Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795950 | XP_003611278.1 | 97.312 | 186 | 5 | 0 | 1 | 186 | 1 | 186 | 9.62e-128 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795950 | sp|Q9SUW2|APT3_ARATH | 83.425 | 181 | 30 | 0 | 3 | 183 | 2 | 182 | 1.17e-105 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795950 | G7JW03 | 97.312 | 186 | 5 | 0 | 1 | 186 | 1 | 186 | 4.60e-128 | 367 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0754220 | Msa0795950 | 0.919429 | 4.553923e-87 | -8.615850e-47 |
| Msa0267330 | Msa0795950 | 0.918080 | 2.421385e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795950 | MtrunA17_Chr5g0399031 | 97.312 | 186 | 5 | 0 | 1 | 186 | 1 | 186 | 8.85e-132 | 367 |
| Msa0795950 | MtrunA17_Chr4g0056471 | 89.189 | 185 | 18 | 1 | 1 | 185 | 1 | 183 | 4.86e-116 | 327 |
| Msa0795950 | MtrunA17_Chr3g0134721 | 78.531 | 177 | 38 | 0 | 6 | 182 | 66 | 242 | 8.83e-101 | 290 |
| Msa0795950 | MtrunA17_Chr3g0137551 | 73.988 | 173 | 45 | 0 | 10 | 182 | 11 | 183 | 4.04e-90 | 261 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795950 | AT4G22570.1 | 83.425 | 181 | 30 | 0 | 3 | 183 | 2 | 182 | 1.19e-106 | 303 |
| Msa0795950 | AT4G12440.3 | 84.270 | 178 | 28 | 0 | 6 | 183 | 4 | 181 | 7.00e-106 | 301 |
| Msa0795950 | AT4G12440.2 | 84.270 | 178 | 28 | 0 | 6 | 183 | 4 | 181 | 7.00e-106 | 301 |
| Msa0795950 | AT1G27450.2 | 77.586 | 174 | 39 | 0 | 9 | 182 | 7 | 180 | 4.49e-96 | 276 |
| Msa0795950 | AT1G27450.4 | 77.586 | 174 | 39 | 0 | 9 | 182 | 7 | 180 | 4.49e-96 | 276 |
| Msa0795950 | AT1G27450.1 | 77.586 | 174 | 39 | 0 | 9 | 182 | 67 | 240 | 8.20e-96 | 278 |
| Msa0795950 | AT5G11160.1 | 77.457 | 173 | 39 | 0 | 10 | 182 | 11 | 183 | 1.46e-92 | 268 |
| Msa0795950 | AT1G80050.1 | 74.566 | 173 | 44 | 0 | 10 | 182 | 11 | 183 | 3.21e-92 | 267 |
| Msa0795950 | AT1G27450.3 | 67.839 | 199 | 39 | 1 | 9 | 182 | 83 | 281 | 1.80e-89 | 263 |
| Msa0795950 | AT1G80050.2 | 76.159 | 151 | 36 | 0 | 32 | 182 | 1 | 151 | 4.76e-81 | 238 |
| Msa0795950 | AT5G11160.2 | 77.536 | 138 | 31 | 0 | 10 | 147 | 11 | 148 | 2.53e-72 | 216 |
| Msa0795950 | AT4G22570.2 | 82.178 | 101 | 18 | 0 | 6 | 106 | 5 | 105 | 5.43e-55 | 170 |
| Msa0795950 | AT4G12440.1 | 88.172 | 93 | 11 | 0 | 6 | 98 | 4 | 96 | 2.13e-53 | 166 |
| Msa0795950 | AT4G12440.4 | 88.172 | 93 | 11 | 0 | 6 | 98 | 4 | 96 | 2.13e-53 | 166 |
Find 75 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCAGCTTTAGGGAAATT+AGG | 0.183357 | 5_3:-7963530 | None:intergenic |
| GCATTATTTACTATATTATA+TGG | 0.235159 | 5_3:+7968315 | Msa0795950:three_prime_UTR |
| CAAGAATATATTCTGGAATA+TGG | 0.262836 | 5_3:+7966849 | Msa0795950:CDS |
| ATACAATCAAATTATGGATT+TGG | 0.266097 | 5_3:+7968059 | Msa0795950:three_prime_UTR |
| TGTCCCATACAATCAAATTA+TGG | 0.269287 | 5_3:+7968053 | Msa0795950:three_prime_UTR |
| AAACAGAACAAACCAGCTTT+AGG | 0.286654 | 5_3:-7963539 | None:intergenic |
| AGTATACCAGGCAACTTCTT+TGG | 0.298599 | 5_3:-7965908 | None:intergenic |
| AATCGTGTCCTTAAAAGCTT+TGG | 0.304890 | 5_3:-7963753 | None:intergenic |
| TTTATAAGCCACCTCTAGTC+TGG | 0.325716 | 5_3:-7968259 | None:intergenic |
| TACAATCAAATTATGGATTT+GGG | 0.330287 | 5_3:+7968060 | Msa0795950:three_prime_UTR |
| CATACTACAAGCTAATTAGA+TGG | 0.343120 | 5_3:-7968119 | None:intergenic |
| ATATGAGCTGCTCGTGAATA+TGG | 0.346111 | 5_3:+7968028 | Msa0795950:exon |
| AAATCCATAATTTGATTGTA+TGG | 0.354557 | 5_3:-7968057 | None:intergenic |
| AACCAGCTTTAGGGAAATTA+GGG | 0.373142 | 5_3:-7963529 | None:intergenic |
| GCTCCTATTGCTAGGGCAAT+GGG | 0.388468 | 5_3:-7965863 | None:intergenic |
| AATTTGTATGACCCACCCTT+TGG | 0.390878 | 5_3:+7968163 | Msa0795950:three_prime_UTR |
| AGACATAACAACTTTGTTGC+TGG | 0.393391 | 5_3:+7963727 | Msa0795950:CDS |
| CGGGGATCCTGGTTATGGTT+AGG | 0.395044 | 5_3:-7963473 | None:intergenic |
| CCTCCCATTGCCCTAGCAAT+AGG | 0.399883 | 5_3:+7965860 | Msa0795950:CDS |
| TGAGTACAGAGAAGAGGAAG+AGG | 0.400474 | 5_3:-7963419 | None:intergenic |
| AACAGAACAAACCAGCTTTA+GGG | 0.408090 | 5_3:-7963538 | None:intergenic |
| AATACACATACCTTCAGTTC+TGG | 0.411464 | 5_3:-7967636 | None:intergenic |
| GTTGATGATTTGATTGCAAC+TGG | 0.419866 | 5_3:+7966930 | Msa0795950:CDS |
| ATCGTGTCCTTAAAAGCTTT+GGG | 0.421866 | 5_3:-7963752 | None:intergenic |
| TATATCTCAAGAATATATTC+TGG | 0.424805 | 5_3:+7966842 | Msa0795950:CDS |
