Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795770 | sp|P62302|RS13_SOYBN | 78.102 | 137 | 6 | 1 | 1 | 113 | 1 | 137 | 6.58e-68 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795770 | A0A371GHU5 | 74.375 | 160 | 12 | 1 | 1 | 131 | 27 | 186 | 7.33e-74 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0795770 | Msa0828890 | 0.963937 | 1.062568e-122 | -8.615850e-47 |
| Msa0795770 | Msa0833550 | 0.942892 | 3.202884e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795770 | MtrunA17_Chr5g0398801 | 81.752 | 137 | 1 | 1 | 1 | 113 | 1 | 137 | 5.50e-72 | 213 |
| Msa0795770 | MtrunA17_Chr4g0011261 | 78.102 | 137 | 6 | 1 | 1 | 113 | 1 | 137 | 1.82e-68 | 204 |
| Msa0795770 | MtrunA17_Chr4g0056921 | 75.912 | 137 | 9 | 1 | 1 | 113 | 1 | 137 | 3.22e-67 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795770 | AT4G00100.1 | 75.912 | 137 | 9 | 1 | 1 | 113 | 1 | 137 | 4.60e-68 | 203 |
| Msa0795770 | AT3G60770.1 | 75.182 | 137 | 10 | 1 | 1 | 113 | 1 | 137 | 3.68e-67 | 201 |
Find 62 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATACGCCCCATGGTTTC+TGG | 0.160395 | 5_3:-7822406 | None:intergenic |
| GGCTCATTCTTCATGCTTTC+CGG | 0.179180 | 5_3:+7825009 | Msa0795770:CDS |
| ACATTTCAGTGTTGCGGTAT+AGG | 0.253624 | 5_3:+7822368 | Msa0795770:five_prime_UTR |
| TTGGTTGCTTAGAGCTTGTA+TGG | 0.287863 | 5_3:+7824987 | Msa0795770:CDS |
| ATGCTTGCTGATCGCTTAGA+AGG | 0.322278 | 5_3:+7825298 | Msa0795770:three_prime_UTR |
| CGCCCCATGGTTTCTGGCTT+CGG | 0.325578 | 5_3:-7822400 | None:intergenic |
| CATTTCAGTGTTGCGGTATA+GGG | 0.330127 | 5_3:+7822369 | Msa0795770:five_prime_UTR |
| CTCTTGCTTGTGTTTGGGTT+GGG | 0.345954 | 5_3:-7822290 | None:intergenic |
| GTGCAGCAACCCTCTGTTAC+CGG | 0.381872 | 5_3:-7825028 | None:intergenic |
| AGAAAATTGACTTGCTCCTC+TGG | 0.385566 | 5_3:-7825388 | None:intergenic |
| TTACAGAAAGGCAATACAAT+AGG | 0.398517 | 5_3:-7825357 | None:intergenic |
| GGTTTCAATCCGCAAGCATT+TGG | 0.402835 | 5_3:+7823557 | Msa0795770:CDS |
| GTAACAGAGGGTTGCTGCAC+TGG | 0.405636 | 5_3:+7825031 | Msa0795770:CDS |
| AGGTTTATCTAGAGACTTGA+TGG | 0.413371 | 5_3:+7825074 | Msa0795770:CDS |
| ACTCTTGCTTGTGTTTGGGT+TGG | 0.418402 | 5_3:-7822291 | None:intergenic |
| TATTTGCAAGTTTGCTAAGA+AGG | 0.425487 | 5_3:+7822682 | Msa0795770:CDS |
| AATTTATCCCTTGATTAACT+AGG | 0.428497 | 5_3:+7822328 | Msa0795770:five_prime_UTR |
| AAACCGCCTTCTTTATCAAA+TGG | 0.432414 | 5_3:-7823539 | None:intergenic |
| AACAAGGATGAGTCTGAACT+TGG | 0.451307 | 5_3:-7823604 | None:intergenic |
| TACAGATCCTCGGGAATCTC+AGG | 0.472902 | 5_3:-7823516 | None:intergenic |
| ATTTATCCCTTGATTAACTA+GGG | 0.478848 | 5_3:+7822329 | Msa0795770:five_prime_UTR |
| ATCAAATGGTACAGATCCTC+GGG | 0.499985 | 5_3:-7823525 | None:intergenic |
| ATACAAACCCTAGTTAATCA+AGG | 0.505909 | 5_3:-7822336 | None:intergenic |
| TGTTCCTCTCCAAATGCTTG+CGG | 0.511208 | 5_3:-7823566 | None:intergenic |
| ATGGGGCGTATGCATAGTAA+AGG | 0.515615 | 5_3:+7822415 | Msa0795770:CDS |
| TATCAAATGGTACAGATCCT+CGG | 0.516683 | 5_3:-7823526 | None:intergenic |
| ATATCTTTCTACTTTATCAA+AGG | 0.517054 | 5_3:-7825125 | None:intergenic |
| ATTTGCAAGTTTGCTAAGAA+GGG | 0.526647 | 5_3:+7822683 | Msa0795770:CDS |
| ATCAACAACTGCCAGCACTT+TGG | 0.526669 | 5_3:+7824968 | Msa0795770:CDS |
| GAAGAGATCTTAAGCCAGCT+AGG | 0.528413 | 5_3:-7822563 | None:intergenic |
