Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833550 | RDX90080.1 | 74.375 | 160 | 12 | 1 | 1 | 131 | 27 | 186 | 1.53e-73 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833550 | sp|P62302|RS13_SOYBN | 78.102 | 137 | 6 | 1 | 1 | 113 | 1 | 137 | 6.58e-68 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833550 | A0A371GHU5 | 74.375 | 160 | 12 | 1 | 1 | 131 | 27 | 186 | 7.33e-74 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0795770 | Msa0833550 | 0.942892 | 3.202884e-102 | -8.615850e-47 |
| Msa0828890 | Msa0833550 | 0.913332 | 6.959385e-84 | -8.615850e-47 |
| Msa0168320 | Msa0833550 | 0.801379 | 9.259773e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833550 | MtrunA17_Chr5g0398801 | 81.752 | 137 | 1 | 1 | 1 | 113 | 1 | 137 | 5.50e-72 | 213 |
| Msa0833550 | MtrunA17_Chr4g0011261 | 78.102 | 137 | 6 | 1 | 1 | 113 | 1 | 137 | 1.82e-68 | 204 |
| Msa0833550 | MtrunA17_Chr4g0056921 | 75.912 | 137 | 9 | 1 | 1 | 113 | 1 | 137 | 3.22e-67 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833550 | AT4G00100.1 | 75.912 | 137 | 9 | 1 | 1 | 113 | 1 | 137 | 4.60e-68 | 203 |
| Msa0833550 | AT3G60770.1 | 75.182 | 137 | 10 | 1 | 1 | 113 | 1 | 137 | 3.68e-67 | 201 |
Find 62 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATACGCCCCATGGTTTC+TGG | 0.160395 | 5_4:-6702035 | None:intergenic |
| GGCTCATTCTTCATGCTTTC+CGG | 0.179180 | 5_4:+6704638 | Msa0833550:CDS |
| ACATTTCAGTGTTGCGGTAT+AGG | 0.253624 | 5_4:+6701997 | Msa0833550:five_prime_UTR |
| TTGGTTGCTTAGAGCTTGTA+TGG | 0.287863 | 5_4:+6704616 | Msa0833550:CDS |
| ATGCTTGCTGATCGCTTAGA+AGG | 0.322278 | 5_4:+6704927 | Msa0833550:three_prime_UTR |
| CGCCCCATGGTTTCTGGCTT+CGG | 0.325578 | 5_4:-6702029 | None:intergenic |
| CATTTCAGTGTTGCGGTATA+GGG | 0.330127 | 5_4:+6701998 | Msa0833550:five_prime_UTR |
| CTCTTGCTTGTGTTTGGGTT+GGG | 0.345954 | 5_4:-6701919 | None:intergenic |
| GTGCAGCAACCCTCTGTTAC+CGG | 0.381872 | 5_4:-6704657 | None:intergenic |
| AGAAAATTGACTTGCTCCTC+TGG | 0.385566 | 5_4:-6705017 | None:intergenic |
| TTACAGAAAGGCAATACAAT+AGG | 0.398517 | 5_4:-6704986 | None:intergenic |
| GGTTTCAATCCGCAAGCATT+TGG | 0.402835 | 5_4:+6703186 | Msa0833550:CDS |
| GTAACAGAGGGTTGCTGCAC+TGG | 0.405636 | 5_4:+6704660 | Msa0833550:CDS |
| AGGTTTATCTAGAGACTTGA+TGG | 0.413371 | 5_4:+6704703 | Msa0833550:CDS |
| ACTCTTGCTTGTGTTTGGGT+TGG | 0.418402 | 5_4:-6701920 | None:intergenic |
| TATTTGCAAGTTTGCTAAGA+AGG | 0.425487 | 5_4:+6702311 | Msa0833550:CDS |
| AATTTATCCCTTGATTAACT+AGG | 0.428497 | 5_4:+6701957 | Msa0833550:five_prime_UTR |
| AAACCGCCTTCTTTATCAAA+TGG | 0.432414 | 5_4:-6703168 | None:intergenic |
| AACAAGGATGAGTCTGAACT+TGG | 0.451307 | 5_4:-6703233 | None:intergenic |
| TACAGATCCTCGGGAATCTC+AGG | 0.472902 | 5_4:-6703145 | None:intergenic |
| ATTTATCCCTTGATTAACTA+GGG | 0.478848 | 5_4:+6701958 | Msa0833550:five_prime_UTR |
| ATCAAATGGTACAGATCCTC+GGG | 0.499985 | 5_4:-6703154 | None:intergenic |
| ATACAAACCCTAGTTAATCA+AGG | 0.505909 | 5_4:-6701965 | None:intergenic |
| TGTTCCTCTCCAAATGCTTG+CGG | 0.511208 | 5_4:-6703195 | None:intergenic |
| ATGGGGCGTATGCATAGTAA+AGG | 0.515615 | 5_4:+6702044 | Msa0833550:CDS |
| TATCAAATGGTACAGATCCT+CGG | 0.516683 | 5_4:-6703155 | None:intergenic |
| ATATCTTTCTACTTTATCAA+AGG | 0.517054 | 5_4:-6704754 | None:intergenic |
| ATTTGCAAGTTTGCTAAGAA+GGG | 0.526647 | 5_4:+6702312 | Msa0833550:CDS |
