AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0794290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794290 MtrunA17_Chr5g0394371 96.429 336 4 1 1 336 1 328 0.0 673
Msa0794290 MtrunA17_Chr1g0150851 66.445 301 101 0 33 333 42 342 7.16e-154 435
Msa0794290 MtrunA17_Chr3g0136181 62.371 194 73 0 140 333 30 223 1.63e-89 267
Msa0794290 MtrunA17_Chr8g0365071 33.824 272 162 10 8 269 25 288 1.52e-38 139
Msa0794290 MtrunA17_Chr5g0413701 36.323 223 134 6 50 269 72 289 3.85e-37 136
Msa0794290 MtrunA17_Chr3g0117881 31.132 212 139 6 50 259 61 267 1.65e-27 110
Msa0794290 MtrunA17_Chr3g0126551 30.450 289 170 10 7 269 20 303 5.47e-27 108
Msa0794290 MtrunA17_Chr1g0158851 31.858 226 145 6 54 275 95 315 1.07e-23 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794290 AT5G19530.1 61.377 334 127 2 1 333 1 333 1.63e-156 442
Msa0794290 AT5G19530.2 61.846 325 123 1 9 333 3 326 3.64e-156 441
Msa0794290 AT1G23820.2 35.586 222 135 6 50 268 108 324 8.65e-40 143
Msa0794290 AT1G23820.1 34.978 223 137 6 50 269 64 281 2.31e-38 139
Msa0794290 AT1G70310.1 34.222 225 140 6 48 269 66 285 3.77e-37 136
Msa0794290 AT5G53120.1 33.784 222 140 5 50 269 87 303 3.32e-27 110
Msa0794290 AT5G53120.4 33.784 222 140 5 50 269 87 303 3.32e-27 110
Msa0794290 AT5G53120.2 33.784 222 140 5 50 269 87 303 3.32e-27 110
Msa0794290 AT5G53120.5 33.784 222 140 5 50 269 87 303 3.32e-27 110
Msa0794290 AT5G53120.3 33.784 222 140 5 50 269 87 303 3.32e-27 110
Msa0794290 AT5G53120.7 33.784 222 140 5 50 269 104 320 3.60e-27 110
Msa0794290 AT5G53120.6 30.120 249 140 7 50 269 87 330 2.04e-23 100

Find 111 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCATCTTATGCTGATATT+TGG 0.118417 5_3:+6167260 Msa0794290:CDS
TCCTATCTTGTGCTTCTATT+TGG 0.160025 5_3:+6167890 Msa0794290:three_prime_UTR
CCCATCTTATGCTGATATTT+GGG 0.239153 5_3:+6167261 Msa0794290:CDS
GGTATTAGCAATGGCATTAA+TGG 0.267235 5_3:+6165370 Msa0794290:CDS
ATTCCACCTTTCTTCAGTTT+TGG 0.286598 5_3:-6166904 None:intergenic
ACCTATGATAACAAAAGTTT+AGG 0.330445 5_3:-6168051 None:intergenic
AGTAGTTTGTTGTGATGTTA+TGG 0.332004 5_3:-6165250 None:intergenic
TAGCAAGGACCTCCTTCTAT+TGG 0.333191 5_3:-6166841 None:intergenic
ATATTATACCCTCCCTAGTT+AGG 0.348801 5_3:-6165042 None:intergenic
TTTAATATCGGTCAAATACT+TGG 0.356177 5_3:-6168014 None:intergenic
CCTATGATAACAAAAGTTTA+GGG 0.357870 5_3:-6168050 None:intergenic
CTTATGCAGGCAGGGCCTGC+TGG 0.371312 5_3:+6167041 Msa0794290:intron
ATTCACCACCTAATGGTTAT+AGG 0.379554 5_3:+6165410 Msa0794290:CDS
TGAGAGCAAAGCACCATCTA+AGG 0.385224 5_3:-6165468 None:intergenic
GGGAAGTAATTATTGATAGC+TGG 0.386890 5_3:-6165176 None:intergenic
GTACCAAGACATTGCATTGT+TGG 0.386982 5_3:+6166092 Msa0794290:CDS
TTGCAGGCATTAGTACTTGA+TGG 0.389576 5_3:+6166232 Msa0794290:intron
TGATGTAATAGTTGGTGATT+TGG 0.391967 5_3:+6166813 Msa0794290:CDS
GATGGGATATGAGCTGAATA+AGG 0.405736 5_3:-6167244 None:intergenic
GATGGTGCTTTGCTCTCAAT+AGG 0.407800 5_3:+6165473 Msa0794290:CDS
TAGGTAGCCAATGTTTGGTT+TGG 0.410891 5_3:+6168069 Msa0794290:three_prime_UTR
TGATGTTGCGAGTTTAATAT+CGG 0.418972 5_3:-6168026 None:intergenic
ACACTTGAAAACTTGTCTTA+AGG 0.423360 5_3:-6167105 None:intergenic
ATATATTAGAGTAGTAGTAT+AGG 0.425521 5_3:-6167925 None:intergenic
AAGCAAAATAAAATCCTCAT+TGG 0.425731 5_3:-6165116 None:intergenic
