AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0035050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035050 MtrunA17_Chr1g0193851 96.915 551 11 1 1 545 1 551 0.0 1079
Msa0035050 MtrunA17_Chr7g0226261 29.495 495 306 15 73 541 16 493 3.40e-50 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0035050 AT4G01690.1 77.963 540 107 5 12 545 4 537 0.0 838
Msa0035050 AT4G01690.2 73.333 540 101 6 12 545 4 506 0.0 769
Msa0035050 AT5G14220.1 28.163 490 312 13 75 539 21 495 9.04e-49 176
Msa0035050 AT5G14220.4 28.163 490 312 13 75 539 69 543 1.43e-48 177
Msa0035050 AT5G14220.2 28.247 485 288 15 75 539 21 465 9.47e-47 170
Msa0035050 AT5G14220.3 26.622 447 292 12 118 539 2 437 8.85e-40 150
Msa0035050 AT5G14220.5 26.622 447 292 12 118 539 2 437 8.85e-40 150

Find 202 sgRNAs with CRISPR-Local

Find 478 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGGGTGGCTTCTGTTAC+AGG 0.181287 1_1:-63061994 Msa0035050:three_prime_UTR
TCAGGTCAAAATCTACAAAA+TGG 0.183867 1_1:+63061914 None:intergenic
TGCTCAGGATCCAATTGTTT+TGG 0.225364 1_1:-63062286 Msa0035050:CDS
CAAAATGGTGGTAGCATTAT+TGG 0.232913 1_1:-63064756 Msa0035050:CDS
CCTGAGCATTTGGATTTATA+AGG 0.239671 1_1:+63062301 None:intergenic
ATTGGAGGGGCTACCAATTC+TGG 0.258952 1_1:-63062875 Msa0035050:CDS
GATTTGAGGGGCTGTTCCTT+GGG 0.259606 1_1:-63062173 Msa0035050:CDS
TGCAAAGAAACAACTCCTTC+TGG 0.269612 1_1:+63064333 None:intergenic
TGGAGAGAGATGGGTTTCTT+TGG 0.273128 1_1:-63067186 Msa0035050:CDS
AGATTTATTGTGTTAGGTTC+TGG 0.274766 1_1:-63062011 Msa0035050:three_prime_UTR
TCTCTCCTGTATTGCTTTGA+AGG 0.274882 1_1:+63064728 None:intergenic
GGCAAGATCAGGGCTGGCTT+TGG 0.280653 1_1:-63066218 Msa0035050:CDS
GGCAAATCAGTTGGCTTTCC+CGG 0.284184 1_1:+63066266 None:intergenic
TCTGATCTAATGGCTTCTTT+TGG 0.297997 1_1:+63063198 None:intergenic
TCAAATATGCATATTCTGTT+TGG 0.302457 1_1:-63061828 Msa0035050:three_prime_UTR
ACAATTGGATCCTGAGCATT+TGG 0.304286 1_1:+63062291 None:intergenic
GATGGTGAGTTGAAGGGATT+TGG 0.305933 1_1:-63063165 Msa0035050:CDS
CGGAAAAGGGTTTGAGAGGG+TGG 0.309264 1_1:+63067511 None:intergenic
TTAAGTATGAAAGCAGCTTT+TGG 0.310156 1_1:-63064798 Msa0035050:CDS
TTTGAAGGACGATCTTGTTT+TGG 0.318825 1_1:-63066342 Msa0035050:intron
GATTTATTGTGTTAGGTTCT+GGG 0.321154 1_1:-63062010 Msa0035050:three_prime_UTR
GCCTCGGTAACAACAACATT+GGG 0.323168 1_1:+63067241 None:intergenic
TCAGAAGGTTGAAAACTATT+AGG 0.342704 1_1:+63067154 None:intergenic
CTTCCAGGTGGTGCTCGGTT+AGG 0.346004 1_1:+63062917 None:intergenic
GGGAGAGGGGAATGGAGATG+AGG 0.347119 1_1:+63067487 None:intergenic
CCATTCCACAACACAAATCT+AGG 0.348854 1_1:+63066305 None:intergenic
GGATTTGAGGGGCTGTTCCT+TGG 0.351474 1_1:-63062174 Msa0035050:CDS
AATTATTTCAAAACATTGTA+TGG 0.351781 1_1:+63061880 None:intergenic
TTTATCAGATTTATTGTGTT+AGG 0.353203 1_1:-63062017 Msa0035050:three_prime_UTR
ACAGTTTGACCCTTTGGCTT+TGG 0.353786 1_1:+63064589 None:intergenic
TACCTAATGTTTGCACTCCT+TGG 0.364807 1_1:+63063124 None:intergenic
TGAGTATTGGTGGCAAGATC+AGG 0.365761 1_1:-63066229 Msa0035050:CDS
GAGTTCGTGCGTCGAAATCT+TGG 0.366392 1_1:-63066008 Msa0035050:CDS
TTCTTTGACTTAATGAGTAT+TGG 0.369041 1_1:-63066242 Msa0035050:CDS
GTGAAGGTGGAGAAAGAAGG+AGG 0.371679 1_1:+63067560 None:intergenic
GTTTGCTTGCCACTTGCAAT+TGG 0.372185 1_1:+63067683 None:intergenic
AATGGAGATGAGGGCGGAAA+AGG 0.374801 1_1:+63067497 None:intergenic
TGTATGGATTTACATATATC+AGG 0.376089 1_1:+63061896 None:intergenic
GTAACAAGGTGAAGTTATCT+TGG 0.380123 1_1:-63064413 Msa0035050:CDS
GCTATTCCACAGTTCTTAGT+TGG 0.382466 1_1:-63062243 Msa0035050:CDS
CAGGTCAAAATCTACAAAAT+GGG 0.383515 1_1:+63061915 None:intergenic
GAAATGGAAACTGCCGCAAC+TGG 0.385344 1_1:+63063225 None:intergenic
GCAAAGAAACAACTCCTTCT+GGG 0.387031 1_1:+63064334 None:intergenic
TATCAAGCATTCTGATCTAA+TGG 0.392972 1_1:+63063188 None:intergenic
GGAGAGAGATGGGTTTCTTT+GGG 0.394520 1_1:-63067185 Msa0035050:CDS
TGGCTCTGACCTGAACAAAA+AGG 0.394707 1_1:+63065957 None:intergenic
CTTTGATAAAATCCCAGAAT+TGG 0.395418 1_1:+63062862 None:intergenic
CTATGTGTCTGGTGTTGCCT+TGG 0.396049 1_1:-63062145 Msa0035050:CDS
AGTTCGTGCGTCGAAATCTT+GGG 0.397568 1_1:-63066007 Msa0035050:CDS
TTCAAGAGTAGAACCCTTCC+AGG 0.398239 1_1:+63062902 None:intergenic
TTCCAGGTGGTGCTCGGTTA+GGG 0.398524 1_1:+63062918 None:intergenic
GATCCAACAGTTTGACCCTT+TGG 0.399991 1_1:+63064583 None:intergenic
ACTTTGTCATTACAATGAAA+TGG 0.400400 1_1:+63062039 None:intergenic
GGAGAGGGGAATGGAGATGA+GGG 0.400978 1_1:+63067488 None:intergenic
GATGGGTTTCTTTGGGAAGA+AGG 0.407260 1_1:-63067178 Msa0035050:CDS
TACTGTTACTGAAACTTAAC+CGG 0.413758 1_1:+63067640 None:intergenic
ACCACCTCAAAATCAAATTC+CGG 0.416364 1_1:-63067358 Msa0035050:CDS
GGTTTGAGAGGGTGGGAAGA+AGG 0.417299 1_1:+63067519 None:intergenic
ATGGAGATGAGGGCGGAAAA+GGG 0.425171 1_1:+63067498 None:intergenic
TTGGAGGGGCTACCAATTCT+GGG 0.425638 1_1:-63062874 Msa0035050:CDS
TGGGAAATTGAGGCCGGTGC+CGG 0.426371 1_1:-63066285 Msa0035050:CDS
GTGGTGCTCGGTTAGGGAAA+AGG 0.428455 1_1:+63062924 None:intergenic
GTCAAACTGTTGGATCATTC+CGG 0.429218 1_1:-63064576 Msa0035050:CDS
GCAACATGGTAAGTCCCTTC+CGG 0.429534 1_1:+63064557 None:intergenic
TGGAGGAGGGGAGAGGGGAA+TGG 0.433925 1_1:+63067479 None:intergenic
TTGAATTGGAGGAGGGGAGA+GGG 0.437085 1_1:+63067473 None:intergenic
AGTATTAGTAAACTGGATAG+TGG 0.439960 1_1:-63064381 Msa0035050:CDS
CTAGATTTGTGTTGTGGAAT+GGG 0.440359 1_1:-63066304 Msa0035050:CDS
AGGGCTGGCTTTGGAGCACT+TGG 0.442410 1_1:-63066209 Msa0035050:CDS
TACCTAGCAGAAATTGCGTT+TGG 0.443372 1_1:+63064535 None:intergenic
TTTGAATTGGAGGAGGGGAG+AGG 0.450097 1_1:+63067472 None:intergenic
GAAGGTGGAGAAAGAAGGAG+GGG 0.453418 1_1:+63067562 None:intergenic
TGAATTGGAGGAGGGGAGAG+GGG 0.459578 1_1:+63067474 None:intergenic
GAGGGGAATGGAGATGAGGG+CGG 0.459680 1_1:+63067491 None:intergenic
TCAGTTGGCTTTCCCGGCAC+CGG 0.460917 1_1:+63066272 None:intergenic
TACTCTTGAATTACATTGGA+GGG 0.461041 1_1:-63062889 Msa0035050:CDS
GGAGACGGAGAATGGGGTTA+TGG 0.461330 1_1:+63067422 None:intergenic
TATGTGTCTGGTGTTGCCTT+GGG 0.462152 1_1:-63062144 Msa0035050:CDS
GTGTGGAGGCTCGAACAAAA+TGG 0.463440 1_1:-63064771 Msa0035050:CDS
GGAGCAACGGAGACGGAGAA+TGG 0.472053 1_1:+63067414 None:intergenic
AAGGAACAGCCCCTCAAATC+CGG 0.472268 1_1:+63062176 None:intergenic
GTTCTACTCTTGAATTACAT+TGG 0.473931 1_1:-63062893 Msa0035050:CDS
TTCTCCACCTTCACCCGCCA+TGG 0.474334 1_1:-63067551 Msa0035050:exon
AGAAAACACACTGGAGGAGG+AGG 0.474459 1_1:+63066179 None:intergenic
AACACAAATCTAGGTGCATC+AGG 0.475052 1_1:+63066314 None:intergenic
GAGCAACGGAGACGGAGAAT+GGG 0.476836 1_1:+63067415 None:intergenic
TGGTGCTCGGTTAGGGAAAA+GGG 0.478452 1_1:+63062925 None:intergenic
TTTGACTTAATGAGTATTGG+TGG 0.479201 1_1:-63066239 Msa0035050:CDS
GAAAGTGCATCTGCAGCAGC+AGG 0.479760 1_1:+63063264 None:intergenic
GGGAAATTGAGGCCGGTGCC+GGG 0.482439 1_1:-63066284 Msa0035050:CDS
AGATCAGAATGCTTGATAGA+TGG 0.483446 1_1:-63063183 Msa0035050:CDS
CGGGTGAAGGTGGAGAAAGA+AGG 0.486279 1_1:+63067557 None:intergenic
CGCCTCGGTAACAACAACAT+TGG 0.487396 1_1:+63067240 None:intergenic