| ATCAACAACTGCCAGCACTT+TGG | 0.526669 | 5_4:+6704597 | Msa0833550:CDS |
| GAAGAGATCTTAAGCCAGCT+AGG | 0.528413 | 5_4:-6702192 | None:intergenic |
| TGCATTTACAAATGAAACAT+AGG | 0.530773 | 5_4:+6704887 | Msa0833550:three_prime_UTR |
| ACAAAAGAACTTCTCCTAGC+TGG | 0.534882 | 5_4:+6702178 | Msa0833550:CDS |
| TAACAAAATAAGAAATTGCA+TGG | 0.540677 | 5_4:-6704727 | None:intergenic |
| TCTGTACCATTTGATAAAGA+AGG | 0.540683 | 5_4:+6703162 | Msa0833550:CDS |
| TGGTTGCTTAGAGCTTGTAT+GGG | 0.548197 | 5_4:+6704617 | Msa0833550:CDS |
| ATACCGCAACACTGAAATGT+TGG | 0.548248 | 5_4:-6701994 | None:intergenic |
| ACAGCCGAAGCCAGAAACCA+TGG | 0.553216 | 5_4:+6702025 | Msa0833550:exon |
| TTACCAACATTTCAGTGTTG+CGG | 0.553262 | 5_4:+6701991 | Msa0833550:five_prime_UTR |
| TGGGGCGTATGCATAGTAAA+GGG | 0.554130 | 5_4:+6702045 | Msa0833550:CDS |
| CAGCCGAAGCCAGAAACCAT+GGG | 0.554217 | 5_4:+6702026 | Msa0833550:exon |
| TGCTGCACTGGCAATCTGCA+AGG | 0.555960 | 5_4:+6704672 | Msa0833550:CDS |
| GCTCTAAGCAACCAAAGTGC+TGG | 0.557410 | 5_4:-6704608 | None:intergenic |
| TCATGCTTTCCGGTAACAGA+GGG | 0.562108 | 5_4:+6704648 | Msa0833550:CDS |
| TGCTTGCTGATCGCTTAGAA+GGG | 0.562937 | 5_4:+6704928 | Msa0833550:three_prime_UTR |
| TTTACTATGCATACGCCCCA+TGG | 0.572915 | 5_4:-6702042 | None:intergenic |
| CTGGAATGCTGATTACAGAA+AGG | 0.578494 | 5_4:-6704998 | None:intergenic |
| GGTTTGACTCCTTCTCAGAT+CGG | 0.582010 | 5_4:+6702333 | Msa0833550:CDS |
| TACAAACCCTAGTTAATCAA+GGG | 0.593495 | 5_4:-6701964 | None:intergenic |
| AGAATAACACCGATCTGAGA+AGG | 0.594247 | 5_4:-6702342 | None:intergenic |
| TTCTGTAATCAGCATTCCAG+AGG | 0.603700 | 5_4:+6705001 | Msa0833550:three_prime_UTR |
| CAATCCGCAAGCATTTGGAG+AGG | 0.603826 | 5_4:+6703191 | Msa0833550:CDS |
| GGTTTATCTAGAGACTTGAT+GGG | 0.612983 | 5_4:+6704704 | Msa0833550:exon |
| GTACCATTTGATAAAGAAGG+CGG | 0.628741 | 5_4:+6703165 | Msa0833550:CDS |
| TGTAATAGCGAGCAAGACGG+TGG | 0.633533 | 5_4:-6703267 | None:intergenic |
| TTCATGCTTTCCGGTAACAG+AGG | 0.633583 | 5_4:+6704647 | Msa0833550:CDS |
| GGTGGATTCTGCTCTCAACA+AGG | 0.636755 | 5_4:-6703249 | None:intergenic |
| GCATTTGGAGAGGAACAGAA+AGG | 0.640840 | 5_4:+6703201 | Msa0833550:CDS |
| GCTTAAGATCTCTTCAGCAG+AGG | 0.666834 | 5_4:+6702200 | Msa0833550:CDS |
| TCTTGTAATAGCGAGCAAGA+CGG | 0.678094 | 5_4:-6703270 | None:intergenic |
| GGAGAGGAACAGAAAGGACA+AGG | 0.687113 | 5_4:+6703207 | Msa0833550:CDS |
| ACTTGCACCTGAGATTCCCG+AGG | 0.712102 | 5_4:+6703138 | Msa0833550:CDS |
| AGCCGAAGCCAGAAACCATG+GGG | 0.712434 | 5_4:+6702027 | Msa0833550:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTATTTATCCAAAA+AGG | - | chr5_4:6702479-6702498 | None:intergenic | 10.0% |
| !! | ATATTAAATAGAAATGTTTA+AGG | + | chr5_4:6702684-6702703 | Msa0833550:intron | 10.0% |
| !! | TATTAAATAGAAATGTTTAA+GGG | + | chr5_4:6702685-6702704 | Msa0833550:intron | 10.0% |
| !!! | AGAATTTCATATTTAAAATT+TGG | - | chr5_4:6702712-6702731 | None:intergenic | 10.0% |
| !!! | TTATATTTTGAATTTGTTTC+AGG | + | chr5_4:6702278-6702297 | Msa0833550:intron | 15.0% |
| !! | ATTTACAAATGATAAAATAG+AGG | + | chr5_4:6702539-6702558 | Msa0833550:intron | 15.0% |
| !!! | TAATATTTTTTTGGAGAATT+CGG | - | chr5_4:6702670-6702689 | None:intergenic | 15.0% |
| !! | TAATGCATTAGTTAAATTTA+TGG | - | chr5_4:6703809-6703828 | None:intergenic | 15.0% |
| !! | TAAATTTAACTAATGCATTA+TGG | + | chr5_4:6703809-6703828 | Msa0833550:intron | 15.0% |