| TGCATTTACAAATGAAACAT+AGG | 0.530773 | 5_3:+7825258 | Msa0795770:three_prime_UTR |
| ACAAAAGAACTTCTCCTAGC+TGG | 0.534882 | 5_3:+7822549 | Msa0795770:CDS |
| TAACAAAATAAGAAATTGCA+TGG | 0.540677 | 5_3:-7825098 | None:intergenic |
| TCTGTACCATTTGATAAAGA+AGG | 0.540683 | 5_3:+7823533 | Msa0795770:CDS |
| TGGTTGCTTAGAGCTTGTAT+GGG | 0.548197 | 5_3:+7824988 | Msa0795770:CDS |
| ATACCGCAACACTGAAATGT+TGG | 0.548248 | 5_3:-7822365 | None:intergenic |
| ACAGCCGAAGCCAGAAACCA+TGG | 0.553216 | 5_3:+7822396 | Msa0795770:exon |
| TTACCAACATTTCAGTGTTG+CGG | 0.553262 | 5_3:+7822362 | Msa0795770:five_prime_UTR |
| TGGGGCGTATGCATAGTAAA+GGG | 0.554130 | 5_3:+7822416 | Msa0795770:CDS |
| CAGCCGAAGCCAGAAACCAT+GGG | 0.554217 | 5_3:+7822397 | Msa0795770:exon |
| TGCTGCACTGGCAATCTGCA+AGG | 0.555960 | 5_3:+7825043 | Msa0795770:CDS |
| GCTCTAAGCAACCAAAGTGC+TGG | 0.557410 | 5_3:-7824979 | None:intergenic |
| TCATGCTTTCCGGTAACAGA+GGG | 0.562108 | 5_3:+7825019 | Msa0795770:CDS |
| TGCTTGCTGATCGCTTAGAA+GGG | 0.562937 | 5_3:+7825299 | Msa0795770:three_prime_UTR |
| TTTACTATGCATACGCCCCA+TGG | 0.572915 | 5_3:-7822413 | None:intergenic |
| CTGGAATGCTGATTACAGAA+AGG | 0.578494 | 5_3:-7825369 | None:intergenic |
| GGTTTGACTCCTTCTCAGAT+CGG | 0.582010 | 5_3:+7822704 | Msa0795770:CDS |
| TACAAACCCTAGTTAATCAA+GGG | 0.593495 | 5_3:-7822335 | None:intergenic |
| AGAATAACACCGATCTGAGA+AGG | 0.594247 | 5_3:-7822713 | None:intergenic |
| TTCTGTAATCAGCATTCCAG+AGG | 0.603700 | 5_3:+7825372 | Msa0795770:three_prime_UTR |
| CAATCCGCAAGCATTTGGAG+AGG | 0.603826 | 5_3:+7823562 | Msa0795770:CDS |
| GGTTTATCTAGAGACTTGAT+GGG | 0.612983 | 5_3:+7825075 | Msa0795770:exon |
| GTACCATTTGATAAAGAAGG+CGG | 0.628741 | 5_3:+7823536 | Msa0795770:CDS |
| TGTAATAGCGAGCAAGACGG+TGG | 0.633533 | 5_3:-7823638 | None:intergenic |
| TTCATGCTTTCCGGTAACAG+AGG | 0.633583 | 5_3:+7825018 | Msa0795770:CDS |
| GGTGGATTCTGCTCTCAACA+AGG | 0.636755 | 5_3:-7823620 | None:intergenic |
| GCATTTGGAGAGGAACAGAA+AGG | 0.640840 | 5_3:+7823572 | Msa0795770:CDS |
| GCTTAAGATCTCTTCAGCAG+AGG | 0.666834 | 5_3:+7822571 | Msa0795770:CDS |
| TCTTGTAATAGCGAGCAAGA+CGG | 0.678094 | 5_3:-7823641 | None:intergenic |
| GGAGAGGAACAGAAAGGACA+AGG | 0.687113 | 5_3:+7823578 | Msa0795770:CDS |
| ACTTGCACCTGAGATTCCCG+AGG | 0.712102 | 5_3:+7823509 | Msa0795770:CDS |
| AGCCGAAGCCAGAAACCATG+GGG | 0.712434 | 5_3:+7822398 | Msa0795770:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTATTTATCCAAAA+AGG | - | chr5_3:7822850-7822869 | None:intergenic | 10.0% |
| !! | ATATTAAATAGAAATGTTTA+AGG | + | chr5_3:7823055-7823074 | Msa0795770:intron | 10.0% |
| !! | TATTAAATAGAAATGTTTAA+GGG | + | chr5_3:7823056-7823075 | Msa0795770:intron | 10.0% |
| !!! | AGAATTTCATATTTAAAATT+TGG | - | chr5_3:7823083-7823102 | None:intergenic | 10.0% |
| !!! | TTATATTTTGAATTTGTTTC+AGG | + | chr5_3:7822649-7822668 | Msa0795770:intron | 15.0% |
| !! | ATTTACAAATGATAAAATAG+AGG | + | chr5_3:7822910-7822929 | Msa0795770:intron | 15.0% |
| !!! | TAATATTTTTTTGGAGAATT+CGG | - | chr5_3:7823041-7823060 | None:intergenic | 15.0% |
| !! | TAATGCATTAGTTAAATTTA+TGG | - | chr5_3:7824180-7824199 | None:intergenic | 15.0% |
| !! | TAAATTTAACTAATGCATTA+TGG | + | chr5_3:7824180-7824199 | Msa0795770:intron | 15.0% |
| !! | AAATTTAACTAATGCATTAT+GGG | + | chr5_3:7824181-7824200 | Msa0795770:intron | 15.0% |
