Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0794290 | 6BQ2_A | 96.429 | 336 | 4 | 1 | 1 | 336 | 4 | 331 | 0.0 | 673 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0794290 | sp|Q9S7X6|ACL5_ARATH | 61.377 | 334 | 127 | 2 | 1 | 333 | 1 | 333 | 1.60e-155 | 442 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0794290 | G7K2D1 | 96.429 | 336 | 4 | 1 | 1 | 336 | 1 | 328 | 0.0 | 673 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0711520 | Msa0794290 | 0.858967 | 5.724619e-63 | -8.615850e-47 |
Msa0715060 | Msa0794290 | 0.850954 | 1.215667e-60 | -8.615850e-47 |
Msa0794290 | Msa0831720 | 0.863644 | 2.149266e-64 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0794290 | MtrunA17_Chr5g0394371 | 96.429 | 336 | 4 | 1 | 1 | 336 | 1 | 328 | 0.0 | 673 |
Msa0794290 | MtrunA17_Chr1g0150851 | 66.445 | 301 | 101 | 0 | 33 | 333 | 42 | 342 | 7.16e-154 | 435 |
Msa0794290 | MtrunA17_Chr3g0136181 | 62.371 | 194 | 73 | 0 | 140 | 333 | 30 | 223 | 1.63e-89 | 267 |
Msa0794290 | MtrunA17_Chr8g0365071 | 33.824 | 272 | 162 | 10 | 8 | 269 | 25 | 288 | 1.52e-38 | 139 |
Msa0794290 | MtrunA17_Chr5g0413701 | 36.323 | 223 | 134 | 6 | 50 | 269 | 72 | 289 | 3.85e-37 | 136 |
Msa0794290 | MtrunA17_Chr3g0117881 | 31.132 | 212 | 139 | 6 | 50 | 259 | 61 | 267 | 1.65e-27 | 110 |
Msa0794290 | MtrunA17_Chr3g0126551 | 30.450 | 289 | 170 | 10 | 7 | 269 | 20 | 303 | 5.47e-27 | 108 |
Msa0794290 | MtrunA17_Chr1g0158851 | 31.858 | 226 | 145 | 6 | 54 | 275 | 95 | 315 | 1.07e-23 | 100 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0794290 | AT5G19530.1 | 61.377 | 334 | 127 | 2 | 1 | 333 | 1 | 333 | 1.63e-156 | 442 |
Msa0794290 | AT5G19530.2 | 61.846 | 325 | 123 | 1 | 9 | 333 | 3 | 326 | 3.64e-156 | 441 |
Msa0794290 | AT1G23820.2 | 35.586 | 222 | 135 | 6 | 50 | 268 | 108 | 324 | 8.65e-40 | 143 |
Msa0794290 | AT1G23820.1 | 34.978 | 223 | 137 | 6 | 50 | 269 | 64 | 281 | 2.31e-38 | 139 |
Msa0794290 | AT1G70310.1 | 34.222 | 225 | 140 | 6 | 48 | 269 | 66 | 285 | 3.77e-37 | 136 |
Msa0794290 | AT5G53120.1 | 33.784 | 222 | 140 | 5 | 50 | 269 | 87 | 303 | 3.32e-27 | 110 |
Msa0794290 | AT5G53120.4 | 33.784 | 222 | 140 | 5 | 50 | 269 | 87 | 303 | 3.32e-27 | 110 |
Msa0794290 | AT5G53120.2 | 33.784 | 222 | 140 | 5 | 50 | 269 | 87 | 303 | 3.32e-27 | 110 |
Msa0794290 | AT5G53120.5 | 33.784 | 222 | 140 | 5 | 50 | 269 | 87 | 303 | 3.32e-27 | 110 |
Msa0794290 | AT5G53120.3 | 33.784 | 222 | 140 | 5 | 50 | 269 | 87 | 303 | 3.32e-27 | 110 |
Msa0794290 | AT5G53120.7 | 33.784 | 222 | 140 | 5 | 50 | 269 | 104 | 320 | 3.60e-27 | 110 |
Msa0794290 | AT5G53120.6 | 30.120 | 249 | 140 | 7 | 50 | 269 | 87 | 330 | 2.04e-23 | 100 |
Find 111 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCATCTTATGCTGATATT+TGG | 0.118417 | 5_3:+6167260 | Msa0794290:CDS |
TCCTATCTTGTGCTTCTATT+TGG | 0.160025 | 5_3:+6167890 | Msa0794290:three_prime_UTR |
CCCATCTTATGCTGATATTT+GGG | 0.239153 | 5_3:+6167261 | Msa0794290:CDS |
GGTATTAGCAATGGCATTAA+TGG | 0.267235 | 5_3:+6165370 | Msa0794290:CDS |
ATTCCACCTTTCTTCAGTTT+TGG | 0.286598 | 5_3:-6166904 | None:intergenic |
ACCTATGATAACAAAAGTTT+AGG | 0.330445 | 5_3:-6168051 | None:intergenic |
AGTAGTTTGTTGTGATGTTA+TGG | 0.332004 | 5_3:-6165250 | None:intergenic |
TAGCAAGGACCTCCTTCTAT+TGG | 0.333191 | 5_3:-6166841 | None:intergenic |
ATATTATACCCTCCCTAGTT+AGG | 0.348801 | 5_3:-6165042 | None:intergenic |
TTTAATATCGGTCAAATACT+TGG | 0.356177 | 5_3:-6168014 | None:intergenic |
CCTATGATAACAAAAGTTTA+GGG | 0.357870 | 5_3:-6168050 | None:intergenic |
CTTATGCAGGCAGGGCCTGC+TGG | 0.371312 | 5_3:+6167041 | Msa0794290:intron |
ATTCACCACCTAATGGTTAT+AGG | 0.379554 | 5_3:+6165410 | Msa0794290:CDS |