| ATTTGTATGACCCACCCTTT+GGG | 0.430577 | 5_3:+7968164 | Msa0795950:three_prime_UTR |
| GCAACAAAGTTGTTATGTCT+TGG | 0.434670 | 5_3:-7963724 | None:intergenic |
| GGAGACGGGGATCCTGGTTA+TGG | 0.440718 | 5_3:-7963478 | None:intergenic |
| CAGGGTCGTGAACGTTTGAA+TGG | 0.446474 | 5_3:+7967971 | Msa0795950:intron |
| GTCCCTAATTTCCCTAAAGC+TGG | 0.449348 | 5_3:+7963527 | Msa0795950:CDS |
| GGAGCTTAATTTAGTGAAGA+AGG | 0.449747 | 5_3:+7968290 | Msa0795950:three_prime_UTR |
| TGCTCCTATTGCTAGGGCAA+TGG | 0.450009 | 5_3:-7965864 | None:intergenic |
| GGAATATGGAAGGGATTGTC+TGG | 0.452778 | 5_3:+7966863 | Msa0795950:CDS |
| ATTTGGGAGATGTCATTTAG+TGG | 0.454410 | 5_3:+7968076 | Msa0795950:three_prime_UTR |
| TGCCATGGAGACGGGGATCC+TGG | 0.460160 | 5_3:-7963484 | None:intergenic |
| ACGTGTGGGAGCAGAGGTAG+TGG | 0.480614 | 5_3:+7967590 | Msa0795950:CDS |
| CAAACTTTGCTCCTATTGCT+AGG | 0.482941 | 5_3:-7965871 | None:intergenic |
| GTGAGTTGAGTACAGAGAAG+AGG | 0.493402 | 5_3:-7963425 | None:intergenic |
| TGGAACGCTCGGTGCAGCTA+TGG | 0.495730 | 5_3:+7966953 | Msa0795950:CDS |
| AATCCATAATTTGATTGTAT+GGG | 0.503655 | 5_3:-7968056 | None:intergenic |
| TTTGTTTGTTGAGCGTTACA+AGG | 0.505554 | 5_3:+7963778 | Msa0795950:CDS |
| GGGGATCCTGGTTATGGTTA+GGG | 0.510107 | 5_3:-7963472 | None:intergenic |
| GAGGAAGAGGAGAAAGAAAG+TGG | 0.513273 | 5_3:-7963406 | None:intergenic |
| AACTTCTTTGGTTTCCTCAA+CGG | 0.516612 | 5_3:-7965896 | None:intergenic |
| AGGAAACCAAAGAAGTTGCC+TGG | 0.536887 | 5_3:+7965902 | Msa0795950:CDS |
| CATGTTGGAGCTGTTGAAGC+TGG | 0.538546 | 5_3:+7966891 | Msa0795950:CDS |
| AATATATTCTGGAATATGGA+AGG | 0.538905 | 5_3:+7966853 | Msa0795950:CDS |
| GGTGCAGCTATGGATTTACT+TGG | 0.542272 | 5_3:+7966963 | Msa0795950:CDS |
| AACCAGGATCCCCGTCTCCA+TGG | 0.548404 | 5_3:+7963482 | Msa0795950:CDS |
| ATTGCAACTGGTGGAACGCT+CGG | 0.559268 | 5_3:+7966942 | Msa0795950:CDS |
| AGGGTCGTGAACGTTTGAAT+GGG | 0.559366 | 5_3:+7967972 | Msa0795950:intron |
| AAACTTTGCTCCTATTGCTA+GGG | 0.561475 | 5_3:-7965870 | None:intergenic |
| GAAGCCGTTGTACGTGTTGG+TGG | 0.568047 | 5_3:+7967994 | Msa0795950:CDS |
| ATACTACAAGCTAATTAGAT+GGG | 0.571753 | 5_3:-7968118 | None:intergenic |
| ATGAGACGAGAGAGACCCAA+AGG | 0.574212 | 5_3:-7968179 | None:intergenic |
| TTATAAGCCACCTCTAGTCT+GGG | 0.578321 | 5_3:-7968258 | None:intergenic |
| AACTGGGCCCAGACTAGAGG+TGG | 0.593639 | 5_3:+7968251 | Msa0795950:three_prime_UTR |
| TTATTTACTATATTATATGG+TGG | 0.594062 | 5_3:+7968318 | Msa0795950:three_prime_UTR |
| GACGAGAGAGACCCAAAGGG+TGG | 0.599552 | 5_3:-7968175 | None:intergenic |
| GAAAACTGGGCCCAGACTAG+AGG | 0.599698 | 5_3:+7968248 | Msa0795950:three_prime_UTR |
| GAGCAAAGTTTGTACCGTTG+AGG | 0.600941 | 5_3:+7965882 | Msa0795950:CDS |
| TTGTTTGTTGAGCGTTACAA+GGG | 0.607295 | 5_3:+7963779 | Msa0795950:CDS |
| ATATATTCTGGAATATGGAA+GGG | 0.616454 | 5_3:+7966854 | Msa0795950:CDS |
| AATTGAATTACCAGAACTGA+AGG | 0.617672 | 5_3:+7967626 | Msa0795950:CDS |
| TCTTTAGGAATCGAAGCTCG+AGG | 0.622592 | 5_3:+7965824 | Msa0795950:intron |
| GATGATTTGATTGCAACTGG+TGG | 0.623926 | 5_3:+7966933 | Msa0795950:CDS |
| GATTGTCTGGAGATGCATGT+TGG | 0.625993 | 5_3:+7966876 | Msa0795950:CDS |
| TTTAGAACGTGTGGGAGCAG+AGG | 0.626121 | 5_3:+7967584 | Msa0795950:intron |
| TGAGACGAGAGAGACCCAAA+GGG | 0.626189 | 5_3:-7968178 | None:intergenic |
| TGGGAAGCCGTTGTACGTGT+TGG | 0.631023 | 5_3:+7967991 | Msa0795950:CDS |
| TATTCCACCAACACGTACAA+CGG | 0.631070 | 5_3:-7967998 | None:intergenic |
| ACGAGAGAGACCCAAAGGGT+GGG | 0.632924 | 5_3:-7968174 | None:intergenic |
| AGCTGGTGAACGTGCTATTG+TGG | 0.633448 | 5_3:+7966908 | Msa0795950:CDS |
| GTCTTACCCTAACCATAACC+AGG | 0.656381 | 5_3:+7963466 | Msa0795950:CDS |
| CCTATTGCTAGGGCAATGGG+AGG | 0.682237 | 5_3:-7965860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATATGAATCAAA+GGG | - | chr5_3:7963603-7963622 | None:intergenic | 10.0% |
| !! | AAAAATAAAATATGAATCAA+AGG | - | chr5_3:7963604-7963623 | None:intergenic | 10.0% |
| !!! | ATATTTTTTAACTGAAAAAA+TGG | + | chr5_3:7963842-7963861 | Msa0795950:intron | 10.0% |
| !!! | TTTTATTTTGCATATATTTT+TGG | - | chr5_3:7964013-7964032 | None:intergenic | 10.0% |
| !!! | AATTATAATATAATAATGGA+GGG | - | chr5_3:7964452-7964471 | None:intergenic | 10.0% |
| !! | AAATTATAATATAATAATGG+AGG | - | chr5_3:7964453-7964472 | None:intergenic | 10.0% |
