG | + | chr5_3:5982523-5982542 | Msa0794160:CDS | 30.0% | |
| AAAACTTACTGAGCTAATTC+CGG | - | chr5_3:5982683-5982702 | None:intergenic | 30.0% | |
| ACTTCAAGTAGAATCAATTC+TGG | - | chr5_3:5982946-5982965 | None:intergenic | 30.0% | |
| ! | GAATTGATTCTACTTGAAGT+TGG | + | chr5_3:5982946-5982965 | Msa0794160:intron | 30.0% |
| ATACATGGCTCAATAAACAA+CGG | + | chr5_3:5983304-5983323 | Msa0794160:intron | 30.0% | |
| ! | ACAACGGTTTTTGAATTTGA+AGG | + | chr5_3:5983320-5983339 | Msa0794160:intron | 30.0% |
| ! | CAACGGTTTTTGAATTTGAA+GGG | + | chr5_3:5983321-5983340 | Msa0794160:intron | 30.0% |
| TCCATACGAAAAAACTTACA+AGG | + | chr5_3:5983350-5983369 | Msa0794160:intron | 30.0% | |
| !!! | TCCTTGTAAGTTTTTTCGTA+TGG | - | chr5_3:5983354-5983373 | None:intergenic | 30.0% |
| AACCGTTATAACTACTAGTA+AGG | + | chr5_3:5983422-5983441 | Msa0794160:intron | 30.0% | |
| ACATCCATACAAGATTAAAC+AGG | - | chr5_3:5983450-5983469 | None:intergenic | 30.0% | |
| GCTGATATAGAAATTGTACA+CGG | - | chr5_3:5982136-5982155 | None:intergenic | 30.0% | |
| TTTGAAGATGTGAATGTGAA+GGG | - | chr5_3:5982178-5982197 | None:intergenic | 30.0% | |
| !! | TTTTGAAGATGTGAATGTGA+AGG | - | chr5_3:5982179-5982198 | None:intergenic | 30.0% |
| ! | TTTGTGTAGTGAGTGATTTT+GGG | - | chr5_3:5982234-5982253 | None:intergenic | 30.0% |
| ! | TTCTGGTGTTTCTTTTTCTA+TGG | - | chr5_3:5982314-5982333 | None:intergenic | 30.0% |
| ATTAGTAGAGTTCTTCAAGA+TGG | + | chr5_3:5982523-5982542 | Msa0794160:CDS | 30.0% | |
| AAAACTTACTGAGCTAATTC+CGG | - | chr5_3:5982683-5982702 | None:intergenic | 30.0% | |
| ACTTCAAGTAGAATCAATTC+TGG | - | chr5_3:5982946-5982965 | None:intergenic | 30.0% | |
| ! | GAATTGATTCTACTTGAAGT+TGG | + | chr5_3:5982946-5982965 | Msa0794160:intron | 30.0% |
| ATACATGGCTCAATAAACAA+CGG | + | chr5_3:5983304-5983323 | Msa0794160:intron | 30.0% | |
| ! | ACAACGGTTTTTGAATTTGA+AGG | + | chr5_3:5983320-5983339 | Msa0794160:intron | 30.0% |
| ! | CAACGGTTTTTGAATTTGAA+GGG | + | chr5_3:5983321-5983340 | Msa0794160:intron | 30.0% |
| TCCATACGAAAAAACTTACA+AGG | + | chr5_3:5983350-5983369 | Msa0794160:intron | 30.0% | |
| !!! | TCCTTGTAAGTTTTTTCGTA+TGG | - | chr5_3:5983354-5983373 | None:intergenic | 30.0% |
| AACCGTTATAACTACTAGTA+AGG | + | chr5_3:5983422-5983441 | Msa0794160:intron | 30.0% | |
| ACATCCATACAAGATTAAAC+AGG | - | chr5_3:5983450-5983469 | None:intergenic | 30.0% | |
| ! | TTGTGTAGTGAGTGATTTTG+GGG | - | chr5_3:5982233-5982252 | None:intergenic | 35.0% |
| ! | GTTTGTGTAGTGAGTGATTT+TGG | - | chr5_3:5982235-5982254 | None:intergenic | 35.0% |