| !! | AAATTTAACTAATGCATTAT+GGG | + | chr5_4:6703810-6703829 | Msa0833550:intron | 15.0% |
| !!! | ATTGAACTTATTTTAAAAAC+AGG | - | chr5_4:6703956-6703975 | None:intergenic | 15.0% |
| !!! | AATATATCCCAATTTTTTGA+GGG | + | chr5_4:6702747-6702766 | Msa0833550:intron | 20.0% |
| !!! | TGCTATCTTAAATATTTTGA+AGG | - | chr5_4:6702791-6702810 | None:intergenic | 20.0% |
| !! | GAAGATTACATATGTATTTA+GGG | - | chr5_4:6702955-6702974 | None:intergenic | 20.0% |
| !! | TGAAGATTACATATGTATTT+AGG | - | chr5_4:6702956-6702975 | None:intergenic | 20.0% |
| !! | AAAAAAAGTAGATAATGTTG+AGG | + | chr5_4:6703059-6703078 | Msa0833550:intron | 20.0% |
| !!! | TCATTGTTTTGTTAATATGA+AGG | + | chr5_4:6703115-6703134 | Msa0833550:intron | 20.0% |
| !! | TTTCTTCCATTTATTTGAAA+GGG | + | chr5_4:6703710-6703729 | Msa0833550:intron | 20.0% |
| !! | ATGAACTCAAAATTAAAACT+TGG | - | chr5_4:6703906-6703925 | None:intergenic | 20.0% |
| !! | TATGCTTATACTTATTTAGT+AGG | - | chr5_4:6704087-6704106 | None:intergenic | 20.0% |
| !! | AATATAATTGGTATATGCAT+GGG | - | chr5_4:6704158-6704177 | None:intergenic | 20.0% |
| !! | AACAGAGTAAACAATATAAT+TGG | - | chr5_4:6704170-6704189 | None:intergenic | 20.0% |
| !! | AGCAATTTATATCAAAGTAA+CGG | - | chr5_4:6704222-6704241 | None:intergenic | 20.0% |
| !! | TAACAAAATAAGAAATTGCA+TGG | - | chr5_4:6704730-6704749 | None:intergenic | 20.0% |
| !! | ATATCTTTCTACTTTATCAA+AGG | - | chr5_4:6704757-6704776 | None:intergenic | 20.0% |
| ! | AATTTATCCCTTGATTAACT+AGG | + | chr5_4:6701957-6701976 | Msa0833550:five_prime_UTR | 25.0% |
| ! | ATTTATCCCTTGATTAACTA+GGG | + | chr5_4:6701958-6701977 | Msa0833550:five_prime_UTR | 25.0% |
| ! | CTCAAAAAATTGGGATATAT+TGG | - | chr5_4:6702748-6702767 | None:intergenic | 25.0% |
| !!! | CAATATATCCCAATTTTTTG+AGG | + | chr5_4:6702746-6702765 | Msa0833550:intron | 25.0% |
| ! | TATTTGTCCCTCAAAAAATT+GGG | - | chr5_4:6702757-6702776 | None:intergenic | 25.0% |
| ! | ATATTTGTCCCTCAAAAAAT+TGG | - | chr5_4:6702758-6702777 | None:intergenic | 25.0% |
| ! | AAATACAAAACAAATGGCAA+AGG | - | chr5_4:6703342-6703361 | None:intergenic | 25.0% |
| ! | GATGGAAAATACAAAACAAA+TGG | - | chr5_4:6703348-6703367 | None:intergenic | 25.0% |
| ! | TGACATAAACAAGGTTAATT+CGG | - | chr5_4:6703405-6703424 | None:intergenic | 25.0% |
| ! | AAAAGGGAAGTAATAATCAA+AGG | + | chr5_4:6703650-6703669 | Msa0833550:intron | 25.0% |
| ! | AAAGGGAAGTAATAATCAAA+GGG | + | chr5_4:6703651-6703670 | Msa0833550:intron | 25.0% |
| ! | AAGTAATAATCAAAGGGTAA+AGG | + | chr5_4:6703657-6703676 | Msa0833550:intron | 25.0% |
| ! | CTTTCTTCCATTTATTTGAA+AGG | + | chr5_4:6703709-6703728 | Msa0833550:intron | 25.0% |
| ! | TTAAAACTTGGAAAACATGA+AGG | - | chr5_4:6703894-6703913 | None:intergenic | 25.0% |
| !!! | TTCGTTCTAAATTTTTACTC+AGG | + | chr5_4:6704115-6704134 | Msa0833550:intron | 25.0% |
| ! | CAATATAATTGGTATATGCA+TGG | - | chr5_4:6704159-6704178 | None:intergenic | 25.0% |
| !! | ATCAATTTTTGTTAATCACC+AGG | + | chr5_4:6704190-6704209 | Msa0833550:intron | 25.0% |
| !! | TCAATTTTTGTTAATCACCA+GGG | + | chr5_4:6704191-6704210 | Msa0833550:intron | 25.0% |
| !! | GCATAATATTGTTTCTCAAT+AGG | + | chr5_4:6704396-6704415 | Msa0833550:intron | 25.0% |
| ! | TTCTCAATAGGCTAATATTA+TGG | + | chr5_4:6704408-6704427 | Msa0833550:intron | 25.0% |
