AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0796280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796280 MtrunA17_Chr5g0399221 97.802 364 5 1 1 361 1 364 0.0 743
Msa0796280 MtrunA17_Chr6g0487101 52.941 289 135 1 68 356 93 380 8.82e-108 320
Msa0796280 MtrunA17_Chr8g0389771 53.265 291 133 2 68 356 88 377 6.18e-106 316
Msa0796280 MtrunA17_Chr7g0258341 47.869 305 144 4 60 356 90 387 7.53e-93 283
Msa0796280 MtrunA17_Chr5g0446301 46.599 294 151 4 66 356 67 357 5.75e-92 279
Msa0796280 MtrunA17_Chr7g0265201 44.575 341 163 8 25 356 62 385 1.53e-87 269
Msa0796280 MtrunA17_Chr1g0194311 39.335 361 201 6 12 356 10 368 5.86e-84 259
Msa0796280 MtrunA17_Chr4g0070051 42.857 308 155 7 58 358 52 345 1.18e-75 237
Msa0796280 MtrunA17_Chr2g0294321 40.656 305 165 4 57 356 53 346 1.01e-70 224
Msa0796280 MtrunA17_Chr7g0217941 40.323 310 165 7 59 357 5 305 2.48e-70 222
Msa0796280 MtrunA17_Chr6g0466961 36.741 313 179 6 50 356 25 324 3.52e-68 217
Msa0796280 MtrunA17_Chr6g0453551 38.835 309 171 6 59 357 5 305 1.09e-67 216
Msa0796280 MtrunA17_Chr6g0466951 37.700 313 176 6 50 356 54 353 4.70e-66 213
Msa0796280 MtrunA17_Chr4g0037751 33.894 357 218 6 12 358 15 363 2.00e-65 211
Msa0796280 MtrunA17_Chr5g0420831 34.746 354 215 5 13 358 18 363 2.18e-65 211
Msa0796280 MtrunA17_Chr1g0161731 35.632 348 201 7 16 356 8 339 5.82e-64 207
Msa0796280 MtrunA17_Chr2g0295851 39.016 305 161 5 57 356 52 336 9.33e-64 206
Msa0796280 MtrunA17_Chr8g0351871 37.013 308 171 6 58 357 31 323 1.62e-62 202
Msa0796280 MtrunA17_Chr5g0440871 35.065 308 174 6 56 357 32 319 1.93e-52 176
Msa0796280 MtrunA17_Chr7g0272141 30.769 364 222 7 14 359 183 534 1.04e-47 169
Msa0796280 MtrunA17_Chr4g0069881 31.447 318 192 6 57 359 221 527 5.05e-47 167
Msa0796280 MtrunA17_Chr6g0459781 44.828 174 93 2 59 232 12 182 6.24e-47 158
Msa0796280 MtrunA17_Chr8g0345281 32.063 315 187 6 60 359 279 581 3.96e-46 166
Msa0796280 MtrunA17_Chr8g0384121 32.476 311 177 7 68 356 254 553 4.11e-46 165
Msa0796280 MtrunA17_Chr1g0192331 31.366 322 184 9 60 359 214 520 1.54e-44 160
Msa0796280 MtrunA17_Chr1g0195301 32.484 314 179 8 65 359 248 547 7.90e-43 156
Msa0796280 MtrunA17_Chr1g0195321 32.484 314 179 8 65 359 248 547 7.90e-43 156
Msa0796280 MtrunA17_Chr4g0069841 30.032 313 192 6 62 359 208 508 8.69e-43 155
Msa0796280 MtrunA17_Chr2g0314691 39.000 200 119 3 161 358 5 203 9.28e-43 147
Msa0796280 MtrunA17_Chr1g0175661 31.132 318 190 7 59 359 245 550 1.34e-42 155
Msa0796280 MtrunA17_Chr4g0011771 31.790 324 191 8 50 359 198 505 3.37e-42 154
Msa0796280 MtrunA17_Chr4g0025841 36.000 250 138 4 58 304 35 265 4.17e-42 148
Msa0796280 MtrunA17_Chr4g0018371 32.595 316 186 9 60 359 227 531 4.45e-42 154
Msa0796280 MtrunA17_Chr7g0269531 31.546 317 185 8 59 356 251 554 5.61e-42 154
Msa0796280 MtrunA17_Chr7g0265161 36.486 222 115 5 140 357 14 213 9.75e-42 146
Msa0796280 MtrunA17_Chr1g0195331 32.166 314 180 8 65 359 248 547 1.23e-41 153
Msa0796280 MtrunA17_Chr3g0090091 30.380 316 193 8 60 359 216 520 2.01e-41 152
Msa0796280 MtrunA17_Chr3g0080391 30.769 312 194 6 60 361 269 568 6.39e-41 151
Msa0796280 MtrunA17_Chr3g0079341 31.469 286 172 7 60 332 215 489 7.58e-41 150
Msa0796280 MtrunA17_Chr3g0079361 30.063 316 194 8 60 359 215 519 9.19e-41 150