| TTGTTATGACTCGTTGAAAG+TGG | - | chr5_3:5982279-5982298 | None:intergenic | 35.0% | |
| AATGCAATTGAAGAAGCTGA+TGG | + | chr5_3:5982448-5982467 | Msa0794160:CDS | 35.0% | |
| TCAAGTAGAATCAATTCTGG+AGG | - | chr5_3:5982943-5982962 | None:intergenic | 35.0% | |
| !! | AAATAAGGGACCGTTTTGAT+TGG | - | chr5_3:5983040-5983059 | None:intergenic | 35.0% |
| GGATCCTGTTTAATCTTGTA+TGG | + | chr5_3:5983443-5983462 | Msa0794160:intron | 35.0% | |
| ! | TTGTGTAGTGAGTGATTTTG+GGG | - | chr5_3:5982233-5982252 | None:intergenic | 35.0% |
| ! | GTTTGTGTAGTGAGTGATTT+TGG | - | chr5_3:5982235-5982254 | None:intergenic | 35.0% |
| TTGTTATGACTCGTTGAAAG+TGG | - | chr5_3:5982279-5982298 | None:intergenic | 35.0% | |
| AATGCAATTGAAGAAGCTGA+TGG | + | chr5_3:5982448-5982467 | Msa0794160:CDS | 35.0% | |
| TCAAGTAGAATCAATTCTGG+AGG | - | chr5_3:5982943-5982962 | None:intergenic | 35.0% | |
| !! | AAATAAGGGACCGTTTTGAT+TGG | - | chr5_3:5983040-5983059 | None:intergenic | 35.0% |
| GGATCCTGTTTAATCTTGTA+TGG | + | chr5_3:5983443-5983462 | Msa0794160:intron | 35.0% | |
| ! | TGTGTAGTGAGTGATTTTGG+GGG | - | chr5_3:5982232-5982251 | None:intergenic | 40.0% |
| !! | GTGTGAAGATGTGGTTTTAC+GGG | - | chr5_3:5982257-5982276 | None:intergenic | 40.0% |
| !! | GGTGTGAAGATGTGGTTTTA+CGG | - | chr5_3:5982258-5982277 | None:intergenic | 40.0% |
| TTGAAAGTGGTGTGAAGATG+TGG | - | chr5_3:5982266-5982285 | None:intergenic | 40.0% | |
| !! | TTCTTCAAGATGGTGCTGTT+TGG | + | chr5_3:5982533-5982552 | Msa0794160:CDS | 40.0% |
| !! | TCTTCAAGATGGTGCTGTTT+GGG | + | chr5_3:5982534-5982553 | Msa0794160:CDS | 40.0% |
| AGTGACTAAGGGTCTGTATT+GGG | - | chr5_3:5983217-5983236 | None:intergenic | 40.0% | |
| TAGTGACTAAGGGTCTGTAT+TGG | - | chr5_3:5983218-5983237 | None:intergenic | 40.0% | |
| TTAGTCCCTAACGTCATACA+TGG | + | chr5_3:5983289-5983308 | Msa0794160:intron | 40.0% | |
| TTGAGCCATGTATGACGTTA+GGG | - | chr5_3:5983297-5983316 | None:intergenic | 40.0% | |
| ATTGAGCCATGTATGACGTT+AGG | - | chr5_3:5983298-5983317 | None:intergenic | 40.0% | |
| AGAGACATTGTCAGCAACAT+AGG | + | chr5_3:5983472-5983491 | Msa0794160:CDS | 40.0% | |
| ! | TGTGTAGTGAGTGATTTTGG+GGG | - | chr5_3:5982232-5982251 | None:intergenic | 40.0% |
| !! | GTGTGAAGATGTGGTTTTAC+GGG | - | chr5_3:5982257-5982276 | None:intergenic | 40.0% |
| !! | GGTGTGAAGATGTGGTTTTA+CGG | - | chr5_3:5982258-5982277 | None:intergenic | 40.0% |
| TTGAAAGTGGTGTGAAGATG+TGG | - | chr5_3:5982266-5982285 | None:intergenic | 40.0% | |
| !! | TTCTTCAAGATGGTGCTGTT+TGG | + | chr5_3:5982533-5982552 | Msa0794160:CDS | 40.0% |