| ! | TGCATTTACAAATGAAACAT+AGG | + | chr5_4:6704887-6704906 | Msa0833550:three_prime_UTR | 25.0% |
| ! | TAGAAGGGAAAAATTTACAT+CGG | + | chr5_4:6704943-6704962 | Msa0833550:three_prime_UTR | 25.0% |
| ! | TTTTACTCTTGCTTGTGTTT+GGG | - | chr5_4:6701927-6701946 | None:intergenic | 30.0% |
| ! | TTTTTACTCTTGCTTGTGTT+TGG | - | chr5_4:6701928-6701947 | None:intergenic | 30.0% |
| TACAAACCCTAGTTAATCAA+GGG | - | chr5_4:6701967-6701986 | None:intergenic | 30.0% | |
| ATACAAACCCTAGTTAATCA+AGG | - | chr5_4:6701968-6701987 | None:intergenic | 30.0% | |
| GAAGAATGTTGAATTGAGAT+TGG | - | chr5_4:6702086-6702105 | None:intergenic | 30.0% | |
| GAGAAGGAATAAAATTGAAG+AGG | - | chr5_4:6702108-6702127 | None:intergenic | 30.0% | |
| !! | CATTGATTTGATTGCAGTAA+GGG | + | chr5_4:6702132-6702151 | Msa0833550:intron | 30.0% |
| !! | TATTTGCAAGTTTGCTAAGA+AGG | + | chr5_4:6702311-6702330 | Msa0833550:CDS | 30.0% |
| !! | ATTTGCAAGTTTGCTAAGAA+GGG | + | chr5_4:6702312-6702331 | Msa0833550:CDS | 30.0% |
| !! | AAGCTGTTTTCACAAGTTAT+CGG | + | chr5_4:6702585-6702604 | Msa0833550:intron | 30.0% |
| AAGCACTTATGAGACTATTT+GGG | - | chr5_4:6702891-6702910 | None:intergenic | 30.0% | |
| TAAGCACTTATGAGACTATT+TGG | - | chr5_4:6702892-6702911 | None:intergenic | 30.0% | |
| !!! | ATTCATTTTTAGTCACCACA+TGG | - | chr5_4:6703017-6703036 | None:intergenic | 30.0% |
| CAATGAATGAATAAACTCAG+CGG | - | chr5_4:6703101-6703120 | None:intergenic | 30.0% | |
| TCTGTACCATTTGATAAAGA+AGG | + | chr5_4:6703162-6703181 | Msa0833550:CDS | 30.0% | |
| AATCTTACTATTTCCAGACA+GGG | - | chr5_4:6703312-6703331 | None:intergenic | 30.0% | |
| AAATCTTACTATTTCCAGAC+AGG | - | chr5_4:6703313-6703332 | None:intergenic | 30.0% | |
| TTGTAGTTGAATCAATTGGA+TGG | - | chr5_4:6703366-6703385 | None:intergenic | 30.0% | |
| GCATTTGTAGTTGAATCAAT+TGG | - | chr5_4:6703370-6703389 | None:intergenic | 30.0% | |
| TTTGGCTAATGACATAAACA+AGG | - | chr5_4:6703414-6703433 | None:intergenic | 30.0% | |
| ! | TTTGGAATGCCTTAAAACTT+TGG | + | chr5_4:6703576-6703595 | Msa0833550:intron | 30.0% |
| TTGGAATGCCTTAAAACTTT+GGG | + | chr5_4:6703577-6703596 | Msa0833550:intron | 30.0% | |
| CCAGTAAAAAAATGGAATCT+AGG | - | chr5_4:6703605-6703624 | None:intergenic | 30.0% | |
| !!! | CCTAGATTCCATTTTTTTAC+TGG | + | chr5_4:6703602-6703621 | Msa0833550:intron | 30.0% |
| !!! | ATTCCATTTTTTTACTGGCA+GGG | + | chr5_4:6703607-6703626 | Msa0833550:intron | 30.0% |
| GAATGACCCTTTCAAATAAA+TGG | - | chr5_4:6703719-6703738 | None:intergenic | 30.0% | |
| TTGAAAGGGTCATTCATATT+TGG | + | chr5_4:6703724-6703743 | Msa0833550:intron | 30.0% | |
| TGAAAGGGTCATTCATATTT+GGG | + | chr5_4:6703725-6703744 | Msa0833550:intron | 30.0% | |
| AATATTATGGTGTGATTGCT+TGG | + | chr5_4:6704421-6704440 | Msa0833550:intron | 30.0% | |
| AGAATTGCAAATTAACAGGA+AGG | - | chr5_4:6704534-6704553 | None:intergenic | 30.0% | |
| TGGTAGAATTGCAAATTAAC+AGG | - | chr5_4:6704538-6704557 | None:intergenic | 30.0% | |
| TTACAGAAAGGCAATACAAT+AGG | - | chr5_4:6704989-6705008 | None:intergenic | 30.0% | |
| TTACCAACATTTCAGTGTTG+CGG | + | chr5_4:6701991-6702010 | Msa0833550:five_prime_UTR | 35.0% | |
| TGTTGAATTGAGATTGGAAG+AGG | - | chr5_4:6702080-6702099 | None:intergenic | 35.0% | |
| ATCAAATCAATGGTGTGAGA+AGG | - | chr5_4:6702124-6702143 | None:intergenic | 35.0% | |
| CCTTACTGCAATCAAATCAA+TGG | - | chr5_4:6702134-6702153 | None:intergenic | 35.0% | |