| !! | CACAAATTATAATATAATAA+TGG | - | chr5_3:7964456-7964475 | None:intergenic | 10.0% |
| !! | CATTATTATATTATAATTTG+TGG | + | chr5_3:7964454-7964473 | Msa0795950:intron | 10.0% |
| !!! | TAAATTTTATTAGAAAAATG+GGG | - | chr5_3:7968213-7968232 | None:intergenic | 10.0% |
| !!! | CATAAATTTTATTAGAAAAA+TGG | - | chr5_3:7968215-7968234 | None:intergenic | 10.0% |
| !! | AAATAAAATATGAATCAAAG+GGG | - | chr5_3:7963602-7963621 | None:intergenic | 15.0% |
| !!! | ATTATAATATAATAATGGAG+GGG | - | chr5_3:7964451-7964470 | None:intergenic | 15.0% |
| !! | ATTTAATTGTTTATCAAATC+AGG | + | chr5_3:7965357-7965376 | Msa0795950:intron | 15.0% |
| !! | TTTCCATTGAAATATATAAA+TGG | - | chr5_3:7965584-7965603 | None:intergenic | 15.0% |
| !!! | ATTACGTATAAATAATTTGT+AGG | - | chr5_3:7966410-7966429 | None:intergenic | 15.0% |
| !!! | TAAAACAATTCATATGATTT+TGG | - | chr5_3:7966497-7966516 | None:intergenic | 15.0% |
| !! | TTTGTTACTATAAAGAAAAT+GGG | - | chr5_3:7966801-7966820 | None:intergenic | 15.0% |
| !!! | TTTTGTTACTATAAAGAAAA+TGG | - | chr5_3:7966802-7966821 | None:intergenic | 15.0% |
| !! | TTATTAAAAGTTTCTCAATT+AGG | - | chr5_3:7967201-7967220 | None:intergenic | 15.0% |
| !! | TTAAAAACTGCATTTAAATT+TGG | - | chr5_3:7967356-7967375 | None:intergenic | 15.0% |
| !! | AAAAGACATCAATATAATAA+AGG | - | chr5_3:7967566-7967585 | None:intergenic | 15.0% |
| !!! | AAATTTTATTAGAAAAATGG+GGG | - | chr5_3:7968212-7968231 | None:intergenic | 15.0% |
| !! | GCATTATTTACTATATTATA+TGG | + | chr5_3:7968315-7968334 | Msa0795950:three_prime_UTR | 15.0% |
| !! | TTATTTACTATATTATATGG+TGG | + | chr5_3:7968318-7968337 | Msa0795950:three_prime_UTR | 15.0% |
| !!! | AAGCTTTATTTTTTGTTTTG+AGG | + | chr5_3:7963633-7963652 | Msa0795950:intron | 20.0% |
| !!! | TTATTTATTTTGTTTGAACG+TGG | + | chr5_3:7963884-7963903 | Msa0795950:intron | 20.0% |
| !!! | TATTTATTTTGTTTGAACGT+GGG | + | chr5_3:7963885-7963904 | Msa0795950:intron | 20.0% |
| !! | AAAAGAGATTCAAATAAACA+CGG | - | chr5_3:7965001-7965020 | None:intergenic | 20.0% |
| !! | GTACCATTTATATATTTCAA+TGG | + | chr5_3:7965578-7965597 | Msa0795950:intron | 20.0% |
| !! | GTAGAACATTTAAACTTAAT+TGG | - | chr5_3:7966034-7966053 | None:intergenic | 20.0% |
| !!! | ATAACTTTTGTTCAAAATTC+AGG | - | chr5_3:7966468-7966487 | None:intergenic | 20.0% |
| !! | TTGTTCAGAAACTAATTTAA+CGG | + | chr5_3:7966546-7966565 | Msa0795950:intron | 20.0% |
| !! | TTATTTGTTTATCAGTTATG+TGG | + | chr5_3:7966650-7966669 | Msa0795950:intron | 20.0% |
| !! | TATATCTCAAGAATATATTC+TGG | + | chr5_3:7966842-7966861 | Msa0795950:CDS | 20.0% |
| !!! | GTTTGAAATATTAGAAGAAT+CGG | + | chr5_3:7967233-7967252 | Msa0795950:intron | 20.0% |
| !! | TAACATGTAAATTTCAAACT+CGG | - | chr5_3:7967403-7967422 | None:intergenic | 20.0% |
| !!! | TTTTAACTATATTGATGTCT+TGG | + | chr5_3:7967497-7967516 | Msa0795950:intron | 20.0% |
| !! | AAAACAAACACAACTAATAA+TGG | - | chr5_3:7967723-7967742 | None:intergenic | 20.0% |
| !! | AATCCATAATTTGATTGTAT+GGG | - | chr5_3:7968059-7968078 | None:intergenic | 20.0% |
| !! | AAATCCATAATTTGATTGTA+TGG | - | chr5_3:7968060-7968079 | None:intergenic | 20.0% |
| !! | ATACAATCAAATTATGGATT+TGG | + | chr5_3:7968059-7968078 | Msa0795950:three_prime_UTR | 20.0% |
| !! | TACAATCAAATTATGGATTT+GGG | + | chr5_3:7968060-7968079 | Msa0795950:three_prime_UTR | 20.0% |
| !!! | TTTTTTTTTGTTGCAATGAC+AGG | + | chr5_3:7963692-7963711 | Msa0795950:intron | 25.0% |
| !! | AAAAATATTTCTGTTGTTGC+AGG | + | chr5_3:7963803-7963822 | Msa0795950:CDS | 25.0% |
| ! | AAACTTGACAAAACAATCAA+TGG | - | chr5_3:7964297-7964316 | None:intergenic | 25.0% |
| ! | AAATAGTACAAAGAACGAAA+GGG | - | chr5_3:7964582-7964601 | None:intergenic | 25.0% |
| ! | AAAATAGTACAAAGAACGAA+AGG | - | chr5_3:7964583-7964602 | None:intergenic | 25.0% |
| ! | AAAATGAACAAGAACACTAT+TGG | + | chr5_3:7964612-7964631 | Msa0795950:intron | 25.0% |
| ! | TACTATGCTCATAGTTATTT+GGG | + | chr5_3:7964689-7964708 | Msa0795950:intron | 25.0% |
| ! | TTTATAGACTCCAATATTAG+AGG | + | chr5_3:7964778-7964797 | Msa0795950:intron | 25.0% |
| ! | AATTGACTATTGATACAATG+AGG | + | chr5_3:7964841-7964860 | Msa0795950:intron | 25.0% |
| ! | GTTTGTAAGAATCATGAAAA+AGG | + | chr5_3:7964890-7964909 | Msa0795950:intron | 25.0% |
| !! | TGGACTATTTCTTTAATGTT+TGG | + | chr5_3:7965065-7965084 | Msa0795950:intron | 25.0% |