Msa0796280 MtrunA17_Chr3g0079351 29.747 316 195 8 60 359 215 519 9.67e-41 150
Msa0796280 MtrunA17_Chr7g0269511 29.787 329 201 8 49 359 240 556 1.65e-40 150
Msa0796280 MtrunA17_Chr8g0354901 30.449 312 195 6 60 361 276 575 2.89e-40 149
Msa0796280 MtrunA17_Chr2g0302021 29.560 318 197 6 57 359 212 517 3.43e-40 148
Msa0796280 MtrunA17_Chr7g0269521 29.375 320 197 7 57 359 247 554 3.49e-40 149
Msa0796280 MtrunA17_Chr6g0460141 50.000 132 63 1 99 230 16 144 3.54e-40 139
Msa0796280 MtrunA17_Chr7g0269541 28.358 335 202 7 51 359 226 548 4.28e-40 149
Msa0796280 MtrunA17_Chr3g0129921 30.794 315 182 7 66 356 251 553 7.72e-40 148
Msa0796280 MtrunA17_Chr7g0233801 29.524 315 196 6 60 359 242 545 1.11e-39 147
Msa0796280 MtrunA17_Chr1g0195351 31.847 314 179 9 65 359 248 545 1.50e-39 147
Msa0796280 MtrunA17_Chr1g0147051 29.290 338 199 8 50 359 274 599 4.24e-39 146
Msa0796280 MtrunA17_Chr7g0233831 29.430 316 196 6 60 359 243 547 4.75e-39 145
Msa0796280 MtrunA17_Chr1g0192311 29.483 329 180 7 60 359 257 562 6.69e-38 143
Msa0796280 MtrunA17_Chr1g0192281 29.483 329 180 7 60 359 257 562 6.69e-38 143
Msa0796280 MtrunA17_Chr3g0080381 30.218 321 195 7 57 360 313 621 7.26e-38 143
Msa0796280 MtrunA17_Chr1g0192321 29.841 315 195 6 60 359 272 575 7.28e-38 143
Msa0796280 MtrunA17_Chr5g0437831 30.625 320 188 9 48 348 65 369 7.64e-38 139
Msa0796280 MtrunA17_Chr7g0233771 30.420 286 175 5 60 332 242 516 9.28e-38 142
Msa0796280 MtrunA17_Chr2g0295531 32.042 284 170 5 60 332 232 503 1.35e-37 142
Msa0796280 MtrunA17_Chr4g0069861 30.094 319 194 7 53 356 202 506 1.62e-37 141
Msa0796280 MtrunA17_Chr8g0354911 30.503 318 192 7 60 360 300 605 1.81e-37 142
Msa0796280 MtrunA17_Chr8g0391291 30.745 322 191 8 60 361 228 537 3.44e-37 140
Msa0796280 MtrunA17_Chr1g0192301 29.518 332 176 8 60 359 262 567 3.55e-37 141
Msa0796280 MtrunA17_Chr3g0126771 29.747 316 194 7 60 359 286 589 6.06e-37 140
Msa0796280 MtrunA17_Chr2g0302001 32.906 234 137 5 140 359 202 429 1.65e-36 137
Msa0796280 MtrunA17_Chr4g0000121 28.875 329 182 7 60 359 244 549 2.48e-36 138
Msa0796280 MtrunA17_Chr8g0391311 30.745 322 191 8 60 361 230 539 2.59e-36 138
Msa0796280 MtrunA17_Chr7g0270691 29.102 323 201 6 54 359 230 541 4.21e-36 137
Msa0796280 MtrunA17_Chr4g0011751 29.022 317 195 8 61 359 177 481 2.56e-35 134
Msa0796280 MtrunA17_Chr4g0011791 30.128 312 191 8 60 359 205 501 2.59e-35 135
Msa0796280 MtrunA17_Chr1g0195311 32.342 269 152 7 107 359 52 306 7.68e-35 130
Msa0796280 MtrunA17_Chr7g0268241 30.421 309 175 8 68 360 59 343 1.08e-34 130
Msa0796280 MtrunA17_Chr2g0334111 28.889 315 189 7 57 359 24 315 1.24e-34 129
Msa0796280 MtrunA17_Chr1g0194091 29.642 307 184 7 54 348 249 535 1.76e-34 133
Msa0796280 MtrunA17_Chr5g0440901 46.324 136 70 1 176 308 13 148 1.76e-34 124
Msa0796280 MtrunA17_Chr4g0067611 29.577 284 177 5 60 332 258 529 6.57e-34 132
Msa0796280 MtrunA17_Chr4g0069891 30.717 293 177 6 52 332 279 557 1.20e-33 131
Msa0796280 MtrunA17_Chr7g0272151 28.125 320 195 7 60 359 271 575 4.25e-33 129
Msa0796280 MtrunA17_Chr7g0234711 32.287 223 131 5 152 359 44 261 5.25e-33 124
Msa0796280 MtrunA17_Chr4g0067601 29.965 287 176 6 57 332 257 529 1.66e-32 127