| !!! | ATTGAACTTATTTTAAAAAC+AGG | - | chr5_3:7824327-7824346 | None:intergenic | 15.0% |
| !!! | AATATATCCCAATTTTTTGA+GGG | + | chr5_3:7823118-7823137 | Msa0795770:intron | 20.0% |
| !!! | TGCTATCTTAAATATTTTGA+AGG | - | chr5_3:7823162-7823181 | None:intergenic | 20.0% |
| !! | GAAGATTACATATGTATTTA+GGG | - | chr5_3:7823326-7823345 | None:intergenic | 20.0% |
| !! | TGAAGATTACATATGTATTT+AGG | - | chr5_3:7823327-7823346 | None:intergenic | 20.0% |
| !! | AAAAAAAGTAGATAATGTTG+AGG | + | chr5_3:7823430-7823449 | Msa0795770:intron | 20.0% |
| !!! | TCATTGTTTTGTTAATATGA+AGG | + | chr5_3:7823486-7823505 | Msa0795770:intron | 20.0% |
| !! | TTTCTTCCATTTATTTGAAA+GGG | + | chr5_3:7824081-7824100 | Msa0795770:intron | 20.0% |
| !! | ATGAACTCAAAATTAAAACT+TGG | - | chr5_3:7824277-7824296 | None:intergenic | 20.0% |
| !! | TATGCTTATACTTATTTAGT+AGG | - | chr5_3:7824458-7824477 | None:intergenic | 20.0% |
| !! | AATATAATTGGTATATGCAT+GGG | - | chr5_3:7824529-7824548 | None:intergenic | 20.0% |
| !! | AACAGAGTAAACAATATAAT+TGG | - | chr5_3:7824541-7824560 | None:intergenic | 20.0% |
| !! | AGCAATTTATATCAAAGTAA+CGG | - | chr5_3:7824593-7824612 | None:intergenic | 20.0% |
| !! | TAACAAAATAAGAAATTGCA+TGG | - | chr5_3:7825101-7825120 | None:intergenic | 20.0% |
| !! | ATATCTTTCTACTTTATCAA+AGG | - | chr5_3:7825128-7825147 | None:intergenic | 20.0% |
| ! | AATTTATCCCTTGATTAACT+AGG | + | chr5_3:7822328-7822347 | Msa0795770:five_prime_UTR | 25.0% |
| ! | ATTTATCCCTTGATTAACTA+GGG | + | chr5_3:7822329-7822348 | Msa0795770:five_prime_UTR | 25.0% |
| ! | CTCAAAAAATTGGGATATAT+TGG | - | chr5_3:7823119-7823138 | None:intergenic | 25.0% |
| !!! | CAATATATCCCAATTTTTTG+AGG | + | chr5_3:7823117-7823136 | Msa0795770:intron | 25.0% |
| ! | TATTTGTCCCTCAAAAAATT+GGG | - | chr5_3:7823128-7823147 | None:intergenic | 25.0% |
| ! | ATATTTGTCCCTCAAAAAAT+TGG | - | chr5_3:7823129-7823148 | None:intergenic | 25.0% |
| ! | AAATACAAAACAAATGGCAA+AGG | - | chr5_3:7823713-7823732 | None:intergenic | 25.0% |
| ! | GATGGAAAATACAAAACAAA+TGG | - | chr5_3:7823719-7823738 | None:intergenic | 25.0% |
| ! | TGACATAAACAAGGTTAATT+CGG | - | chr5_3:7823776-7823795 | None:intergenic | 25.0% |
| ! | AAAAGGGAAGTAATAATCAA+AGG | + | chr5_3:7824021-7824040 | Msa0795770:intron | 25.0% |
| ! | AAAGGGAAGTAATAATCAAA+GGG | + | chr5_3:7824022-7824041 | Msa0795770:intron | 25.0% |
| ! | AAGTAATAATCAAAGGGTAA+AGG | + | chr5_3:7824028-7824047 | Msa0795770:intron | 25.0% |
| ! | CTTTCTTCCATTTATTTGAA+AGG | + | chr5_3:7824080-7824099 | Msa0795770:intron | 25.0% |
| ! | TTAAAACTTGGAAAACATGA+AGG | - | chr5_3:7824265-7824284 | None:intergenic | 25.0% |
| !!! | TTCGTTCTAAATTTTTACTC+AGG | + | chr5_3:7824486-7824505 | Msa0795770:intron | 25.0% |
| ! | CAATATAATTGGTATATGCA+TGG | - | chr5_3:7824530-7824549 | None:intergenic | 25.0% |
| !! | ATCAATTTTTGTTAATCACC+AGG | + | chr5_3:7824561-7824580 | Msa0795770:intron | 25.0% |
| !! | TCAATTTTTGTTAATCACCA+GGG | + | chr5_3:7824562-7824581 | Msa0795770:intron | 25.0% |
| !! | GCATAATATTGTTTCTCAAT+AGG | + | chr5_3:7824767-7824786 | Msa0795770:intron | 25.0% |
| ! | TTCTCAATAGGCTAATATTA+TGG | + | chr5_3:7824779-7824798 | Msa0795770:intron | 25.0% |
| ! | TGCATTTACAAATGAAACAT+AGG | + | chr5_3:7825258-7825277 | Msa0795770:three_prime_UTR | 25.0% |