TGAGAGCAAAGCACCATCTA+AGG | 0.385224 | 5_3:-6165468 | None:intergenic |
GGGAAGTAATTATTGATAGC+TGG | 0.386890 | 5_3:-6165176 | None:intergenic |
GTACCAAGACATTGCATTGT+TGG | 0.386982 | 5_3:+6166092 | Msa0794290:CDS |
TTGCAGGCATTAGTACTTGA+TGG | 0.389576 | 5_3:+6166232 | Msa0794290:intron |
TGATGTAATAGTTGGTGATT+TGG | 0.391967 | 5_3:+6166813 | Msa0794290:CDS |
GATGGGATATGAGCTGAATA+AGG | 0.405736 | 5_3:-6167244 | None:intergenic |
GATGGTGCTTTGCTCTCAAT+AGG | 0.407800 | 5_3:+6165473 | Msa0794290:CDS |
TAGGTAGCCAATGTTTGGTT+TGG | 0.410891 | 5_3:+6168069 | Msa0794290:three_prime_UTR |
TGATGTTGCGAGTTTAATAT+CGG | 0.418972 | 5_3:-6168026 | None:intergenic |
ACACTTGAAAACTTGTCTTA+AGG | 0.423360 | 5_3:-6167105 | None:intergenic |
ATATATTAGAGTAGTAGTAT+AGG | 0.425521 | 5_3:-6167925 | None:intergenic |
AAGCAAAATAAAATCCTCAT+TGG | 0.425731 | 5_3:-6165116 | None:intergenic |
AGTGAGCTCATAAAAGTCTT+TGG | 0.426867 | 5_3:-6166875 | None:intergenic |
GAAGAGAATAGATATCTTGA+TGG | 0.427990 | 5_3:+6167459 | Msa0794290:CDS |
TCCAAATAGAAGCACAAGAT+AGG | 0.430681 | 5_3:-6167891 | None:intergenic |
GGAGCAGCTAGGTTCATATA+TGG | 0.430922 | 5_3:+6167653 | Msa0794290:CDS |
CAGCTCTTCCTATAACCATT+AGG | 0.431490 | 5_3:-6165418 | None:intergenic |
GGAAGTAATTATTGATAGCT+GGG | 0.434182 | 5_3:-6165175 | None:intergenic |
GATAAGATACGGTCCTAACT+AGG | 0.447008 | 5_3:+6165029 | Msa0794290:five_prime_UTR |
TATAAGAAGGAGAAATGAAA+GGG | 0.454430 | 5_3:-6165196 | None:intergenic |
TATCATAGGTAGCCAATGTT+TGG | 0.456758 | 5_3:+6168064 | Msa0794290:three_prime_UTR |
GTAGCTTACACAAATGGAAA+TGG | 0.460506 | 5_3:+6165349 | Msa0794290:CDS |
GAGAGGTATGATGTAATAGT+TGG | 0.464597 | 5_3:+6166805 | Msa0794290:CDS |
CCCCAAATATCAGCATAAGA+TGG | 0.466906 | 5_3:-6167262 | None:intergenic |
TGATATTTGGGGATGGGTCC+TGG | 0.469083 | 5_3:+6167273 | Msa0794290:CDS |
TATAACCATTAGGTGGTGAA+TGG | 0.470001 | 5_3:-6165408 | None:intergenic |
ATGAGAGATCGTATATAAGA+AGG | 0.473033 | 5_3:-6165209 | None:intergenic |
GGTGAAGTAGCTTACACAAA+TGG | 0.475512 | 5_3:+6165343 | Msa0794290:CDS |
CGACTTCAAGTCTCGAATCA+TGG | 0.476256 | 5_3:-6166652 | None:intergenic |
GCTTGTAAGTGTTGTATCAA+TGG | 0.478023 | 5_3:+6167855 | Msa0794290:three_prime_UTR |
TTATGCTGATATTTGGGGAT+GGG | 0.480221 | 5_3:+6167267 | Msa0794290:CDS |
AAAAGCCATTCACCACCTAA+TGG | 0.481909 | 5_3:+6165403 | Msa0794290:CDS |
GGCTGCAGCATCTTGCATAC+AGG | 0.485641 | 5_3:+6166060 | Msa0794290:intron |
CTGGATGAACAAGACATTCA+TGG | 0.492460 | 5_3:-6166291 | None:intergenic |
GATTTGGCTGATCCAATAGA+AGG | 0.493154 | 5_3:+6166829 | Msa0794290:CDS |
TTTATTATGGGAGGAGGAGA+AGG | 0.494945 | 5_3:+6166433 | Msa0794290:CDS |
TTGTTGGACACAAAGCCCTT+TGG | 0.495311 | 5_3:+6166108 | Msa0794290:CDS |
CTTATGCTGATATTTGGGGA+TGG | 0.502652 | 5_3:+6167266 | Msa0794290:CDS |
AGATTGAAGAGAACCTTAGA+TGG | 0.508186 | 5_3:+6165455 | Msa0794290:CDS |
TGTTACAGAGCTGAACTAGA+AGG | 0.509621 | 5_3:+6166775 | Msa0794290:intron |
TTCTTCTTAGTTGTGATCAA+AGG | 0.514924 | 5_3:+6165310 | Msa0794290:five_prime_UTR |
AGTAAAGGATATACATAGGA+TGG | 0.521052 | 5_3:-6166324 | None:intergenic |
ACAATGCAATGTCTTGGTAC+TGG | 0.522446 | 5_3:-6166089 | None:intergenic |
CCCAAATATCAGCATAAGAT+GGG | 0.522916 | 5_3:-6167261 | None:intergenic |
ATAGGATGGTGAAGAAGAGC+TGG | 0.523873 | 5_3:-6166310 | None:intergenic |
TATCTAATTCTTCAGCACTA+AGG | 0.525656 | 5_3:-6167413 | None:intergenic |
TGCAGGCATTAGTACTTGAT+GGG | 0.528350 | 5_3:+6166233 | Msa0794290:intron |
CTCAAGCCAAAACTGAAGAA+AGG | 0.529230 | 5_3:+6166898 | Msa0794290:CDS |
TTGTCAAATGCGAGTAAAAG+TGG | 0.533325 | 5_3:-6168099 | None:intergenic |
TATATAAGAACCTTGCCAAA+GGG | 0.534318 | 5_3:-6166123 | None:intergenic |