Msa0796280 MtrunA17_Chr2g0295551 31.183 279 169 5 65 332 255 521 4.02e-32 126
Msa0796280 MtrunA17_Chr2g0301931 28.873 284 174 6 85 352 12 283 4.71e-32 122
Msa0796280 MtrunA17_Chr8g0345211 27.848 316 203 6 53 356 269 571 4.29e-31 124
Msa0796280 MtrunA17_Chr1g0194081 28.797 316 198 7 57 359 254 555 5.02e-31 123
Msa0796280 MtrunA17_Chr7g0270631 30.345 290 166 7 65 332 800 1075 4.46e-30 121
Msa0796280 MtrunA17_Chr7g0270631 29.286 280 174 5 65 332 252 519 2.27e-28 116
Msa0796280 MtrunA17_Chr8g0380581 25.737 373 234 11 15 359 11 368 9.79e-30 117
Msa0796280 MtrunA17_Chr7g0270651 29.861 288 176 7 57 332 258 531 1.20e-29 119
Msa0796280 MtrunA17_Chr7g0270661 29.966 297 181 8 49 332 249 531 1.40e-29 119
Msa0796280 MtrunA17_Chr7g0270671 29.966 297 181 8 49 332 249 531 1.40e-29 119
Msa0796280 MtrunA17_Chr2g0295541 28.213 319 173 6 56 332 248 552 7.15e-28 114
Msa0796280 MtrunA17_Chr5g0440891 38.202 178 89 3 56 230 41 200 1.90e-26 104
Msa0796280 MtrunA17_Chr7g0271381 26.606 327 195 10 60 359 240 548 6.98e-26 108
Msa0796280 MtrunA17_Chr6g0459791 36.752 117 74 0 241 357 1 117 5.51e-21 87.4
Msa0796280 MtrunA17_Chr4g0073911 32.086 187 109 4 71 250 19 194 4.43e-20 88.2
Msa0796280 MtrunA17_Chr5g0440881 30.303 132 88 2 228 356 9 139 2.29e-16 75.5
Msa0796280 MtrunA17_Chr2g0299431 26.293 232 139 6 51 265 34 250 8.34e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796280 AT5G47500.1 70.637 361 85 2 9 361 15 362 0.0 545
Msa0796280 AT5G19730.1 51.903 289 138 1 68 356 94 381 1.13e-104 313
Msa0796280 AT2G36710.1 48.534 307 146 3 59 360 90 389 4.40e-96 292
Msa0796280 AT5G55590.1 49.834 301 147 3 58 356 80 378 6.78e-95 288
Msa0796280 AT1G05310.1 44.660 309 156 4 60 360 91 392 5.31e-87 268
Msa0796280 AT2G36700.1 45.000 300 156 4 59 356 41 333 7.83e-87 266
Msa0796280 AT5G55590.2 53.012 249 114 2 58 304 80 327 6.84e-86 263
Msa0796280 AT5G07430.1 42.053 302 165 4 58 358 65 357 8.46e-85 261
Msa0796280 AT2G21610.1 42.715 302 154 6 59 358 50 334 2.55e-81 252
Msa0796280 AT2G21610.2 42.715 302 154 6 59 358 55 339 3.75e-81 252
Msa0796280 AT1G69940.1 41.639 305 168 4 58 361 65 360 8.70e-80 248
Msa0796280 AT5G07420.1 41.639 305 168 4 58 361 65 360 3.46e-79 247
Msa0796280 AT5G07410.1 41.311 305 169 4 58 361 65 360 5.39e-79 246
Msa0796280 AT5G61680.1 41.060 302 169 3 58 358 67 360 3.67e-77 242
Msa0796280 AT3G17060.1 36.441 354 200 6 8 356 3 336 5.63e-74 233
Msa0796280 AT3G29090.1 40.836 311 164 7 58 357 5 306 3.44e-70 222
Msa0796280 AT5G26810.1 32.877 365 197 8 10 357 1 334 3.74e-60 197
Msa0796280 AT3G24130.1 35.294 306 178 4 60 356 34 328 6.03e-60 196
Msa0796280 AT2G47280.1 37.785 307 169 6 60 357 35 328 2.41e-59 195
Msa0796280 AT5G18990.1 34.314 306 181 4 60 356 29 323 1.94e-57 190
Msa0796280 AT3G05620.1 35.974 303 177 6 62 359 243 533 7.48e-53 183
Msa0796280 AT2G19150.1 35.294 306 181 4 58 357 39 333 2.24e-50 172
Msa0796280 AT5G09760.1 34.277 318 175 7 60 355 241 546 1.98e-49 174
Msa0796280 AT5G09760.2 34.277 318 175 7 60 355 267 572 2.52e-49 174
Msa0796280 AT3G05610.1 33.762 311 180 6 60 356 256 554 1.31e-48 174
Msa0796280 AT3G06830.1 29.474 380 227 10 8 359 194 560 4.03e-48 171
Msa0796280 AT5G27870.1 32.154 311 185 6 60 356 253 551 1.13e-45 166