| ! | TAGAAGGGAAAAATTTACAT+CGG | + | chr5_3:7825314-7825333 | Msa0795770:three_prime_UTR | 25.0% |
| ! | TTTTACTCTTGCTTGTGTTT+GGG | - | chr5_3:7822298-7822317 | None:intergenic | 30.0% |
| ! | TTTTTACTCTTGCTTGTGTT+TGG | - | chr5_3:7822299-7822318 | None:intergenic | 30.0% |
| TACAAACCCTAGTTAATCAA+GGG | - | chr5_3:7822338-7822357 | None:intergenic | 30.0% | |
| ATACAAACCCTAGTTAATCA+AGG | - | chr5_3:7822339-7822358 | None:intergenic | 30.0% | |
| GAAGAATGTTGAATTGAGAT+TGG | - | chr5_3:7822457-7822476 | None:intergenic | 30.0% | |
| GAGAAGGAATAAAATTGAAG+AGG | - | chr5_3:7822479-7822498 | None:intergenic | 30.0% | |
| !! | CATTGATTTGATTGCAGTAA+GGG | + | chr5_3:7822503-7822522 | Msa0795770:intron | 30.0% |
| !! | TATTTGCAAGTTTGCTAAGA+AGG | + | chr5_3:7822682-7822701 | Msa0795770:CDS | 30.0% |
| !! | ATTTGCAAGTTTGCTAAGAA+GGG | + | chr5_3:7822683-7822702 | Msa0795770:CDS | 30.0% |
| !! | AAGCTGTTTTCACAAGTTAT+CGG | + | chr5_3:7822956-7822975 | Msa0795770:intron | 30.0% |
| !!! | ATTCATTTTTAGTCACCACA+TGG | - | chr5_3:7823388-7823407 | None:intergenic | 30.0% |
| CAATGAATGAATAAACTCAG+CGG | - | chr5_3:7823472-7823491 | None:intergenic | 30.0% | |
| TCTGTACCATTTGATAAAGA+AGG | + | chr5_3:7823533-7823552 | Msa0795770:CDS | 30.0% | |
| AATCTTACTATTTCCAGACA+GGG | - | chr5_3:7823683-7823702 | None:intergenic | 30.0% | |
| AAATCTTACTATTTCCAGAC+AGG | - | chr5_3:7823684-7823703 | None:intergenic | 30.0% | |
| TTGTAGTTGAATCAATTGGA+TGG | - | chr5_3:7823737-7823756 | None:intergenic | 30.0% | |
| GCATTTGTAGTTGAATCAAT+TGG | - | chr5_3:7823741-7823760 | None:intergenic | 30.0% | |
| TTTGGCTAATGACATAAACA+AGG | - | chr5_3:7823785-7823804 | None:intergenic | 30.0% | |
| ! | TTTGGAATGCCTTAAAACTT+TGG | + | chr5_3:7823947-7823966 | Msa0795770:intron | 30.0% |
| TTGGAATGCCTTAAAACTTT+GGG | + | chr5_3:7823948-7823967 | Msa0795770:intron | 30.0% | |
| CCAGTAAAAAAATGGAATCT+AGG | - | chr5_3:7823976-7823995 | None:intergenic | 30.0% | |
| !!! | CCTAGATTCCATTTTTTTAC+TGG | + | chr5_3:7823973-7823992 | Msa0795770:intron | 30.0% |
| !!! | ATTCCATTTTTTTACTGGCA+GGG | + | chr5_3:7823978-7823997 | Msa0795770:intron | 30.0% |
| GAATGACCCTTTCAAATAAA+TGG | - | chr5_3:7824090-7824109 | None:intergenic | 30.0% | |
| TTGAAAGGGTCATTCATATT+TGG | + | chr5_3:7824095-7824114 | Msa0795770:intron | 30.0% | |
| TGAAAGGGTCATTCATATTT+GGG | + | chr5_3:7824096-7824115 | Msa0795770:intron | 30.0% | |
| AATATTATGGTGTGATTGCT+TGG | + | chr5_3:7824792-7824811 | Msa0795770:intron | 30.0% | |
| AGAATTGCAAATTAACAGGA+AGG | - | chr5_3:7824905-7824924 | None:intergenic | 30.0% | |
| TGGTAGAATTGCAAATTAAC+AGG | - | chr5_3:7824909-7824928 | None:intergenic | 30.0% | |
| TTACAGAAAGGCAATACAAT+AGG | - | chr5_3:7825360-7825379 | None:intergenic | 30.0% | |
| TTACCAACATTTCAGTGTTG+CGG | + | chr5_3:7822362-7822381 | Msa0795770:five_prime_UTR | 35.0% | |
| TGTTGAATTGAGATTGGAAG+AGG | - | chr5_3:7822451-7822470 | None:intergenic | 35.0% | |
| ATCAAATCAATGGTGTGAGA+AGG | - | chr5_3:7822495-7822514 | None:intergenic | 35.0% | |
| CCTTACTGCAATCAAATCAA+TGG | - | chr5_3:7822505-7822524 | None:intergenic | 35.0% | |
| !! | CCATTGATTTGATTGCAGTA+AGG | + | chr5_3:7822502-7822521 | Msa0795770:intron | 35.0% |
| ! | AGTTCTTTTGTAGGGTAAAG+CGG | - | chr5_3:7822540-7822559 | None:intergenic | 35.0% |