CCTTATAAATCCAAATGCTC+AGG 0.489745 1_1:-63062301 Msa0035050:CDS
GCGTCGAAATCTTGGGGCCG+AGG 0.491211 1_1:-63066000 Msa0035050:CDS
AGCCAAGGAGTGCAAACATT+AGG 0.492529 1_1:-63063126 Msa0035050:intron
GACTGTGTGGTTGTTGGTGG+TGG 0.492721 1_1:-63067319 Msa0035050:CDS
TTCCCTAACCGAGCACCACC+TGG 0.500403 1_1:-63062920 Msa0035050:CDS
CTTGATAGATGGTGAGTTGA+AGG 0.501381 1_1:-63063172 Msa0035050:CDS
CAGACATTGGACAACATATC+CGG 0.501565 1_1:-63067659 Msa0035050:five_prime_UTR
ATTTGAGGGGCTGTTCCTTG+GGG 0.502668 1_1:-63062172 Msa0035050:CDS
AAGCCAAAGGGTCAAACTGT+TGG 0.506404 1_1:-63064586 Msa0035050:CDS
GCCTTGGGAAGGTGTGTGGA+GGG 0.510451 1_1:-63062129 Msa0035050:CDS
GTGACAGGGTCATGAGGAAT+CGG 0.511762 1_1:-63066036 Msa0035050:intron
TGCCTTGGGAAGGTGTGTGG+AGG 0.511821 1_1:-63062130 Msa0035050:CDS
TCCGTCGACTGTGTGGTTGT+TGG 0.512497 1_1:-63067325 Msa0035050:CDS
ATTATTACCGTGGAGAGAGA+TGG 0.512962 1_1:-63067196 Msa0035050:CDS
TGGAGCCTTCAAAGCAATAC+AGG 0.517480 1_1:-63064733 Msa0035050:CDS
CCTAGATTTGTGTTGTGGAA+TGG 0.519996 1_1:-63066305 Msa0035050:CDS
TGAAGGTGGAGAAAGAAGGA+GGG 0.523848 1_1:+63067561 None:intergenic
ATACTCATTAAGTCAAAGAA+AGG 0.523934 1_1:+63066245 None:intergenic
ACAGACAGTGGTTGCAGCAA+TGG 0.525178 1_1:+63064267 None:intergenic
GTTGTTGGTGGTGGCATCAG+TGG 0.527241 1_1:-63067310 Msa0035050:CDS
CAGTGGACTATGTATTGCTC+AGG 0.529861 1_1:-63067293 Msa0035050:CDS
CTACTCTTGAATTACATTGG+AGG 0.531064 1_1:-63062890 Msa0035050:CDS
TCCCTCCACACACCTTCCCA+AGG 0.537397 1_1:+63062128 None:intergenic
TTATTACCGTGGAGAGAGAT+GGG 0.537500 1_1:-63067195 Msa0035050:CDS
TGTTGCCTTGGGAAGGTGTG+TGG 0.538260 1_1:-63062133 Msa0035050:CDS
CCGCAATGGAGCAACGGAGA+CGG 0.540345 1_1:+63067407 None:intergenic
CAAAGAAACAACTCCTTCTG+GGG 0.540704 1_1:+63064335 None:intergenic
AGAAATTGCGTTTGGCAACA+TGG 0.544410 1_1:+63064543 None:intergenic
TGTTGTGGAATGGGAAATTG+AGG 0.544788 1_1:-63066295 Msa0035050:CDS
TCATATACAGGTGTCTATGC+CGG 0.548115 1_1:-63064834 Msa0035050:intron
ATTGGTGGCAAGATCAGGGC+TGG 0.549710 1_1:-63066224 Msa0035050:CDS
ACTCTTGAATTACATTGGAG+GGG 0.550694 1_1:-63062888 Msa0035050:CDS
AAAAGAAAACACACTGGAGG+AGG 0.550713 1_1:+63066176 None:intergenic
GAACCCTTCCAGGTGGTGCT+CGG 0.551325 1_1:+63062912 None:intergenic
AGTATAACCATGGCGGGTGA+AGG 0.553366 1_1:+63067544 None:intergenic
GTCGACTGTGTGGTTGTTGG+TGG 0.553915 1_1:-63067322 Msa0035050:CDS
TCAAAGAAAGGCAAATCAGT+TGG 0.554397 1_1:+63066257 None:intergenic
GATTTGGTCAATTGCATCCA+CGG 0.558189 1_1:-63063149 Msa0035050:CDS
TGTCTGGTGTTGCCTTGGGA+AGG 0.559605 1_1:-63062140 Msa0035050:CDS
GAGTATTGGTGGCAAGATCA+GGG 0.567150 1_1:-63066228 Msa0035050:CDS
TTTGAGGGGCTGTTCCTTGG+GGG 0.567319 1_1:-63062171 Msa0035050:CDS
TGCGGTGGATTCCTCCGCAA+TGG 0.568908 1_1:+63067393 None:intergenic
TAGGCGTCTGCCAAAGCCAA+AGG 0.571021 1_1:-63064599 Msa0035050:CDS
AGGTCAAAATCTACAAAATG+GGG 0.571412 1_1:+63061916 None:intergenic
GAGGCGAAAGATCGAGTTGG+TGG 0.572541 1_1:-63067223 Msa0035050:CDS
TGGCAAGCAAACACAGACAT+TGG 0.573803 1_1:-63067672 Msa0035050:five_prime_UTR
ATAACCATGGCGGGTGAAGG+TGG 0.577809 1_1:+63067547 None:intergenic
TTGCTAAATGCATGAGCAAG+TGG 0.580958 1_1:+63061960 None:intergenic
ATGCACCTAGATTTGTGTTG+TGG 0.582787 1_1:-63066310 Msa0035050:CDS
AAGGTGAGTATAACCATGGC+GGG 0.584065 1_1:+63067538 None:intergenic
TAACCGAGCACCACCTGGAA+GGG 0.584581 1_1:-63062915 Msa0035050:CDS
CAATTGCATCCACGGAGCCA+AGG 0.584598 1_1:-63063141 Msa0035050:CDS
AACCACACAGTCGACGGATG+AGG 0.587789 1_1:+63067330 None:intergenic
AGGCGTCTGCCAAAGCCAAA+GGG 0.588421 1_1:-63064598 Msa0035050:CDS
AATGGTGGTAGCATTATTGG+TGG 0.588539 1_1:-63064753 Msa0035050:CDS
AGGGCGGAAAAGGGTTTGAG+AGG 0.589272 1_1:+63067507 None:intergenic
CTAACCGAGCACCACCTGGA+AGG 0.589476 1_1:-63062916 Msa0035050:CDS
AACTGTTGGATCATTCCGGA+AGG 0.589794 1_1:-63064572 Msa0035050:CDS
GGAAAAGGGTTTGAGAGGGT+GGG 0.590002 1_1:+63067512 None:intergenic
TGTTGGCAGGTTAGGTAACA+AGG 0.592433 1_1:-63064427 Msa0035050:intron
GTCGACGGATGAGGACTCTC+CGG 0.593499 1_1:+63067339 None:intergenic
GCAGCAATGGACTAGCAACA+TGG 0.594611 1_1:+63064280 None:intergenic
ACTAGCAACATGGGAAGGAA+TGG 0.596346 1_1:+63064290 None:intergenic
CCGTCTCCGTTGCTCCATTG+CGG 0.597409 1_1:-63067407 Msa0035050:CDS
CGCAGAGAGTGTACAAGTAG+CGG 0.598522 1_1:-63062068 Msa0035050:exon
ACCAACAACCACACAGTCGA+CGG 0.599076 1_1:+63067324 None:intergenic
TTTGTTTAATTGCAGACGGA+GGG 0.606182 1_1:-63062363 Msa0035050:intron
GTTTGCACTCCTTGGCTCCG+TGG 0.607612 1_1:+63063132 None:intergenic
TACTTCAGCTGCTATCTCGT+AGG 0.608699 1_1:+63062104 None:intergenic
ACCAACTCGATCTTTCGCCT+CGG 0.609410 1_1:+63067225 None:intergenic
GAAAACACACTGGAGGAGGA+GGG 0.609629 1_1:+63066180 None:intergenic
ATGTAAGAGCCAATTGCAAG+TGG 0.609856 1_1:-63067692 Msa0035050:five_prime_UTR
CCCCAATGTTGTTGTTACCG+AGG 0.610569 1_1:-63067242 Msa0035050:CDS
CTTTCTACAAAACATGCTGA+TGG 0.614095 1_1:-63067268 Msa0035050:CDS
ATGGTGAGCATAGGATCAGA+AGG 0.615324 1_1:+63067139 None:intergenic
CATACCACCATGGTGAGCAT+AGG 0.615890 1_1:+63067130 None:intergenic
ACTTGCTCATGCATTTAGCA+AGG 0.616451 1_1:-63061958 Msa0035050:three_prime_UTR
ATGGAAACTGCCGCAACTGG+AGG 0.618307 1_1:+63063228 None:intergenic
TCTCCGTTGCTCCATTGCGG+AGG 0.619176 1_1:-63067404 Msa0035050:CDS
TGATCCTATGCTCACCATGG+TGG 0.621350 1_1:-63067134 Msa0035050:intron
ATTCCTCCGCAATGGAGCAA+CGG 0.621982 1_1:+63067401 None:intergenic
TGCCAAACGCAATTTCTGCT+AGG 0.622423 1_1:-63064537 Msa0035050:intron
GTCCTCATCCGTCGACTGTG+TGG 0.625269 1_1:-63067332 Msa0035050:CDS
TTATTGTGTTAGGTTCTGGG+TGG 0.627991 1_1:-63062007 Msa0035050:three_prime_UTR
AAGAACTGTGGAATAGCTTG+AGG 0.628529 1_1:+63062249 None:intergenic
TTGATAGATGGTGAGTTGAA+GGG 0.630684 1_1:-63063171 Msa0035050:CDS
ACGAAGGTGACAGGGTCATG+AGG 0.634684 1_1:-63066042 Msa0035050:intron
GTGGAATGGGAAATTGAGGC+CGG 0.635091 1_1:-63066291 Msa0035050:CDS
GGGCGGAAAAGGGTTTGAGA+GGG 0.636694 1_1:+63067508 None:intergenic
AAGAAACCCATCTCTCTCCA+CGG 0.637483 1_1:+63067189 None:intergenic
AGGCGAAAGATCGAGTTGGT+GGG 0.637489 1_1:-63067222 Msa0035050:CDS
CAGCAATGGACTAGCAACAT+GGG 0.637669 1_1:+63064281 None:intergenic
TGGTGGGAATATTATTACCG+TGG 0.637750 1_1:-63067206 Msa0035050:CDS
AATGGACTAGCAACATGGGA+AGG 0.638945 1_1:+63064285 None:intergenic
GTTCGTGCGTCGAAATCTTG+GGG 0.639972 1_1:-63066006 Msa0035050:CDS
GTCAAAATCTACAAAATGGG+GGG 0.647394 1_1:+63061918 None:intergenic
GGTCAAAATCTACAAAATGG+GGG 0.651163 1_1:+63061917 None:intergenic
AGATGTCCAACTAAGAACTG+TGG 0.655954 1_1:+63062237 None:intergenic
TTCTGATCCTATGCTCACCA+TGG 0.662399 1_1:-63067137 Msa0035050:CDS
AGCAACGGAGACGGAGAATG+GGG 0.663402 1_1:+63067416 None:intergenic
ACCGAGGCGAAAGATCGAGT+TGG 0.669092 1_1:-63067226 Msa0035050:CDS
TTGACGTATGAAACCCCAGA+AGG 0.670583 1_1:-63064348 Msa0035050:CDS
ACTGTTGGATCATTCCGGAA+GGG 0.675135 1_1:-63064571 Msa0035050:CDS
TGGAGGCTCGAACAAAATGG+TGG 0.692440 1_1:-63064768 Msa0035050:CDS
GAAGAAGGTGAGTATAACCA+TGG 0.694574 1_1:+63067534 None:intergenic
TTGATTACAACATACCACCA+TGG 0.703359 1_1:+63067120 None:intergenic
GAAGGTGAGTATAACCATGG+CGG 0.710078 1_1:+63067537 None:intergenic