Msa0796280 AT2G19150.2 38.645 251 138 3 58 302 39 279 3.00e-45 157
Msa0796280 AT5G49180.1 33.016 315 182 7 60 358 260 561 4.31e-45 163
Msa0796280 AT5G64640.1 31.790 324 186 8 60 359 289 601 5.44e-45 163
Msa0796280 AT4G02330.1 31.429 315 187 7 59 356 258 560 5.01e-44 160
Msa0796280 AT5G20860.2 33.123 317 179 10 60 359 230 530 9.94e-44 159
Msa0796280 AT2G26440.1 30.530 321 195 7 53 359 233 539 1.62e-43 158
Msa0796280 AT3G59010.1 33.007 306 181 8 62 359 231 520 5.22e-43 156
Msa0796280 AT3G43270.1 31.138 334 193 7 51 359 196 517 1.07e-41 153
Msa0796280 AT1G11590.1 30.573 314 191 7 60 359 216 516 2.88e-41 152
Msa0796280 AT3G27980.1 30.573 314 191 7 60 359 189 489 3.90e-41 151
Msa0796280 AT4G33220.2 29.129 333 200 7 51 359 74 394 4.38e-41 149
Msa0796280 AT4G02300.1 31.761 318 190 7 57 359 219 524 6.33e-41 151
Msa0796280 AT3G10720.2 30.519 308 185 7 70 360 313 608 8.22e-41 152
Msa0796280 AT1G02810.1 31.834 289 170 6 59 332 264 540 1.57e-40 150
Msa0796280 AT1G11580.1 29.206 315 196 6 60 359 247 549 1.82e-40 150
Msa0796280 AT1G11580.2 29.206 315 196 6 60 359 268 570 1.94e-40 150
Msa0796280 AT4G33220.1 29.129 333 200 7 51 359 195 515 2.29e-40 149
Msa0796280 AT3G14310.1 32.698 315 183 7 61 359 283 584 3.40e-40 150
Msa0796280 AT4G00190.1 30.938 320 194 9 55 359 159 466 3.96e-40 148
Msa0796280 AT1G23200.1 31.715 309 189 8 60 359 251 546 4.17e-40 149
Msa0796280 AT1G53840.1 29.677 310 197 5 60 359 281 579 8.20e-40 149
Msa0796280 AT3G10710.1 30.323 310 194 6 60 359 256 553 1.79e-39 147
Msa0796280 AT5G04970.1 31.068 309 182 8 70 360 318 613 6.11e-39 146
Msa0796280 AT1G53830.1 31.847 314 187 7 61 359 278 579 6.28e-39 146
Msa0796280 AT4G15980.1 33.439 314 184 8 60 359 392 694 7.58e-39 147
Msa0796280 AT4G15980.2 33.439 314 184 8 60 359 402 704 1.03e-38 147
Msa0796280 AT1G11370.1 29.323 266 163 5 46 299 34 286 2.38e-38 139
Msa0796280 AT2G47550.1 31.447 318 189 8 59 359 245 550 6.70e-38 143
Msa0796280 AT4G33230.1 28.857 350 217 9 26 356 259 595 4.72e-37 141
Msa0796280 AT5G04960.1 28.939 311 198 6 60 359 258 556 4.72e-37 140
Msa0796280 AT4G03930.1 28.981 314 196 7 60 359 216 516 5.60e-37 140
Msa0796280 AT5G51490.1 28.571 378 235 10 3 359 165 528 1.56e-36 139
Msa0796280 AT2G45220.1 30.599 317 188 10 54 356 203 501 2.17e-36 138
Msa0796280 AT5G53370.2 30.063 316 193 7 60 359 310 613 3.27e-36 139
Msa0796280 AT2G47030.1 32.867 286 163 6 65 334 282 554 3.79e-36 138
Msa0796280 AT5G53370.1 30.063 316 193 7 60 359 274 577 3.80e-36 138
Msa0796280 AT2G26450.1 27.476 313 201 6 61 359 303 603 1.30e-35 137
Msa0796280 AT3G49220.3 31.329 316 189 8 60 359 330 633 1.53e-35 137
Msa0796280 AT3G49220.1 31.329 316 189 8 60 359 285 588 1.66e-35 137
Msa0796280 AT4G02320.1 27.928 333 211 7 44 359 190 510 2.81e-35 135
Msa0796280 AT2G43050.1 30.072 276 175 5 90 359 245 508 3.43e-35 135
Msa0796280 AT3G14300.1 29.290 338 204 10 41 356 634 958 4.04e-35 137
Msa0796280 AT3G47400.1 30.133 375 215 12 14 359 230 586 8.44e-35 135
Msa0796280 AT3G10720.1 32.340 235 139 5 140 360 24 252 1.24e-34 128
Msa0796280 AT2G47040.1 32.155 283 169 8 65 334 289 561 2.13e-34 134
Msa0796280 AT3G60730.1 31.104 299 179 8 76 359 225 511 7.75e-34 131
Msa0796280 AT5G20860.1 33.333 249 137 8 113 344 251 487 2.91e-32 127