AAAGAAAGTGAAGAGCAGAA+AGG | 0.542919 | 5_3:-6167793 | None:intergenic |
CTACTGCAAGGGAACTGCTC+AGG | 0.545339 | 5_3:+6166458 | Msa0794290:CDS |
AATGGAAATGGTATTAGCAA+TGG | 0.547033 | 5_3:+6165361 | Msa0794290:CDS |
ACAGGCTTCAGATTCTCCAT+TGG | 0.548267 | 5_3:+6167389 | Msa0794290:intron |
GTTTGTTGTGATGTTATGGA+TGG | 0.550634 | 5_3:-6165246 | None:intergenic |
TTAATATCGGTCAAATACTT+GGG | 0.554417 | 5_3:-6168013 | None:intergenic |
GTGTGGCTGAATATTCCAGC+AGG | 0.556371 | 5_3:-6167056 | None:intergenic |
CCATCTTATGCTGATATTTG+GGG | 0.559813 | 5_3:+6167262 | Msa0794290:CDS |
TAAGAAATGAAGATAAGATA+CGG | 0.567425 | 5_3:+6165018 | None:intergenic |
AAGCACAAGATAGGAACCAT+TGG | 0.568399 | 5_3:-6167882 | None:intergenic |
ATATAAGAAGGAGAAATGAA+AGG | 0.569546 | 5_3:-6165197 | None:intergenic |
GGACACAAAGCCCTTTGGCA+AGG | 0.572609 | 5_3:+6166113 | Msa0794290:CDS |
TAGATATTAGAATGAGACAG+AGG | 0.574128 | 5_3:+6167430 | Msa0794290:CDS |
TTATATAAGAACCTTGCCAA+AGG | 0.576445 | 5_3:-6166124 | None:intergenic |
TCTTCAGCACTAAGGTCCAA+TGG | 0.578062 | 5_3:-6167405 | None:intergenic |
TTGGTGTAAAGTTTATAGCA+AGG | 0.578661 | 5_3:-6166856 | None:intergenic |
GCTAGGTTCATATATGGTCA+TGG | 0.584533 | 5_3:+6167659 | Msa0794290:CDS |
ATAAGATACGGTCCTAACTA+GGG | 0.584903 | 5_3:+6165030 | Msa0794290:five_prime_UTR |
AGGTGGAATATTTGTGACAC+AGG | 0.588611 | 5_3:+6166918 | Msa0794290:CDS |
TTGTATCAATGGACAACCAA+TGG | 0.592903 | 5_3:+6167866 | Msa0794290:three_prime_UTR |
AGTGGTGAAAGTACAAGCCA+AGG | 0.593535 | 5_3:-6167823 | None:intergenic |
AATACATTACACACTGCGTG+CGG | 0.594705 | 5_3:-6165079 | None:intergenic |
ATACATTACACACTGCGTGC+GGG | 0.595018 | 5_3:-6165078 | None:intergenic |
TGTCCAACAATGCAATGTCT+TGG | 0.599107 | 5_3:-6166095 | None:intergenic |
AACTAGAAGGCAAAGAAGAG+AGG | 0.603737 | 5_3:+6166788 | Msa0794290:CDS |
AGCTGGGAAATCTAGCAAAG+TGG | 0.604706 | 5_3:-6165159 | None:intergenic |
GAGGAGAAGGATCTACTGCA+AGG | 0.605519 | 5_3:+6166446 | Msa0794290:CDS |
GTGGTGAAAGTACAAGCCAA+GGG | 0.607505 | 5_3:-6167822 | None:intergenic |
CAAATGCGAGTAAAAGTGGT+TGG | 0.611473 | 5_3:-6168095 | None:intergenic |
ATCATACTTAGTTGTAAACA+AGG | 0.614887 | 5_3:+6166622 | Msa0794290:CDS |
ATTAGCAATGGCATTAATGG+AGG | 0.617370 | 5_3:+6165373 | Msa0794290:CDS |
AAGCCAAAACTGAAGAAAGG+TGG | 0.618874 | 5_3:+6166901 | Msa0794290:CDS |
ATGGTTATAGGAAGAGCTGT+TGG | 0.622549 | 5_3:+6165422 | Msa0794290:CDS |
AGGAGAAGGATCTACTGCAA+GGG | 0.631605 | 5_3:+6166447 | Msa0794290:CDS |
GATACGGTCCTAACTAGGGA+GGG | 0.633478 | 5_3:+6165034 | Msa0794290:five_prime_UTR |
GTACTTTACGAAAACCAATG+AGG | 0.636929 | 5_3:+6165102 | Msa0794290:five_prime_UTR |
CACACAATGCAAGTTAACAA+AGG | 0.637771 | 5_3:+6167734 | Msa0794290:three_prime_UTR |
AGATACGGTCCTAACTAGGG+AGG | 0.644379 | 5_3:+6165033 | Msa0794290:five_prime_UTR |
GAGACTCATGTATACACAGA+GGG | 0.651343 | 5_3:+6167632 | Msa0794290:CDS |
TTGGTCGCCAAACCAAACAT+TGG | 0.652868 | 5_3:-6168076 | None:intergenic |
TATACACAGAGGGAGCAGCT+AGG | 0.656967 | 5_3:+6167642 | Msa0794290:CDS |
AAGTCGTCATCAACGACGCG+AGG | 0.657834 | 5_3:+6166669 | Msa0794290:CDS |
CTCTTCCTATAACCATTAGG+TGG | 0.661521 | 5_3:-6165415 | None:intergenic |
TTGGCTGATCCAATAGAAGG+AGG | 0.689346 | 5_3:+6166832 | Msa0794290:CDS |
TGTAATGTGTGACATTGATG+AGG | 0.706772 | 5_3:+6166501 | Msa0794290:CDS |
TACATGAGAAAACTTCTGTG+TGG | 0.723090 | 5_3:-6167073 | None:intergenic |
TGGTGAAAGTACAAGCCAAG+GGG | 0.731603 | 5_3:-6167821 | None:intergenic |
TGAGACTCATGTATACACAG+AGG | 0.767768 | 5_3:+6167631 | Msa0794290:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTTATGTAAACTATAATA+TGG | - | chr5_3:6165603-6165622 | None:intergenic | 10.0% |