CCTCGGTAACAACAACATTG+GGG 0.719137 1_1:+63067242 None:intergenic
AAGAGTAGAACCCTTCCAGG+TGG 0.742286 1_1:+63062905 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTTAAATTAAGT+TGG + chr1_1:63064173-63064192 None:intergenic 10.0%
!!! TTGATTAATATTTAAAATAG+AGG - chr1_1:63064380-63064399 Msa0035050:CDS 10.0%
!!! TGATTAATATTTAAAATAGA+GGG - chr1_1:63064381-63064400 Msa0035050:CDS 10.0%
!!! AATGAATTTTGATTTTGAAT+TGG + chr1_1:63062041-63062060 None:intergenic 15.0%
!! TTGAAATTGAAATTGAAATT+TGG - chr1_1:63062449-63062468 Msa0035050:intron 15.0%
!!! GTCATTTTTTTTAGTAAATT+TGG - chr1_1:63062536-63062555 Msa0035050:intron 15.0%
!! AGAAAATTAAACAAAAGAAA+GGG + chr1_1:63063350-63063369 None:intergenic 15.0%
!! AAGAAAATTAAACAAAAGAA+AGG + chr1_1:63063351-63063370 None:intergenic 15.0%
!! ACTATGTTAAATGAAATATA+TGG - chr1_1:63063371-63063390 Msa0035050:intron 15.0%
!!! TTTTATATAATATAGGAGTT+TGG - chr1_1:63063653-63063672 Msa0035050:intron 15.0%
!!! AAATTAAGTTGGATATTTTT+TGG + chr1_1:63064162-63064181 None:intergenic 15.0%
!! ATGAAGTAATATTAAAGAAA+AGG + chr1_1:63064585-63064604 None:intergenic 15.0%
!!! AGTTTTATTAGTTGAATATT+TGG - chr1_1:63065298-63065317 Msa0035050:intron 15.0%
!! AATTATTTCAAAACATTGTA+TGG + chr1_1:63067620-63067639 None:intergenic 15.0%
!! TAAACGTATCAAAATAGAAA+AGG - chr1_1:63062504-63062523 Msa0035050:intron 20.0%
!!! ATAATTGATTAATTAGCTTC+TGG - chr1_1:63062596-63062615 Msa0035050:intron 20.0%
!!! TCATGTCTTTTCATATTTAT+CGG + chr1_1:63062709-63062728 None:intergenic 20.0%
!!! TAGAGATGTTTTTGTAATTT+TGG - chr1_1:63063049-63063068 Msa0035050:intron 20.0%
!!! TTTTGTAATTTTGGAACATT+TGG - chr1_1:63063058-63063077 Msa0035050:intron 20.0%
!! TTAAATGAAATATATGGAAC+TGG - chr1_1:63063377-63063396 Msa0035050:intron 20.0%
!! ATATGATATAATATTGACGA+AGG - chr1_1:63063439-63063458 Msa0035050:intron 20.0%
!!! CGGAGATTTTTATATAATAT+AGG - chr1_1:63063646-63063665 Msa0035050:intron 20.0%
!! AAGAAACTTCTTATTCTATT+AGG + chr1_1:63063740-63063759 None:intergenic 20.0%
!!! ATGGATTTGAAATATTCTTT+GGG + chr1_1:63063769-63063788 None:intergenic 20.0%
!!! AAATTTCAGTTTTTAAGAGA+CGG + chr1_1:63063800-63063819 None:intergenic 20.0%
!!! TGAGTTTTAAACAAATGAAA+AGG + chr1_1:63064088-63064107 None:intergenic 20.0%
!! TCATTTCATATCAAAATATC+CGG + chr1_1:63064314-63064333 None:intergenic 20.0%
!! TCATTTATAAGAGGAAAAAT+TGG + chr1_1:63064519-63064538 None:intergenic 20.0%
!! TAATGCGAATATTAAAGAAA+AGG + chr1_1:63064611-63064630 None:intergenic 20.0%
!! TTTCTTTAATATTCGCATTA+AGG - chr1_1:63064611-63064630 Msa0035050:intron 20.0%
!!! TCAGAGTAAATGTATTTTTA+CGG + chr1_1:63064822-63064841 None:intergenic 20.0%
!!! GATTTTTCTATAAAAATCAG+AGG + chr1_1:63065519-63065538 None:intergenic 20.0%
!! TGTGATTGATATAATAATAC+TGG + chr1_1:63065766-63065785 None:intergenic 20.0%
!! TATTGCCAATTAAAAAAACA+AGG + chr1_1:63065792-63065811 None:intergenic 20.0%
!!! CATAACTCTAAAATATTACA+AGG + chr1_1:63065884-63065903 None:intergenic 20.0%
!!! ACAAATAAGTTATTTCTGAA+TGG - chr1_1:63066134-63066153 Msa0035050:intron 20.0%
!! TTGAATTTATTATGCAAAAG+TGG - chr1_1:63066401-63066420 Msa0035050:intron 20.0%
!! TACAGTTCATAATTTATACT+TGG + chr1_1:63066475-63066494 None:intergenic 20.0%
!! AAGTATGTAAAATATGTAAC+AGG + chr1_1:63067036-63067055 None:intergenic 20.0%
!! AAAGTTTCTCTTAAAAATAC+CGG - chr1_1:63067302-63067321 Msa0035050:CDS 20.0%
!! TTTATCAGATTTATTGTGTT+AGG - chr1_1:63067480-63067499 Msa0035050:CDS 20.0%
!!! GAATTTTGATTTTGAATTGG+AGG + chr1_1:63062038-63062057 None:intergenic 25.0%
!! TTCATATTTATCGGTTAGTT+TGG + chr1_1:63062700-63062719 None:intergenic 25.0%
! CTAGAATCTTGTGAAAAAAT+TGG - chr1_1:63062819-63062838 Msa0035050:intron 25.0%
!!! TAGTTGTTTTGTTTGGTTTT+TGG - chr1_1:63062932-63062951 Msa0035050:CDS 25.0%
!!! TAGTTGTTTTGTTTGGTTTT+TGG - chr1_1:63062932-63062951 Msa0035050:CDS 25.0%
! ATACTCATTAAGTCAAAGAA+AGG + chr1_1:63063255-63063274 None:intergenic 25.0%
!! TTCTTTGACTTAATGAGTAT+TGG - chr1_1:63063255-63063274 Msa0035050:CDS 25.0%
!! TGGATTTGAAATATTCTTTG+GGG + chr1_1:63063768-63063787 None:intergenic 25.0%
!! GATGGATTTGAAATATTCTT+TGG + chr1_1:63063770-63063789 None:intergenic 25.0%
!!! AATTTCAGTTTTTAAGAGAC+GGG + chr1_1:63063799-63063818 None:intergenic 25.0%
! ATTTGCATAGATTAAGACTT+TGG - chr1_1:63063823-63063842 Msa0035050:intron 25.0%
! TTTGCATAGATTAAGACTTT+GGG - chr1_1:63063824-63063843 Msa0035050:intron 25.0%
! ATGGTGCATTTATCAAATTA+AGG + chr1_1:63064484-63064503 None:intergenic 25.0%
! AAATTGGAAGAAAGGAAAAA+TGG + chr1_1:63064503-63064522 None:intergenic 25.0%
!! GCTTTCATACTTAATTTTGA+AGG + chr1_1:63064693-63064712 None:intergenic 25.0%
!!! AAATGTATTTTTACGGATCA+CGG + chr1_1:63064815-63064834 None:intergenic 25.0%
!! ATACATTTACTCTGAGTTTT+TGG - chr1_1:63064827-63064846 Msa0035050:CDS 25.0%
!!! GCTTTTAAGTATTAGTAAAC+TGG - chr1_1:63065109-63065128 Msa0035050:intron 25.0%
!!! CTGTAAGTTTTTCTAAAAAG+TGG - chr1_1:63065249-63065268 Msa0035050:intron 25.0%
! AAATCAGAGGATGATAAATA+GGG + chr1_1:63065506-63065525 None:intergenic 25.0%
! AAAATCAGAGGATGATAAAT+AGG + chr1_1:63065507-63065526 None:intergenic 25.0%
! TTTCTTATCTGTTCAACATA+TGG - chr1_1:63065540-63065559 Msa0035050:intron 25.0%
! TTTCCAAAAACTTACTACTA+CGG - chr1_1:63065598-63065617 Msa0035050:intron 25.0%
!!! TACTACGGATAATTTTGTTT+GGG - chr1_1:63065613-63065632 Msa0035050:intron 25.0%
! CAGAATCAAAGACAAAAATT+TGG - chr1_1:63065683-63065702 Msa0035050:intron 25.0%
! CTTATGGCTGTTAAAATATT+TGG - chr1_1:63065719-63065738 Msa0035050:intron 25.0%
!!! CAGTTCCTTGTTTTTTTAAT+TGG - chr1_1:63065784-63065803 Msa0035050:intron 25.0%
! TTAACAATAATTTCACAGTC+AGG + chr1_1:63065844-63065863 None:intergenic 25.0%
! AAGTAAACAACCGATATTTA+AGG + chr1_1:63066027-63066046 None:intergenic 25.0%
! GTAATTATTAAAAAATCGCG+TGG + chr1_1:63066449-63066468 None:intergenic 25.0%
! GTTCATAATTTATACTTGGA+TGG + chr1_1:63066471-63066490 None:intergenic 25.0%
!! TAAAATGTGTTGTGTAGTTT+TGG - chr1_1:63066493-63066512 Msa0035050:intron 25.0%
!! TGGTAATGATAACATATTTG+TGG - chr1_1:63066522-63066541 Msa0035050:intron 25.0%
! GGTAATGATAACATATTTGT+GGG - chr1_1:63066523-63066542 Msa0035050:intron 25.0%
! AAGTTTAAACACTTGAAACA+AGG + chr1_1:63066841-63066860 None:intergenic 25.0%
! TATATGATCAAATAACAGAG+AGG + chr1_1:63067013-63067032 None:intergenic 25.0%
! ACTTTGTCATTACAATGAAA+TGG + chr1_1:63067461-63067480 None:intergenic 25.0%
! TGTATGGATTTACATATATC+AGG + chr1_1:63067604-63067623 None:intergenic 25.0%
! TCAAATATGCATATTCTGTT+TGG - chr1_1:63067669-63067688 Msa0035050:five_prime_UTR 25.0%
TACTGTTACTGAAACTTAAC+CGG + chr1_1:63061860-63061879 None:intergenic 30.0%
!! TTTGATTTTGAATTGGAGGA+GGG + chr1_1:63062034-63062053 None:intergenic 30.0%
!!! TTTTGATTTTGAATTGGAGG+AGG + chr1_1:63062035-63062054 None:intergenic 30.0%
TCAGAAGGTTGAAAACTATT+AGG + chr1_1:63062346-63062365 None:intergenic 30.0%
!! TTACGAATGAAGCTTTAAAG+AGG + chr1_1:63062411-63062430 None:intergenic 30.0%
TTAAAGCTTCATTCGTAATG+TGG - chr1_1:63062413-63062432 Msa0035050:intron 30.0%