| ! | TGAGTTTATCTAGTTACATA+AGG | + | chr5_3:7965124-7965143 | Msa0795950:intron | 25.0% |
| ! | ATCATAAACACTTATACGAT+AGG | + | chr5_3:7965313-7965332 | Msa0795950:intron | 25.0% |
| ! | GAAATTGTGAATAATGTATG+AGG | + | chr5_3:7965397-7965416 | Msa0795950:intron | 25.0% |
| ! | CGTAGATTAAAAATTAGCAA+TGG | - | chr5_3:7965440-7965459 | None:intergenic | 25.0% |
| !! | ATAATCTTAGTGCTATTGTA+TGG | + | chr5_3:7965497-7965516 | Msa0795950:intron | 25.0% |
| !! | TTGTATGGTAGTAGATATTT+TGG | + | chr5_3:7965512-7965531 | Msa0795950:intron | 25.0% |
| ! | ATTTCAATGGAAAACAATGA+AGG | + | chr5_3:7965591-7965610 | Msa0795950:intron | 25.0% |
| ! | AAGATTTAGAAATCCTCTAT+TGG | + | chr5_3:7965621-7965640 | Msa0795950:intron | 25.0% |
| ! | TTACAACTTTATAAACATGG+AGG | - | chr5_3:7965696-7965715 | None:intergenic | 25.0% |
| ! | GTGTTACAACTTTATAAACA+TGG | - | chr5_3:7965699-7965718 | None:intergenic | 25.0% |
| ! | TCTTCTCTTCTTTATTCTTT+AGG | + | chr5_3:7965809-7965828 | Msa0795950:intron | 25.0% |
| ! | CATTTAAACTTAATTGGTAG+AGG | - | chr5_3:7966028-7966047 | None:intergenic | 25.0% |
| ! | AAATAGTGAAGAATCAATTG+AGG | - | chr5_3:7966089-7966108 | None:intergenic | 25.0% |
| !! | ATTGATTCTTCACTATTTCA+TGG | + | chr5_3:7966091-7966110 | Msa0795950:intron | 25.0% |
| ! | AATAAATTGCACATTTGCAT+AGG | - | chr5_3:7966140-7966159 | None:intergenic | 25.0% |
| !!! | TAGTTTTATTCATAAACTGC+TGG | - | chr5_3:7966436-7966455 | None:intergenic | 25.0% |
| !!! | CAAGAATATATTCTGGAATA+TGG | + | chr5_3:7966849-7966868 | Msa0795950:CDS | 25.0% |
| !!! | AATATATTCTGGAATATGGA+AGG | + | chr5_3:7966853-7966872 | Msa0795950:CDS | 25.0% |
| !!! | ATATATTCTGGAATATGGAA+GGG | + | chr5_3:7966854-7966873 | Msa0795950:CDS | 25.0% |
| !!! | CTCAAAAGTTTTTAACTGTA+GGG | - | chr5_3:7967048-7967067 | None:intergenic | 25.0% |
| !!! | ACTCAAAAGTTTTTAACTGT+AGG | - | chr5_3:7967049-7967068 | None:intergenic | 25.0% |
| !! | ATTAGGTCTGTTTTATGTTT+TGG | - | chr5_3:7967184-7967203 | None:intergenic | 25.0% |
| ! | TCGGATACTAATATGAAAAT+AGG | + | chr5_3:7967252-7967271 | Msa0795950:intron | 25.0% |
| !! | TTTAGAGTAAACCGTTAAAT+TGG | - | chr5_3:7967287-7967306 | None:intergenic | 25.0% |
| !! | AGTCAATATTGTTATTGATC+AGG | + | chr5_3:7967804-7967823 | Msa0795950:intron | 25.0% |
| !!! | CAAAGTCATTTTCATTAAAC+AGG | - | chr5_3:7967867-7967886 | None:intergenic | 25.0% |
| ! | TAGCACATTAAAAATTGTCT+CGG | + | chr5_3:7967899-7967918 | Msa0795950:intron | 25.0% |
| ! | ATACTACAAGCTAATTAGAT+GGG | - | chr5_3:7968121-7968140 | None:intergenic | 25.0% |
| ! | ACATGACAAAAATGAAAACT+GGG | + | chr5_3:7968235-7968254 | Msa0795950:three_prime_UTR | 25.0% |
| CATCACTATTGTTATCTTGA+AGG | + | chr5_3:7963917-7963936 | Msa0795950:intron | 30.0% | |
| !! | TTTTGAGAGACATTATGCAA+TGG | + | chr5_3:7964199-7964218 | Msa0795950:intron | 30.0% |
| CTATAAGCTCTTGTAATTTG+TGG | + | chr5_3:7964258-7964277 | Msa0795950:intron | 30.0% | |
| ! | TCTTGTAATTTGTGGTTAGT+GGG | + | chr5_3:7964266-7964285 | Msa0795950:intron | 30.0% |
| ! | TTTTGTCAAGTTTTCTTCAG+CGG | + | chr5_3:7964304-7964323 | Msa0795950:intron | 30.0% |
| TGGAATCAATTTATCACCAA+TGG | - | chr5_3:7964366-7964385 | None:intergenic | 30.0% | |
| ATACAACTATGCATCTTGTT+TGG | + | chr5_3:7964548-7964567 | Msa0795950:intron | 30.0% | |
| AATAGTACAAAGAACGAAAG+GGG | - | chr5_3:7964581-7964600 | None:intergenic | 30.0% | |
| GTACTATGCTCATAGTTATT+TGG | + | chr5_3:7964688-7964707 | Msa0795950:intron | 30.0% | |
| ! | TTTCTTTTGTTAGACATACC+CGG | + | chr5_3:7964742-7964761 | Msa0795950:intron | 30.0% |
| TATAAATGAAGAGAAGCTTC+CGG | - | chr5_3:7964764-7964783 | None:intergenic | 30.0% | |
| ACAAATTCCTCCTCTAATAT+TGG | - | chr5_3:7964791-7964810 | None:intergenic | 30.0% | |
| ! | CTATTGCATTTTTAATGCGT+TGG | + | chr5_3:7964947-7964966 | Msa0795950:intron | 30.0% |
| !! | TTAATGCGTTGGTATTGTTT+TGG | + | chr5_3:7964958-7964977 | Msa0795950:intron | 30.0% |
| ! | TTTGAATCTCTTTTAGCATG+TGG | + | chr5_3:7965007-7965026 | Msa0795950:intron | 30.0% |
| TTGTTTATCAAATCAGGTCT+TGG | + | chr5_3:7965363-7965382 | Msa0795950:intron | 30.0% | |
| AAAAATTAGCAATGGCAATG+AGG | - | chr5_3:7965432-7965451 | None:intergenic | 30.0% | |
| TCAGTTTCTTACTTTCATGT+TGG | + | chr5_3:7965535-7965554 | Msa0795950:intron | 30.0% | |
| CTTTATAAACATGGAGGAAA+GGG | - | chr5_3:7965690-7965709 | None:intergenic | 30.0% | |