| ! | CTAGGAGAAGTTCTTTTGTA+GGG | - | chr5_3:7822548-7822567 | None:intergenic | 35.0% |
| GTTATTCTTCGTGATTCTCA+CGG | + | chr5_3:7822728-7822747 | Msa0795770:intron | 35.0% | |
| !! | AGCTGTTTTCACAAGTTATC+GGG | + | chr5_3:7822957-7822976 | Msa0795770:intron | 35.0% |
| TGAGGGACAAATATTAGAAC+AGG | + | chr5_3:7823135-7823154 | Msa0795770:intron | 35.0% | |
| GAGGGACAAATATTAGAACA+GGG | + | chr5_3:7823136-7823155 | Msa0795770:intron | 35.0% | |
| TATCAAATGGTACAGATCCT+CGG | - | chr5_3:7823529-7823548 | None:intergenic | 35.0% | |
| GTACCATTTGATAAAGAAGG+CGG | + | chr5_3:7823536-7823555 | Msa0795770:CDS | 35.0% | |
| AAACCGCCTTCTTTATCAAA+TGG | - | chr5_3:7823542-7823561 | None:intergenic | 35.0% | |
| ATCTTACTATTTCCAGACAG+GGG | - | chr5_3:7823682-7823701 | None:intergenic | 35.0% | |
| TTGATTCAACTACAAATGCC+AGG | + | chr5_3:7823742-7823761 | Msa0795770:intron | 35.0% | |
| CAAAGCTCAATATCGAAGTT+TGG | - | chr5_3:7823803-7823822 | None:intergenic | 35.0% | |
| AACTTCGATATTGAGCTTTG+TGG | + | chr5_3:7823803-7823822 | Msa0795770:intron | 35.0% | |
| TTGAATTCGTTTGCTTGTCT+AGG | + | chr5_3:7823881-7823900 | Msa0795770:intron | 35.0% | |
| TGAATTCGTTTGCTTGTCTA+GGG | + | chr5_3:7823882-7823901 | Msa0795770:intron | 35.0% | |
| TGGAATGCCTTAAAACTTTG+GGG | + | chr5_3:7823949-7823968 | Msa0795770:intron | 35.0% | |
| !!! | GATTCCATTTTTTTACTGGC+AGG | + | chr5_3:7823977-7823996 | Msa0795770:intron | 35.0% |
| TTTCCCTGCCAGTAAAAAAA+TGG | - | chr5_3:7823984-7824003 | None:intergenic | 35.0% | |
| TACGAGGCATGTTTACAAAA+AGG | + | chr5_3:7824004-7824023 | Msa0795770:intron | 35.0% | |
| ACGAGGCATGTTTACAAAAA+GGG | + | chr5_3:7824005-7824024 | Msa0795770:intron | 35.0% | |
| GTTAAACGTTCTATTCAGAG+AGG | - | chr5_3:7824219-7824238 | None:intergenic | 35.0% | |
| AAAGACTTCAATGTCACTCT+TGG | - | chr5_3:7824411-7824430 | None:intergenic | 35.0% | |
| GTAGGATAAAACACATACGA+AGG | - | chr5_3:7824440-7824459 | None:intergenic | 35.0% | |
| CAAAAGTCATTAGTTGCGAT+AGG | - | chr5_3:7824936-7824955 | None:intergenic | 35.0% | |
| AGGTTTATCTAGAGACTTGA+TGG | + | chr5_3:7825074-7825093 | Msa0795770:CDS | 35.0% | |
| GGTTTATCTAGAGACTTGAT+GGG | + | chr5_3:7825075-7825094 | Msa0795770:exon | 35.0% | |
| ATACCGCAACACTGAAATGT+TGG | - | chr5_3:7822368-7822387 | None:intergenic | 40.0% | |
| ACATTTCAGTGTTGCGGTAT+AGG | + | chr5_3:7822368-7822387 | Msa0795770:five_prime_UTR | 40.0% | |
| CATTTCAGTGTTGCGGTATA+GGG | + | chr5_3:7822369-7822388 | Msa0795770:five_prime_UTR | 40.0% | |
| ! | GCTAGGAGAAGTTCTTTTGT+AGG | - | chr5_3:7822549-7822568 | None:intergenic | 40.0% |
| ACAAAAGAACTTCTCCTAGC+TGG | + | chr5_3:7822549-7822568 | Msa0795770:CDS | 40.0% | |
| AGAATAACACCGATCTGAGA+AGG | - | chr5_3:7822716-7822735 | None:intergenic | 40.0% | |
| !! | CTCTCTATGCTGTGTTGTTT+CGG | + | chr5_3:7822814-7822833 | Msa0795770:intron | 40.0% |
| !! | CTGTGTTGTTTCGGTTTGTT+AGG | + | chr5_3:7822823-7822842 | Msa0795770:intron | 40.0% |
| !!! | TCGGTTTGTTAGGTCCTTTT+TGG | + | chr5_3:7822833-7822852 | Msa0795770:intron | 40.0% |
| !! | GCTGTTTTCACAAGTTATCG+GGG | + | chr5_3:7822958-7822977 | Msa0795770:intron | 40.0% |
| !! | ACCTGTTCGTAAGCTGTTTT+CGG | - | chr5_3:7823219-7823238 | None:intergenic | 40.0% |
| CCACATGGACACAAATTCAT+AGG | - | chr5_3:7823373-7823392 | None:intergenic | 40.0% | |