! ATTGATTAATTAGCTTCTGG+CGG - chr1_1:63062599-63062618 Msa0035050:intron 30.0%
GTGTTTGAATTTGTAGTGTT+TGG - chr1_1:63062657-63062676 Msa0035050:intron 30.0%
GTTTGGTAAAATTAACGCTA+CGG - chr1_1:63062674-63062693 Msa0035050:intron 30.0%
!! AAGCTTTAAACTACTTGAAG+TGG - chr1_1:63062763-63062782 Msa0035050:intron 30.0%
GAAAAAATTGGTTACCAAAC+AGG - chr1_1:63062831-63062850 Msa0035050:intron 30.0%
TTATAGCTTATAAGCTCGTA+TGG + chr1_1:63062867-63062886 None:intergenic 30.0%
!! AGACACTTAGTTGTTTTGTT+TGG - chr1_1:63062925-63062944 Msa0035050:CDS 30.0%
!! AGATGCTTAGTTGTTTTGTT+TGG - chr1_1:63062958-63062977 Msa0035050:intron 30.0%
GTTGTTACTATTAATCAGCT+TGG - chr1_1:63062992-63063011 Msa0035050:intron 30.0%
!!! ACATGTTGGTAATATGGTTT+TGG - chr1_1:63063104-63063123 Msa0035050:intron 30.0%
!!! TTTGGTTGTTTTATTTGTGC+AGG - chr1_1:63063122-63063141 Msa0035050:intron 30.0%
!! TTTGACTTAATGAGTATTGG+TGG - chr1_1:63063258-63063277 Msa0035050:CDS 30.0%
AAACAGGACAATGAAAAAGT+TGG + chr1_1:63063566-63063585 None:intergenic 30.0%
AGAACATAAAAGTAGGTAGT+TGG + chr1_1:63063624-63063643 None:intergenic 30.0%
!! AACTACCTACTTTTATGTTC+TGG - chr1_1:63063623-63063642 Msa0035050:intron 30.0%
ACCCTATAATATTCAGTTCT+TGG - chr1_1:63063676-63063695 Msa0035050:intron 30.0%
GCCAAGAACTGAATATTATA+GGG + chr1_1:63063680-63063699 None:intergenic 30.0%
! GCAATATTTCTATGTTCATG+CGG - chr1_1:63063873-63063892 Msa0035050:intron 30.0%
!! ATAAGTGGCTACACTTTTTA+GGG - chr1_1:63063906-63063925 Msa0035050:intron 30.0%
! TCTGCATATTGTGTTAGTTT+AGG - chr1_1:63063943-63063962 Msa0035050:intron 30.0%
! CTGCATATTGTGTTAGTTTA+GGG - chr1_1:63063944-63063963 Msa0035050:intron 30.0%
! TTAGGGCGTAATTACAATTT+TGG - chr1_1:63063961-63063980 Msa0035050:intron 30.0%
AGGATTTCAAGAGAAGATTT+GGG + chr1_1:63064197-63064216 None:intergenic 30.0%
TAGGATTTCAAGAGAAGATT+TGG + chr1_1:63064198-63064217 None:intergenic 30.0%
! ATTTTGTAGAATGCGAGATT+AGG + chr1_1:63064217-63064236 None:intergenic 30.0%
GATATGAAATGAGACTTTAG+AGG - chr1_1:63064322-63064341 Msa0035050:CDS 30.0%
TCACACATAACTCAAACTAT+AGG - chr1_1:63064440-63064459 Msa0035050:intron 30.0%
CACACATAACTCAAACTATA+GGG - chr1_1:63064441-63064460 Msa0035050:intron 30.0%
AAGAGGAAAAATTGGAAGAA+AGG + chr1_1:63064511-63064530 None:intergenic 30.0%
TGCTTGTCATCATTTATAAG+AGG + chr1_1:63064528-63064547 None:intergenic 30.0%
!! AGCTGATTTTTGTCATATAC+AGG - chr1_1:63064651-63064670 Msa0035050:intron 30.0%
! TTAAGTATGAAAGCAGCTTT+TGG - chr1_1:63064699-63064718 Msa0035050:CDS 30.0%
! TAAGTATGAAAGCAGCTTTT+GGG - chr1_1:63064700-63064719 Msa0035050:CDS 30.0%
!! AATGTATTTTTACGGATCAC+GGG + chr1_1:63064814-63064833 None:intergenic 30.0%
! GATATTTTGCCATAGTTGAT+GGG - chr1_1:63064849-63064868 Msa0035050:intron 30.0%
ACTGATTGCAACAATTATGT+AGG - chr1_1:63064879-63064898 Msa0035050:intron 30.0%
AGTATTAGTAAACTGGATAG+TGG - chr1_1:63065116-63065135 Msa0035050:intron 30.0%
TTAGAAAAACTTACAGACAG+TGG + chr1_1:63065245-63065264 None:intergenic 30.0%
ATTAGTTGAATATTTGGACC+TGG - chr1_1:63065304-63065323 Msa0035050:intron 30.0%
TTAGTTGAATATTTGGACCT+GGG - chr1_1:63065305-63065324 Msa0035050:intron 30.0%
! TTTTGTAAGTATACACGTCT+TGG - chr1_1:63065352-63065371 Msa0035050:intron 30.0%
AAACACTCAAACAATCAAAG+AGG + chr1_1:63065423-63065442 None:intergenic 30.0%
AATAGGGAAATGTGAAATCA+TGG + chr1_1:63065490-63065509 None:intergenic 30.0%
! TATCCGTAGTAGTAAGTTTT+TGG + chr1_1:63065604-63065623 None:intergenic 30.0%
! CTACTACGGATAATTTTGTT+TGG - chr1_1:63065612-63065631 Msa0035050:intron 30.0%
! TTGATTCTGAAAACTGTCTA+TGG + chr1_1:63065672-63065691 None:intergenic 30.0%
GAACTAGGTTCCTTAAATAT+CGG - chr1_1:63066014-63066033 Msa0035050:CDS 30.0%
AAATGCCTCAACTTATATGA+TGG + chr1_1:63066182-63066201 None:intergenic 30.0%
AGAGATATTGAAATGTAGTC+AGG + chr1_1:63066208-63066227 None:intergenic 30.0%
TATCAAGCATTCTGATCTAA+TGG + chr1_1:63066312-63066331 None:intergenic 30.0%
GTTCTACTCTTGAATTACAT+TGG - chr1_1:63066604-63066623 Msa0035050:intron 30.0%
TACTCTTGAATTACATTGGA+GGG - chr1_1:63066608-63066627 Msa0035050:intron 30.0%
CTTTGATAAAATCCCAGAAT+TGG + chr1_1:63066638-63066657 None:intergenic 30.0%
!!! CAATTCTGGGATTTTATCAA+AGG - chr1_1:63066636-63066655 Msa0035050:intron 30.0%
!! GAAGAGAATCTTTGAAATCT+TGG - chr1_1:63066897-63066916 Msa0035050:intron 30.0%
!! ATCTTTGAAATCTTGGTCAA+AGG - chr1_1:63066904-63066923 Msa0035050:intron 30.0%
GCAATTAAACAAAAGGCTTT+AGG + chr1_1:63067127-63067146 None:intergenic 30.0%
TCTTAAAAATACCGGATTTG+AGG - chr1_1:63067310-63067329 Msa0035050:CDS 30.0%
CTTAAAAATACCGGATTTGA+GGG - chr1_1:63067311-63067330 Msa0035050:CDS 30.0%
TTAAAAATACCGGATTTGAG+GGG - chr1_1:63067312-63067331 Msa0035050:CDS 30.0%
AGATTTATTGTGTTAGGTTC+TGG - chr1_1:63067486-63067505 Msa0035050:CDS 30.0%
GATTTATTGTGTTAGGTTCT+GGG - chr1_1:63067487-63067506 Msa0035050:CDS 30.0%
AGGTCAAAATCTACAAAATG+GGG + chr1_1:63067584-63067603 None:intergenic 30.0%
CAGGTCAAAATCTACAAAAT+GGG + chr1_1:63067585-63067604 None:intergenic 30.0%
TCAGGTCAAAATCTACAAAA+TGG + chr1_1:63067586-63067605 None:intergenic 30.0%
! TTGATTTTGAATTGGAGGAG+GGG + chr1_1:63062033-63062052 None:intergenic 35.0%
!!! GATTTTGAGGTGGTTTTAGT+CGG + chr1_1:63062133-63062152 None:intergenic 35.0%
ACCACCTCAAAATCAAATTC+CGG - chr1_1:63062139-63062158 Msa0035050:CDS 35.0%
CTTTCTACAAAACATGCTGA+TGG - chr1_1:63062229-63062248 Msa0035050:CDS 35.0%
TTGATTACAACATACCACCA+TGG + chr1_1:63062380-63062399 None:intergenic 35.0%
TTTAGGCTCTGTCAAAATAG+CGG - chr1_1:63062573-63062592 Msa0035050:intron 35.0%
GTTACCAAACAGGTCTAATT+TGG - chr1_1:63062841-63062860 Msa0035050:intron 35.0%
! CATTTTGAGCTTATAGCAGA+TGG + chr1_1:63062891-63062910 None:intergenic 35.0%
!! TTTGAAGGACGATCTTGTTT+TGG - chr1_1:63063155-63063174 Msa0035050:CDS 35.0%
!!! TTGAAGGACGATCTTGTTTT+GGG - chr1_1:63063156-63063175 Msa0035050:CDS 35.0%
CTAGATTTGTGTTGTGGAAT+GGG - chr1_1:63063193-63063212 Msa0035050:CDS 35.0%
TCAAAGAAAGGCAAATCAGT+TGG + chr1_1:63063243-63063262 None:intergenic 35.0%
ATCAAAAGAAAACACACTGG+AGG + chr1_1:63063327-63063346 None:intergenic 35.0%
ATGAAATATATGGAACTGGC+AGG - chr1_1:63063381-63063400 Msa0035050:intron 35.0%
ATAATATTGACGAAGGTGAC+AGG - chr1_1:63063446-63063465 Msa0035050:intron 35.0%
TAATATTGACGAAGGTGACA+GGG - chr1_1:63063447-63063466 Msa0035050:intron 35.0%
AACAACTGAGAGTGAAAAAC+AGG + chr1_1:63063582-63063601 None:intergenic 35.0%
!! TACCTACTTTTATGTTCTGG+CGG - chr1_1:63063626-63063645 Msa0035050:intron 35.0%
CGCCAAGAACTGAATATTAT+AGG + chr1_1:63063681-63063700 None:intergenic 35.0%
CCAAAAAGCAGTTATCATGA+TGG + chr1_1:63063717-63063736 None:intergenic 35.0%
!! CCATCATGATAACTGCTTTT+TGG - chr1_1:63063714-63063733 Msa0035050:intron 35.0%
TGCGGAATTTGTAACATAAG+TGG - chr1_1:63063891-63063910 Msa0035050:intron 35.0%
!! CATAAGTGGCTACACTTTTT+AGG - chr1_1:63063905-63063924 Msa0035050:intron 35.0%
!!! GTCTCTGTAGTTTTTTTCGA+GGG + chr1_1:63064415-63064434 None:intergenic 35.0%
! GTTTGAGTTATGTGTGACTT+TGG + chr1_1:63064437-63064456 None:intergenic 35.0%