AGTGAGCTCATAAAAGTCTT+TGG 0.426867 5_3:-6166875 None:intergenic
GAAGAGAATAGATATCTTGA+TGG 0.427990 5_3:+6167459 Msa0794290:CDS
TCCAAATAGAAGCACAAGAT+AGG 0.430681 5_3:-6167891 None:intergenic
GGAGCAGCTAGGTTCATATA+TGG 0.430922 5_3:+6167653 Msa0794290:CDS
CAGCTCTTCCTATAACCATT+AGG 0.431490 5_3:-6165418 None:intergenic
GGAAGTAATTATTGATAGCT+GGG 0.434182 5_3:-6165175 None:intergenic
GATAAGATACGGTCCTAACT+AGG 0.447008 5_3:+6165029 Msa0794290:five_prime_UTR
TATAAGAAGGAGAAATGAAA+GGG 0.454430 5_3:-6165196 None:intergenic
TATCATAGGTAGCCAATGTT+TGG 0.456758 5_3:+6168064 Msa0794290:three_prime_UTR
GTAGCTTACACAAATGGAAA+TGG 0.460506 5_3:+6165349 Msa0794290:CDS
GAGAGGTATGATGTAATAGT+TGG 0.464597 5_3:+6166805 Msa0794290:CDS
CCCCAAATATCAGCATAAGA+TGG 0.466906 5_3:-6167262 None:intergenic
TGATATTTGGGGATGGGTCC+TGG 0.469083 5_3:+6167273 Msa0794290:CDS
TATAACCATTAGGTGGTGAA+TGG 0.470001 5_3:-6165408 None:intergenic
ATGAGAGATCGTATATAAGA+AGG 0.473033 5_3:-6165209 None:intergenic
GGTGAAGTAGCTTACACAAA+TGG 0.475512 5_3:+6165343 Msa0794290:CDS
CGACTTCAAGTCTCGAATCA+TGG 0.476256 5_3:-6166652 None:intergenic
GCTTGTAAGTGTTGTATCAA+TGG 0.478023 5_3:+6167855 Msa0794290:three_prime_UTR
TTATGCTGATATTTGGGGAT+GGG 0.480221 5_3:+6167267 Msa0794290:CDS
AAAAGCCATTCACCACCTAA+TGG 0.481909 5_3:+6165403 Msa0794290:CDS
GGCTGCAGCATCTTGCATAC+AGG 0.485641 5_3:+6166060 Msa0794290:intron
CTGGATGAACAAGACATTCA+TGG 0.492460 5_3:-6166291 None:intergenic
GATTTGGCTGATCCAATAGA+AGG 0.493154 5_3:+6166829 Msa0794290:CDS
TTTATTATGGGAGGAGGAGA+AGG 0.494945 5_3:+6166433 Msa0794290:CDS
TTGTTGGACACAAAGCCCTT+TGG 0.495311 5_3:+6166108 Msa0794290:CDS
CTTATGCTGATATTTGGGGA+TGG 0.502652 5_3:+6167266 Msa0794290:CDS
AGATTGAAGAGAACCTTAGA+TGG 0.508186 5_3:+6165455 Msa0794290:CDS
TGTTACAGAGCTGAACTAGA+AGG 0.509621 5_3:+6166775 Msa0794290:intron
TTCTTCTTAGTTGTGATCAA+AGG 0.514924 5_3:+6165310 Msa0794290:five_prime_UTR
AGTAAAGGATATACATAGGA+TGG 0.521052 5_3:-6166324 None:intergenic
ACAATGCAATGTCTTGGTAC+TGG 0.522446 5_3:-6166089 None:intergenic
CCCAAATATCAGCATAAGAT+GGG 0.522916 5_3:-6167261 None:intergenic
ATAGGATGGTGAAGAAGAGC+TGG 0.523873 5_3:-6166310 None:intergenic
TATCTAATTCTTCAGCACTA+AGG 0.525656 5_3:-6167413 None:intergenic
TGCAGGCATTAGTACTTGAT+GGG 0.528350 5_3:+6166233 Msa0794290:intron
CTCAAGCCAAAACTGAAGAA+AGG 0.529230 5_3:+6166898 Msa0794290:CDS
TTGTCAAATGCGAGTAAAAG+TGG 0.533325 5_3:-6168099 None:intergenic
TATATAAGAACCTTGCCAAA+GGG 0.534318 5_3:-6166123 None:intergenic
AAAGAAAGTGAAGAGCAGAA+AGG 0.542919 5_3:-6167793 None:intergenic
CTACTGCAAGGGAACTGCTC+AGG 0.545339 5_3:+6166458 Msa0794290:CDS
AATGGAAATGGTATTAGCAA+TGG 0.547033 5_3:+6165361 Msa0794290:CDS
ACAGGCTTCAGATTCTCCAT+TGG 0.548267 5_3:+6167389 Msa0794290:intron
GTTTGTTGTGATGTTATGGA+TGG 0.550634 5_3:-6165246 None:intergenic
TTAATATCGGTCAAATACTT+GGG 0.554417 5_3:-6168013 None:intergenic
GTGTGGCTGAATATTCCAGC+AGG 0.556371 5_3:-6167056 None:intergenic
CCATCTTATGCTGATATTTG+GGG 0.559813 5_3:+6167262 Msa0794290:CDS
TAAGAAATGAAGATAAGATA+CGG 0.567425 5_3:+6165018 None:intergenic
AAGCACAAGATAGGAACCAT+TGG 0.568399 5_3:-6167882 None:intergenic
ATATAAGAAGGAGAAATGAA+AGG 0.569546 5_3:-6165197 None:intergenic
GGACACAAAGCCCTTTGGCA+AGG 0.572609 5_3:+6166113 Msa0794290:CDS
TAGATATTAGAATGAGACAG+AGG 0.574128 5_3:+6167430 Msa0794290:CDS