| !! | CCATTGATTTGATTGCAGTA+AGG | + | chr5_4:6702131-6702150 | Msa0833550:intron | 35.0% |
| ! | AGTTCTTTTGTAGGGTAAAG+CGG | - | chr5_4:6702169-6702188 | None:intergenic | 35.0% |
| ! | CTAGGAGAAGTTCTTTTGTA+GGG | - | chr5_4:6702177-6702196 | None:intergenic | 35.0% |
| GTTATTCTTCGTGATTCTCA+CGG | + | chr5_4:6702357-6702376 | Msa0833550:intron | 35.0% | |
| !! | AGCTGTTTTCACAAGTTATC+GGG | + | chr5_4:6702586-6702605 | Msa0833550:intron | 35.0% |
| TGAGGGACAAATATTAGAAC+AGG | + | chr5_4:6702764-6702783 | Msa0833550:intron | 35.0% | |
| GAGGGACAAATATTAGAACA+GGG | + | chr5_4:6702765-6702784 | Msa0833550:intron | 35.0% | |
| TATCAAATGGTACAGATCCT+CGG | - | chr5_4:6703158-6703177 | None:intergenic | 35.0% | |
| GTACCATTTGATAAAGAAGG+CGG | + | chr5_4:6703165-6703184 | Msa0833550:CDS | 35.0% | |
| AAACCGCCTTCTTTATCAAA+TGG | - | chr5_4:6703171-6703190 | None:intergenic | 35.0% | |
| ATCTTACTATTTCCAGACAG+GGG | - | chr5_4:6703311-6703330 | None:intergenic | 35.0% | |
| TTGATTCAACTACAAATGCC+AGG | + | chr5_4:6703371-6703390 | Msa0833550:intron | 35.0% | |
| CAAAGCTCAATATCGAAGTT+TGG | - | chr5_4:6703432-6703451 | None:intergenic | 35.0% | |
| AACTTCGATATTGAGCTTTG+TGG | + | chr5_4:6703432-6703451 | Msa0833550:intron | 35.0% | |
| TTGAATTCGTTTGCTTGTCT+AGG | + | chr5_4:6703510-6703529 | Msa0833550:intron | 35.0% | |
| TGAATTCGTTTGCTTGTCTA+GGG | + | chr5_4:6703511-6703530 | Msa0833550:intron | 35.0% | |
| TGGAATGCCTTAAAACTTTG+GGG | + | chr5_4:6703578-6703597 | Msa0833550:intron | 35.0% | |
| !!! | GATTCCATTTTTTTACTGGC+AGG | + | chr5_4:6703606-6703625 | Msa0833550:intron | 35.0% |
| TTTCCCTGCCAGTAAAAAAA+TGG | - | chr5_4:6703613-6703632 | None:intergenic | 35.0% | |
| TACGAGGCATGTTTACAAAA+AGG | + | chr5_4:6703633-6703652 | Msa0833550:intron | 35.0% | |
| ACGAGGCATGTTTACAAAAA+GGG | + | chr5_4:6703634-6703653 | Msa0833550:intron | 35.0% | |
| GTTAAACGTTCTATTCAGAG+AGG | - | chr5_4:6703848-6703867 | None:intergenic | 35.0% | |
| AAAGACTTCAATGTCACTCT+TGG | - | chr5_4:6704040-6704059 | None:intergenic | 35.0% | |
| GTAGGATAAAACACATACGA+AGG | - | chr5_4:6704069-6704088 | None:intergenic | 35.0% | |
| CAAAAGTCATTAGTTGCGAT+AGG | - | chr5_4:6704565-6704584 | None:intergenic | 35.0% | |
| AGGTTTATCTAGAGACTTGA+TGG | + | chr5_4:6704703-6704722 | Msa0833550:CDS | 35.0% | |
| GGTTTATCTAGAGACTTGAT+GGG | + | chr5_4:6704704-6704723 | Msa0833550:exon | 35.0% | |
| ATACCGCAACACTGAAATGT+TGG | - | chr5_4:6701997-6702016 | None:intergenic | 40.0% | |
| ACATTTCAGTGTTGCGGTAT+AGG | + | chr5_4:6701997-6702016 | Msa0833550:five_prime_UTR | 40.0% | |
| CATTTCAGTGTTGCGGTATA+GGG | + | chr5_4:6701998-6702017 | Msa0833550:five_prime_UTR | 40.0% | |
| ! | GCTAGGAGAAGTTCTTTTGT+AGG | - | chr5_4:6702178-6702197 | None:intergenic | 40.0% |
| ACAAAAGAACTTCTCCTAGC+TGG | + | chr5_4:6702178-6702197 | Msa0833550:CDS | 40.0% | |
| AGAATAACACCGATCTGAGA+AGG | - | chr5_4:6702345-6702364 | None:intergenic | 40.0% | |
| !! | CTCTCTATGCTGTGTTGTTT+CGG | + | chr5_4:6702443-6702462 | Msa0833550:intron | 40.0% |
| !! | CTGTGTTGTTTCGGTTTGTT+AGG | + | chr5_4:6702452-6702471 | Msa0833550:intron | 40.0% |
| !!! | TCGGTTTGTTAGGTCCTTTT+TGG | + | chr5_4:6702462-6702481 | Msa0833550:intron | 40.0% |
| !! | GCTGTTTTCACAAGTTATCG+GGG | + | chr5_4:6702587-6702606 | Msa0833550:intron | 40.0% |
| TTCGGCACCTCAAAATTTCA+AGG | - | chr5_4:6702652-6702671 | None:intergenic | 40.0% | |