Msa0796280 AT3G62170.1 31.119 286 168 7 65 334 282 554 1.55e-31 125
Msa0796280 AT5G51500.1 27.979 386 223 13 3 356 167 529 1.01e-30 122
Msa0796280 AT1G44980.1 24.405 168 114 3 68 234 86 241 4.63e-11 62.8

Find 125 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTCATTGTATTGTTATC+TGG 0.184382 5_3:-8348205 None:intergenic
ACATTCTTTGCAATTGCTTT+TGG 0.241254 5_3:+8347985 Msa0796280:CDS
ACGAAGCTCTTCCTGATAAA+TGG 0.247766 5_3:-8350868 None:intergenic
TTTATAGTAAGAGGTATATT+TGG 0.263269 5_3:-8347749 None:intergenic
CACACGGTGGTTGGGATGAT+TGG 0.283922 5_3:+8350621 Msa0796280:CDS
TTAATTAGGACTGTGTTCTT+TGG 0.291942 5_3:+8350763 Msa0796280:intron
GTTATCTGGGACGGAATTTA+CGG 0.302481 5_3:-8348191 None:intergenic
GCGGTGGCGTTTCGCATATC+AGG 0.303188 5_3:+8349093 Msa0796280:CDS
GTGAAGCCTGTCTTCTCGTC+TGG 0.316654 5_3:-8350491 None:intergenic
AAACAGCACATCCATTTATC+AGG 0.324261 5_3:+8350857 Msa0796280:CDS
GTCAAGAATAATGCTATATA+TGG 0.331491 5_3:-8350928 None:intergenic
ACAAATAAGAATAGAATGTT+TGG 0.332719 5_3:-8347916 None:intergenic
CAATTCTCAACTCTCTATAA+TGG 0.365946 5_3:+8347946 Msa0796280:exon
ATCCAGCACTGATTTGAATA+AGG 0.375627 5_3:-8348228 None:intergenic
AGGTTCGATCCATTGGTTCT+TGG 0.385472 5_3:-8348104 None:intergenic
TCAATTGTAATAAATAATAA+AGG 0.389273 5_3:+8351140 Msa0796280:three_prime_UTR
CATTCATTGTATTGTTATCT+GGG 0.392536 5_3:-8348204 None:intergenic
TATACTAATATTTACCTTGA+AGG 0.396670 5_3:-8348651 None:intergenic
TGCAAAGAATATCACCTTCA+AGG 0.406243 5_3:+8348637 Msa0796280:CDS
CTTTGGAGTGTACAAATGTT+GGG 0.416963 5_3:+8350780 Msa0796280:CDS
TGCATCCCGGGCATTGGTGC+CGG 0.422340 5_3:-8349060 None:intergenic
CTATATGTAGGACGTGCAAT+GGG 0.422683 5_3:+8350548 Msa0796280:CDS
CGATGCAAGGTGACAGGCTC+AGG 0.427837 5_3:+8350521 Msa0796280:CDS
TTGCCTATCCTGTGCTGCTA+TGG 0.436377 5_3:-8350465 None:intergenic
ACAGCGCCGGCACCAATGCC+CGG 0.437990 5_3:+8349054 Msa0796280:CDS
TACCGACAGGTTCGATCCAT+TGG 0.440708 5_3:-8348111 None:intergenic
ATTCTTTGCAGAGAAATAGT+TGG 0.443410 5_3:-8348624 None:intergenic
AATCCTTGCATCCCGGGCAT+TGG 0.445967 5_3:-8349066 None:intergenic
TTATTATTTATTACAATTGA+AGG 0.446271 5_3:-8351137 None:intergenic
CATGGTGATTAAAATATTTG+TGG 0.447028 5_3:-8347840 None:intergenic
CGCTTGCAATCCTTGCATCC+CGG 0.449510 5_3:-8349073 None:intergenic
GAGAAATAACAGTGATTGAA+TGG 0.452312 5_3:+8348525 Msa0796280:CDS
TCAGGAAGAGCTTCGTCAAT+GGG 0.453223 5_3:+8350875 Msa0796280:CDS
TCCCCTTGAAATGTTATGTA+CGG 0.454195 5_3:-8348497 None:intergenic
TGCTGGTAGGCATTACTTCA+AGG 0.455937 5_3:+8349176 Msa0796280:CDS
GTCCTTATTCAAATCAGTGC+TGG 0.456134 5_3:+8348226 Msa0796280:CDS
TTCTCTGGCTGTGGCTTCCA+CGG 0.457319 5_3:+8349129 Msa0796280:CDS
GGGGACAAAGCATACTTCTC+TGG 0.459293 5_3:+8349114 Msa0796280:CDS
ACACGGTGGTTGGGATGATT+GGG 0.462473 5_3:+8350622 Msa0796280:CDS
AGGCAGTACGTGGTGTGTCA+TGG 0.467502 5_3:+8350815 Msa0796280:CDS
ACTTGCATGTTGTTAAATGC+AGG 0.468024 5_3:+8348013 Msa0796280:CDS
AAGCCGTACATAACATTTCA+AGG 0.471438 5_3:+8348494 Msa0796280:CDS
GTGTACAAATGTTGGGGACC+AGG 0.473026 5_3:+8350787 Msa0796280:CDS
TACTATATTTATTGAGAGCA+TGG 0.473289 5_3:-8347858 None:intergenic
GCTTGCAATCCTTGCATCCC+GGG 0.474029 5_3:-8349072 None:intergenic
CCACGTACTGCCTCTGCTCC+TGG 0.474972 5_3:-8350805 None:intergenic