| ACTTTATAAACATGGAGGAA+AGG | - | chr5_3:7965691-7965710 | None:intergenic | 30.0% | |
| TAACACACTAGTATTATCCA+TGG | + | chr5_3:7965713-7965732 | Msa0795950:intron | 30.0% | |
| GTGCAATTTATTTGTGAGAA+TGG | + | chr5_3:7966148-7966167 | Msa0795950:intron | 30.0% | |
| CGAAGATTGAAACACAAATA+AGG | - | chr5_3:7966188-7966207 | None:intergenic | 30.0% | |
| ! | ATAAATCAAGTTTTGCGCAT+TGG | - | chr5_3:7966260-7966279 | None:intergenic | 30.0% |
| ! | TACTATCTGCTTTCAACTTT+TGG | + | chr5_3:7966595-7966614 | Msa0795950:intron | 30.0% |
| ACATATACCAACAATGATCT+TGG | - | chr5_3:7966699-7966718 | None:intergenic | 30.0% | |
| TAGATTGTTGAGGTGTAATA+AGG | - | chr5_3:7967003-7967022 | None:intergenic | 30.0% | |
| TCTGAACATATAGATTGTTG+AGG | - | chr5_3:7967013-7967032 | None:intergenic | 30.0% | |
| AACAACTACATTTGTGCTAA+AGG | - | chr5_3:7967319-7967338 | None:intergenic | 30.0% | |
| TTTAGCACAAATGTAGTTGT+TGG | + | chr5_3:7967318-7967337 | Msa0795950:intron | 30.0% | |
| GCTGAATATAAAGATGAAAC+AGG | - | chr5_3:7967455-7967474 | None:intergenic | 30.0% | |
| TTCCTATTTGTCTGACTATA+TGG | + | chr5_3:7967536-7967555 | Msa0795950:intron | 30.0% | |
| ATCCATATAGTCAGACAAAT+AGG | - | chr5_3:7967541-7967560 | None:intergenic | 30.0% | |
| AATTGAATTACCAGAACTGA+AGG | + | chr5_3:7967626-7967645 | Msa0795950:CDS | 30.0% | |
| TGTCCCATACAATCAAATTA+TGG | + | chr5_3:7968053-7968072 | Msa0795950:three_prime_UTR | 30.0% | |
| CATACTACAAGCTAATTAGA+TGG | - | chr5_3:7968122-7968141 | None:intergenic | 30.0% | |
| GACATGACAAAAATGAAAAC+TGG | + | chr5_3:7968234-7968253 | Msa0795950:three_prime_UTR | 30.0% | |
| !!! | GAATCTTAGTTTTGATGCCA+TGG | - | chr5_3:7963502-7963521 | None:intergenic | 35.0% |
| !! | AACCAGCTTTAGGGAAATTA+GGG | - | chr5_3:7963532-7963551 | None:intergenic | 35.0% |
| !! | AAACCAGCTTTAGGGAAATT+AGG | - | chr5_3:7963533-7963552 | None:intergenic | 35.0% |
| AACAGAACAAACCAGCTTTA+GGG | - | chr5_3:7963541-7963560 | None:intergenic | 35.0% | |
| AAACAGAACAAACCAGCTTT+AGG | - | chr5_3:7963542-7963561 | None:intergenic | 35.0% | |
| GCAACAAAGTTGTTATGTCT+TGG | - | chr5_3:7963727-7963746 | None:intergenic | 35.0% | |
| AGACATAACAACTTTGTTGC+TGG | + | chr5_3:7963727-7963746 | Msa0795950:CDS | 35.0% | |
| ATCGTGTCCTTAAAAGCTTT+GGG | - | chr5_3:7963755-7963774 | None:intergenic | 35.0% | |
| AATCGTGTCCTTAAAAGCTT+TGG | - | chr5_3:7963756-7963775 | None:intergenic | 35.0% | |
| ! | TTTGTTTGTTGAGCGTTACA+AGG | + | chr5_3:7963778-7963797 | Msa0795950:CDS | 35.0% |
| ! | TTGTTTGTTGAGCGTTACAA+GGG | + | chr5_3:7963779-7963798 | Msa0795950:CDS | 35.0% |
| CACTATTGTTATCTTGAAGG+TGG | + | chr5_3:7963920-7963939 | Msa0795950:intron | 35.0% | |
| ATTGTTATCTTGAAGGTGGT+AGG | + | chr5_3:7963924-7963943 | Msa0795950:intron | 35.0% | |
| TTGTTATCTTGAAGGTGGTA+GGG | + | chr5_3:7963925-7963944 | Msa0795950:intron | 35.0% | |
| !! | AGTGCGTAAATTTTAGTCTC+TGG | + | chr5_3:7964122-7964141 | Msa0795950:intron | 35.0% |
| ! | CTCTTGTAATTTGTGGTTAG+TGG | + | chr5_3:7964265-7964284 | Msa0795950:intron | 35.0% |
| TGTTTCTTGTGGATCCAATT+AGG | + | chr5_3:7964331-7964350 | Msa0795950:intron | 35.0% | |
| TGATTCCAACTTGTGTAATG+TGG | + | chr5_3:7964378-7964397 | Msa0795950:intron | 35.0% | |
| GTCACACTATAGTGAAATGT+AGG | - | chr5_3:7964483-7964502 | None:intergenic | 35.0% | |
| ATAGTACAAAGAACGAAAGG+GGG | - | chr5_3:7964580-7964599 | None:intergenic | 35.0% | |
| AATCCTAATGCACACACAAA+AGG | - | chr5_3:7964659-7964678 | None:intergenic | 35.0% | |
| TATGCTCATAGTTATTTGGG+TGG | + | chr5_3:7964692-7964711 | Msa0795950:intron | 35.0% | |
| ATGCTCATAGTTATTTGGGT+GGG | + | chr5_3:7964693-7964712 | Msa0795950:intron | 35.0% | |
| ATAAATGAAGAGAAGCTTCC+GGG | - | chr5_3:7964763-7964782 | None:intergenic | 35.0% | |
| ATAGACTCCAATATTAGAGG+AGG | + | chr5_3:7964781-7964800 | Msa0795950:intron | 35.0% | |
| !!! | GTTGGTATTGTTTTGGACTT+TGG | + | chr5_3:7964965-7964984 | Msa0795950:intron | 35.0% |
| !!! | AGCTTGCATTAGTTTTAGCA+TGG | + | chr5_3:7965045-7965064 | Msa0795950:intron | 35.0% |
| AGAAGTGAAAATGAGTACAC+CGG | - | chr5_3:7965470-7965489 | None:intergenic | 35.0% | |
| TTTCTACTTGCTTCCAATAG+AGG | - | chr5_3:7965637-7965656 | None:intergenic | 35.0% | |
| CTATTGGAAGCAAGTAGAAA+CGG | + | chr5_3:7965637-7965656 | Msa0795950:intron | 35.0% | |
| AAGTGATATTCAAAACCAGC+AGG | - | chr5_3:7965750-7965769 | None:intergenic | 35.0% | |