| !! | ACCTGTTCGTAAGCTGTTTT+CGG | - | chr5_4:6702848-6702867 | None:intergenic | 40.0% |
| CCACATGGACACAAATTCAT+AGG | - | chr5_4:6703002-6703021 | None:intergenic | 40.0% | |
| CCTATGAATTTGTGTCCATG+TGG | + | chr5_4:6702999-6703018 | Msa0833550:intron | 40.0% | |
| ATCAAATGGTACAGATCCTC+GGG | - | chr5_4:6703157-6703176 | None:intergenic | 40.0% | |
| AACAAGGATGAGTCTGAACT+TGG | - | chr5_4:6703236-6703255 | None:intergenic | 40.0% | |
| TCTTGTAATAGCGAGCAAGA+CGG | - | chr5_4:6703273-6703292 | None:intergenic | 40.0% | |
| TCTTACTATTTCCAGACAGG+GGG | - | chr5_4:6703310-6703329 | None:intergenic | 40.0% | |
| ! | TTCGATATTGAGCTTTGTGG+TGG | + | chr5_4:6703435-6703454 | Msa0833550:intron | 40.0% |
| GTGGTATGCATTAGATCGAT+CGG | + | chr5_4:6703454-6703473 | Msa0833550:intron | 40.0% | |
| GAATTCGTTTGCTTGTCTAG+GGG | + | chr5_4:6703512-6703531 | Msa0833550:intron | 40.0% | |
| ! | TCTAGGTCCCCAAAGTTTTA+AGG | - | chr5_4:6703588-6703607 | None:intergenic | 40.0% |
| TGGGTCCTAGTGAACTTTAT+GGG | - | chr5_4:6703754-6703773 | None:intergenic | 40.0% | |
| ATGGGTCCTAGTGAACTTTA+TGG | - | chr5_4:6703755-6703774 | None:intergenic | 40.0% | |
| AATAAGTTCAATTGCGTGCC+TGG | + | chr5_4:6703964-6703983 | Msa0833550:intron | 40.0% | |
| CTGGTTGACTAGATGAAAAG+CGG | + | chr5_4:6703983-6704002 | Msa0833550:intron | 40.0% | |
| TCAAAGTAACGGTAAAACCC+TGG | - | chr5_4:6704211-6704230 | None:intergenic | 40.0% | |
| GCACAGCAACATGAATGAAA+TGG | + | chr5_4:6704280-6704299 | Msa0833550:intron | 40.0% | |
| GCAAGACTAGAAAGTTCAAG+AGG | - | chr5_4:6704512-6704531 | None:intergenic | 40.0% | |
| CATTAGTTGCGATAGGAACA+TGG | - | chr5_4:6704558-6704577 | None:intergenic | 40.0% | |
| TTGGTTGCTTAGAGCTTGTA+TGG | + | chr5_4:6704616-6704635 | Msa0833550:CDS | 40.0% | |
| TGGTTGCTTAGAGCTTGTAT+GGG | + | chr5_4:6704617-6704636 | Msa0833550:CDS | 40.0% | |
| !! | CAATCTGCAAGGTCATTTTG+AGG | + | chr5_4:6704683-6704702 | Msa0833550:CDS | 40.0% |
| ! | CTGGAATGCTGATTACAGAA+AGG | - | chr5_4:6705001-6705020 | None:intergenic | 40.0% |
| TTCTGTAATCAGCATTCCAG+AGG | + | chr5_4:6705001-6705020 | Msa0833550:three_prime_UTR | 40.0% | |
| !! | AGAAAATTGACTTGCTCCTC+TGG | - | chr5_4:6705020-6705039 | None:intergenic | 40.0% |
| ! | CTCTTGCTTGTGTTTGGGTT+GGG | - | chr5_4:6701922-6701941 | None:intergenic | 45.0% |
| ACTCTTGCTTGTGTTTGGGT+TGG | - | chr5_4:6701923-6701942 | None:intergenic | 45.0% | |
| TTTACTATGCATACGCCCCA+TGG | - | chr5_4:6702045-6702064 | None:intergenic | 45.0% | |
| ATGGGGCGTATGCATAGTAA+AGG | + | chr5_4:6702044-6702063 | Msa0833550:CDS | 45.0% | |
| TGGGGCGTATGCATAGTAAA+GGG | + | chr5_4:6702045-6702064 | Msa0833550:CDS | 45.0% | |
| ! | TCTTTTGTAGGGTAAAGCGG+AGG | - | chr5_4:6702166-6702185 | None:intergenic | 45.0% |
| GAAGAGATCTTAAGCCAGCT+AGG | - | chr5_4:6702195-6702214 | None:intergenic | 45.0% | |
| GCTTAAGATCTCTTCAGCAG+AGG | + | chr5_4:6702200-6702219 | Msa0833550:CDS | 45.0% | |
| GGTTTGACTCCTTCTCAGAT+CGG | + | chr5_4:6702333-6702352 | Msa0833550:CDS | 45.0% | |
| !! | TACCGTGAGCTTTGAGGATA+CGG | - | chr5_4:6702422-6702441 | None:intergenic | 45.0% |
| ! | TTTTCACAAGTTATCGGGGC+TGG | + | chr5_4:6702591-6702610 | Msa0833550:intron | 45.0% |
| ! | CACAGGGCCTTGAAATTTTG+AGG | + | chr5_4:6702642-6702661 | Msa0833550:intron | 45.0% |
| GATAGCATTGCAAGTTACGC+TGG | + | chr5_4:6702804-6702823 | Msa0833550:intron | 45.0% | |