| !! | TCTTCAAGATGGTGCTGTTT+GGG | + | chr5_3:5982534-5982553 | Msa0794160:CDS | 40.0% |
| AGTGACTAAGGGTCTGTATT+GGG | - | chr5_3:5983217-5983236 | None:intergenic | 40.0% | |
| TAGTGACTAAGGGTCTGTAT+TGG | - | chr5_3:5983218-5983237 | None:intergenic | 40.0% | |
| TTAGTCCCTAACGTCATACA+TGG | + | chr5_3:5983289-5983308 | Msa0794160:intron | 40.0% | |
| TTGAGCCATGTATGACGTTA+GGG | - | chr5_3:5983297-5983316 | None:intergenic | 40.0% | |
| ATTGAGCCATGTATGACGTT+AGG | - | chr5_3:5983298-5983317 | None:intergenic | 40.0% | |
| AGAGACATTGTCAGCAACAT+AGG | + | chr5_3:5983472-5983491 | Msa0794160:CDS | 40.0% | |
| ! | AAGGGAGTGATGGAGTAAGA+AGG | - | chr5_3:5982160-5982179 | None:intergenic | 45.0% |
| TGTGAATGTGAAGGGAGTGA+TGG | - | chr5_3:5982170-5982189 | None:intergenic | 45.0% | |
| ! | CTTCTCGAATCGAGCTCTAA+CGG | - | chr5_3:5982398-5982417 | None:intergenic | 45.0% |
| GCAATTGAAGAAGCTGATGG+TGG | + | chr5_3:5982451-5982470 | Msa0794160:CDS | 45.0% | |
| !! | ATTGAAGAAGCTGATGGTGG+TGG | + | chr5_3:5982454-5982473 | Msa0794160:CDS | 45.0% |
| GAAGATGTTTGGTCAAGACC+TGG | + | chr5_3:5982487-5982506 | Msa0794160:CDS | 45.0% | |
| TTAGCAGCACGATAAGCATC+AGG | - | chr5_3:5982604-5982623 | None:intergenic | 45.0% | |
| ! | TGATGCTTATCGTGCTGCTA+AGG | + | chr5_3:5982603-5982622 | Msa0794160:CDS | 45.0% |
| ! | GATGCTTATCGTGCTGCTAA+GGG | + | chr5_3:5982604-5982623 | Msa0794160:CDS | 45.0% |
| CTAATTCCGGCAGCGAAAAA+CGG | - | chr5_3:5982670-5982689 | None:intergenic | 45.0% | |
| ! | AAGGGAGTGATGGAGTAAGA+AGG | - | chr5_3:5982160-5982179 | None:intergenic | 45.0% |
| TGTGAATGTGAAGGGAGTGA+TGG | - | chr5_3:5982170-5982189 | None:intergenic | 45.0% | |
| ! | CTTCTCGAATCGAGCTCTAA+CGG | - | chr5_3:5982398-5982417 | None:intergenic | 45.0% |
| GCAATTGAAGAAGCTGATGG+TGG | + | chr5_3:5982451-5982470 | Msa0794160:CDS | 45.0% | |
| !! | ATTGAAGAAGCTGATGGTGG+TGG | + | chr5_3:5982454-5982473 | Msa0794160:CDS | 45.0% |
| GAAGATGTTTGGTCAAGACC+TGG | + | chr5_3:5982487-5982506 | Msa0794160:CDS | 45.0% | |
| TTAGCAGCACGATAAGCATC+AGG | - | chr5_3:5982604-5982623 | None:intergenic | 45.0% | |
| ! | TGATGCTTATCGTGCTGCTA+AGG | + | chr5_3:5982603-5982622 | Msa0794160:CDS | 45.0% |
| ! | GATGCTTATCGTGCTGCTAA+GGG | + | chr5_3:5982604-5982623 | Msa0794160:CDS | 45.0% |
| CTAATTCCGGCAGCGAAAAA+CGG | - | chr5_3:5982670-5982689 | None:intergenic | 45.0% | |
| ATGCCGCGGAGAAATGTATC+GGG | - | chr5_3:5982346-5982365 | None:intergenic | 50.0% | |
| GATGCCGCGGAGAAATGTAT+CGG | - | chr5_3:5982347-5982366 | None:intergenic | 50.0% | |