ATGACAAAAATCAGCTAAGC+AGG + chr1_1:63064647-63064666 None:intergenic 35.0%
!! ACTTAATTTTGAAGGATCGC+CGG + chr1_1:63064685-63064704 None:intergenic 35.0%
CAAAATGGTGGTAGCATTAT+TGG - chr1_1:63064741-63064760 Msa0035050:CDS 35.0%
!! ATGTATTTTTACGGATCACG+GGG + chr1_1:63064813-63064832 None:intergenic 35.0%
! GGATATTTTGCCATAGTTGA+TGG - chr1_1:63064848-63064867 Msa0035050:intron 35.0%
GTAAACTAACCCATCAACTA+TGG + chr1_1:63064861-63064880 None:intergenic 35.0%
TGGTGAAACAACTAGAACAA+TGG + chr1_1:63065005-63065024 None:intergenic 35.0%
GTAACAAGGTGAAGTTATCT+TGG - chr1_1:63065084-63065103 Msa0035050:intron 35.0%
TTCAATAAGACAAATGACCC+AGG + chr1_1:63065325-63065344 None:intergenic 35.0%
AAAACTAAAGACCTGCAGTA+AGG + chr1_1:63065380-63065399 None:intergenic 35.0%
!!! GGTTTTGTTTAGTGATTAGC+AGG - chr1_1:63065634-63065653 Msa0035050:intron 35.0%
TTTAGTGATTAGCAGGTTCT+AGG - chr1_1:63065641-63065660 Msa0035050:intron 35.0%
TTAGTGATTAGCAGGTTCTA+GGG - chr1_1:63065642-63065661 Msa0035050:intron 35.0%
! ACTGGTTTCTTCAGACTTAT+AGG + chr1_1:63065748-63065767 None:intergenic 35.0%
!!! ATTACGGGTTTTTTGCATAC+AGG + chr1_1:63065951-63065970 None:intergenic 35.0%
CAAAAAACCCGTAATGTTTC+CGG - chr1_1:63065956-63065975 Msa0035050:intron 35.0%
CTATATAGCTTCTGCTATGT+AGG + chr1_1:63065995-63066014 None:intergenic 35.0%
AGCAGAAGCTATATAGAACT+AGG - chr1_1:63065999-63066018 Msa0035050:CDS 35.0%
ATTTCTGAATGGCCAATTTC+TGG - chr1_1:63066145-63066164 Msa0035050:intron 35.0%
!! GTTTTATTATCCTCCAGTTG+CGG - chr1_1:63066259-63066278 Msa0035050:CDS 35.0%
! TCTAATGGCTTCTTTTGGAT+AGG + chr1_1:63066297-63066316 None:intergenic 35.0%
! TCTGATCTAATGGCTTCTTT+TGG + chr1_1:63066302-63066321 None:intergenic 35.0%
AGATCAGAATGCTTGATAGA+TGG - chr1_1:63066314-63066333 Msa0035050:CDS 35.0%
! TTGATAGATGGTGAGTTGAA+GGG - chr1_1:63066326-63066345 Msa0035050:CDS 35.0%
!!! ATGTGTTGTGTAGTTTTGGA+AGG - chr1_1:63066497-63066516 Msa0035050:intron 35.0%
!!! TTGTGTAGTTTTGGAAGGTA+TGG - chr1_1:63066502-63066521 Msa0035050:intron 35.0%
AACATATTTGTGGGTTTGAC+AGG - chr1_1:63066532-63066551 Msa0035050:intron 35.0%
CTACTCTTGAATTACATTGG+AGG - chr1_1:63066607-63066626 Msa0035050:intron 35.0%
ACTCTTGAATTACATTGGAG+GGG - chr1_1:63066609-63066628 Msa0035050:intron 35.0%
!! TCTGGGATTTTATCAAAGGT+AGG - chr1_1:63066640-63066659 Msa0035050:intron 35.0%
TGCAATTGTTTGAGCTGTTA+TGG - chr1_1:63066696-63066715 Msa0035050:intron 35.0%
! AGCTGTTATGGTGTCAAATA+AGG - chr1_1:63066708-63066727 Msa0035050:intron 35.0%
AAATAAGGCGAAAGTGAAAG+AGG - chr1_1:63066723-63066742 Msa0035050:intron 35.0%
! CTTCATCATGTCTTGATGAT+TGG - chr1_1:63066967-63066986 Msa0035050:intron 35.0%
!! GCCTTTTGTTTAATTGCAGA+CGG - chr1_1:63067130-63067149 Msa0035050:intron 35.0%
TCCGTCTGCAATTAAACAAA+AGG + chr1_1:63067134-63067153 None:intergenic 35.0%
!! TTTTGTTTAATTGCAGACGG+AGG - chr1_1:63067133-63067152 Msa0035050:intron 35.0%
TTTGTTTAATTGCAGACGGA+GGG - chr1_1:63067134-63067153 Msa0035050:intron 35.0%
CCTGAGCATTTGGATTTATA+AGG + chr1_1:63067199-63067218 None:intergenic 35.0%
CCTTATAAATCCAAATGCTC+AGG - chr1_1:63067196-63067215 Msa0035050:CDS 35.0%
GTCAAAATCTACAAAATGGG+GGG + chr1_1:63067582-63067601 None:intergenic 35.0%
GGTCAAAATCTACAAAATGG+GGG + chr1_1:63067583-63067602 None:intergenic 35.0%
CAGACATTGGACAACATATC+CGG - chr1_1:63061838-63061857 Msa0035050:three_prime_UTR 40.0%
! GGGGGTGTAGAAATGAATAA+CGG + chr1_1:63061919-63061938 None:intergenic 40.0%
GAAGAAGGTGAGTATAACCA+TGG + chr1_1:63061966-63061985 None:intergenic 40.0%
!! TCCGGAATTTGATTTTGAGG+TGG + chr1_1:63062143-63062162 None:intergenic 40.0%
!! CTCTCCGGAATTTGATTTTG+AGG + chr1_1:63062146-63062165 None:intergenic 40.0%
TGGTGGGAATATTATTACCG+TGG - chr1_1:63062291-63062310 Msa0035050:CDS 40.0%
ATTATTACCGTGGAGAGAGA+TGG - chr1_1:63062301-63062320 Msa0035050:CDS 40.0%
TTATTACCGTGGAGAGAGAT+GGG - chr1_1:63062302-63062321 Msa0035050:CDS 40.0%
TGGTCCTCGAATGTGTATTT+AGG - chr1_1:63062556-63062575 Msa0035050:intron 40.0%
AGAGCCTAAATACACATTCG+AGG + chr1_1:63062563-63062582 None:intergenic 40.0%
ACACCTAGTTTATCCGCTAT+CGG + chr1_1:63062641-63062660 None:intergenic 40.0%
ATGGCCAAATTAGACCTGTT+TGG + chr1_1:63062848-63062867 None:intergenic 40.0%
TATTACCAACATGTGTGAGG+CGG + chr1_1:63063098-63063117 None:intergenic 40.0%
CCATATTACCAACATGTGTG+AGG + chr1_1:63063101-63063120 None:intergenic 40.0%
!! CCTCACACATGTTGGTAATA+TGG - chr1_1:63063098-63063117 Msa0035050:intron 40.0%
!!! GGTTGTTTTATTTGTGCAGG+TGG - chr1_1:63063125-63063144 Msa0035050:intron 40.0%
AACACAAATCTAGGTGCATC+AGG + chr1_1:63063186-63063205 None:intergenic 40.0%
ATGCACCTAGATTTGTGTTG+TGG - chr1_1:63063187-63063206 Msa0035050:CDS 40.0%
CCATTCCACAACACAAATCT+AGG + chr1_1:63063195-63063214 None:intergenic 40.0%
CCTAGATTTGTGTTGTGGAA+TGG - chr1_1:63063192-63063211 Msa0035050:CDS 40.0%
TGTTGTGGAATGGGAAATTG+AGG - chr1_1:63063202-63063221 Msa0035050:CDS 40.0%
AAAAGAAAACACACTGGAGG+AGG + chr1_1:63063324-63063343 None:intergenic 40.0%
GGGATCAAAAGAAAACACAC+TGG + chr1_1:63063330-63063349 None:intergenic 40.0%
ACTGGCAGGATAAATAATGC+AGG - chr1_1:63063395-63063414 Msa0035050:intron 40.0%
TATCAGGCGTTCAAAAACCT+CGG + chr1_1:63063517-63063536 None:intergenic 40.0%
CTGAACAAAAAGGCTCTATC+AGG + chr1_1:63063533-63063552 None:intergenic 40.0%
! CTGATAGAGCCTTTTTGTTC+AGG - chr1_1:63063531-63063550 Msa0035050:intron 40.0%
CAGGACAATGAAAAAGTTGG+TGG + chr1_1:63063563-63063582 None:intergenic 40.0%
AAAGTAGGTAGTTGGCTGAA+AGG + chr1_1:63063616-63063635 None:intergenic 40.0%
TCAGTTCTTGGCGAATGAAA+TGG - chr1_1:63063688-63063707 Msa0035050:intron 40.0%
!!! AGTTTTTAAGAGACGGGTTG+GGG + chr1_1:63063793-63063812 None:intergenic 40.0%
!! CAGTTTTTAAGAGACGGGTT+GGG + chr1_1:63063794-63063813 None:intergenic 40.0%
!! TCAGTTTTTAAGAGACGGGT+TGG + chr1_1:63063795-63063814 None:intergenic 40.0%
! GCTTGAGCTATGTGTGATTT+TGG - chr1_1:63063992-63064011 Msa0035050:intron 40.0%
! AACAAATGAAAAGGAGCGCA+AGG + chr1_1:63064079-63064098 None:intergenic 40.0%
!!! GGTCTCTGTAGTTTTTTTCG+AGG + chr1_1:63064416-63064435 None:intergenic 40.0%
TCATATACAGGTGTCTATGC+CGG - chr1_1:63064663-63064682 Msa0035050:intron 40.0%
AATGGTGGTAGCATTATTGG+TGG - chr1_1:63064744-63064763 Msa0035050:CDS 40.0%
TCTCTCCTGTATTGCTTTGA+AGG + chr1_1:63064772-63064791 None:intergenic 40.0%
GTCAAACTGTTGGATCATTC+CGG - chr1_1:63064921-63064940 Msa0035050:intron 40.0%
AGAAATTGCGTTTGGCAACA+TGG + chr1_1:63064957-63064976 None:intergenic 40.0%
TACCTAGCAGAAATTGCGTT+TGG + chr1_1:63064965-63064984 None:intergenic 40.0%
TGTTTCACCAGTATTCACGT+TGG - chr1_1:63065015-63065034 Msa0035050:intron 40.0%
AACATCACCAACGTGAATAC+TGG + chr1_1:63065025-63065044 None:intergenic 40.0%
TTACAGGAACACGATTCACT+AGG + chr1_1:63065048-63065067 None:intergenic 40.0%
CAAAGAAACAACTCCTTCTG+GGG + chr1_1:63065165-63065184 None:intergenic 40.0%
GCAAAGAAACAACTCCTTCT+GGG + chr1_1:63065166-63065185 None:intergenic 40.0%
TGCAAAGAAACAACTCCTTC+TGG + chr1_1:63065167-63065186 None:intergenic 40.0%