!!! | ATTTAATTTAAGAAAAAATG+TGG | + | chr5_3:6167946-6167965 | Msa0794290:three_prime_UTR | 10.0% |
!!! | ACTTTTTATTCTATTTGTTT+TGG | + | chr5_3:6166034-6166053 | Msa0794290:intron | 15.0% |
!!! | AATACTTTTCTTATAAGTAA+AGG | - | chr5_3:6166163-6166182 | None:intergenic | 15.0% |
!!! | CCAAAAAATGTTTTTATTAT+GGG | + | chr5_3:6166421-6166440 | Msa0794290:CDS | 15.0% |
!! | ATTAATTTATTGATGTTTGA+TGG | + | chr5_3:6166573-6166592 | Msa0794290:intron | 15.0% |
!! | ATGTATTAAAAAACTTGATA+AGG | + | chr5_3:6166976-6166995 | Msa0794290:intron | 15.0% |
!! | CAATAATATATAAATTTACC+AGG | - | chr5_3:6167294-6167313 | None:intergenic | 15.0% |
!!! | TGATTTTGTTTTGTTTATTA+TGG | + | chr5_3:6167973-6167992 | Msa0794290:three_prime_UTR | 15.0% |
!!! | ACAAAAAATGGACAAAATTT+TGG | - | chr5_3:6165831-6165850 | None:intergenic | 20.0% |
!! | CTAGCTAAAAAAACAAAAAA+TGG | - | chr5_3:6165843-6165862 | None:intergenic | 20.0% |
!!! | TTTTATTCTATTTGTTTTGG+TGG | + | chr5_3:6166037-6166056 | Msa0794290:intron | 20.0% |
!!! | TTTATTCTATTTGTTTTGGT+GGG | + | chr5_3:6166038-6166057 | Msa0794290:intron | 20.0% |
!! | TAACATAGTAGATAATTAAG+TGG | - | chr5_3:6166205-6166224 | None:intergenic | 20.0% |
!!! | TATTTTTCATTCCATTTTCA+AGG | + | chr5_3:6166398-6166417 | Msa0794290:intron | 20.0% |
!!! | GCCAAAAAATGTTTTTATTA+TGG | + | chr5_3:6166420-6166439 | Msa0794290:CDS | 20.0% |
!!! | CCCATAATAAAAACATTTTT+TGG | - | chr5_3:6166424-6166443 | None:intergenic | 20.0% |
!!! | AAAAATGTTTTTATTATGGG+AGG | + | chr5_3:6166424-6166443 | Msa0794290:CDS | 20.0% |
!!! | TTTTTGTTTACAATTTCAAG+TGG | + | chr5_3:6166545-6166564 | Msa0794290:intron | 20.0% |
!! | AAACATAGAATACTTAGATT+TGG | - | chr5_3:6167353-6167372 | None:intergenic | 20.0% |
!! | ATATATTAGAGTAGTAGTAT+AGG | - | chr5_3:6167928-6167947 | None:intergenic | 20.0% |
! | AAGCAAAATAAAATCCTCAT+TGG | - | chr5_3:6165119-6165138 | None:intergenic | 25.0% |
! | TATAAGAAGGAGAAATGAAA+GGG | - | chr5_3:6165199-6165218 | None:intergenic | 25.0% |
! | ATATAAGAAGGAGAAATGAA+AGG | - | chr5_3:6165200-6165219 | None:intergenic | 25.0% |
! | CTACTATCTTCCTTTATATA+TGG | + | chr5_3:6165649-6165668 | Msa0794290:intron | 25.0% |
!!! | TTCATGTTGTTTCTTTTAGA+AGG | + | chr5_3:6165696-6165715 | Msa0794290:intron | 25.0% |
!! | ATACTCTTTTTGCCTTTATT+TGG | + | chr5_3:6165894-6165913 | Msa0794290:intron | 25.0% |
!!! | TTATTCTATTTGTTTTGGTG+GGG | + | chr5_3:6166039-6166058 | Msa0794290:intron | 25.0% |
! | ATCATACTTAGTTGTAAACA+AGG | + | chr5_3:6166622-6166641 | Msa0794290:CDS | 25.0% |
!! | TGTTGTTATTATTCTTATGC+AGG | + | chr5_3:6167028-6167047 | Msa0794290:intron | 25.0% |
!!! | TTTTGTTTTGATTTGAAGCT+TGG | - | chr5_3:6167698-6167717 | None:intergenic | 25.0% |
! | TTAATATCGGTCAAATACTT+GGG | - | chr5_3:6168016-6168035 | None:intergenic | 25.0% |
! | TTTAATATCGGTCAAATACT+TGG | - | chr5_3:6168017-6168036 | None:intergenic | 25.0% |
! | CCTATGATAACAAAAGTTTA+GGG | - | chr5_3:6168053-6168072 | None:intergenic | 25.0% |
! | ACCTATGATAACAAAAGTTT+AGG | - | chr5_3:6168054-6168073 | None:intergenic | 25.0% |
! | GGAAGTAATTATTGATAGCT+GGG | - | chr5_3:6165178-6165197 | None:intergenic | 30.0% |
ATGAGAGATCGTATATAAGA+AGG | - | chr5_3:6165212-6165231 | None:intergenic | 30.0% | |
!! | AGTAGTTTGTTGTGATGTTA+TGG | - | chr5_3:6165253-6165272 | None:intergenic | 30.0% |
TTCTTCTTAGTTGTGATCAA+AGG | + | chr5_3:6165310-6165329 | Msa0794290:five_prime_UTR | 30.0% | |
TGTGATCAAAGGAAAAAAGA+TGG | + | chr5_3:6165321-6165340 | Msa0794290:exon | 30.0% | |
GTGATCAAAGGAAAAAAGAT+GGG | + | chr5_3:6165322-6165341 | Msa0794290:exon | 30.0% | |
AATGGAAATGGTATTAGCAA+TGG | + | chr5_3:6165361-6165380 | Msa0794290:CDS | 30.0% | |