TTATATAAGAACCTTGCCAA+AGG 0.576445 5_3:-6166124 None:intergenic
TCTTCAGCACTAAGGTCCAA+TGG 0.578062 5_3:-6167405 None:intergenic
TTGGTGTAAAGTTTATAGCA+AGG 0.578661 5_3:-6166856 None:intergenic
GCTAGGTTCATATATGGTCA+TGG 0.584533 5_3:+6167659 Msa0794290:CDS
ATAAGATACGGTCCTAACTA+GGG 0.584903 5_3:+6165030 Msa0794290:five_prime_UTR
AGGTGGAATATTTGTGACAC+AGG 0.588611 5_3:+6166918 Msa0794290:CDS
TTGTATCAATGGACAACCAA+TGG 0.592903 5_3:+6167866 Msa0794290:three_prime_UTR
AGTGGTGAAAGTACAAGCCA+AGG 0.593535 5_3:-6167823 None:intergenic
AATACATTACACACTGCGTG+CGG 0.594705 5_3:-6165079 None:intergenic
ATACATTACACACTGCGTGC+GGG 0.595018 5_3:-6165078 None:intergenic
TGTCCAACAATGCAATGTCT+TGG 0.599107 5_3:-6166095 None:intergenic
AACTAGAAGGCAAAGAAGAG+AGG 0.603737 5_3:+6166788 Msa0794290:CDS
AGCTGGGAAATCTAGCAAAG+TGG 0.604706 5_3:-6165159 None:intergenic
GAGGAGAAGGATCTACTGCA+AGG 0.605519 5_3:+6166446 Msa0794290:CDS
GTGGTGAAAGTACAAGCCAA+GGG 0.607505 5_3:-6167822 None:intergenic
CAAATGCGAGTAAAAGTGGT+TGG 0.611473 5_3:-6168095 None:intergenic
ATCATACTTAGTTGTAAACA+AGG 0.614887 5_3:+6166622 Msa0794290:CDS
ATTAGCAATGGCATTAATGG+AGG 0.617370 5_3:+6165373 Msa0794290:CDS
AAGCCAAAACTGAAGAAAGG+TGG 0.618874 5_3:+6166901 Msa0794290:CDS
ATGGTTATAGGAAGAGCTGT+TGG 0.622549 5_3:+6165422 Msa0794290:CDS
AGGAGAAGGATCTACTGCAA+GGG 0.631605 5_3:+6166447 Msa0794290:CDS
GATACGGTCCTAACTAGGGA+GGG 0.633478 5_3:+6165034 Msa0794290:five_prime_UTR
GTACTTTACGAAAACCAATG+AGG 0.636929 5_3:+6165102 Msa0794290:five_prime_UTR
CACACAATGCAAGTTAACAA+AGG 0.637771 5_3:+6167734 Msa0794290:three_prime_UTR
AGATACGGTCCTAACTAGGG+AGG 0.644379 5_3:+6165033 Msa0794290:five_prime_UTR
GAGACTCATGTATACACAGA+GGG 0.651343 5_3:+6167632 Msa0794290:CDS
TTGGTCGCCAAACCAAACAT+TGG 0.652868 5_3:-6168076 None:intergenic
TATACACAGAGGGAGCAGCT+AGG 0.656967 5_3:+6167642 Msa0794290:CDS
AAGTCGTCATCAACGACGCG+AGG 0.657834 5_3:+6166669 Msa0794290:CDS
CTCTTCCTATAACCATTAGG+TGG 0.661521 5_3:-6165415 None:intergenic
TTGGCTGATCCAATAGAAGG+AGG 0.689346 5_3:+6166832 Msa0794290:CDS
TGTAATGTGTGACATTGATG+AGG 0.706772 5_3:+6166501 Msa0794290:CDS
TACATGAGAAAACTTCTGTG+TGG 0.723090 5_3:-6167073 None:intergenic
TGGTGAAAGTACAAGCCAAG+GGG 0.731603 5_3:-6167821 None:intergenic
TGAGACTCATGTATACACAG+AGG 0.767768 5_3:+6167631 Msa0794290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATGTAAACTATAATA+TGG - chr5_3:6165603-6165622 None:intergenic 10.0%
!!! ATTTAATTTAAGAAAAAATG+TGG + chr5_3:6167946-6167965 Msa0794290:three_prime_UTR 10.0%
!!! ACTTTTTATTCTATTTGTTT+TGG + chr5_3:6166034-6166053 Msa0794290:intron 15.0%
!!! AATACTTTTCTTATAAGTAA+AGG - chr5_3:6166163-6166182 None:intergenic 15.0%
!!! CCAAAAAATGTTTTTATTAT+GGG + chr5_3:6166421-6166440 Msa0794290:CDS 15.0%
!! ATTAATTTATTGATGTTTGA+TGG + chr5_3:6166573-6166592 Msa0794290:intron 15.0%
!! ATGTATTAAAAAACTTGATA+AGG + chr5_3:6166976-6166995 Msa0794290:intron 15.0%
!! CAATAATATATAAATTTACC+AGG - chr5_3:6167294-6167313 None:intergenic 15.0%
!!! TGATTTTGTTTTGTTTATTA+TGG + chr5_3:6167973-6167992 Msa0794290:three_prime_UTR 15.0%
!!! ACAAAAAATGGACAAAATTT+TGG - chr5_3:6165831-6165850 None:intergenic 20.0%
!! CTAGCTAAAAAAACAAAAAA+TGG - chr5_3:6165843-6165862 None:intergenic 20.0%
!!! TTTTATTCTATTTGTTTTGG+TGG + chr5_3:6166037-6166056 Msa0794290:intron 20.0%