| CCTATGAATTTGTGTCCATG+TGG | + | chr5_3:7823370-7823389 | Msa0795770:intron | 40.0% | |
| ATCAAATGGTACAGATCCTC+GGG | - | chr5_3:7823528-7823547 | None:intergenic | 40.0% | |
| AACAAGGATGAGTCTGAACT+TGG | - | chr5_3:7823607-7823626 | None:intergenic | 40.0% | |
| TCTTGTAATAGCGAGCAAGA+CGG | - | chr5_3:7823644-7823663 | None:intergenic | 40.0% | |
| TCTTACTATTTCCAGACAGG+GGG | - | chr5_3:7823681-7823700 | None:intergenic | 40.0% | |
| ! | TTCGATATTGAGCTTTGTGG+TGG | + | chr5_3:7823806-7823825 | Msa0795770:intron | 40.0% |
| GTGGTATGCATTAGATCGAT+CGG | + | chr5_3:7823825-7823844 | Msa0795770:intron | 40.0% | |
| GAATTCGTTTGCTTGTCTAG+GGG | + | chr5_3:7823883-7823902 | Msa0795770:intron | 40.0% | |
| ! | TCTAGGTCCCCAAAGTTTTA+AGG | - | chr5_3:7823959-7823978 | None:intergenic | 40.0% |
| TGGGTCCTAGTGAACTTTAT+GGG | - | chr5_3:7824125-7824144 | None:intergenic | 40.0% | |
| ATGGGTCCTAGTGAACTTTA+TGG | - | chr5_3:7824126-7824145 | None:intergenic | 40.0% | |
| AATAAGTTCAATTGCGTGCC+TGG | + | chr5_3:7824335-7824354 | Msa0795770:intron | 40.0% | |
| CTGGTTGACTAGATGAAAAG+CGG | + | chr5_3:7824354-7824373 | Msa0795770:intron | 40.0% | |
| TCAAAGTAACGGTAAAACCC+TGG | - | chr5_3:7824582-7824601 | None:intergenic | 40.0% | |
| GCACAGCAACATGAATGAAA+TGG | + | chr5_3:7824651-7824670 | Msa0795770:intron | 40.0% | |
| GCAAGACTAGAAAGTTCAAG+AGG | - | chr5_3:7824883-7824902 | None:intergenic | 40.0% | |
| CATTAGTTGCGATAGGAACA+TGG | - | chr5_3:7824929-7824948 | None:intergenic | 40.0% | |
| TTGGTTGCTTAGAGCTTGTA+TGG | + | chr5_3:7824987-7825006 | Msa0795770:CDS | 40.0% | |
| TGGTTGCTTAGAGCTTGTAT+GGG | + | chr5_3:7824988-7825007 | Msa0795770:CDS | 40.0% | |
| !! | CAATCTGCAAGGTCATTTTG+AGG | + | chr5_3:7825054-7825073 | Msa0795770:CDS | 40.0% |
| ! | CTGGAATGCTGATTACAGAA+AGG | - | chr5_3:7825372-7825391 | None:intergenic | 40.0% |
| TTCTGTAATCAGCATTCCAG+AGG | + | chr5_3:7825372-7825391 | Msa0795770:three_prime_UTR | 40.0% | |
| !! | AGAAAATTGACTTGCTCCTC+TGG | - | chr5_3:7825391-7825410 | None:intergenic | 40.0% |
| ! | CTCTTGCTTGTGTTTGGGTT+GGG | - | chr5_3:7822293-7822312 | None:intergenic | 45.0% |
| ACTCTTGCTTGTGTTTGGGT+TGG | - | chr5_3:7822294-7822313 | None:intergenic | 45.0% | |
| TTTACTATGCATACGCCCCA+TGG | - | chr5_3:7822416-7822435 | None:intergenic | 45.0% | |
| ATGGGGCGTATGCATAGTAA+AGG | + | chr5_3:7822415-7822434 | Msa0795770:CDS | 45.0% | |
| TGGGGCGTATGCATAGTAAA+GGG | + | chr5_3:7822416-7822435 | Msa0795770:CDS | 45.0% | |
| ! | TCTTTTGTAGGGTAAAGCGG+AGG | - | chr5_3:7822537-7822556 | None:intergenic | 45.0% |
| GAAGAGATCTTAAGCCAGCT+AGG | - | chr5_3:7822566-7822585 | None:intergenic | 45.0% | |
| GCTTAAGATCTCTTCAGCAG+AGG | + | chr5_3:7822571-7822590 | Msa0795770:CDS | 45.0% | |
| GGTTTGACTCCTTCTCAGAT+CGG | + | chr5_3:7822704-7822723 | Msa0795770:CDS | 45.0% | |
| !! | TACCGTGAGCTTTGAGGATA+CGG | - | chr5_3:7822793-7822812 | None:intergenic | 45.0% |
| ! | TTTTCACAAGTTATCGGGGC+TGG | + | chr5_3:7822962-7822981 | Msa0795770:intron | 45.0% |
| TTCGGCACCTCAAAATTTCG+AGG | - | chr5_3:7823023-7823042 | None:intergenic | 45.0% | |
| GATAGCATTGCAAGTTACGC+TGG | + | chr5_3:7823175-7823194 | Msa0795770:intron | 45.0% | |
| GGTTTCAATCCGCAAGCATT+TGG | + | chr5_3:7823557-7823576 | Msa0795770:CDS | 45.0% | |
| TGTTCCTCTCCAAATGCTTG+CGG | - | chr5_3:7823569-7823588 | None:intergenic | 45.0% | |