CTATCTTCCTTTATATATGG+CGG | + | chr5_3:6165652-6165671 | Msa0794290:intron | 30.0% | |
TGAAAAGATAATAGAAGCCA+AGG | + | chr5_3:6165723-6165742 | Msa0794290:intron | 30.0% | |
!! | CCTTTTTCATAGCCAAATAA+AGG | - | chr5_3:6165909-6165928 | None:intergenic | 30.0% |
! | CCTTTATTTGGCTATGAAAA+AGG | + | chr5_3:6165906-6165925 | Msa0794290:intron | 30.0% |
TATATAAGAACCTTGCCAAA+GGG | - | chr5_3:6166126-6166145 | None:intergenic | 30.0% | |
TTATATAAGAACCTTGCCAA+AGG | - | chr5_3:6166127-6166146 | None:intergenic | 30.0% | |
! | ACTATGTTACATACTTTTGC+AGG | + | chr5_3:6166216-6166235 | Msa0794290:intron | 30.0% |
AGTAAAGGATATACATAGGA+TGG | - | chr5_3:6166327-6166346 | None:intergenic | 30.0% | |
GAAGAGTAAAGGATATACAT+AGG | - | chr5_3:6166331-6166350 | None:intergenic | 30.0% | |
CAATCATTGAAGAAGAGTAA+AGG | - | chr5_3:6166342-6166361 | None:intergenic | 30.0% | |
ATGAAAAAATGTTCAAGTGC+TGG | - | chr5_3:6166374-6166393 | None:intergenic | 30.0% | |
!!! | ACATTTTTTGGCCTTGAAAA+TGG | - | chr5_3:6166412-6166431 | None:intergenic | 30.0% |
!! | AATGTTTTTATTATGGGAGG+AGG | + | chr5_3:6166427-6166446 | Msa0794290:CDS | 30.0% |
GATTAATATGATATTACGCG+AGG | + | chr5_3:6166704-6166723 | Msa0794290:intron | 30.0% | |
!! | TGATGTAATAGTTGGTGATT+TGG | + | chr5_3:6166813-6166832 | Msa0794290:CDS | 30.0% |
TTGGTGTAAAGTTTATAGCA+AGG | - | chr5_3:6166859-6166878 | None:intergenic | 30.0% | |
TTATTATTCTTATGCAGGCA+GGG | + | chr5_3:6167033-6167052 | Msa0794290:intron | 30.0% | |
ACACTTGAAAACTTGTCTTA+AGG | - | chr5_3:6167108-6167127 | None:intergenic | 30.0% | |
!!! | GTATTCTATGTTTTTTCCCT+TGG | + | chr5_3:6167360-6167379 | Msa0794290:intron | 30.0% |
TATCTAATTCTTCAGCACTA+AGG | - | chr5_3:6167416-6167435 | None:intergenic | 30.0% | |
TAGATATTAGAATGAGACAG+AGG | + | chr5_3:6167430-6167449 | Msa0794290:CDS | 30.0% | |
GAAGAGAATAGATATCTTGA+TGG | + | chr5_3:6167459-6167478 | Msa0794290:CDS | 30.0% | |
CATTGAATGATACTATTGAC+AGG | + | chr5_3:6167600-6167619 | Msa0794290:intron | 30.0% | |
TACTTTCACCACTCAAAAAA+AGG | + | chr5_3:6167833-6167852 | Msa0794290:three_prime_UTR | 30.0% | |
TGATGTTGCGAGTTTAATAT+CGG | - | chr5_3:6168029-6168048 | None:intergenic | 30.0% | |
!! | CCCTAAACTTTTGTTATCAT+AGG | + | chr5_3:6168050-6168069 | Msa0794290:three_prime_UTR | 30.0% |
ATAAGATACGGTCCTAACTA+GGG | + | chr5_3:6165030-6165049 | Msa0794290:five_prime_UTR | 35.0% | |
ATATTATACCCTCCCTAGTT+AGG | - | chr5_3:6165045-6165064 | None:intergenic | 35.0% | |
GTACTTTACGAAAACCAATG+AGG | + | chr5_3:6165102-6165121 | Msa0794290:five_prime_UTR | 35.0% | |
! | GGGAAGTAATTATTGATAGC+TGG | - | chr5_3:6165179-6165198 | None:intergenic | 35.0% |
!! | GTTTGTTGTGATGTTATGGA+TGG | - | chr5_3:6165249-6165268 | None:intergenic | 35.0% |
GTAGCTTACACAAATGGAAA+TGG | + | chr5_3:6165349-6165368 | Msa0794290:CDS | 35.0% | |
GGTATTAGCAATGGCATTAA+TGG | + | chr5_3:6165370-6165389 | Msa0794290:CDS | 35.0% | |
ATTAGCAATGGCATTAATGG+AGG | + | chr5_3:6165373-6165392 | Msa0794290:CDS | 35.0% | |
TATAACCATTAGGTGGTGAA+TGG | - | chr5_3:6165411-6165430 | None:intergenic | 35.0% | |
ATTCACCACCTAATGGTTAT+AGG | + | chr5_3:6165410-6165429 | Msa0794290:CDS | 35.0% | |
AGATTGAAGAGAACCTTAGA+TGG | + | chr5_3:6165455-6165474 | Msa0794290:CDS | 35.0% | |
!!! | GTGTGTAGCTTTTTCATTCT+TGG | - | chr5_3:6165567-6165586 | None:intergenic | 35.0% |
TGTAATGTGTGACATTGATG+AGG | + | chr5_3:6166501-6166520 | Msa0794290:CDS | 35.0% | |
TATTGATGTTTGATGGAAGC+AGG | + | chr5_3:6166580-6166599 | Msa0794290:intron | 35.0% | |
TTCAGCTCTGTAACAATCAA+AGG | - | chr5_3:6166770-6166789 | None:intergenic | 35.0% | |
! | GAGAGGTATGATGTAATAGT+TGG | + | chr5_3:6166805-6166824 | Msa0794290:CDS | 35.0% |