!!! TTTATTCTATTTGTTTTGGT+GGG + chr5_3:6166038-6166057 Msa0794290:intron 20.0%
!! TAACATAGTAGATAATTAAG+TGG - chr5_3:6166205-6166224 None:intergenic 20.0%
!!! TATTTTTCATTCCATTTTCA+AGG + chr5_3:6166398-6166417 Msa0794290:intron 20.0%
!!! GCCAAAAAATGTTTTTATTA+TGG + chr5_3:6166420-6166439 Msa0794290:CDS 20.0%
!!! CCCATAATAAAAACATTTTT+TGG - chr5_3:6166424-6166443 None:intergenic 20.0%
!!! AAAAATGTTTTTATTATGGG+AGG + chr5_3:6166424-6166443 Msa0794290:CDS 20.0%
!!! TTTTTGTTTACAATTTCAAG+TGG + chr5_3:6166545-6166564 Msa0794290:intron 20.0%
!! AAACATAGAATACTTAGATT+TGG - chr5_3:6167353-6167372 None:intergenic 20.0%
!! ATATATTAGAGTAGTAGTAT+AGG - chr5_3:6167928-6167947 None:intergenic 20.0%
! AAGCAAAATAAAATCCTCAT+TGG - chr5_3:6165119-6165138 None:intergenic 25.0%
! TATAAGAAGGAGAAATGAAA+GGG - chr5_3:6165199-6165218 None:intergenic 25.0%
! ATATAAGAAGGAGAAATGAA+AGG - chr5_3:6165200-6165219 None:intergenic 25.0%
! CTACTATCTTCCTTTATATA+TGG + chr5_3:6165649-6165668 Msa0794290:intron 25.0%
!!! TTCATGTTGTTTCTTTTAGA+AGG + chr5_3:6165696-6165715 Msa0794290:intron 25.0%
!! ATACTCTTTTTGCCTTTATT+TGG + chr5_3:6165894-6165913 Msa0794290:intron 25.0%
!!! TTATTCTATTTGTTTTGGTG+GGG + chr5_3:6166039-6166058 Msa0794290:intron 25.0%
! ATCATACTTAGTTGTAAACA+AGG + chr5_3:6166622-6166641 Msa0794290:CDS 25.0%
!! TGTTGTTATTATTCTTATGC+AGG + chr5_3:6167028-6167047 Msa0794290:intron 25.0%
!!! TTTTGTTTTGATTTGAAGCT+TGG - chr5_3:6167698-6167717 None:intergenic 25.0%
! TTAATATCGGTCAAATACTT+GGG - chr5_3:6168016-6168035 None:intergenic 25.0%
! TTTAATATCGGTCAAATACT+TGG - chr5_3:6168017-6168036 None:intergenic 25.0%
! CCTATGATAACAAAAGTTTA+GGG - chr5_3:6168053-6168072 None:intergenic 25.0%
! ACCTATGATAACAAAAGTTT+AGG - chr5_3:6168054-6168073 None:intergenic 25.0%
! GGAAGTAATTATTGATAGCT+GGG - chr5_3:6165178-6165197 None:intergenic 30.0%
ATGAGAGATCGTATATAAGA+AGG - chr5_3:6165212-6165231 None:intergenic 30.0%
!! AGTAGTTTGTTGTGATGTTA+TGG - chr5_3:6165253-6165272 None:intergenic 30.0%
TTCTTCTTAGTTGTGATCAA+AGG + chr5_3:6165310-6165329 Msa0794290:five_prime_UTR 30.0%
TGTGATCAAAGGAAAAAAGA+TGG + chr5_3:6165321-6165340 Msa0794290:exon 30.0%
GTGATCAAAGGAAAAAAGAT+GGG + chr5_3:6165322-6165341 Msa0794290:exon 30.0%
AATGGAAATGGTATTAGCAA+TGG + chr5_3:6165361-6165380 Msa0794290:CDS 30.0%
CTATCTTCCTTTATATATGG+CGG + chr5_3:6165652-6165671 Msa0794290:intron 30.0%
TGAAAAGATAATAGAAGCCA+AGG + chr5_3:6165723-6165742 Msa0794290:intron 30.0%
!! CCTTTTTCATAGCCAAATAA+AGG - chr5_3:6165909-6165928 None:intergenic 30.0%
! CCTTTATTTGGCTATGAAAA+AGG + chr5_3:6165906-6165925 Msa0794290:intron 30.0%
TATATAAGAACCTTGCCAAA+GGG - chr5_3:6166126-6166145 None:intergenic 30.0%
TTATATAAGAACCTTGCCAA+AGG - chr5_3:6166127-6166146 None:intergenic 30.0%
! ACTATGTTACATACTTTTGC+AGG + chr5_3:6166216-6166235 Msa0794290:intron 30.0%
AGTAAAGGATATACATAGGA+TGG - chr5_3:6166327-6166346 None:intergenic 30.0%
GAAGAGTAAAGGATATACAT+AGG - chr5_3:6166331-6166350 None:intergenic 30.0%
CAATCATTGAAGAAGAGTAA+AGG - chr5_3:6166342-6166361 None:intergenic 30.0%
ATGAAAAAATGTTCAAGTGC+TGG - chr5_3:6166374-6166393 None:intergenic 30.0%
!!! ACATTTTTTGGCCTTGAAAA+TGG - chr5_3:6166412-6166431 None:intergenic 30.0%
!! AATGTTTTTATTATGGGAGG+AGG + chr5_3:6166427-6166446 Msa0794290:CDS 30.0%