| TATTGTCAAACCATGTGTTG+CGG | + | chr5_3:7965774-7965793 | Msa0795950:intron | 35.0% | |
| AAACTTTGCTCCTATTGCTA+GGG | - | chr5_3:7965873-7965892 | None:intergenic | 35.0% | |
| ! | AACTTCTTTGGTTTCCTCAA+CGG | - | chr5_3:7965899-7965918 | None:intergenic | 35.0% |
| CATGATGTTCAAAGTATACC+AGG | - | chr5_3:7965923-7965942 | None:intergenic | 35.0% | |
| ! | AAGTGTGTTTTTCGCTGAAA+TGG | + | chr5_3:7966301-7966320 | Msa0795950:intron | 35.0% |
| ! | AGTGTGTTTTTCGCTGAAAT+GGG | + | chr5_3:7966302-7966321 | Msa0795950:intron | 35.0% |
| TGAACTCTCTGTATATCAAG+AGG | - | chr5_3:7966351-7966370 | None:intergenic | 35.0% | |
| ACTTTGACCAAGATCATTGT+TGG | + | chr5_3:7966689-7966708 | Msa0795950:intron | 35.0% | |
| TGGTAACAAAATCTTGTGTC+AGG | + | chr5_3:7966746-7966765 | Msa0795950:intron | 35.0% | |
| GTAACAAAATCTTGTGTGTC+AGG | + | chr5_3:7966813-7966832 | Msa0795950:intron | 35.0% | |
| !! | GTTGATGATTTGATTGCAAC+TGG | + | chr5_3:7966930-7966949 | Msa0795950:CDS | 35.0% |
| ! | GATTTACTTGGTGAGAAAAG+TGG | + | chr5_3:7966975-7966994 | Msa0795950:intron | 35.0% |
| TACAAAGATGGTCAATTTGG+TGG | - | chr5_3:7967075-7967094 | None:intergenic | 35.0% | |
| GCTTACAAAGATGGTCAATT+TGG | - | chr5_3:7967078-7967097 | None:intergenic | 35.0% | |
| TTCAGAGTTGCTTACAAAGA+TGG | - | chr5_3:7967087-7967106 | None:intergenic | 35.0% | |
| !!! | ATGTTTTGGTCACATGACTA+GGG | - | chr5_3:7967170-7967189 | None:intergenic | 35.0% |
| !!! | TATGTTTTGGTCACATGACT+AGG | - | chr5_3:7967171-7967190 | None:intergenic | 35.0% |
| GGTTACAGAGACCAATTTAA+CGG | + | chr5_3:7967273-7967292 | Msa0795950:intron | 35.0% | |
| ! | CGGTTTACTCTAAAAACTCT+AGG | + | chr5_3:7967293-7967312 | Msa0795950:intron | 35.0% |
| !!! | TGATGTCTTTTTAGAACGTG+TGG | + | chr5_3:7967575-7967594 | Msa0795950:intron | 35.0% |
| !!! | GATGTCTTTTTAGAACGTGT+GGG | + | chr5_3:7967576-7967595 | Msa0795950:intron | 35.0% |
| AATACACATACCTTCAGTTC+TGG | - | chr5_3:7967639-7967658 | None:intergenic | 35.0% | |
| GACTAGAAACACATGCATTT+CGG | - | chr5_3:7967788-7967807 | None:intergenic | 35.0% | |
| ! | ATTTGGGAGATGTCATTTAG+TGG | + | chr5_3:7968076-7968095 | Msa0795950:three_prime_UTR | 35.0% |
| ! | GGTGGCTTATAAATTTTGCA+TGG | + | chr5_3:7968269-7968288 | Msa0795950:three_prime_UTR | 35.0% |
| GGAGCTTAATTTAGTGAAGA+AGG | + | chr5_3:7968290-7968309 | Msa0795950:three_prime_UTR | 35.0% | |
| !!! | TAGTTTTGATGCCATGGAGA+CGG | - | chr5_3:7963496-7963515 | None:intergenic | 40.0% |
| TGTTATCTTGAAGGTGGTAG+GGG | + | chr5_3:7963926-7963945 | Msa0795950:intron | 40.0% | |
| TCCATGGCTACAAGAAAGTT+GGG | + | chr5_3:7963949-7963968 | Msa0795950:intron | 40.0% | |
| ! | TGTAATTTGTGGTTAGTGGG+TGG | + | chr5_3:7964269-7964288 | Msa0795950:intron | 40.0% |
| AATGGTTCTCCATGCCTAAT+TGG | - | chr5_3:7964348-7964367 | None:intergenic | 40.0% | |
| AATTAGGCATGGAGAACCAT+TGG | + | chr5_3:7964347-7964366 | Msa0795950:intron | 40.0% | |
| AGTTGGAACATGCGTTAAGT+GGG | - | chr5_3:7964405-7964424 | None:intergenic | 40.0% | |
| !! | GACACTGTCACTTTAAGTAC+TGG | + | chr5_3:7964500-7964519 | Msa0795950:intron | 40.0% |
| ! | TGTCCTTTTGTGTGTGCATT+AGG | + | chr5_3:7964653-7964672 | Msa0795950:intron | 40.0% |
| TGCTCATAGTTATTTGGGTG+GGG | + | chr5_3:7964694-7964713 | Msa0795950:intron | 40.0% | |
| ATGTTTGGATCCCATCATTC+AGG | + | chr5_3:7965080-7965099 | Msa0795950:intron | 40.0% | |
| CCAAACTAAGCCTGAATGAT+GGG | - | chr5_3:7965093-7965112 | None:intergenic | 40.0% | |
| TCCAAACTAAGCCTGAATGA+TGG | - | chr5_3:7965094-7965113 | None:intergenic | 40.0% | |
| ! | AAGCAAACACAGAGAGCATA+TGG | - | chr5_3:7965222-7965241 | None:intergenic | 40.0% |
| ! | TTTTAATCTACGTCCCCTAC+CGG | + | chr5_3:7965448-7965467 | Msa0795950:intron | 40.0% |
| TGAAAATGAGTACACCGGTA+GGG | - | chr5_3:7965465-7965484 | None:intergenic | 40.0% | |
| AGCAGGAAATGAAGAAACCA+TGG | - | chr5_3:7965733-7965752 | None:intergenic | 40.0% | |
| ATGGTTTCTTCATTTCCTGC+TGG | + | chr5_3:7965732-7965751 | Msa0795950:intron | 40.0% | |
| AATTAGTTCACCGCAACACA+TGG | - | chr5_3:7965787-7965806 | None:intergenic | 40.0% | |
| ! | GAAGCTCGAGGTTTCATTTT+TGG | + | chr5_3:7965836-7965855 | Msa0795950:CDS | 40.0% |
| CAAACTTTGCTCCTATTGCT+AGG | - | chr5_3:7965874-7965893 | None:intergenic | 40.0% | |
| AGTATACCAGGCAACTTCTT+TGG | - | chr5_3:7965911-7965930 | None:intergenic | 40.0% | |