AGTGAGCTCATAAAAGTCTT+TGG | - | chr5_3:6166878-6166897 | None:intergenic | 35.0% | |
! | ATTCCACCTTTCTTCAGTTT+TGG | - | chr5_3:6166907-6166926 | None:intergenic | 35.0% |
GTTATTATTCTTATGCAGGC+AGG | + | chr5_3:6167032-6167051 | Msa0794290:intron | 35.0% | |
TACATGAGAAAACTTCTGTG+TGG | - | chr5_3:6167076-6167095 | None:intergenic | 35.0% | |
TCTGCAAACATGAAGAAAGT+AGG | - | chr5_3:6167217-6167236 | None:intergenic | 35.0% | |
TTTCTTCATGTTTGCAGATG+TGG | + | chr5_3:6167219-6167238 | Msa0794290:intron | 35.0% | |
TCCCATCTTATGCTGATATT+TGG | + | chr5_3:6167260-6167279 | Msa0794290:CDS | 35.0% | |
CCCAAATATCAGCATAAGAT+GGG | - | chr5_3:6167264-6167283 | None:intergenic | 35.0% | |
CCCATCTTATGCTGATATTT+GGG | + | chr5_3:6167261-6167280 | Msa0794290:CDS | 35.0% | |
CCATCTTATGCTGATATTTG+GGG | + | chr5_3:6167262-6167281 | Msa0794290:CDS | 35.0% | |
TTATGCTGATATTTGGGGAT+GGG | + | chr5_3:6167267-6167286 | Msa0794290:CDS | 35.0% | |
CACACAATGCAAGTTAACAA+AGG | + | chr5_3:6167734-6167753 | Msa0794290:three_prime_UTR | 35.0% | |
AAAGAAAGTGAAGAGCAGAA+AGG | - | chr5_3:6167796-6167815 | None:intergenic | 35.0% | |
!!! | CACTTTCTTTTTTTACCCCT+TGG | + | chr5_3:6167806-6167825 | Msa0794290:three_prime_UTR | 35.0% |
!!! | CTTACAAGCCTTTTTTTGAG+TGG | - | chr5_3:6167844-6167863 | None:intergenic | 35.0% |
! | GCTTGTAAGTGTTGTATCAA+TGG | + | chr5_3:6167855-6167874 | Msa0794290:three_prime_UTR | 35.0% |
TTGTATCAATGGACAACCAA+TGG | + | chr5_3:6167866-6167885 | Msa0794290:three_prime_UTR | 35.0% | |
TCCTATCTTGTGCTTCTATT+TGG | + | chr5_3:6167890-6167909 | Msa0794290:three_prime_UTR | 35.0% | |
! | TCCAAATAGAAGCACAAGAT+AGG | - | chr5_3:6167894-6167913 | None:intergenic | 35.0% |
TATCATAGGTAGCCAATGTT+TGG | + | chr5_3:6168064-6168083 | Msa0794290:three_prime_UTR | 35.0% | |
GATAAGATACGGTCCTAACT+AGG | + | chr5_3:6165029-6165048 | Msa0794290:five_prime_UTR | 40.0% | |
AATACATTACACACTGCGTG+CGG | - | chr5_3:6165082-6165101 | None:intergenic | 40.0% | |
GGTGAAGTAGCTTACACAAA+TGG | + | chr5_3:6165343-6165362 | Msa0794290:CDS | 40.0% | |
AAAAGCCATTCACCACCTAA+TGG | + | chr5_3:6165403-6165422 | Msa0794290:CDS | 40.0% | |
CTCTTCCTATAACCATTAGG+TGG | - | chr5_3:6165418-6165437 | None:intergenic | 40.0% | |
CAGCTCTTCCTATAACCATT+AGG | - | chr5_3:6165421-6165440 | None:intergenic | 40.0% | |
ATGGTTATAGGAAGAGCTGT+TGG | + | chr5_3:6165422-6165441 | Msa0794290:CDS | 40.0% | |
CAAAGAGCCGCCATATATAA+AGG | - | chr5_3:6165662-6165681 | None:intergenic | 40.0% | |
CTTTATATATGGCGGCTCTT+TGG | + | chr5_3:6165660-6165679 | Msa0794290:intron | 40.0% | |
ATAGAAGCCAAGGAACAAGA+AGG | + | chr5_3:6165733-6165752 | Msa0794290:intron | 40.0% | |
!! | AAAAGCACCTTCTTGTTCCT+TGG | - | chr5_3:6165743-6165762 | None:intergenic | 40.0% |
!!! | ACAAGAAGGTGCTTTTCCAT+TGG | + | chr5_3:6165747-6165766 | Msa0794290:intron | 40.0% |
!!! | CAAGAAGGTGCTTTTCCATT+GGG | + | chr5_3:6165748-6165767 | Msa0794290:intron | 40.0% |
TTTGTCTCACTCAAACCCAA+TGG | - | chr5_3:6165766-6165785 | None:intergenic | 40.0% | |
ACAATGCAATGTCTTGGTAC+TGG | - | chr5_3:6166092-6166111 | None:intergenic | 40.0% | |
GTACCAAGACATTGCATTGT+TGG | + | chr5_3:6166092-6166111 | Msa0794290:CDS | 40.0% | |
TGTCCAACAATGCAATGTCT+TGG | - | chr5_3:6166098-6166117 | None:intergenic | 40.0% | |
TTGCAGGCATTAGTACTTGA+TGG | + | chr5_3:6166232-6166251 | Msa0794290:intron | 40.0% | |
TGCAGGCATTAGTACTTGAT+GGG | + | chr5_3:6166233-6166252 | Msa0794290:intron | 40.0% | |
CTGGATGAACAAGACATTCA+TGG | - | chr5_3:6166294-6166313 | None:intergenic | 40.0% | |
TTTATTATGGGAGGAGGAGA+AGG | + | chr5_3:6166433-6166452 | Msa0794290:CDS | 40.0% | |