GATTAATATGATATTACGCG+AGG + chr5_3:6166704-6166723 Msa0794290:intron 30.0%
!! TGATGTAATAGTTGGTGATT+TGG + chr5_3:6166813-6166832 Msa0794290:CDS 30.0%
TTGGTGTAAAGTTTATAGCA+AGG - chr5_3:6166859-6166878 None:intergenic 30.0%
TTATTATTCTTATGCAGGCA+GGG + chr5_3:6167033-6167052 Msa0794290:intron 30.0%
ACACTTGAAAACTTGTCTTA+AGG - chr5_3:6167108-6167127 None:intergenic 30.0%
!!! GTATTCTATGTTTTTTCCCT+TGG + chr5_3:6167360-6167379 Msa0794290:intron 30.0%
TATCTAATTCTTCAGCACTA+AGG - chr5_3:6167416-6167435 None:intergenic 30.0%
TAGATATTAGAATGAGACAG+AGG + chr5_3:6167430-6167449 Msa0794290:CDS 30.0%
GAAGAGAATAGATATCTTGA+TGG + chr5_3:6167459-6167478 Msa0794290:CDS 30.0%
CATTGAATGATACTATTGAC+AGG + chr5_3:6167600-6167619 Msa0794290:intron 30.0%
TACTTTCACCACTCAAAAAA+AGG + chr5_3:6167833-6167852 Msa0794290:three_prime_UTR 30.0%
TGATGTTGCGAGTTTAATAT+CGG - chr5_3:6168029-6168048 None:intergenic 30.0%
!! CCCTAAACTTTTGTTATCAT+AGG + chr5_3:6168050-6168069 Msa0794290:three_prime_UTR 30.0%
ATAAGATACGGTCCTAACTA+GGG + chr5_3:6165030-6165049 Msa0794290:five_prime_UTR 35.0%
ATATTATACCCTCCCTAGTT+AGG - chr5_3:6165045-6165064 None:intergenic 35.0%
GTACTTTACGAAAACCAATG+AGG + chr5_3:6165102-6165121 Msa0794290:five_prime_UTR 35.0%
! GGGAAGTAATTATTGATAGC+TGG - chr5_3:6165179-6165198 None:intergenic 35.0%
!! GTTTGTTGTGATGTTATGGA+TGG - chr5_3:6165249-6165268 None:intergenic 35.0%
GTAGCTTACACAAATGGAAA+TGG + chr5_3:6165349-6165368 Msa0794290:CDS 35.0%
GGTATTAGCAATGGCATTAA+TGG + chr5_3:6165370-6165389 Msa0794290:CDS 35.0%
ATTAGCAATGGCATTAATGG+AGG + chr5_3:6165373-6165392 Msa0794290:CDS 35.0%
TATAACCATTAGGTGGTGAA+TGG - chr5_3:6165411-6165430 None:intergenic 35.0%
ATTCACCACCTAATGGTTAT+AGG + chr5_3:6165410-6165429 Msa0794290:CDS 35.0%
AGATTGAAGAGAACCTTAGA+TGG + chr5_3:6165455-6165474 Msa0794290:CDS 35.0%
!!! GTGTGTAGCTTTTTCATTCT+TGG - chr5_3:6165567-6165586 None:intergenic 35.0%
TGTAATGTGTGACATTGATG+AGG + chr5_3:6166501-6166520 Msa0794290:CDS 35.0%
TATTGATGTTTGATGGAAGC+AGG + chr5_3:6166580-6166599 Msa0794290:intron 35.0%
TTCAGCTCTGTAACAATCAA+AGG - chr5_3:6166770-6166789 None:intergenic 35.0%
! GAGAGGTATGATGTAATAGT+TGG + chr5_3:6166805-6166824 Msa0794290:CDS 35.0%
AGTGAGCTCATAAAAGTCTT+TGG - chr5_3:6166878-6166897 None:intergenic 35.0%
! ATTCCACCTTTCTTCAGTTT+TGG - chr5_3:6166907-6166926 None:intergenic 35.0%
GTTATTATTCTTATGCAGGC+AGG + chr5_3:6167032-6167051 Msa0794290:intron 35.0%
TACATGAGAAAACTTCTGTG+TGG - chr5_3:6167076-6167095 None:intergenic 35.0%
TCTGCAAACATGAAGAAAGT+AGG - chr5_3:6167217-6167236 None:intergenic 35.0%
TTTCTTCATGTTTGCAGATG+TGG + chr5_3:6167219-6167238 Msa0794290:intron 35.0%
TCCCATCTTATGCTGATATT+TGG + chr5_3:6167260-6167279 Msa0794290:CDS 35.0%
CCCAAATATCAGCATAAGAT+GGG - chr5_3:6167264-6167283 None:intergenic 35.0%
CCCATCTTATGCTGATATTT+GGG + chr5_3:6167261-6167280 Msa0794290:CDS 35.0%
CCATCTTATGCTGATATTTG+GGG + chr5_3:6167262-6167281 Msa0794290:CDS 35.0%
TTATGCTGATATTTGGGGAT+GGG + chr5_3:6167267-6167286 Msa0794290:CDS 35.0%
CACACAATGCAAGTTAACAA+AGG + chr5_3:6167734-6167753 Msa0794290:three_prime_UTR 35.0%
AAAGAAAGTGAAGAGCAGAA+AGG - chr5_3:6167796-6167815 None:intergenic 35.0%
!!! CACTTTCTTTTTTTACCCCT+TGG + chr5_3:6167806-6167825 Msa0794290:three_prime_UTR 35.0%