| ATAGTGTGATGCAAGTGAAG+AGG | - | chr5_3:7965958-7965977 | None:intergenic | 40.0% | |
| GAGGAAGAAAACACACATAG+TGG | - | chr5_3:7966009-7966028 | None:intergenic | 40.0% | |
| ATTTGTGAGAATGGTTCTCG+AGG | + | chr5_3:7966157-7966176 | Msa0795950:intron | 40.0% | |
| TATTCCTTGTGTTTGTGCCT+TGG | + | chr5_3:7966277-7966296 | Msa0795950:intron | 40.0% | |
| AGCGAAAAACACACTTTCCA+AGG | - | chr5_3:7966297-7966316 | None:intergenic | 40.0% | |
| !! | TCAGTTATGTGGCTTTGTCA+TGG | + | chr5_3:7966661-7966680 | Msa0795950:intron | 40.0% |
| GTGTGTCAGACAAAATCTTG+TGG | + | chr5_3:7966726-7966745 | Msa0795950:intron | 40.0% | |
| GATGATTTGATTGCAACTGG+TGG | + | chr5_3:7966933-7966952 | Msa0795950:CDS | 40.0% | |
| ATGTGAATACGTACGTGACA+GGG | + | chr5_3:7967953-7967972 | Msa0795950:intron | 40.0% | |
| TATTCCACCAACACGTACAA+CGG | - | chr5_3:7968001-7968020 | None:intergenic | 40.0% | |
| ATATGAGCTGCTCGTGAATA+TGG | + | chr5_3:7968028-7968047 | Msa0795950:exon | 40.0% | |
| AATTTGTATGACCCACCCTT+TGG | + | chr5_3:7968163-7968182 | Msa0795950:three_prime_UTR | 40.0% | |
| ATTTGTATGACCCACCCTTT+GGG | + | chr5_3:7968164-7968183 | Msa0795950:three_prime_UTR | 40.0% | |
| TTATAAGCCACCTCTAGTCT+GGG | - | chr5_3:7968261-7968280 | None:intergenic | 40.0% | |
| TTTATAAGCCACCTCTAGTC+TGG | - | chr5_3:7968262-7968281 | None:intergenic | 40.0% | |
| GAGGAAGAGGAGAAAGAAAG+TGG | - | chr5_3:7963409-7963428 | None:intergenic | 45.0% | |
| TGAGTACAGAGAAGAGGAAG+AGG | - | chr5_3:7963422-7963441 | None:intergenic | 45.0% | |
| ! | GTGAGTTGAGTACAGAGAAG+AGG | - | chr5_3:7963428-7963447 | None:intergenic | 45.0% |
| GTCTTACCCTAACCATAACC+AGG | + | chr5_3:7963466-7963485 | Msa0795950:CDS | 45.0% | |
| !! | AGTTTTGATGCCATGGAGAC+GGG | - | chr5_3:7963495-7963514 | None:intergenic | 45.0% |
| GTCCCTAATTTCCCTAAAGC+TGG | + | chr5_3:7963527-7963546 | Msa0795950:CDS | 45.0% | |
| ! | GCTGGATCCCAAAGCTTTTA+AGG | + | chr5_3:7963745-7963764 | Msa0795950:CDS | 45.0% |
| GTCCATGGCTACAAGAAAGT+TGG | + | chr5_3:7963948-7963967 | Msa0795950:intron | 45.0% | |
| ACCCAACTTTCTTGTAGCCA+TGG | - | chr5_3:7963953-7963972 | None:intergenic | 45.0% | |
| TGGCTACAAGAAAGTTGGGT+AGG | + | chr5_3:7963953-7963972 | Msa0795950:intron | 45.0% | |
| ! | TCAGCGGTTCTTGTTTCTTG+TGG | + | chr5_3:7964320-7964339 | Msa0795950:intron | 45.0% |
| CTTGTGGATCCAATTAGGCA+TGG | + | chr5_3:7964336-7964355 | Msa0795950:intron | 45.0% | |
| TGGGTCCACATTACACAAGT+TGG | - | chr5_3:7964386-7964405 | None:intergenic | 45.0% | |
| GAGTTGGAACATGCGTTAAG+TGG | - | chr5_3:7964406-7964425 | None:intergenic | 45.0% | |
| TAACGCATGTTCCAACTCAG+TGG | + | chr5_3:7964408-7964427 | Msa0795950:intron | 45.0% | |
| TCCAACTCAGTGGATGTTTG+TGG | + | chr5_3:7964418-7964437 | Msa0795950:intron | 45.0% | |
| ACCACAAACATCCACTGAGT+TGG | - | chr5_3:7964422-7964441 | None:intergenic | 45.0% | |
| ACAATGAGGTCTAGCACAAG+TGG | + | chr5_3:7964855-7964874 | Msa0795950:intron | 45.0% | |
| CCCATCATTCAGGCTTAGTT+TGG | + | chr5_3:7965090-7965109 | Msa0795950:intron | 45.0% | |
| AGCAATGGCAATGAGGAAAG+AGG | - | chr5_3:7965425-7965444 | None:intergenic | 45.0% | |
| GAAAATGAGTACACCGGTAG+GGG | - | chr5_3:7965464-7965483 | None:intergenic | 45.0% | |
| GTGAAAATGAGTACACCGGT+AGG | - | chr5_3:7965466-7965485 | None:intergenic | 45.0% | |
| GGAAGCAAGTAGAAACGGAA+TGG | + | chr5_3:7965642-7965661 | Msa0795950:intron | 45.0% | |
| ! | TCTTTAGGAATCGAAGCTCG+AGG | + | chr5_3:7965824-7965843 | Msa0795950:intron | 45.0% |
| GAGCAAAGTTTGTACCGTTG+AGG | + | chr5_3:7965882-7965901 | Msa0795950:CDS | 45.0% | |
| AGGAAACCAAAGAAGTTGCC+TGG | + | chr5_3:7965902-7965921 | Msa0795950:CDS | 45.0% | |
| TTGCATAGGTGATGCTATGC+AGG | - | chr5_3:7966126-7966145 | None:intergenic | 45.0% | |
| CTTTCCAAGGCACAAACACA+AGG | - | chr5_3:7966284-7966303 | None:intergenic | 45.0% | |
| GGAATATGGAAGGGATTGTC+TGG | + | chr5_3:7966863-7966882 | Msa0795950:CDS | 45.0% | |
| GATTGTCTGGAGATGCATGT+TGG | + | chr5_3:7966876-7966895 | Msa0795950:CDS | 45.0% | |
| GGTGCAGCTATGGATTTACT+TGG | + | chr5_3:7966963-7966982 | Msa0795950:CDS | 45.0% | |
| CATGTGAATACGTACGTGAC+AGG | + | chr5_3:7967952-7967971 | Msa0795950:intron | 45.0% | |
| AGGGTCGTGAACGTTTGAAT+GGG | + | chr5_3:7967972-7967991 | Msa0795950:intron | 45.0% | |
| !!! | TATATAAACTAAATTTTAAA+CGG | - | chr5_3:7964058-7964077 | None:intergenic | 5.0% |