TGTTACAGAGCTGAACTAGA+AGG | + | chr5_3:6166775-6166794 | Msa0794290:intron | 40.0% | |
AACTAGAAGGCAAAGAAGAG+AGG | + | chr5_3:6166788-6166807 | Msa0794290:CDS | 40.0% | |
GATTTGGCTGATCCAATAGA+AGG | + | chr5_3:6166829-6166848 | Msa0794290:CDS | 40.0% | |
CTCAAGCCAAAACTGAAGAA+AGG | + | chr5_3:6166898-6166917 | Msa0794290:CDS | 40.0% | |
AAGCCAAAACTGAAGAAAGG+TGG | + | chr5_3:6166901-6166920 | Msa0794290:CDS | 40.0% | |
AGGTGGAATATTTGTGACAC+AGG | + | chr5_3:6166918-6166937 | Msa0794290:CDS | 40.0% | |
GGAATATTTGTGACACAGGT+AGG | + | chr5_3:6166922-6166941 | Msa0794290:intron | 40.0% | |
ATATTTGTGACACAGGTAGG+TGG | + | chr5_3:6166925-6166944 | Msa0794290:intron | 40.0% | |
GATGGGATATGAGCTGAATA+AGG | - | chr5_3:6167247-6167266 | None:intergenic | 40.0% | |
CCCCAAATATCAGCATAAGA+TGG | - | chr5_3:6167265-6167284 | None:intergenic | 40.0% | |
CTTATGCTGATATTTGGGGA+TGG | + | chr5_3:6167266-6167285 | Msa0794290:CDS | 40.0% | |
! | TTTTTCCCTTGGCCTATAAC+AGG | + | chr5_3:6167371-6167390 | Msa0794290:intron | 40.0% |
! | GAGAATCTGAAGCCTGTTAT+AGG | - | chr5_3:6167386-6167405 | None:intergenic | 40.0% |
GTTCGTAACTCGTAAGCAAA+TGG | + | chr5_3:6167519-6167538 | Msa0794290:intron | 40.0% | |
TGAGACTCATGTATACACAG+AGG | + | chr5_3:6167631-6167650 | Msa0794290:CDS | 40.0% | |
GAGACTCATGTATACACAGA+GGG | + | chr5_3:6167632-6167651 | Msa0794290:CDS | 40.0% | |
GCTAGGTTCATATATGGTCA+TGG | + | chr5_3:6167659-6167678 | Msa0794290:CDS | 40.0% | |
AAGCACAAGATAGGAACCAT+TGG | - | chr5_3:6167885-6167904 | None:intergenic | 40.0% | |
TAGGTAGCCAATGTTTGGTT+TGG | + | chr5_3:6168069-6168088 | Msa0794290:three_prime_UTR | 40.0% | |
ATACATTACACACTGCGTGC+GGG | - | chr5_3:6165081-6165100 | None:intergenic | 45.0% | |
AGCTGGGAAATCTAGCAAAG+TGG | - | chr5_3:6165162-6165181 | None:intergenic | 45.0% | |
! | TGAGAGCAAAGCACCATCTA+AGG | - | chr5_3:6165471-6165490 | None:intergenic | 45.0% |
GATGGTGCTTTGCTCTCAAT+AGG | + | chr5_3:6165473-6165492 | Msa0794290:CDS | 45.0% | |
TTGTTGGACACAAAGCCCTT+TGG | + | chr5_3:6166108-6166127 | Msa0794290:CDS | 45.0% | |
ATAGGATGGTGAAGAAGAGC+TGG | - | chr5_3:6166313-6166332 | None:intergenic | 45.0% | |
AGGAGAAGGATCTACTGCAA+GGG | + | chr5_3:6166447-6166466 | Msa0794290:CDS | 45.0% | |
TGATGTTTGATGGAAGCAGG+AGG | + | chr5_3:6166583-6166602 | Msa0794290:intron | 45.0% | |
CGACTTCAAGTCTCGAATCA+TGG | - | chr5_3:6166655-6166674 | None:intergenic | 45.0% | |
TTGGCTGATCCAATAGAAGG+AGG | + | chr5_3:6166832-6166851 | Msa0794290:CDS | 45.0% | |
TAGCAAGGACCTCCTTCTAT+TGG | - | chr5_3:6166844-6166863 | None:intergenic | 45.0% | |
TGAAGCCTGTTATAGGCCAA+GGG | - | chr5_3:6167379-6167398 | None:intergenic | 45.0% | |
ACAGGCTTCAGATTCTCCAT+TGG | + | chr5_3:6167389-6167408 | Msa0794290:intron | 45.0% | |
TCTTCAGCACTAAGGTCCAA+TGG | - | chr5_3:6167408-6167427 | None:intergenic | 45.0% | |
GGAGCAGCTAGGTTCATATA+TGG | + | chr5_3:6167653-6167672 | Msa0794290:CDS | 45.0% | |
! | TGGTGAAAGTACAAGCCAAG+GGG | - | chr5_3:6167824-6167843 | None:intergenic | 45.0% |
! | GTGGTGAAAGTACAAGCCAA+GGG | - | chr5_3:6167825-6167844 | None:intergenic | 45.0% |
! | AGTGGTGAAAGTACAAGCCA+AGG | - | chr5_3:6167826-6167845 | None:intergenic | 45.0% |
TTGGTCGCCAAACCAAACAT+TGG | - | chr5_3:6168079-6168098 | None:intergenic | 45.0% | |
AGATACGGTCCTAACTAGGG+AGG | + | chr5_3:6165033-6165052 | Msa0794290:five_prime_UTR | 50.0% | |
GATACGGTCCTAACTAGGGA+GGG | + | chr5_3:6165034-6165053 | Msa0794290:five_prime_UTR | 50.0% | |
GAGGAGAAGGATCTACTGCA+AGG | + | chr5_3:6166446-6166465 | Msa0794290:CDS | 50.0% | |
TGTTTGATGGAAGCAGGAGG+TGG | + | chr5_3:6166586-6166605 | Msa0794290:intron | 50.0% | |