CAGTCAGGCACAAATAAACA+AGG + chr1_1:63065829-63065848 None:intergenic 40.0%
GTTATGTAGTTGTAGTGCAG+TGG - chr1_1:63065898-63065917 Msa0035050:intron 40.0%
GCTATGTAGGATCTAAGGAA+TGG + chr1_1:63065982-63066001 None:intergenic 40.0%
CTTCTGCTATGTAGGATCTA+AGG + chr1_1:63065987-63066006 None:intergenic 40.0%
GGTTGTTTACTTCAAAGCCA+GGG - chr1_1:63066035-63066054 Msa0035050:intron 40.0%
AGTCGCCATCATATAAGTTG+AGG - chr1_1:63066174-63066193 Msa0035050:intron 40.0%
! GGCTTCTTTTGGATAGGAAA+TGG + chr1_1:63066291-63066310 None:intergenic 40.0%
! CTTGATAGATGGTGAGTTGA+AGG - chr1_1:63066325-63066344 Msa0035050:CDS 40.0%
! GATTTGGTCAATTGCATCCA+CGG - chr1_1:63066348-63066367 Msa0035050:intron 40.0%
TACCTAATGTTTGCACTCCT+TGG + chr1_1:63066376-63066395 None:intergenic 40.0%
! TTTTCCTTCTTCGCTGTTGT+TGG - chr1_1:63066749-63066768 Msa0035050:intron 40.0%
TAGTCGTTCTTTACTATCCC+TGG + chr1_1:63066780-63066799 None:intergenic 40.0%
AACACTTGAAACAAGGTCAC+TGG + chr1_1:63066834-63066853 None:intergenic 40.0%
!! CTTCCATAGAAGAGTACTAC+AGG - chr1_1:63066933-63066952 Msa0035050:intron 40.0%
! CATCATGTCTTGATGATTGG+TGG - chr1_1:63066970-63066989 Msa0035050:intron 40.0%
! TCTTGATGATTGGTGGTTCT+GGG - chr1_1:63066977-63066996 Msa0035050:intron 40.0%
ACAATTGGATCCTGAGCATT+TGG + chr1_1:63067209-63067228 None:intergenic 40.0%
! TGCTCAGGATCCAATTGTTT+TGG - chr1_1:63067211-63067230 Msa0035050:CDS 40.0%
! GCTCAGGATCCAATTGTTTT+GGG - chr1_1:63067212-63067231 Msa0035050:CDS 40.0%
!! CTCAGGATCCAATTGTTTTG+GGG - chr1_1:63067213-63067232 Msa0035050:CDS 40.0%
!!! TCAGGATCCAATTGTTTTGG+GGG - chr1_1:63067214-63067233 Msa0035050:CDS 40.0%
ACTCTAACCCCCAAAACAAT+TGG + chr1_1:63067224-63067243 None:intergenic 40.0%
AAGAACTGTGGAATAGCTTG+AGG + chr1_1:63067251-63067270 None:intergenic 40.0%
GCTATTCCACAGTTCTTAGT+TGG - chr1_1:63067254-63067273 Msa0035050:CDS 40.0%
AGATGTCCAACTAAGAACTG+TGG + chr1_1:63067263-63067282 None:intergenic 40.0%
!! TTATTGTGTTAGGTTCTGGG+TGG - chr1_1:63067490-63067509 Msa0035050:CDS 40.0%
TTGCTAAATGCATGAGCAAG+TGG + chr1_1:63067540-63067559 None:intergenic 40.0%
ACTTGCTCATGCATTTAGCA+AGG - chr1_1:63067539-63067558 Msa0035050:exon 40.0%
AAAATCTACAAAATGGGGGG+TGG + chr1_1:63067579-63067598 None:intergenic 40.0%
! GTTTGCTTGCCACTTGCAAT+TGG + chr1_1:63061817-63061836 None:intergenic 45.0%
TGGCAAGCAAACACAGACAT+TGG - chr1_1:63061825-63061844 Msa0035050:three_prime_UTR 45.0%
TGAAGGTGGAGAAAGAAGGA+GGG + chr1_1:63061939-63061958 None:intergenic 45.0%
AAGGTGAGTATAACCATGGC+GGG + chr1_1:63061962-63061981 None:intergenic 45.0%
GAAGGTGAGTATAACCATGG+CGG + chr1_1:63061963-63061982 None:intergenic 45.0%
!! CAGTGGACTATGTATTGCTC+AGG - chr1_1:63062204-63062223 Msa0035050:CDS 45.0%
CCTCGGTAACAACAACATTG+GGG + chr1_1:63062258-63062277 None:intergenic 45.0%
GCCTCGGTAACAACAACATT+GGG + chr1_1:63062259-63062278 None:intergenic 45.0%
AAGAAACCCATCTCTCTCCA+CGG + chr1_1:63062311-63062330 None:intergenic 45.0%
! TGGAGAGAGATGGGTTTCTT+TGG - chr1_1:63062311-63062330 Msa0035050:CDS 45.0%
! GGAGAGAGATGGGTTTCTTT+GGG - chr1_1:63062312-63062331 Msa0035050:CDS 45.0%
! GATGGGTTTCTTTGGGAAGA+AGG - chr1_1:63062319-63062338 Msa0035050:CDS 45.0%
ATGGTGAGCATAGGATCAGA+AGG + chr1_1:63062361-63062380 None:intergenic 45.0%
TTCTGATCCTATGCTCACCA+TGG - chr1_1:63062360-63062379 Msa0035050:intron 45.0%
GTAGATAAGCTAGCCGATAG+CGG - chr1_1:63062625-63062644 Msa0035050:intron 45.0%
!! TAGCCGATAGCGGATAAACT+AGG - chr1_1:63062635-63062654 Msa0035050:intron 45.0%
TTATTTGTGCAGGTGGACAG+TGG - chr1_1:63063132-63063151 Msa0035050:CDS 45.0%
!! TGAGTATTGGTGGCAAGATC+AGG - chr1_1:63063268-63063287 Msa0035050:intron 45.0%
!! GAGTATTGGTGGCAAGATCA+GGG - chr1_1:63063269-63063288 Msa0035050:intron 45.0%
AGTTCGTGCGTCGAAATCTT+GGG - chr1_1:63063490-63063509 Msa0035050:intron 45.0%
!! TGGCTCTGACCTGAACAAAA+AGG + chr1_1:63063543-63063562 None:intergenic 45.0%
CTCCGCCAGAACATAAAAGT+AGG + chr1_1:63063631-63063650 None:intergenic 45.0%
!!! GTTTTTAAGAGACGGGTTGG+GGG + chr1_1:63063792-63063811 None:intergenic 45.0%
! GAAGTAAGCTTGTCGCTTCT+TGG + chr1_1:63064557-63064576 None:intergenic 45.0%
!! AAGCAGCTTTTGGGAAAGTG+TGG - chr1_1:63064709-63064728 Msa0035050:CDS 45.0%
TGGAGCCTTCAAAGCAATAC+AGG - chr1_1:63064764-63064783 Msa0035050:CDS 45.0%
!! TATTTTTACGGATCACGGGG+TGG + chr1_1:63064810-63064829 None:intergenic 45.0%
! ACAGTTTGACCCTTTGGCTT+TGG + chr1_1:63064911-63064930 None:intergenic 45.0%
AAGCCAAAGGGTCAAACTGT+TGG - chr1_1:63064911-63064930 Msa0035050:intron 45.0%
GATCCAACAGTTTGACCCTT+TGG + chr1_1:63064917-63064936 None:intergenic 45.0%
AACTGTTGGATCATTCCGGA+AGG - chr1_1:63064925-63064944 Msa0035050:intron 45.0%
ACTGTTGGATCATTCCGGAA+GGG - chr1_1:63064926-63064945 Msa0035050:intron 45.0%
TGCCAAACGCAATTTCTGCT+AGG - chr1_1:63064960-63064979 Msa0035050:intron 45.0%
ATCGTGTTCCTGTAACCTGT+TGG - chr1_1:63065053-63065072 Msa0035050:intron 45.0%
TTGTTACCTAACCTGCCAAC+AGG + chr1_1:63065071-63065090 None:intergenic 45.0%
TGTTGGCAGGTTAGGTAACA+AGG - chr1_1:63065070-63065089 Msa0035050:intron 45.0%
TTGACGTATGAAACCCCAGA+AGG - chr1_1:63065149-63065168 Msa0035050:intron 45.0%
ACTAGCAACATGGGAAGGAA+TGG + chr1_1:63065210-63065229 None:intergenic 45.0%
!! AATGGACTAGCAACATGGGA+AGG + chr1_1:63065215-63065234 None:intergenic 45.0%
!! CAGCAATGGACTAGCAACAT+GGG + chr1_1:63065219-63065238 None:intergenic 45.0%
AGGAATGGCCGGAAACATTA+CGG + chr1_1:63065967-63065986 None:intergenic 45.0%
TGTAGGATCTAAGGAATGGC+CGG + chr1_1:63065978-63065997 None:intergenic 45.0%
CGGTTGTTTACTTCAAAGCC+AGG - chr1_1:63066034-63066053 Msa0035050:intron 45.0%
TACTTCAAAGCCAGGGTTTC+AGG - chr1_1:63066042-63066061 Msa0035050:intron 45.0%
CATCACATCCCTTGTGAGAT+AGG - chr1_1:63066072-63066091 Msa0035050:intron 45.0%
ATCCCTTGTGAGATAGGCTT+TGG - chr1_1:63066078-63066097 Msa0035050:intron 45.0%
AGCCAAAGCCTATCTCACAA+GGG + chr1_1:63066083-63066102 None:intergenic 45.0%
AAGCCAAAGCCTATCTCACA+AGG + chr1_1:63066084-63066103 None:intergenic 45.0%
GCGACTATCATGCCAGAAAT+TGG + chr1_1:63066160-63066179 None:intergenic 45.0%
! GATGGTGAGTTGAAGGGATT+TGG - chr1_1:63066332-63066351 Msa0035050:CDS 45.0%
! AGCCAAGGAGTGCAAACATT+AGG - chr1_1:63066371-63066390 Msa0035050:intron 45.0%
AATCGCGTGGCAACTTAAAG+TGG + chr1_1:63066436-63066455 None:intergenic 45.0%
TTCAAGAGTAGAACCCTTCC+AGG + chr1_1:63066598-63066617 None:intergenic 45.0%
GTTTCCAACAACAGCGAAGA+AGG + chr1_1:63066756-63066775 None:intergenic 45.0%
GACATGATGAAGCAGTACAG+CGG + chr1_1:63066959-63066978 None:intergenic 45.0%
! GTCTTGATGATTGGTGGTTC+TGG - chr1_1:63066976-63066995 Msa0035050:intron 45.0%
!!! GATTGGTGGTTCTGGGTTTT+AGG - chr1_1:63066984-63067003 Msa0035050:intron 45.0%
!!! TTGTTTTGGGGGTTAGAGTG+TGG - chr1_1:63067225-63067244 Msa0035050:CDS 45.0%
!! TATGTGTCTGGTGTTGCCTT+GGG - chr1_1:63067353-63067372 Msa0035050:CDS 45.0%
TACTTCAGCTGCTATCTCGT+AGG + chr1_1:63067396-63067415 None:intergenic 45.0%
!!! TTTTCTAAAAAAAAAAAATA+TGG - chr1_1:63063851-63063870 Msa0035050:intron 5.0%
!!! TTTTAAATATTAATCAAATA+TGG + chr1_1:63064377-63064396 None:intergenic 5.0%