!!! CTTACAAGCCTTTTTTTGAG+TGG - chr5_3:6167844-6167863 None:intergenic 35.0%
! GCTTGTAAGTGTTGTATCAA+TGG + chr5_3:6167855-6167874 Msa0794290:three_prime_UTR 35.0%
TTGTATCAATGGACAACCAA+TGG + chr5_3:6167866-6167885 Msa0794290:three_prime_UTR 35.0%
TCCTATCTTGTGCTTCTATT+TGG + chr5_3:6167890-6167909 Msa0794290:three_prime_UTR 35.0%
! TCCAAATAGAAGCACAAGAT+AGG - chr5_3:6167894-6167913 None:intergenic 35.0%
TATCATAGGTAGCCAATGTT+TGG + chr5_3:6168064-6168083 Msa0794290:three_prime_UTR 35.0%
GATAAGATACGGTCCTAACT+AGG + chr5_3:6165029-6165048 Msa0794290:five_prime_UTR 40.0%
AATACATTACACACTGCGTG+CGG - chr5_3:6165082-6165101 None:intergenic 40.0%
GGTGAAGTAGCTTACACAAA+TGG + chr5_3:6165343-6165362 Msa0794290:CDS 40.0%
AAAAGCCATTCACCACCTAA+TGG + chr5_3:6165403-6165422 Msa0794290:CDS 40.0%
CTCTTCCTATAACCATTAGG+TGG - chr5_3:6165418-6165437 None:intergenic 40.0%
CAGCTCTTCCTATAACCATT+AGG - chr5_3:6165421-6165440 None:intergenic 40.0%
ATGGTTATAGGAAGAGCTGT+TGG + chr5_3:6165422-6165441 Msa0794290:CDS 40.0%
CAAAGAGCCGCCATATATAA+AGG - chr5_3:6165662-6165681 None:intergenic 40.0%
CTTTATATATGGCGGCTCTT+TGG + chr5_3:6165660-6165679 Msa0794290:intron 40.0%
ATAGAAGCCAAGGAACAAGA+AGG + chr5_3:6165733-6165752 Msa0794290:intron 40.0%
!! AAAAGCACCTTCTTGTTCCT+TGG - chr5_3:6165743-6165762 None:intergenic 40.0%
!!! ACAAGAAGGTGCTTTTCCAT+TGG + chr5_3:6165747-6165766 Msa0794290:intron 40.0%
!!! CAAGAAGGTGCTTTTCCATT+GGG + chr5_3:6165748-6165767 Msa0794290:intron 40.0%
TTTGTCTCACTCAAACCCAA+TGG - chr5_3:6165766-6165785 None:intergenic 40.0%
ACAATGCAATGTCTTGGTAC+TGG - chr5_3:6166092-6166111 None:intergenic 40.0%
GTACCAAGACATTGCATTGT+TGG + chr5_3:6166092-6166111 Msa0794290:CDS 40.0%
TGTCCAACAATGCAATGTCT+TGG - chr5_3:6166098-6166117 None:intergenic 40.0%
TTGCAGGCATTAGTACTTGA+TGG + chr5_3:6166232-6166251 Msa0794290:intron 40.0%
TGCAGGCATTAGTACTTGAT+GGG + chr5_3:6166233-6166252 Msa0794290:intron 40.0%
CTGGATGAACAAGACATTCA+TGG - chr5_3:6166294-6166313 None:intergenic 40.0%
TTTATTATGGGAGGAGGAGA+AGG + chr5_3:6166433-6166452 Msa0794290:CDS 40.0%
TGTTACAGAGCTGAACTAGA+AGG + chr5_3:6166775-6166794 Msa0794290:intron 40.0%
AACTAGAAGGCAAAGAAGAG+AGG + chr5_3:6166788-6166807 Msa0794290:CDS 40.0%
GATTTGGCTGATCCAATAGA+AGG + chr5_3:6166829-6166848 Msa0794290:CDS 40.0%
CTCAAGCCAAAACTGAAGAA+AGG + chr5_3:6166898-6166917 Msa0794290:CDS 40.0%
AAGCCAAAACTGAAGAAAGG+TGG + chr5_3:6166901-6166920 Msa0794290:CDS 40.0%
AGGTGGAATATTTGTGACAC+AGG + chr5_3:6166918-6166937 Msa0794290:CDS 40.0%
GGAATATTTGTGACACAGGT+AGG + chr5_3:6166922-6166941 Msa0794290:intron 40.0%
ATATTTGTGACACAGGTAGG+TGG + chr5_3:6166925-6166944 Msa0794290:intron 40.0%
GATGGGATATGAGCTGAATA+AGG - chr5_3:6167247-6167266 None:intergenic 40.0%
CCCCAAATATCAGCATAAGA+TGG - chr5_3:6167265-6167284 None:intergenic 40.0%
CTTATGCTGATATTTGGGGA+TGG + chr5_3:6167266-6167285 Msa0794290:CDS 40.0%
! TTTTTCCCTTGGCCTATAAC+AGG + chr5_3:6167371-6167390 Msa0794290:intron 40.0%
! GAGAATCTGAAGCCTGTTAT+AGG - chr5_3:6167386-6167405 None:intergenic 40.0%
GTTCGTAACTCGTAAGCAAA+TGG + chr5_3:6167519-6167538 Msa0794290:intron 40.0%
TGAGACTCATGTATACACAG+AGG + chr5_3:6167631-6167650 Msa0794290:CDS 40.0%
GAGACTCATGTATACACAGA+GGG + chr5_3:6167632-6167651 Msa0794290:CDS 40.0%
GCTAGGTTCATATATGGTCA+TGG + chr5_3:6167659-6167678 Msa0794290:CDS 40.0%