CATTCAATAGCAACAAGGTT+CGG 0.477326 5_3:+8350440 Msa0796280:CDS
CATGATAGAGCTTGTGATCC+TGG 0.477605 5_3:+8348548 Msa0796280:CDS
TACAATGTGTGTAAGTAAAG+AGG 0.481245 5_3:-8347800 None:intergenic
TGAAGGTGGTGTGGTGATGA+TGG 0.481537 5_3:-8348057 None:intergenic
GTACGTAACTGTTGTCCGTT+GGG 0.482645 5_3:-8348572 None:intergenic
CATTGTATTGTTATCTGGGA+CGG 0.482901 5_3:-8348200 None:intergenic
TTCAAGGAATGCTACATTGA+GGG 0.487345 5_3:+8349192 Msa0796280:CDS
ATTGCACGTCCTACATATAG+TGG 0.491228 5_3:-8350545 None:intergenic
GTAATAACGGTTGATATTAA+CGG 0.494207 5_3:+8348139 Msa0796280:CDS
TTACGGCGTCTTGGACGGAC+TGG 0.502096 5_3:-8348174 None:intergenic
TGTCGGTAACCGTGTAATAA+CGG 0.503229 5_3:+8348126 Msa0796280:CDS
TCTTTGGAGTGTACAAATGT+TGG 0.504995 5_3:+8350779 Msa0796280:CDS
GGACGGAATTTACGGCGTCT+TGG 0.507752 5_3:-8348183 None:intergenic
ATCAGGAAGAGCTTCGTCAA+TGG 0.508046 5_3:+8350874 Msa0796280:CDS
GGAATTTACGGCGTCTTGGA+CGG 0.512824 5_3:-8348179 None:intergenic
TACATAACATTTCAAGGGGA+AGG 0.513154 5_3:+8348500 Msa0796280:CDS
AACTGTTGTCCGTTGGGACC+AGG 0.513658 5_3:-8348566 None:intergenic
TATAGTTGCACACGGTGGTT+GGG 0.519022 5_3:+8350613 Msa0796280:CDS
GTTATGTACGGCTTTGTCAC+GGG 0.520170 5_3:-8348485 None:intergenic
ATATAGTTGCACACGGTGGT+TGG 0.521044 5_3:+8350612 Msa0796280:CDS
GCACCAATGCCCGGGATGCA+AGG 0.523172 5_3:+8349063 Msa0796280:CDS
TTCGTACGATGCAAGGTGAC+AGG 0.524057 5_3:+8350515 Msa0796280:CDS
CAGCGCCGGCACCAATGCCC+GGG 0.525664 5_3:+8349055 Msa0796280:CDS
GGCAGTACGTGGTGTGTCAT+GGG 0.529160 5_3:+8350816 Msa0796280:CDS
TGAAGCCTGTCTTCTCGTCT+GGG 0.532273 5_3:-8350490 None:intergenic
ATTACAATTGAAGGAGGTCA+AGG 0.532533 5_3:-8351128 None:intergenic
TGTGTCATGGGCACGAGAGT+TGG 0.536786 5_3:+8350828 Msa0796280:CDS
ACTATATGTAGGACGTGCAA+TGG 0.542419 5_3:+8350547 Msa0796280:CDS
GTTCGGATCCATAGCAGCAC+AGG 0.542754 5_3:+8350457 Msa0796280:CDS
CGGTGGCGTTTCGCATATCA+GGG 0.544327 5_3:+8349094 Msa0796280:CDS
GTTATTACACGGTTACCGAC+AGG 0.545199 5_3:-8348124 None:intergenic
TGTAGTAGACAATGTGTTGA+AGG 0.549360 5_3:-8348074 None:intergenic
AAAGCATACTTCTCTGGCTG+TGG 0.552260 5_3:+8349120 Msa0796280:CDS
GATCCATAGCAGCACAGGAT+AGG 0.554332 5_3:+8350462 Msa0796280:CDS
TGTTATGTACGGCTTTGTCA+CGG 0.554628 5_3:-8348486 None:intergenic
CAATACCCAGACGAGAAGAC+AGG 0.556786 5_3:+8350485 Msa0796280:CDS
GCTTCGTCAATGGGAGACAT+TGG 0.566621 5_3:+8350884 Msa0796280:CDS
AACTTGATGGTGTAGAGAGA+AGG 0.569823 5_3:+8348454 Msa0796280:intron
TTTGGAGTGTACAAATGTTG+GGG 0.570214 5_3:+8350781 Msa0796280:CDS
AGTACGTAACTGTTGTCCGT+TGG 0.570235 5_3:-8348573 None:intergenic
CTTCAAGGAATGCTACATTG+AGG 0.571058 5_3:+8349191 Msa0796280:CDS
GACACACTTTGTGACGATGC+TGG 0.571568 5_3:+8349159 Msa0796280:CDS
CAAACTCATCCAAGAACCAA+TGG 0.573843 5_3:+8348095 Msa0796280:CDS
ATCATACCTTGTACATGGAT+CGG 0.576866 5_3:-8349242 None:intergenic
CTTCACATTCGTACGATGCA+AGG 0.588588 5_3:+8350508 Msa0796280:CDS
AATGAATCATACCTTGTACA+TGG 0.588920 5_3:-8349247 None:intergenic
GAGACATTGGATCGCACCTA+CGG 0.590531 5_3:+8350897 Msa0796280:CDS
AGCCGTACATAACATTTCAA+GGG 0.591308 5_3:+8348495 Msa0796280:CDS
ACATAACATTTCAAGGGGAA+GGG 0.591823 5_3:+8348501 Msa0796280:CDS
ACGGTTGATATTAACGGTGG+AGG 0.601250 5_3:+8348145 Msa0796280:CDS
TAATATCAACCGTTATTACA+CGG 0.601886 5_3:-8348135 None:intergenic