AAGGTGGAGAAAGAAGGAGG+GGG + chr1_1:63061937-63061956 None:intergenic 50.0%
GAAGGTGGAGAAAGAAGGAG+GGG + chr1_1:63061938-63061957 None:intergenic 50.0%
GTGAAGGTGGAGAAAGAAGG+AGG + chr1_1:63061940-63061959 None:intergenic 50.0%
!! AGTATAACCATGGCGGGTGA+AGG + chr1_1:63061956-63061975 None:intergenic 50.0%
GGAAAAGGGTTTGAGAGGGT+GGG + chr1_1:63061988-63062007 None:intergenic 50.0%
ATGGAGATGAGGGCGGAAAA+GGG + chr1_1:63062002-63062021 None:intergenic 50.0%
AATGGAGATGAGGGCGGAAA+AGG + chr1_1:63062003-63062022 None:intergenic 50.0%
TTGAATTGGAGGAGGGGAGA+GGG + chr1_1:63062027-63062046 None:intergenic 50.0%
TTTGAATTGGAGGAGGGGAG+AGG + chr1_1:63062028-63062047 None:intergenic 50.0%
ATTCCTCCGCAATGGAGCAA+CGG + chr1_1:63062099-63062118 None:intergenic 50.0%
!!! GGTGGTTTTAGTCGGAGATG+CGG + chr1_1:63062125-63062144 None:intergenic 50.0%
ACCAACAACCACACAGTCGA+CGG + chr1_1:63062176-63062195 None:intergenic 50.0%
! CCCCAATGTTGTTGTTACCG+AGG - chr1_1:63062255-63062274 Msa0035050:CDS 50.0%
CGCCTCGGTAACAACAACAT+TGG + chr1_1:63062260-63062279 None:intergenic 50.0%
ACCAACTCGATCTTTCGCCT+CGG + chr1_1:63062275-63062294 None:intergenic 50.0%
!! AGGCGAAAGATCGAGTTGGT+GGG - chr1_1:63062275-63062294 Msa0035050:CDS 50.0%
TGATCCTATGCTCACCATGG+TGG - chr1_1:63062363-63062382 Msa0035050:intron 50.0%
CATACCACCATGGTGAGCAT+AGG + chr1_1:63062370-63062389 None:intergenic 50.0%
CGTAATGTGGCGCATGCAAT+TGG - chr1_1:63062426-63062445 Msa0035050:intron 50.0%
GTGGAATGGGAAATTGAGGC+CGG - chr1_1:63063206-63063225 Msa0035050:CDS 50.0%
!! GGCAAATCAGTTGGCTTTCC+CGG + chr1_1:63063234-63063253 None:intergenic 50.0%
GAAAACACACTGGAGGAGGA+GGG + chr1_1:63063320-63063339 None:intergenic 50.0%
AGAAAACACACTGGAGGAGG+AGG + chr1_1:63063321-63063340 None:intergenic 50.0%
GTGACAGGGTCATGAGGAAT+CGG - chr1_1:63063461-63063480 Msa0035050:intron 50.0%
GAGTTCGTGCGTCGAAATCT+TGG - chr1_1:63063489-63063508 Msa0035050:intron 50.0%
GTTCGTGCGTCGAAATCTTG+GGG - chr1_1:63063491-63063510 Msa0035050:intron 50.0%
TCAAATCCATCGTTGAGCGC+CGG - chr1_1:63064292-63064311 Msa0035050:CDS 50.0%
AAATATCCGGCGCTCAACGA+TGG + chr1_1:63064301-63064320 None:intergenic 50.0%
!! CAGCTTTTGGGAAAGTGTGG+AGG - chr1_1:63064712-63064731 Msa0035050:CDS 50.0%
GTGTGGAGGCTCGAACAAAA+TGG - chr1_1:63064726-63064745 Msa0035050:CDS 50.0%
TGGAGGCTCGAACAAAATGG+TGG - chr1_1:63064729-63064748 Msa0035050:CDS 50.0%
GCAACATGGTAAGTCCCTTC+CGG + chr1_1:63064943-63064962 None:intergenic 50.0%
TGTTCCTGTAACCTGTTGGC+AGG - chr1_1:63065057-63065076 Msa0035050:intron 50.0%
CTAACCTGCCAACAGGTTAC+AGG + chr1_1:63065064-63065083 None:intergenic 50.0%
CTGTAACCTGTTGGCAGGTT+AGG - chr1_1:63065062-63065081 Msa0035050:intron 50.0%
!! GCAGCAATGGACTAGCAACA+TGG + chr1_1:63065220-63065239 None:intergenic 50.0%
ACAGACAGTGGTTGCAGCAA+TGG + chr1_1:63065233-63065252 None:intergenic 50.0%
ACGTCTTGGTACCTTACTGC+AGG - chr1_1:63065366-63065385 Msa0035050:intron 50.0%
TGGCCTACTGCAAGAGCTTA+TGG - chr1_1:63065703-63065722 Msa0035050:intron 50.0%
CAGCCATAAGCTCTTGCAGT+AGG + chr1_1:63065709-63065728 None:intergenic 50.0%
GGAATGGCCGGAAACATTAC+GGG + chr1_1:63065966-63065985 None:intergenic 50.0%
AAAGCCAGGGTTTCAGGATC+AGG - chr1_1:63066048-63066067 Msa0035050:intron 50.0%
ATGTCCTGATCCTGAAACCC+TGG + chr1_1:63066055-63066074 None:intergenic 50.0%
GAAATGGAAACTGCCGCAAC+TGG + chr1_1:63066275-63066294 None:intergenic 50.0%
TGGTGCTCGGTTAGGGAAAA+GGG + chr1_1:63066575-63066594 None:intergenic 50.0%
AAGAGTAGAACCCTTCCAGG+TGG + chr1_1:63066595-63066614 None:intergenic 50.0%
ATTGGAGGGGCTACCAATTC+TGG - chr1_1:63066622-63066641 Msa0035050:intron 50.0%
TTGGAGGGGCTACCAATTCT+GGG - chr1_1:63066623-63066642 Msa0035050:intron 50.0%
TCGCTGTTGTTGGAAACTCC+AGG - chr1_1:63066759-63066778 Msa0035050:intron 50.0%
CGCTGTTGTTGGAAACTCCA+GGG - chr1_1:63066760-63066779 Msa0035050:intron 50.0%
AAACAAGGTCACTGGACGTC+TGG + chr1_1:63066826-63066845 None:intergenic 50.0%
CGGCCTGTAGTACTCTTCTA+TGG + chr1_1:63066939-63066958 None:intergenic 50.0%
AAGGAACAGCCCCTCAAATC+CGG + chr1_1:63067324-63067343 None:intergenic 50.0%
GATTTGAGGGGCTGTTCCTT+GGG - chr1_1:63067324-63067343 Msa0035050:CDS 50.0%
ATTTGAGGGGCTGTTCCTTG+GGG - chr1_1:63067325-63067344 Msa0035050:CDS 50.0%
!! CTATGTGTCTGGTGTTGCCT+TGG - chr1_1:63067352-63067371 Msa0035050:CDS 50.0%
! CGCAGAGAGTGTACAAGTAG+CGG - chr1_1:63067429-63067448 Msa0035050:CDS 50.0%
TTCTGGGTGGCTTCTGTTAC+AGG - chr1_1:63067503-63067522 Msa0035050:CDS 50.0%
CGGGTGAAGGTGGAGAAAGA+AGG + chr1_1:63061943-63061962 None:intergenic 55.0%
!! ATAACCATGGCGGGTGAAGG+TGG + chr1_1:63061953-63061972 None:intergenic 55.0%
GGTTTGAGAGGGTGGGAAGA+AGG + chr1_1:63061981-63062000 None:intergenic 55.0%
CGGAAAAGGGTTTGAGAGGG+TGG + chr1_1:63061989-63062008 None:intergenic 55.0%
GGGCGGAAAAGGGTTTGAGA+GGG + chr1_1:63061992-63062011 None:intergenic 55.0%
AGGGCGGAAAAGGGTTTGAG+AGG + chr1_1:63061993-63062012 None:intergenic 55.0%
GGAGAGGGGAATGGAGATGA+GGG + chr1_1:63062012-63062031 None:intergenic 55.0%
TGAATTGGAGGAGGGGAGAG+GGG + chr1_1:63062026-63062045 None:intergenic 55.0%
GGAGACGGAGAATGGGGTTA+TGG + chr1_1:63062078-63062097 None:intergenic 55.0%
AGCAACGGAGACGGAGAATG+GGG + chr1_1:63062084-63062103 None:intergenic 55.0%
GAGCAACGGAGACGGAGAAT+GGG + chr1_1:63062085-63062104 None:intergenic 55.0%
!! GGTTTTAGTCGGAGATGCGG+TGG + chr1_1:63062122-63062141 None:intergenic 55.0%
AACCACACAGTCGACGGATG+AGG + chr1_1:63062170-63062189 None:intergenic 55.0%
! TCCGTCGACTGTGTGGTTGT+TGG - chr1_1:63062172-63062191 Msa0035050:CDS 55.0%
GTCGACTGTGTGGTTGTTGG+TGG - chr1_1:63062175-63062194 Msa0035050:CDS 55.0%
! GACTGTGTGGTTGTTGGTGG+TGG - chr1_1:63062178-63062197 Msa0035050:CDS 55.0%
!! GTTGTTGGTGGTGGCATCAG+TGG - chr1_1:63062187-63062206 Msa0035050:CDS 55.0%
ACCGAGGCGAAAGATCGAGT+TGG - chr1_1:63062271-63062290 Msa0035050:CDS 55.0%
!! GAGGCGAAAGATCGAGTTGG+TGG - chr1_1:63062274-63062293 Msa0035050:CDS 55.0%
TGACACCGCCTCACACATGT+TGG - chr1_1:63063090-63063109 Msa0035050:intron 55.0%
GCAGGTGGACAGTGGTTTGA+AGG - chr1_1:63063140-63063159 Msa0035050:CDS 55.0%
! ATTGGTGGCAAGATCAGGGC+TGG - chr1_1:63063273-63063292 Msa0035050:intron 55.0%
ACGAAGGTGACAGGGTCATG+AGG - chr1_1:63063455-63063474 Msa0035050:intron 55.0%
!! TTAAGAGACGGGTTGGGGGA+TGG + chr1_1:63063788-63063807 None:intergenic 55.0%
TAGGCGTCTGCCAAAGCCAA+AGG - chr1_1:63064898-63064917 Msa0035050:intron 55.0%
AGGCGTCTGCCAAAGCCAAA+GGG - chr1_1:63064899-63064918 Msa0035050:intron 55.0%
! GAAAGTGCATCTGCAGCAGC+AGG + chr1_1:63066236-63066255 None:intergenic 55.0%
ATGGAAACTGCCGCAACTGG+AGG + chr1_1:63066272-63066291 None:intergenic 55.0%
CAATTGCATCCACGGAGCCA+AGG - chr1_1:63066356-63066375 Msa0035050:intron 55.0%
GTGGTGCTCGGTTAGGGAAA+AGG + chr1_1:63066576-63066595 None:intergenic 55.0%
TTCCAGGTGGTGCTCGGTTA+GGG + chr1_1:63066582-63066601 None:intergenic 55.0%
TAACCGAGCACCACCTGGAA+GGG - chr1_1:63066582-63066601 Msa0035050:intron 55.0%
GGATTTGAGGGGCTGTTCCT+TGG - chr1_1:63067323-63067342 Msa0035050:CDS 55.0%