AAGCACAAGATAGGAACCAT+TGG - chr5_3:6167885-6167904 None:intergenic 40.0%
TAGGTAGCCAATGTTTGGTT+TGG + chr5_3:6168069-6168088 Msa0794290:three_prime_UTR 40.0%
ATACATTACACACTGCGTGC+GGG - chr5_3:6165081-6165100 None:intergenic 45.0%
AGCTGGGAAATCTAGCAAAG+TGG - chr5_3:6165162-6165181 None:intergenic 45.0%
! TGAGAGCAAAGCACCATCTA+AGG - chr5_3:6165471-6165490 None:intergenic 45.0%
GATGGTGCTTTGCTCTCAAT+AGG + chr5_3:6165473-6165492 Msa0794290:CDS 45.0%
TTGTTGGACACAAAGCCCTT+TGG + chr5_3:6166108-6166127 Msa0794290:CDS 45.0%
ATAGGATGGTGAAGAAGAGC+TGG - chr5_3:6166313-6166332 None:intergenic 45.0%
AGGAGAAGGATCTACTGCAA+GGG + chr5_3:6166447-6166466 Msa0794290:CDS 45.0%
TGATGTTTGATGGAAGCAGG+AGG + chr5_3:6166583-6166602 Msa0794290:intron 45.0%
CGACTTCAAGTCTCGAATCA+TGG - chr5_3:6166655-6166674 None:intergenic 45.0%
TTGGCTGATCCAATAGAAGG+AGG + chr5_3:6166832-6166851 Msa0794290:CDS 45.0%
TAGCAAGGACCTCCTTCTAT+TGG - chr5_3:6166844-6166863 None:intergenic 45.0%
TGAAGCCTGTTATAGGCCAA+GGG - chr5_3:6167379-6167398 None:intergenic 45.0%
ACAGGCTTCAGATTCTCCAT+TGG + chr5_3:6167389-6167408 Msa0794290:intron 45.0%
TCTTCAGCACTAAGGTCCAA+TGG - chr5_3:6167408-6167427 None:intergenic 45.0%
GGAGCAGCTAGGTTCATATA+TGG + chr5_3:6167653-6167672 Msa0794290:CDS 45.0%
! TGGTGAAAGTACAAGCCAAG+GGG - chr5_3:6167824-6167843 None:intergenic 45.0%
! GTGGTGAAAGTACAAGCCAA+GGG - chr5_3:6167825-6167844 None:intergenic 45.0%
! AGTGGTGAAAGTACAAGCCA+AGG - chr5_3:6167826-6167845 None:intergenic 45.0%
TTGGTCGCCAAACCAAACAT+TGG - chr5_3:6168079-6168098 None:intergenic 45.0%
AGATACGGTCCTAACTAGGG+AGG + chr5_3:6165033-6165052 Msa0794290:five_prime_UTR 50.0%
GATACGGTCCTAACTAGGGA+GGG + chr5_3:6165034-6165053 Msa0794290:five_prime_UTR 50.0%
GAGGAGAAGGATCTACTGCA+AGG + chr5_3:6166446-6166465 Msa0794290:CDS 50.0%
TGTTTGATGGAAGCAGGAGG+TGG + chr5_3:6166586-6166605 Msa0794290:intron 50.0%
TTTGTGACACAGGTAGGTGG+CGG + chr5_3:6166928-6166947 Msa0794290:intron 50.0%
GTGTGGCTGAATATTCCAGC+AGG - chr5_3:6167059-6167078 None:intergenic 50.0%
TGATATTTGGGGATGGGTCC+TGG + chr5_3:6167273-6167292 Msa0794290:CDS 50.0%
CTGAAGCCTGTTATAGGCCA+AGG - chr5_3:6167380-6167399 None:intergenic 50.0%
TATACACAGAGGGAGCAGCT+AGG + chr5_3:6167642-6167661 Msa0794290:CDS 50.0%
GGCTGCAGCATCTTGCATAC+AGG + chr5_3:6166060-6166079 Msa0794290:intron 55.0%
GGACACAAAGCCCTTTGGCA+AGG + chr5_3:6166113-6166132 Msa0794290:CDS 55.0%
CTACTGCAAGGGAACTGCTC+AGG + chr5_3:6166458-6166477 Msa0794290:CDS 55.0%
AAGTCGTCATCAACGACGCG+AGG + chr5_3:6166669-6166688 Msa0794290:CDS 55.0%
! GTGACACAGGTAGGTGGCGG+AGG + chr5_3:6166931-6166950 Msa0794290:intron 65.0%
!! ACACAGGTAGGTGGCGGAGG+AGG + chr5_3:6166934-6166953 Msa0794290:intron 65.0%
CTTATGCAGGCAGGGCCTGC+TGG + chr5_3:6167041-6167060 Msa0794290:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 6165024 6168108 6165024 ID=Msa0794290;Name=Msa0794290
chr5_3 mRNA 6165024 6168108 6165024 ID=Msa0794290-mRNA-1;Parent=Msa0794290;Name=Msa0794290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=316|1|1|1|1|1|10|414|336
chr5_3 exon 6165024 6165494 6165024 ID=Msa0794290-mRNA-1:exon:2459;Parent=Msa0794290-mRNA-1
chr5_3 exon 6166068 6166134 6166068 ID=Msa0794290-mRNA-1:exon:2460;Parent=Msa0794290-mRNA-1