| GGTTTCAATCCGCAAGCATT+TGG | + | chr5_4:6703186-6703205 | Msa0833550:CDS | 45.0% | |
| TGTTCCTCTCCAAATGCTTG+CGG | - | chr5_4:6703198-6703217 | None:intergenic | 45.0% | |
| GCATTTGGAGAGGAACAGAA+AGG | + | chr5_4:6703201-6703220 | Msa0833550:CDS | 45.0% | |
| ! | GTTAATTCGGTGACTAAGCC+TGG | - | chr5_4:6703392-6703411 | None:intergenic | 45.0% |
| TTTACTGGCAGGGAAATACG+AGG | + | chr5_4:6703617-6703636 | Msa0833550:intron | 45.0% | |
| GGCATCCCATAAAGTTCACT+AGG | + | chr5_4:6703746-6703765 | Msa0833550:intron | 45.0% | |
| ACAAGATCCTTCCTAAGTGC+AGG | - | chr5_4:6703783-6703802 | None:intergenic | 45.0% | |
| ACGTTTAACATCCTTCCCCT+TGG | + | chr5_4:6703859-6703878 | Msa0833550:intron | 45.0% | |
| CGTTTAACATCCTTCCCCTT+GGG | + | chr5_4:6703860-6703879 | Msa0833550:intron | 45.0% | |
| ATGAAGGAAGATGCACCCAA+GGG | - | chr5_4:6703878-6703897 | None:intergenic | 45.0% | |
| GACTAGAGCTGAAGATGACA+CGG | - | chr5_4:6703930-6703949 | None:intergenic | 45.0% | |
| ! | CGCTTTTCATCTAGTCAACC+AGG | - | chr5_4:6703985-6704004 | None:intergenic | 45.0% |
| ATCAACAACTGCCAGCACTT+TGG | + | chr5_4:6704597-6704616 | Msa0833550:CDS | 45.0% | |
| GGCTCATTCTTCATGCTTTC+CGG | + | chr5_4:6704638-6704657 | Msa0833550:CDS | 45.0% | |
| TTCATGCTTTCCGGTAACAG+AGG | + | chr5_4:6704647-6704666 | Msa0833550:CDS | 45.0% | |
| TCATGCTTTCCGGTAACAGA+GGG | + | chr5_4:6704648-6704667 | Msa0833550:CDS | 45.0% | |
| ! | ATGCTTGCTGATCGCTTAGA+AGG | + | chr5_4:6704927-6704946 | Msa0833550:three_prime_UTR | 45.0% |
| ! | TGCTTGCTGATCGCTTAGAA+GGG | + | chr5_4:6704928-6704947 | Msa0833550:three_prime_UTR | 45.0% |
| !!! | ATTTCTATTTAATATTTTTT+TGG | - | chr5_4:6702679-6702698 | None:intergenic | 5.0% |
| !!! | ATTAAAAATTAATTAAGTTT+TGG | + | chr5_4:6703558-6703577 | Msa0833550:intron | 5.0% |
| TGATTCTCACGGCATTGCTC+AGG | + | chr5_4:6702368-6702387 | Msa0833550:intron | 50.0% | |
| ! | GATACGGAGGATTTTGCTGC+CGG | - | chr5_4:6702406-6702425 | None:intergenic | 50.0% |
| CTCCGTATCCTCAAAGCTCA+CGG | + | chr5_4:6702417-6702436 | Msa0833550:intron | 50.0% | |
| GAGAGATACCGTGAGCTTTG+AGG | - | chr5_4:6702428-6702447 | None:intergenic | 50.0% | |
| TGTAGTATCCCGCTTTGCAC+AGG | - | chr5_4:6702624-6702643 | None:intergenic | 50.0% | |
| TGCAAAGCGGGATACTACAC+AGG | + | chr5_4:6702625-6702644 | Msa0833550:intron | 50.0% | |
| GCAAAGCGGGATACTACACA+GGG | + | chr5_4:6702626-6702645 | Msa0833550:intron | 50.0% | |
| GCCGAAAACAGCTTACGAAC+AGG | + | chr5_4:6702844-6702863 | Msa0833550:intron | 50.0% | |
| TACAGATCCTCGGGAATCTC+AGG | - | chr5_4:6703148-6703167 | None:intergenic | 50.0% | |
| CAATCCGCAAGCATTTGGAG+AGG | + | chr5_4:6703191-6703210 | Msa0833550:CDS | 50.0% | |
| GGAGAGGAACAGAAAGGACA+AGG | + | chr5_4:6703207-6703226 | Msa0833550:CDS | 50.0% | |
| ! | GGTGGATTCTGCTCTCAACA+AGG | - | chr5_4:6703252-6703271 | None:intergenic | 50.0% |
| TGTAATAGCGAGCAAGACGG+TGG | - | chr5_4:6703270-6703289 | None:intergenic | 50.0% | |
| TCCTAAGTGCAGGTGCTCAT+GGG | - | chr5_4:6703773-6703792 | None:intergenic | 50.0% | |
| TTCCTAAGTGCAGGTGCTCA+TGG | - | chr5_4:6703774-6703793 | None:intergenic | 50.0% | |
| ATGAGCACCTGCACTTAGGA+AGG | + | chr5_4:6703773-6703792 | Msa0833550:intron | 50.0% | |
| TGAAGGAAGATGCACCCAAG+GGG | - | chr5_4:6703877-6703896 | None:intergenic | 50.0% | |
| CATGAAGGAAGATGCACCCA+AGG | - | chr5_4:6703879-6703898 | None:intergenic | 50.0% | |