| GCATTTGGAGAGGAACAGAA+AGG | + | chr5_3:7823572-7823591 | Msa0795770:CDS | 45.0% | |
| ! | GTTAATTCGGTGACTAAGCC+TGG | - | chr5_3:7823763-7823782 | None:intergenic | 45.0% |
| TTTACTGGCAGGGAAATACG+AGG | + | chr5_3:7823988-7824007 | Msa0795770:intron | 45.0% | |
| GGCATCCCATAAAGTTCACT+AGG | + | chr5_3:7824117-7824136 | Msa0795770:intron | 45.0% | |
| ACAAGATCCTTCCTAAGTGC+AGG | - | chr5_3:7824154-7824173 | None:intergenic | 45.0% | |
| ACGTTTAACATCCTTCCCCT+TGG | + | chr5_3:7824230-7824249 | Msa0795770:intron | 45.0% | |
| CGTTTAACATCCTTCCCCTT+GGG | + | chr5_3:7824231-7824250 | Msa0795770:intron | 45.0% | |
| ATGAAGGAAGATGCACCCAA+GGG | - | chr5_3:7824249-7824268 | None:intergenic | 45.0% | |
| GACTAGAGCTGAAGATGACA+CGG | - | chr5_3:7824301-7824320 | None:intergenic | 45.0% | |
| ! | CGCTTTTCATCTAGTCAACC+AGG | - | chr5_3:7824356-7824375 | None:intergenic | 45.0% |
| ATCAACAACTGCCAGCACTT+TGG | + | chr5_3:7824968-7824987 | Msa0795770:CDS | 45.0% | |
| GGCTCATTCTTCATGCTTTC+CGG | + | chr5_3:7825009-7825028 | Msa0795770:CDS | 45.0% | |
| TTCATGCTTTCCGGTAACAG+AGG | + | chr5_3:7825018-7825037 | Msa0795770:CDS | 45.0% | |
| TCATGCTTTCCGGTAACAGA+GGG | + | chr5_3:7825019-7825038 | Msa0795770:CDS | 45.0% | |
| ! | ATGCTTGCTGATCGCTTAGA+AGG | + | chr5_3:7825298-7825317 | Msa0795770:three_prime_UTR | 45.0% |
| ! | TGCTTGCTGATCGCTTAGAA+GGG | + | chr5_3:7825299-7825318 | Msa0795770:three_prime_UTR | 45.0% |
| !!! | ATTTCTATTTAATATTTTTT+TGG | - | chr5_3:7823050-7823069 | None:intergenic | 5.0% |
| !!! | ATTAAAAATTAATTAAGTTT+TGG | + | chr5_3:7823929-7823948 | Msa0795770:intron | 5.0% |
| TGATTCTCACGGCATTGCTC+AGG | + | chr5_3:7822739-7822758 | Msa0795770:intron | 50.0% | |
| ! | GATACGGAGGATTTTGCTGC+CGG | - | chr5_3:7822777-7822796 | None:intergenic | 50.0% |
| CTCCGTATCCTCAAAGCTCA+CGG | + | chr5_3:7822788-7822807 | Msa0795770:intron | 50.0% | |
| GAGAGATACCGTGAGCTTTG+AGG | - | chr5_3:7822799-7822818 | None:intergenic | 50.0% | |
| TGTAGTATCCCGCTTTGCAC+AGG | - | chr5_3:7822995-7823014 | None:intergenic | 50.0% | |
| TGCAAAGCGGGATACTACAC+AGG | + | chr5_3:7822996-7823015 | Msa0795770:intron | 50.0% | |
| GCAAAGCGGGATACTACACA+GGG | + | chr5_3:7822997-7823016 | Msa0795770:intron | 50.0% | |
| ! | CACAGGGCCTCGAAATTTTG+AGG | + | chr5_3:7823013-7823032 | Msa0795770:intron | 50.0% |
| GCCGAAAACAGCTTACGAAC+AGG | + | chr5_3:7823215-7823234 | Msa0795770:intron | 50.0% | |
| TACAGATCCTCGGGAATCTC+AGG | - | chr5_3:7823519-7823538 | None:intergenic | 50.0% | |
| CAATCCGCAAGCATTTGGAG+AGG | + | chr5_3:7823562-7823581 | Msa0795770:CDS | 50.0% | |
| GGAGAGGAACAGAAAGGACA+AGG | + | chr5_3:7823578-7823597 | Msa0795770:CDS | 50.0% | |
| ! | GGTGGATTCTGCTCTCAACA+AGG | - | chr5_3:7823623-7823642 | None:intergenic | 50.0% |
| TGTAATAGCGAGCAAGACGG+TGG | - | chr5_3:7823641-7823660 | None:intergenic | 50.0% | |
| TCCTAAGTGCAGGTGCTCAT+GGG | - | chr5_3:7824144-7824163 | None:intergenic | 50.0% | |
| TTCCTAAGTGCAGGTGCTCA+TGG | - | chr5_3:7824145-7824164 | None:intergenic | 50.0% | |
| ATGAGCACCTGCACTTAGGA+AGG | + | chr5_3:7824144-7824163 | Msa0795770:intron | 50.0% | |
| TGAAGGAAGATGCACCCAAG+GGG | - | chr5_3:7824248-7824267 | None:intergenic | 50.0% | |
| CATGAAGGAAGATGCACCCA+AGG | - | chr5_3:7824250-7824269 | None:intergenic | 50.0% | |