TTTGAGGGGCTGTTCCTTGG+GGG - chr1_1:63067326-63067345 Msa0035050:CDS 55.0%
CAGACACATAGTTGCCCCCA+AGG + chr1_1:63067343-63067362 None:intergenic 55.0%
CTTGGGGGCAACTATGTGTC+TGG - chr1_1:63067341-63067360 Msa0035050:CDS 55.0%
!! TGTCTGGTGTTGCCTTGGGA+AGG - chr1_1:63067357-63067376 Msa0035050:CDS 55.0%
! TGTTGCCTTGGGAAGGTGTG+TGG - chr1_1:63067364-63067383 Msa0035050:CDS 55.0%
TTCTCCACCTTCACCCGCCA+TGG - chr1_1:63061946-63061965 Msa0035050:three_prime_UTR 60.0%
GAGGGGAATGGAGATGAGGG+CGG + chr1_1:63062009-63062028 None:intergenic 60.0%
GGGAGAGGGGAATGGAGATG+AGG + chr1_1:63062013-63062032 None:intergenic 60.0%
GGAGCAACGGAGACGGAGAA+TGG + chr1_1:63062086-63062105 None:intergenic 60.0%
CCGCAATGGAGCAACGGAGA+CGG + chr1_1:63062093-63062112 None:intergenic 60.0%
CCGTCTCCGTTGCTCCATTG+CGG - chr1_1:63062090-63062109 Msa0035050:CDS 60.0%
TCTCCGTTGCTCCATTGCGG+AGG - chr1_1:63062093-63062112 Msa0035050:CDS 60.0%
! TGCGGTGGATTCCTCCGCAA+TGG + chr1_1:63062107-63062126 None:intergenic 60.0%
GTCGACGGATGAGGACTCTC+CGG + chr1_1:63062161-63062180 None:intergenic 60.0%
! GTCCTCATCCGTCGACTGTG+TGG - chr1_1:63062165-63062184 Msa0035050:CDS 60.0%
TGGGAAATTGAGGCCGGTGC+CGG - chr1_1:63063212-63063231 Msa0035050:CDS 60.0%
!! TCAGTTGGCTTTCCCGGCAC+CGG + chr1_1:63063228-63063247 None:intergenic 60.0%
!! GGCAAGATCAGGGCTGGCTT+TGG - chr1_1:63063279-63063298 Msa0035050:intron 60.0%
!! AGGGCTGGCTTTGGAGCACT+TGG - chr1_1:63063288-63063307 Msa0035050:intron 60.0%
GTTTGCACTCCTTGGCTCCG+TGG + chr1_1:63066368-63066387 None:intergenic 60.0%
TTCCCTAACCGAGCACCACC+TGG - chr1_1:63066577-63066596 Msa0035050:intron 60.0%
CTTCCAGGTGGTGCTCGGTT+AGG + chr1_1:63066583-63066602 None:intergenic 60.0%
CTAACCGAGCACCACCTGGA+AGG - chr1_1:63066581-63066600 Msa0035050:intron 60.0%
GAACCCTTCCAGGTGGTGCT+CGG + chr1_1:63066588-63066607 None:intergenic 60.0%
! TGCCTTGGGAAGGTGTGTGG+AGG - chr1_1:63067367-63067386 Msa0035050:CDS 60.0%
! GCCTTGGGAAGGTGTGTGGA+GGG - chr1_1:63067368-63067387 Msa0035050:CDS 60.0%
TCCCTCCACACACCTTCCCA+AGG + chr1_1:63067372-63067391 None:intergenic 60.0%
TGGAGGAGGGGAGAGGGGAA+TGG + chr1_1:63062021-63062040 None:intergenic 65.0%
GGGAAATTGAGGCCGGTGCC+GGG - chr1_1:63063213-63063232 Msa0035050:CDS 65.0%
GCGTCGAAATCTTGGGGCCG+AGG - chr1_1:63063497-63063516 Msa0035050:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 63061807 63067712 63061807 ID=Msa0035050;Name=Msa0035050
chr1_1 mRNA 63061807 63067712 63061807 ID=Msa0035050-mRNA-1;Parent=Msa0035050;Name=Msa0035050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=138|0.88|0.9|1|0.88|0.8|10|264|545
chr1_1 exon 63061807 63062370 63061807 ID=Msa0035050-mRNA-1:exon:20034;Parent=Msa0035050-mRNA-1
chr1_1 exon 63062862 63062965 63062862 ID=Msa0035050-mRNA-1:exon:20033;Parent=Msa0035050-mRNA-1
chr1_1 exon 63063127 63063286 63063127 ID=Msa0035050-mRNA-1:exon:20032;Parent=Msa0035050-mRNA-1
chr1_1 exon 63064269 63064440 63064269 ID=Msa0035050-mRNA-1:exon:20031;Parent=Msa0035050-mRNA-1
chr1_1 exon 63064538 63064618 63064538 ID=Msa0035050-mRNA-1:exon:20030;Parent=Msa0035050-mRNA-1
chr1_1 exon 63064699 63064846 63064699 ID=Msa0035050-mRNA-1:exon:20029;Parent=Msa0035050-mRNA-1
chr1_1 exon 63065967 63066051 63065967 ID=Msa0035050-mRNA-1:exon:20028;Parent=Msa0035050-mRNA-1
chr1_1 exon 63066190 63066357 63066190 ID=Msa0035050-mRNA-1:exon:20027;Parent=Msa0035050-mRNA-1
chr1_1 exon 63067135 63067581 63067135 ID=Msa0035050-mRNA-1:exon:20026;Parent=Msa0035050-mRNA-1
chr1_1 exon 63067602 63067712 63067602 ID=Msa0035050-mRNA-1:exon:20025;Parent=Msa0035050-mRNA-1
chr1_1 five_prime_UTR 63067602 63067712 63067602 ID=Msa0035050-mRNA-1:five_prime_utr;Parent=Msa0035050-mRNA-1
chr1_1 five_prime_UTR 63067555 63067581 63067555 ID=Msa0035050-mRNA-1:five_prime_utr;Parent=Msa0035050-mRNA-1
chr1_1 CDS 63067135 63067554 63067135 ID=Msa0035050-mRNA-1:cds;Parent=Msa0035050-mRNA-1
chr1_1 CDS 63066190 63066357 63066190 ID=Msa0035050-mRNA-1:cds;Parent=Msa0035050-mRNA-1
chr1_1 CDS 63065967 63066051 63065967 ID=Msa0035050-mRNA-1:cds;Parent=Msa0035050-mRNA-1
chr1_1 CDS 63064699 63064846 63064699 ID=Msa0035050-mRNA-1:cds;Parent=Msa0035050-mRNA-1
chr1_1 CDS 63064538 63064618 63064538 ID=Msa0035050-mRNA-1:cds;Parent=Msa0035050-mRNA-1
chr1_1 CDS 63064269 63064440 63064269 ID=Msa0035050-mRNA-1:cds;Parent=Msa0035050-mRNA-1
chr1_1 CDS 63063127 63063286 63063127 ID=Msa0035050-mRNA-1:cds;Parent=Msa0035050-mRNA-1
chr1_1 CDS 63062862 63062965 63062862 ID=Msa0035050-mRNA-1:cds;Parent=Msa0035050-mRNA-1
chr1_1 CDS 63062071 63062370 63062071 ID=Msa0035050-mRNA-1:cds;Parent=Msa0035050-mRNA-1
chr1_1 three_prime_UTR 63061807 63062070 63061807 ID=Msa0035050-mRNA-1:three_prime_utr;Parent=Msa0035050-mRNA-1
Gene Sequence

>Msa0035050

ATGGTTATACTCACCTTCTTCCCACCCTCTCAAACCCTTTTCCGCCCTCATCTCCATTCCCCTCTCCCCTCCTCCAATTCAAAATCAAAATTCATTCGCAATCGCAGTCACCATAACCCCATTCTCCGTCTCCGTTGCTCCATTGCGGAGGAATCCACCGCATCTCCGACTAAAACCACCTCAAAATCAAATTCCGGAGAGTCCTCATCCGTCGACTGTGTGGTTGTTGGTGGTGGCATCAGTGGACTATGTATTGCTCAGGCTCTTTCTACAAAACATGCTGATGGTGTCCCCAATGTTGTTGTTACCGAGGCGAAAGATCGAGTTGGTGGGAATATTATTACCGTGGAGAGAGATGGGTTTCTTTGGGAAGAAGGTCCTAATAGTTTTCAACCTTCTGATCCTATGCTCACCATGGTGGACGATCTTGTTTTGGGTGATCCTGATGCACCTAGATTTGTGTTGTGGAATGGGAAATTGAGGCCGGTGCCGGGAAAGCCAACTGATTTGCCTTTCTTTGACTTAATGAGTATTGGTGGCAAGATCAGGGCTGGCTTTGGAGCACTTGGAATTCGCCCTCCTCCTCCAGGTCATGAGGAATCGGTTGAAGAGTTCGTGCGTCGAAATCTTGGGGCCGAGGTTTTTGAACGCCTGATAGAGCCTTTTTGTTCAGGTGTCTATGCCGGCGATCCTTCAAAATTAAGTATGAAAGCAGCTTTTGGGAAAGTGTGGAGGCTCGAACAAAATGGTGGTAGCATTATTGGTGGAGCCTTCAAAGCAATACAGGAGAGAAATAAAGCTTCAAAACCACCCCGTGATCCGCGTCTGCCAAAGCCAAAGGGTCAAACTGTTGGATCATTCCGGAAGGGACTTACCATGTTGCCAAACGCAATTTCTGCTAGGTTAGGTAACAAGGTGAAGTTATCTTGGAAGCTTTTAAGTATTAGTAAACTGGATAGTGGAGAGTACAGTTTGACGTATGAAACCCCAGAAGGAGTTGTTTCTTTGCAAAGCAAGACTGTTATCATGACCATTCCTTCCCATGTTGCTAGTCCATTGCTGCAACCACTGTCTCCTGCTGCTGCAGATGCACTTTCAAAGTTTTATTATCCTCCAGTTGCGGCAGTTTCCATTTCCTATCCAAAAGAAGCCATTAGATCAGAATGCTTGATAGATGGTGAGTTGAAGGGATTTGGTCAATTGCATCCACGGAGCCAAGGAGTGCAAACATTAGGAACTATATACAGCTCATCCCTTTTCCCTAACCGAGCACCACCTGGAAGGGTTCTACTCTTGAATTACATTGGAGGGGCTACCAATTCTGGGATTTTATCAAAGACGGAGGGTGAACTTGTTGAAGCAGTTGATCGAGATTTGAGAAAAATCCTTATAAATCCAAATGCTCAGGATCCAATTGTTTTGGGGGTTAGAGTGTGGCCTCAAGCTATTCCACAGTTCTTAGTTGGACATCTTGATCTTCTAGATGCTGCTAAAGTTTCTCTTAAAAATACCGGATTTGAGGGGCTGTTCCTTGGGGGCAACTATGTGTCTGGTGTTGCCTTGGGAAGGTGTGTGGAGGGAGCCTACGAGATAGCAGCTGAAGTAAATGATTTTCTCTCGCAGAGAGTGTACAAGTAG
Protein sequence

>Msa0035050

MVILTFFPPSQTLFRPHLHSPLPSSNSKSKFIRNRSHHNPILRLRCSIAEESTASPTKTTSKSNSGESSSVDCVVVGGGISGLCIAQALSTKHADGVPNVVVTEAKDRVGGNIITVERDGFLWEEGPNSFQPSDPMLTMVDDLVLGDPDAPRFVLWNGKLRPVPGKPTDLPFFDLMSIGGKIRAGFGALGIRPPPPGHEESVEEFVRRNLGAEVFERLIEPFCSGVYAGDPSKLSMKAAFGKVWRLEQNGGSIIGGAFKAIQERNKASKPPRDPRLPKPKGQTVGSFRKGLTMLPNAISARLGNKVKLSWKLLSISKLDSGEYSLTYETPEGVVSLQSKTVIMTIPSHVASPLLQPLSPAAADALSKFYYPPVAAVSISYPKEAIRSECLIDGELKGFGQLHPRSQGVQTLGTIYSSSLFPNRAPPGRVLLLNYIGGATNSGILSKTEGELVEAVDRDLRKILINPNAQDPIVLGVRVWPQAIPQFLVGHLDLLDAAKVSLKNTGFEGLFLGGNYVSGVALGRCVEGAYEIAAEVNDFLSQRVYK*