ATGTTGGGGACCAGGAGCAG+AGG 0.612194 5_3:+8350795 Msa0796280:CDS
GCTTGTGATCCTGGTCCCAA+CGG 0.619512 5_3:+8348557 Msa0796280:CDS
AAATGGCCGATCCATGTACA+AGG 0.619865 5_3:+8349236 Msa0796280:CDS
TTATTTATTACAATTGAAGG+AGG 0.623922 5_3:-8351134 None:intergenic
TGCAAAGAATGTAAAAGCGT+AGG 0.624425 5_3:-8347974 None:intergenic
TTGATGGTGTAGAGAGAAGG+TGG 0.630741 5_3:+8348457 Msa0796280:intron
CACTTTGTGACGATGCTGGT+AGG 0.638179 5_3:+8349163 Msa0796280:CDS
GCCGTACATAACATTTCAAG+GGG 0.638381 5_3:+8348496 Msa0796280:CDS
ATATATGGCTAAGCATCCGT+AGG 0.641001 5_3:-8350913 None:intergenic
GAGCATGTAGAATACAGCGC+CGG 0.642880 5_3:+8349041 Msa0796280:intron
AAAGAGGAAGAACAAATGAG+AGG 0.645359 5_3:-8347784 None:intergenic
CCAGGAGCAGAGGCAGTACG+TGG 0.646245 5_3:+8350805 Msa0796280:CDS
ACAATGTGTTGAAGGTGGTG+TGG 0.653306 5_3:-8348066 None:intergenic
CGGGATGCAAGGATTGCAAG+CGG 0.655175 5_3:+8349074 Msa0796280:CDS
AACCAATGGATCGAACCTGT+CGG 0.668325 5_3:+8348109 Msa0796280:CDS
GATGCAAGGATTGCAAGCGG+TGG 0.671605 5_3:+8349077 Msa0796280:CDS
GGCTCAGGTCCACTATATGT+AGG 0.671680 5_3:+8350536 Msa0796280:CDS
AGCTGCATTCAATAGCAACA+AGG 0.679636 5_3:+8350435 Msa0796280:CDS
AGTAGACAATGTGTTGAAGG+TGG 0.685800 5_3:-8348071 None:intergenic
TTTGATGATATAGTTGCACA+CGG 0.696006 5_3:+8350605 Msa0796280:CDS
ATAACGGTTGATATTAACGG+TGG 0.698549 5_3:+8348142 Msa0796280:CDS
ACAACAGTCTCTCCGCAGAG+AGG 0.708082 5_3:-8351071 None:intergenic
TAATATAGTTATCCTCTCTG+CGG 0.714189 5_3:+8351059 Msa0796280:three_prime_UTR
GGTGGCGTTTCGCATATCAG+GGG 0.723699 5_3:+8349095 Msa0796280:CDS
TATATGTAGGACGTGCAATG+GGG 0.736057 5_3:+8350549 Msa0796280:CDS
ATGGTGTAGAGAGAAGGTGG+TGG 0.744314 5_3:+8348460 Msa0796280:intron
AAAGTGTGTCTTGTGCACCG+TGG 0.789181 5_3:-8349146 None:intergenic
GATGATATAGTTGCACACGG+TGG 0.832583 5_3:+8350608 Msa0796280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAAAAATAATAAAA+AGG - chr5_3:8349685-8349704 None:intergenic 0.0%
!! TATATTTACAATAACAATAT+TGG - chr5_3:8348783-8348802 None:intergenic 10.0%
!!! TTTTAATAATAGTACTTAAT+AGG + chr5_3:8349695-8349714 Msa0796280:intron 10.0%
!!! TATTTTGAAACAATTTTTTT+TGG - chr5_3:8350033-8350052 None:intergenic 10.0%
!! TTATTATTTATTACAATTGA+AGG - chr5_3:8351140-8351159 None:intergenic 10.0%
!! TCAATTGTAATAAATAATAA+AGG + chr5_3:8351140-8351159 Msa0796280:three_prime_UTR 10.0%
!! GTATTAATTCTTAATATTGT+TGG + chr5_3:8348377-8348396 Msa0796280:intron 15.0%
!! TTTGAATGAAAGTAATAATT+TGG + chr5_3:8348420-8348439 Msa0796280:intron 15.0%
!! TAGTTTATTTATCTCAATTA+TGG + chr5_3:8349296-8349315 Msa0796280:intron 15.0%
!!! ATGATTATTTTATTGAAAAG+TGG + chr5_3:8349815-8349834 Msa0796280:intron 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr5_3:8350160-8350179 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr5_3:8350159-8350178 Msa0796280:intron 15.0%
!! TAATAAAAACATCTCTTAAT+TGG + chr5_3:8350395-8350414 Msa0796280:intron 15.0%
!!! TTTATAGTAAGAGGTATATT+TGG - chr5_3:8347752-8347771 None:intergenic 20.0%
!!! TTTGTGTATTTTATAGTAAG+AGG - chr5_3:8347761-8347780 None:intergenic 20.0%
!! ACAAATAAGAATAGAATGTT+TGG - chr5_3:8347919-8347938 None:intergenic 20.0%
!! CTTAATTAATGCTAAAGAAA+AGG - chr5_3:8348327-8348346 None:intergenic 20.0%