chr5_3 exon 6166238 6166332 6166238 ID=Msa0794290-mRNA-1:exon:2461;Parent=Msa0794290-mRNA-1
chr5_3 exon 6166420 6166522 6166420 ID=Msa0794290-mRNA-1:exon:2462;Parent=Msa0794290-mRNA-1
chr5_3 exon 6166602 6166690 6166602 ID=Msa0794290-mRNA-1:exon:2463;Parent=Msa0794290-mRNA-1
chr5_3 exon 6166783 6166939 6166783 ID=Msa0794290-mRNA-1:exon:2464;Parent=Msa0794290-mRNA-1
chr5_3 exon 6167050 6167125 6167050 ID=Msa0794290-mRNA-1:exon:2465;Parent=Msa0794290-mRNA-1
chr5_3 exon 6167236 6167294 6167236 ID=Msa0794290-mRNA-1:exon:2466;Parent=Msa0794290-mRNA-1
chr5_3 exon 6167393 6167529 6167393 ID=Msa0794290-mRNA-1:exon:2467;Parent=Msa0794290-mRNA-1
chr5_3 exon 6167622 6168108 6167622 ID=Msa0794290-mRNA-1:exon:2468;Parent=Msa0794290-mRNA-1
chr5_3 five_prime_UTR 6165024 6165339 6165024 ID=Msa0794290-mRNA-1:five_prime_utr;Parent=Msa0794290-mRNA-1
chr5_3 CDS 6165340 6165494 6165340 ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1
chr5_3 CDS 6166068 6166134 6166068 ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1
chr5_3 CDS 6166238 6166332 6166238 ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1
chr5_3 CDS 6166420 6166522 6166420 ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1
chr5_3 CDS 6166602 6166690 6166602 ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1
chr5_3 CDS 6166783 6166939 6166783 ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1
chr5_3 CDS 6167050 6167125 6167050 ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1
chr5_3 CDS 6167236 6167294 6167236 ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1
chr5_3 CDS 6167393 6167529 6167393 ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1
chr5_3 CDS 6167622 6167694 6167622 ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1
chr5_3 three_prime_UTR 6167695 6168108 6167695 ID=Msa0794290-mRNA-1:three_prime_utr;Parent=Msa0794290-mRNA-1
Gene Sequence

>Msa0794290

ATGGGTGAAGTAGCTTACACAAATGGAAATGGTATTAGCAATGGCATTAATGGAGGAAATGACAAAAGCCATTCACCACCTAATGGTTATAGGAAGAGCTGTTGGTATGAAGAAGAGATTGAAGAGAACCTTAGATGGTGCTTTGCTCTCAATAGCATCTTGCATACAGGAGCTAGCCAGTACCAAGACATTGCATTGTTGGACACAAAGCCCTTTGGCAAGGCATTAGTACTTGATGGGAAGCTTCAGAGTGCAGAGACAGATGAATTTATCTACCATGAATGTCTTGTTCATCCAGCTCTTCTTCACCATCCTATGCCAAAAAATGTTTTTATTATGGGAGGAGGAGAAGGATCTACTGCAAGGGAACTGCTCAGGCACAAGACTATAGACAAAGTTGTAATGTGTGACATTGATGAGGAGGTGGTTGAGTTTTGCAAATCATACTTAGTTGTAAACAAGGAAGCGTTCCATGATTCGAGACTTGAAGTCGTCATCAACGACGCGAGAGCTGAACTAGAAGGCAAAGAAGAGAGGTATGATGTAATAGTTGGTGATTTGGCTGATCCAATAGAAGGAGGTCCTTGCTATAAACTTTACACCAAAGACTTTTATGAGCTCACTCTCAAGCCAAAACTGAAGAAAGGTGGAATATTTGTGACACAGGCAGGGCCTGCTGGAATATTCAGCCACACAGAAGTTTTCTCATGTATTTACAACACCTTAAGACAAGTTTTCAAGTATGTGGTGCCTTATTCAGCTCATATCCCATCTTATGCTGATATTTGGGGATGGGTCCTGGCTTCAGATTCTCCATTGGACCTTAGTGCTGAAGAATTAGATATTAGAATGAGACAGAGGATTGTTGAAGAGAATAGATATCTTGATGGAAAAACATTTGTGTCATCATCAACTTTGAGCAAAGTTGTTCGTAACTCGCTAAACAATGAGACTCATGTATACACAGAGGGAGCAGCTAGGTTCATATATGGTCATGGAAAGAATGCATAA

Protein sequence

>Msa0794290

MGEVAYTNGNGISNGINGGNDKSHSPPNGYRKSCWYEEEIEENLRWCFALNSILHTGASQYQDIALLDTKPFGKALVLDGKLQSAETDEFIYHECLVHPALLHHPMPKNVFIMGGGEGSTARELLRHKTIDKVVMCDIDEEVVEFCKSYLVVNKEAFHDSRLEVVINDARAELEGKEERYDVIVGDLADPIEGGPCYKLYTKDFYELTLKPKLKKGGIFVTQAGPAGIFSHTEVFSCIYNTLRQVFKYVVPYSAHIPSYADIWGWVLASDSPLDLSAEELDIRMRQRIVEENRYLDGKTFVSSSTLSKVVRNSLNNETHVYTEGAARFIYGHGKNA*