| GATGTTTGGTCAAGACCTGG+TGG | + | chr5_3:5982490-5982509 | Msa0794160:CDS | 50.0% | |
| ATGCCGCGGAGAAATGTATC+GGG | - | chr5_3:5982346-5982365 | None:intergenic | 50.0% | |
| GATGCCGCGGAGAAATGTAT+CGG | - | chr5_3:5982347-5982366 | None:intergenic | 50.0% | |
| GATGTTTGGTCAAGACCTGG+TGG | + | chr5_3:5982490-5982509 | Msa0794160:CDS | 50.0% | |
| ! | GTATCGGGGCGTTCTGATTC+TGG | - | chr5_3:5982331-5982350 | None:intergenic | 55.0% |
| TGCCGCGGAGAAATGTATCG+GGG | - | chr5_3:5982345-5982364 | None:intergenic | 55.0% | |
| ! | AGCTCTAACGGAAGATGCCG+CGG | - | chr5_3:5982386-5982405 | None:intergenic | 55.0% |
| GTTTGGTCAAGACCTGGTGG+TGG | + | chr5_3:5982493-5982512 | Msa0794160:CDS | 55.0% | |
| !! | GGTGCTGTTTGGGAGAAAGC+TGG | + | chr5_3:5982544-5982563 | Msa0794160:CDS | 55.0% |
| GCAGCACGATAAGCATCAGG+TGG | - | chr5_3:5982601-5982620 | None:intergenic | 55.0% | |
| GGGTTCCAGTGATCAGAAGC+CGG | + | chr5_3:5982636-5982655 | Msa0794160:CDS | 55.0% | |
| GGTTCCAGTGATCAGAAGCC+GGG | + | chr5_3:5982637-5982656 | Msa0794160:CDS | 55.0% | |
| GCGAAAAACGGAACAGGTCC+CGG | - | chr5_3:5982658-5982677 | None:intergenic | 55.0% | |
| !! | CCTGTTCCGTTTTTCGCTGC+CGG | + | chr5_3:5982661-5982680 | Msa0794160:CDS | 55.0% |
| ! | GTATCGGGGCGTTCTGATTC+TGG | - | chr5_3:5982331-5982350 | None:intergenic | 55.0% |
| TGCCGCGGAGAAATGTATCG+GGG | - | chr5_3:5982345-5982364 | None:intergenic | 55.0% | |
| ! | AGCTCTAACGGAAGATGCCG+CGG | - | chr5_3:5982386-5982405 | None:intergenic | 55.0% |
| GTTTGGTCAAGACCTGGTGG+TGG | + | chr5_3:5982493-5982512 | Msa0794160:CDS | 55.0% | |
| !! | GGTGCTGTTTGGGAGAAAGC+TGG | + | chr5_3:5982544-5982563 | Msa0794160:CDS | 55.0% |
| GCAGCACGATAAGCATCAGG+TGG | - | chr5_3:5982601-5982620 | None:intergenic | 55.0% | |
| GGGTTCCAGTGATCAGAAGC+CGG | + | chr5_3:5982636-5982655 | Msa0794160:CDS | 55.0% | |
| GGTTCCAGTGATCAGAAGCC+GGG | + | chr5_3:5982637-5982656 | Msa0794160:CDS | 55.0% | |
| GCGAAAAACGGAACAGGTCC+CGG | - | chr5_3:5982658-5982677 | None:intergenic | 55.0% | |
| !! | CCTGTTCCGTTTTTCGCTGC+CGG | + | chr5_3:5982661-5982680 | Msa0794160:CDS | 55.0% |
| CGCCCCGATACATTTCTCCG+CGG | + | chr5_3:5982340-5982359 | Msa0794160:CDS | 60.0% | |
| TCTAACGGAAGATGCCGCGG+TGG | - | chr5_3:5982383-5982402 | None:intergenic | 60.0% | |
| !! | TGGTCAAGACCTGGTGGTGG+TGG | + | chr5_3:5982496-5982515 | Msa0794160:CDS | 60.0% |
| !! | TCAAGACCTGGTGGTGGTGG+TGG | + | chr5_3:5982499-5982518 | Msa0794160:CDS | 60.0% |
| !! | CAAGACCTGGTGGTGGTGGT+GGG | + | chr5_3:5982500-5982519 | Msa0794160:CDS | 60.0% |