| ! | ATGTTGCTGTGCAGAAGCAC+GGG | - | chr5_4:6704272-6704291 | None:intergenic | 50.0% |
| CATGTTGCTGTGCAGAAGCA+CGG | - | chr5_4:6704273-6704292 | None:intergenic | 50.0% | |
| ! | GCTCTAAGCAACCAAAGTGC+TGG | - | chr5_4:6704611-6704630 | None:intergenic | 50.0% |
| ACAGCCGAAGCCAGAAACCA+TGG | + | chr5_4:6702025-6702044 | Msa0833550:exon | 55.0% | |
| CAGCCGAAGCCAGAAACCAT+GGG | + | chr5_4:6702026-6702045 | Msa0833550:exon | 55.0% | |
| AGCCGAAGCCAGAAACCATG+GGG | + | chr5_4:6702027-6702046 | Msa0833550:exon | 55.0% | |
| TGCATACGCCCCATGGTTTC+TGG | - | chr5_4:6702038-6702057 | None:intergenic | 55.0% | |
| !! | GCTCAGGTCAAGAGCGTTAC+CGG | + | chr5_4:6702384-6702403 | Msa0833550:intron | 55.0% |
| !! | CGTGAGCTTTGAGGATACGG+AGG | - | chr5_4:6702419-6702438 | None:intergenic | 55.0% |
| GGTGAACAGCCTGTGCAAAG+CGG | + | chr5_4:6702612-6702631 | Msa0833550:intron | 55.0% | |
| GTGAACAGCCTGTGCAAAGC+GGG | + | chr5_4:6702613-6702632 | Msa0833550:intron | 55.0% | |
| ACTTGCACCTGAGATTCCCG+AGG | + | chr5_4:6703138-6703157 | Msa0833550:CDS | 55.0% | |
| ACCCATGAGCACCTGCACTT+AGG | + | chr5_4:6703769-6703788 | Msa0833550:intron | 55.0% | |
| GTGCAGCAACCCTCTGTTAC+CGG | - | chr5_4:6704660-6704679 | None:intergenic | 55.0% | |
| GTAACAGAGGGTTGCTGCAC+TGG | + | chr5_4:6704660-6704679 | Msa0833550:CDS | 55.0% | |
| ! | TGCTGCACTGGCAATCTGCA+AGG | + | chr5_4:6704672-6704691 | Msa0833550:CDS | 55.0% |
| !! | CGCCCCATGGTTTCTGGCTT+CGG | - | chr5_4:6702032-6702051 | None:intergenic | 60.0% |
| CCAGACAGGGGGAAGCTTCT+TGG | - | chr5_4:6703299-6703318 | None:intergenic | 60.0% | |
| CCAAGAAGCTTCCCCCTGTC+TGG | + | chr5_4:6703296-6703315 | Msa0833550:intron | 60.0% | |
| GGAAGATGCACCCAAGGGGA+AGG | - | chr5_4:6703873-6703892 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 6701902 | 6705040 | 6701902 | ID=Msa0833550;Name=Msa0833550 |
| chr5_4 | mRNA | 6701902 | 6705040 | 6701902 | ID=Msa0833550-mRNA-1;Parent=Msa0833550;Name=Msa0833550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=142|0.5|0.6|1|1|1|5|318|155 |
| chr5_4 | exon | 6701902 | 6702066 | 6701902 | ID=Msa0833550-mRNA-1:exon:2955;Parent=Msa0833550-mRNA-1 |
| chr5_4 | exon | 6702149 | 6702221 | 6702149 | ID=Msa0833550-mRNA-1:exon:2956;Parent=Msa0833550-mRNA-1 |
| chr5_4 | exon | 6702300 | 6702366 | 6702300 | ID=Msa0833550-mRNA-1:exon:2957;Parent=Msa0833550-mRNA-1 |
| chr5_4 | exon | 6703137 | 6703312 | 6703137 | ID=Msa0833550-mRNA-1:exon:2958;Parent=Msa0833550-mRNA-1 |
| chr5_4 | exon | 6704594 | 6705040 | 6704594 | ID=Msa0833550-mRNA-1:exon:2959;Parent=Msa0833550-mRNA-1 |
| chr5_4 | five_prime_UTR | 6701902 | 6702043 | 6701902 | ID=Msa0833550-mRNA-1:five_prime_utr;Parent=Msa0833550-mRNA-1 |
| chr5_4 | CDS | 6702044 | 6702066 | 6702044 | ID=Msa0833550-mRNA-1:cds;Parent=Msa0833550-mRNA-1 |
| chr5_4 | CDS | 6702149 | 6702221 | 6702149 | ID=Msa0833550-mRNA-1:cds;Parent=Msa0833550-mRNA-1 |
| chr5_4 | CDS | 6702300 | 6702366 | 6702300 | ID=Msa0833550-mRNA-1:cds;Parent=Msa0833550-mRNA-1 |
| chr5_4 | CDS | 6703137 | 6703312 | 6703137 | ID=Msa0833550-mRNA-1:cds;Parent=Msa0833550-mRNA-1 |
| chr5_4 | CDS | 6704594 | 6704722 | 6704594 | ID=Msa0833550-mRNA-1:cds;Parent=Msa0833550-mRNA-1 |
| chr5_4 | three_prime_UTR | 6704723 | 6705040 | 6704723 | ID=Msa0833550-mRNA-1:three_prime_utr;Parent=Msa0833550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