| !!! | ATTATTATATTATAATTTGT+GGG | + | chr5_3:7964455-7964474 | Msa0795950:intron | 5.0% |
| !!! | TTTTTTTTTTGTTAAATATA+AGG | - | chr5_3:7967748-7967767 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATTAGAAAAAT+GGG | - | chr5_3:7968214-7968233 | None:intergenic | 5.0% |
| GGGGATCCTGGTTATGGTTA+GGG | - | chr5_3:7963475-7963494 | None:intergenic | 50.0% | |
| !! | GTTTTGATGCCATGGAGACG+GGG | - | chr5_3:7963494-7963513 | None:intergenic | 50.0% |
| GCTCCTATTGCTAGGGCAAT+GGG | - | chr5_3:7965866-7965885 | None:intergenic | 50.0% | |
| TGCTCCTATTGCTAGGGCAA+TGG | - | chr5_3:7965867-7965886 | None:intergenic | 50.0% | |
| CATGTTGGAGCTGTTGAAGC+TGG | + | chr5_3:7966891-7966910 | Msa0795950:CDS | 50.0% | |
| ! | AGCTGGTGAACGTGCTATTG+TGG | + | chr5_3:7966908-7966927 | Msa0795950:CDS | 50.0% |
| ATTGCAACTGGTGGAACGCT+CGG | + | chr5_3:7966942-7966961 | Msa0795950:CDS | 50.0% | |
| ! | TTTAGAACGTGTGGGAGCAG+AGG | + | chr5_3:7967584-7967603 | Msa0795950:intron | 50.0% |
| CAGGGTCGTGAACGTTTGAA+TGG | + | chr5_3:7967971-7967990 | Msa0795950:intron | 50.0% | |
| TGAGACGAGAGAGACCCAAA+GGG | - | chr5_3:7968181-7968200 | None:intergenic | 50.0% | |
| ATGAGACGAGAGAGACCCAA+AGG | - | chr5_3:7968182-7968201 | None:intergenic | 50.0% | |
| CGGGGATCCTGGTTATGGTT+AGG | - | chr5_3:7963476-7963495 | None:intergenic | 55.0% | |
| TTGAAGGTGGTAGGGGTCCA+TGG | + | chr5_3:7963933-7963952 | Msa0795950:intron | 55.0% | |
| CCTATTGCTAGGGCAATGGG+AGG | - | chr5_3:7965863-7965882 | None:intergenic | 55.0% | |
| CCTCCCATTGCCCTAGCAAT+AGG | + | chr5_3:7965860-7965879 | Msa0795950:CDS | 55.0% | |
| TGGGAAGCCGTTGTACGTGT+TGG | + | chr5_3:7967991-7968010 | Msa0795950:CDS | 55.0% | |
| GAAGCCGTTGTACGTGTTGG+TGG | + | chr5_3:7967994-7968013 | Msa0795950:CDS | 55.0% | |
| ACGAGAGAGACCCAAAGGGT+GGG | - | chr5_3:7968177-7968196 | None:intergenic | 55.0% | |
| GAAAACTGGGCCCAGACTAG+AGG | + | chr5_3:7968248-7968267 | Msa0795950:three_prime_UTR | 55.0% | |
| GGAGACGGGGATCCTGGTTA+TGG | - | chr5_3:7963481-7963500 | None:intergenic | 60.0% | |
| AACCAGGATCCCCGTCTCCA+TGG | + | chr5_3:7963482-7963501 | Msa0795950:CDS | 60.0% | |
| !! | TGGAACGCTCGGTGCAGCTA+TGG | + | chr5_3:7966953-7966972 | Msa0795950:CDS | 60.0% |
| ACGTGTGGGAGCAGAGGTAG+TGG | + | chr5_3:7967590-7967609 | Msa0795950:CDS | 60.0% | |
| GACGAGAGAGACCCAAAGGG+TGG | - | chr5_3:7968178-7968197 | None:intergenic | 60.0% | |
| AACTGGGCCCAGACTAGAGG+TGG | + | chr5_3:7968251-7968270 | Msa0795950:three_prime_UTR | 60.0% | |
| TGCCATGGAGACGGGGATCC+TGG | - | chr5_3:7963487-7963506 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 7963392 | 7968387 | 7963392 | ID=Msa0795950;Name=Msa0795950 |
| chr5_3 | mRNA | 7963392 | 7968387 | 7963392 | ID=Msa0795950-mRNA-1;Parent=Msa0795950;Name=Msa0795950-mRNA-1;_AED=0.25;_eAED=0.25;_QI=69|1|1|1|1|1|6|354|186 |
| chr5_3 | exon | 7963392 | 7963548 | 7963392 | ID=Msa0795950-mRNA-1:exon:3283;Parent=Msa0795950-mRNA-1 |
| chr5_3 | exon | 7963714 | 7963824 | 7963714 | ID=Msa0795950-mRNA-1:exon:3284;Parent=Msa0795950-mRNA-1 |
| chr5_3 | exon | 7965831 | 7965923 | 7965831 | ID=Msa0795950-mRNA-1:exon:3285;Parent=Msa0795950-mRNA-1 |
| chr5_3 | exon | 7966835 | 7966984 | 7966835 | ID=Msa0795950-mRNA-1:exon:3286;Parent=Msa0795950-mRNA-1 |
| chr5_3 | exon | 7967589 | 7967647 | 7967589 | ID=Msa0795950-mRNA-1:exon:3287;Parent=Msa0795950-mRNA-1 |
| chr5_3 | exon | 7967974 | 7968387 | 7967974 | ID=Msa0795950-mRNA-1:exon:3288;Parent=Msa0795950-mRNA-1 |
| chr5_3 | five_prime_UTR | 7963392 | 7963460 | 7963392 | ID=Msa0795950-mRNA-1:five_prime_utr;Parent=Msa0795950-mRNA-1 |
| chr5_3 | CDS | 7963461 | 7963548 | 7963461 | ID=Msa0795950-mRNA-1:cds;Parent=Msa0795950-mRNA-1 |
| chr5_3 | CDS | 7963714 | 7963824 | 7963714 | ID=Msa0795950-mRNA-1:cds;Parent=Msa0795950-mRNA-1 |
| chr5_3 | CDS | 7965831 | 7965923 | 7965831 | ID=Msa0795950-mRNA-1:cds;Parent=Msa0795950-mRNA-1 |
| chr5_3 | CDS | 7966835 | 7966984 | 7966835 | ID=Msa0795950-mRNA-1:cds;Parent=Msa0795950-mRNA-1 |
| chr5_3 | CDS | 7967589 | 7967647 | 7967589 | ID=Msa0795950-mRNA-1:cds;Parent=Msa0795950-mRNA-1 |
| chr5_3 | CDS | 7967974 | 7968033 | 7967974 | ID=Msa0795950-mRNA-1:cds;Parent=Msa0795950-mRNA-1 |
| chr5_3 | three_prime_UTR | 7968034 | 7968387 | 7968034 | ID=Msa0795950-mRNA-1:three_prime_utr;Parent=Msa0795950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