| CTAATCCCACCACCACCACC+AGG | - | chr5_3:5982508-5982527 | None:intergenic | 60.0% | |
| AGGTCCCGGCTTCTGATCAC+TGG | - | chr5_3:5982644-5982663 | None:intergenic | 60.0% | |
| CCGGCAGCGAAAAACGGAAC+AGG | - | chr5_3:5982664-5982683 | None:intergenic | 60.0% | |
| CGCCCCGATACATTTCTCCG+CGG | + | chr5_3:5982340-5982359 | Msa0794160:CDS | 60.0% | |
| TCTAACGGAAGATGCCGCGG+TGG | - | chr5_3:5982383-5982402 | None:intergenic | 60.0% | |
| !! | TGGTCAAGACCTGGTGGTGG+TGG | + | chr5_3:5982496-5982515 | Msa0794160:CDS | 60.0% |
| !! | TCAAGACCTGGTGGTGGTGG+TGG | + | chr5_3:5982499-5982518 | Msa0794160:CDS | 60.0% |
| !! | CAAGACCTGGTGGTGGTGGT+GGG | + | chr5_3:5982500-5982519 | Msa0794160:CDS | 60.0% |
| CTAATCCCACCACCACCACC+AGG | - | chr5_3:5982508-5982527 | None:intergenic | 60.0% | |
| AGGTCCCGGCTTCTGATCAC+TGG | - | chr5_3:5982644-5982663 | None:intergenic | 60.0% | |
| CCGGCAGCGAAAAACGGAAC+AGG | - | chr5_3:5982664-5982683 | None:intergenic | 60.0% | |
| !! | CTCCGCGGCATCGACAACGA+CGG | + | chr5_3:5982355-5982374 | Msa0794160:CDS | 65.0% |
| CTCCGTCGTTGTCGATGCCG+CGG | - | chr5_3:5982360-5982379 | None:intergenic | 65.0% | |
| !! | TGCTGCTAAGGGCGCTGCAG+CGG | + | chr5_3:5982615-5982634 | Msa0794160:CDS | 65.0% |
| !! | CTCCGCGGCATCGACAACGA+CGG | + | chr5_3:5982355-5982374 | Msa0794160:CDS | 65.0% |
| CTCCGTCGTTGTCGATGCCG+CGG | - | chr5_3:5982360-5982379 | None:intergenic | 65.0% | |
| !! | TGCTGCTAAGGGCGCTGCAG+CGG | + | chr5_3:5982615-5982634 | Msa0794160:CDS | 65.0% |
| CGACAACGACGGAGCCACCG+CGG | + | chr5_3:5982366-5982385 | Msa0794160:CDS | 70.0% | |
| !! | GCTGCTAAGGGCGCTGCAGC+GGG | + | chr5_3:5982616-5982635 | Msa0794160:CDS | 70.0% |
| CGACAACGACGGAGCCACCG+CGG | + | chr5_3:5982366-5982385 | Msa0794160:CDS | 70.0% | |
| !! | GCTGCTAAGGGCGCTGCAGC+GGG | + | chr5_3:5982616-5982635 | Msa0794160:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5982130 | 5983510 | 5982130 | ID=Msa0794160;Name=Msa0794160 |
| chr5_3 | mRNA | 5982130 | 5983510 | 5982130 | ID=Msa0794160-mRNA-1;Parent=Msa0794160;Name=Msa0794160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.5|1|1|2|0|200 |
| chr5_3 | exon | 5982130 | 5982693 | 5982130 | ID=Msa0794160-mRNA-1:exon:2403;Parent=Msa0794160-mRNA-1 |
| chr5_3 | exon | 5983472 | 5983510 | 5983472 | ID=Msa0794160-mRNA-1:exon:2404;Parent=Msa0794160-mRNA-1 |
| chr5_3 | CDS | 5982130 | 5982693 | 5982130 | ID=Msa0794160-mRNA-1:cds;Parent=Msa0794160-mRNA-1 |
| chr5_3 | CDS | 5983472 | 5983510 | 5983472 | ID=Msa0794160-mRNA-1:cds;Parent=Msa0794160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