TTTGTGACACAGGTAGGTGG+CGG | + | chr5_3:6166928-6166947 | Msa0794290:intron | 50.0% | |
GTGTGGCTGAATATTCCAGC+AGG | - | chr5_3:6167059-6167078 | None:intergenic | 50.0% | |
TGATATTTGGGGATGGGTCC+TGG | + | chr5_3:6167273-6167292 | Msa0794290:CDS | 50.0% | |
CTGAAGCCTGTTATAGGCCA+AGG | - | chr5_3:6167380-6167399 | None:intergenic | 50.0% | |
TATACACAGAGGGAGCAGCT+AGG | + | chr5_3:6167642-6167661 | Msa0794290:CDS | 50.0% | |
GGCTGCAGCATCTTGCATAC+AGG | + | chr5_3:6166060-6166079 | Msa0794290:intron | 55.0% | |
GGACACAAAGCCCTTTGGCA+AGG | + | chr5_3:6166113-6166132 | Msa0794290:CDS | 55.0% | |
CTACTGCAAGGGAACTGCTC+AGG | + | chr5_3:6166458-6166477 | Msa0794290:CDS | 55.0% | |
AAGTCGTCATCAACGACGCG+AGG | + | chr5_3:6166669-6166688 | Msa0794290:CDS | 55.0% | |
! | GTGACACAGGTAGGTGGCGG+AGG | + | chr5_3:6166931-6166950 | Msa0794290:intron | 65.0% |
!! | ACACAGGTAGGTGGCGGAGG+AGG | + | chr5_3:6166934-6166953 | Msa0794290:intron | 65.0% |
CTTATGCAGGCAGGGCCTGC+TGG | + | chr5_3:6167041-6167060 | Msa0794290:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 6165024 | 6168108 | 6165024 | ID=Msa0794290;Name=Msa0794290 |
chr5_3 | mRNA | 6165024 | 6168108 | 6165024 | ID=Msa0794290-mRNA-1;Parent=Msa0794290;Name=Msa0794290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=316|1|1|1|1|1|10|414|336 |
chr5_3 | exon | 6165024 | 6165494 | 6165024 | ID=Msa0794290-mRNA-1:exon:2459;Parent=Msa0794290-mRNA-1 |
chr5_3 | exon | 6166068 | 6166134 | 6166068 | ID=Msa0794290-mRNA-1:exon:2460;Parent=Msa0794290-mRNA-1 |
chr5_3 | exon | 6166238 | 6166332 | 6166238 | ID=Msa0794290-mRNA-1:exon:2461;Parent=Msa0794290-mRNA-1 |
chr5_3 | exon | 6166420 | 6166522 | 6166420 | ID=Msa0794290-mRNA-1:exon:2462;Parent=Msa0794290-mRNA-1 |
chr5_3 | exon | 6166602 | 6166690 | 6166602 | ID=Msa0794290-mRNA-1:exon:2463;Parent=Msa0794290-mRNA-1 |
chr5_3 | exon | 6166783 | 6166939 | 6166783 | ID=Msa0794290-mRNA-1:exon:2464;Parent=Msa0794290-mRNA-1 |
chr5_3 | exon | 6167050 | 6167125 | 6167050 | ID=Msa0794290-mRNA-1:exon:2465;Parent=Msa0794290-mRNA-1 |
chr5_3 | exon | 6167236 | 6167294 | 6167236 | ID=Msa0794290-mRNA-1:exon:2466;Parent=Msa0794290-mRNA-1 |
chr5_3 | exon | 6167393 | 6167529 | 6167393 | ID=Msa0794290-mRNA-1:exon:2467;Parent=Msa0794290-mRNA-1 |
chr5_3 | exon | 6167622 | 6168108 | 6167622 | ID=Msa0794290-mRNA-1:exon:2468;Parent=Msa0794290-mRNA-1 |
chr5_3 | five_prime_UTR | 6165024 | 6165339 | 6165024 | ID=Msa0794290-mRNA-1:five_prime_utr;Parent=Msa0794290-mRNA-1 |
chr5_3 | CDS | 6165340 | 6165494 | 6165340 | ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1 |
chr5_3 | CDS | 6166068 | 6166134 | 6166068 | ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1 |
chr5_3 | CDS | 6166238 | 6166332 | 6166238 | ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1 |
chr5_3 | CDS | 6166420 | 6166522 | 6166420 | ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1 |
chr5_3 | CDS | 6166602 | 6166690 | 6166602 | ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1 |
chr5_3 | CDS | 6166783 | 6166939 | 6166783 | ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1 |
chr5_3 | CDS | 6167050 | 6167125 | 6167050 | ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1 |
chr5_3 | CDS | 6167236 | 6167294 | 6167236 | ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1 |
chr5_3 | CDS | 6167393 | 6167529 | 6167393 | ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1 |
chr5_3 | CDS | 6167622 | 6167694 | 6167622 | ID=Msa0794290-mRNA-1:cds;Parent=Msa0794290-mRNA-1 |
chr5_3 | three_prime_UTR | 6167695 | 6168108 | 6167695 | ID=Msa0794290-mRNA-1:three_prime_utr;Parent=Msa0794290-mRNA-1 |
Gene Sequence |
Protein sequence |