| ! | ATGTTGCTGTGCAGAAGCAC+GGG | - | chr5_3:7824643-7824662 | None:intergenic | 50.0% |
| CATGTTGCTGTGCAGAAGCA+CGG | - | chr5_3:7824644-7824663 | None:intergenic | 50.0% | |
| ! | GCTCTAAGCAACCAAAGTGC+TGG | - | chr5_3:7824982-7825001 | None:intergenic | 50.0% |
| ACAGCCGAAGCCAGAAACCA+TGG | + | chr5_3:7822396-7822415 | Msa0795770:exon | 55.0% | |
| CAGCCGAAGCCAGAAACCAT+GGG | + | chr5_3:7822397-7822416 | Msa0795770:exon | 55.0% | |
| AGCCGAAGCCAGAAACCATG+GGG | + | chr5_3:7822398-7822417 | Msa0795770:exon | 55.0% | |
| TGCATACGCCCCATGGTTTC+TGG | - | chr5_3:7822409-7822428 | None:intergenic | 55.0% | |
| !! | GCTCAGGTCAAGAGCGTTAC+CGG | + | chr5_3:7822755-7822774 | Msa0795770:intron | 55.0% |
| !! | CGTGAGCTTTGAGGATACGG+AGG | - | chr5_3:7822790-7822809 | None:intergenic | 55.0% |
| GGTGAACAGCCTGTGCAAAG+CGG | + | chr5_3:7822983-7823002 | Msa0795770:intron | 55.0% | |
| GTGAACAGCCTGTGCAAAGC+GGG | + | chr5_3:7822984-7823003 | Msa0795770:intron | 55.0% | |
| ACTTGCACCTGAGATTCCCG+AGG | + | chr5_3:7823509-7823528 | Msa0795770:CDS | 55.0% | |
| ACCCATGAGCACCTGCACTT+AGG | + | chr5_3:7824140-7824159 | Msa0795770:intron | 55.0% | |
| GTGCAGCAACCCTCTGTTAC+CGG | - | chr5_3:7825031-7825050 | None:intergenic | 55.0% | |
| GTAACAGAGGGTTGCTGCAC+TGG | + | chr5_3:7825031-7825050 | Msa0795770:CDS | 55.0% | |
| ! | TGCTGCACTGGCAATCTGCA+AGG | + | chr5_3:7825043-7825062 | Msa0795770:CDS | 55.0% |
| !! | CGCCCCATGGTTTCTGGCTT+CGG | - | chr5_3:7822403-7822422 | None:intergenic | 60.0% |
| CCAGACAGGGGGAAGCTTCT+TGG | - | chr5_3:7823670-7823689 | None:intergenic | 60.0% | |
| CCAAGAAGCTTCCCCCTGTC+TGG | + | chr5_3:7823667-7823686 | Msa0795770:intron | 60.0% | |
| GGAAGATGCACCCAAGGGGA+AGG | - | chr5_3:7824244-7824263 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 7822273 | 7825411 | 7822273 | ID=Msa0795770;Name=Msa0795770 |
| chr5_3 | mRNA | 7822273 | 7825411 | 7822273 | ID=Msa0795770-mRNA-1;Parent=Msa0795770;Name=Msa0795770-mRNA-1;_AED=0.07;_eAED=0.07;_QI=142|0.5|0.6|1|1|1|5|318|155 |
| chr5_3 | exon | 7822273 | 7822437 | 7822273 | ID=Msa0795770-mRNA-1:exon:3222;Parent=Msa0795770-mRNA-1 |
| chr5_3 | exon | 7822520 | 7822592 | 7822520 | ID=Msa0795770-mRNA-1:exon:3223;Parent=Msa0795770-mRNA-1 |
| chr5_3 | exon | 7822671 | 7822737 | 7822671 | ID=Msa0795770-mRNA-1:exon:3224;Parent=Msa0795770-mRNA-1 |
| chr5_3 | exon | 7823508 | 7823683 | 7823508 | ID=Msa0795770-mRNA-1:exon:3225;Parent=Msa0795770-mRNA-1 |
| chr5_3 | exon | 7824965 | 7825411 | 7824965 | ID=Msa0795770-mRNA-1:exon:3226;Parent=Msa0795770-mRNA-1 |
| chr5_3 | five_prime_UTR | 7822273 | 7822414 | 7822273 | ID=Msa0795770-mRNA-1:five_prime_utr;Parent=Msa0795770-mRNA-1 |
| chr5_3 | CDS | 7822415 | 7822437 | 7822415 | ID=Msa0795770-mRNA-1:cds;Parent=Msa0795770-mRNA-1 |
| chr5_3 | CDS | 7822520 | 7822592 | 7822520 | ID=Msa0795770-mRNA-1:cds;Parent=Msa0795770-mRNA-1 |
| chr5_3 | CDS | 7822671 | 7822737 | 7822671 | ID=Msa0795770-mRNA-1:cds;Parent=Msa0795770-mRNA-1 |
| chr5_3 | CDS | 7823508 | 7823683 | 7823508 | ID=Msa0795770-mRNA-1:cds;Parent=Msa0795770-mRNA-1 |
| chr5_3 | CDS | 7824965 | 7825093 | 7824965 | ID=Msa0795770-mRNA-1:cds;Parent=Msa0795770-mRNA-1 |
| chr5_3 | three_prime_UTR | 7825094 | 7825411 | 7825094 | ID=Msa0795770-mRNA-1:three_prime_utr;Parent=Msa0795770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