!! TATACTAATATTTACCTTGA+AGG - chr5_3:8348654-8348673 None:intergenic 20.0%
!! TTTACAATAACAATATTGGT+AGG - chr5_3:8348779-8348798 None:intergenic 20.0%
!! TAAGCTAAAGAAGTTAAAAA+AGG - chr5_3:8348946-8348965 None:intergenic 20.0%
!! ATTTCCAAAAATGAAATCAA+TGG - chr5_3:8349220-8349239 None:intergenic 20.0%
!!! ATTGATTTCATTTTTGGAAA+TGG + chr5_3:8349219-8349238 Msa0796280:CDS 20.0%
!! TAACATCAAAATTCATTAAG+TGG + chr5_3:8349411-8349430 Msa0796280:intron 20.0%
!! TCCAATGTAGAAAAAAATTA+GGG - chr5_3:8349862-8349881 None:intergenic 20.0%
!! GTTCAACAAAAAAAAAAAAC+AGG - chr5_3:8349961-8349980 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr5_3:8350073-8350092 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr5_3:8350150-8350169 Msa0796280:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr5_3:8350193-8350212 None:intergenic 20.0%
!! ATTTGTGGATAAACTTAATT+AGG + chr5_3:8350749-8350768 Msa0796280:intron 20.0%
!!! ATTTTTGTTCTTTTCAACAT+AGG + chr5_3:8351022-8351041 Msa0796280:three_prime_UTR 20.0%
!! TTATTTATTACAATTGAAGG+AGG - chr5_3:8351137-8351156 None:intergenic 20.0%
! CATGGTGATTAAAATATTTG+TGG - chr5_3:8347843-8347862 None:intergenic 25.0%
! TACTATATTTATTGAGAGCA+TGG - chr5_3:8347861-8347880 None:intergenic 25.0%
! TAATATCAACCGTTATTACA+CGG - chr5_3:8348138-8348157 None:intergenic 25.0%
!! GTAATAACGGTTGATATTAA+CGG + chr5_3:8348139-8348158 Msa0796280:CDS 25.0%
! CATTCATTGTATTGTTATCT+GGG - chr5_3:8348207-8348226 None:intergenic 25.0%
! ACATTCATTGTATTGTTATC+TGG - chr5_3:8348208-8348227 None:intergenic 25.0%
! GAATGAAAGTAATAATTTGG+TGG + chr5_3:8348423-8348442 Msa0796280:intron 25.0%
! TAACTGATAATTAACCTCAA+TGG + chr5_3:8348712-8348731 Msa0796280:intron 25.0%
! AACTGATAATTAACCTCAAT+GGG + chr5_3:8348713-8348732 Msa0796280:intron 25.0%
!! TTTTACCTAAGTTAAAAAGC+TGG - chr5_3:8348969-8348988 None:intergenic 25.0%
!! TATTTTATTGAAAAGTGGTG+TGG + chr5_3:8349820-8349839 Msa0796280:intron 25.0%
!! ATTTTATTGAAAAGTGGTGT+GGG + chr5_3:8349821-8349840 Msa0796280:intron 25.0%
! CCAATGTAGAAAAAAATTAG+GGG - chr5_3:8349861-8349880 None:intergenic 25.0%
! CTCCAATGTAGAAAAAAATT+AGG - chr5_3:8349863-8349882 None:intergenic 25.0%
!!! CTAATTTTTTTCTACATTGG+AGG + chr5_3:8349861-8349880 Msa0796280:intron 25.0%
!! ATGGAGTAGTTTGAATTTTA+GGG - chr5_3:8350371-8350390 None:intergenic 25.0%
!!! GAGATGTTTTTATTAAGAGA+TGG - chr5_3:8350390-8350409 None:intergenic 25.0%
!! TTTTATCCTTCTTATCGTTT+TGG + chr5_3:8350674-8350693 Msa0796280:intron 25.0%
! TAAAATTCAGAAAATCAGTG+TGG - chr5_3:8350717-8350736 None:intergenic 25.0%
! GTCAAGAATAATGCTATATA+TGG - chr5_3:8350931-8350950 None:intergenic 25.0%
!! TTCCTTTAAAAATGTGAGTA+GGG - chr5_3:8350956-8350975 None:intergenic 25.0%
!! TTTCCTTTAAAAATGTGAGT+AGG - chr5_3:8350957-8350976 None:intergenic 25.0%
!! ATATGACAACTCTTTTGTAT+GGG - chr5_3:8351004-8351023 None:intergenic 25.0%
!! AATATGACAACTCTTTTGTA+TGG - chr5_3:8351005-8351024 None:intergenic 25.0%
TACAATGTGTGTAAGTAAAG+AGG - chr5_3:8347803-8347822 None:intergenic 30.0%
CAATTCTCAACTCTCTATAA+TGG + chr5_3:8347946-8347965 Msa0796280:exon 30.0%
! ACATTCTTTGCAATTGCTTT+TGG + chr5_3:8347985-8348004 Msa0796280:CDS 30.0%
! TAACTTGCACCATTATTTAG+TGG + chr5_3:8348290-8348309 Msa0796280:intron 30.0%
CATGTAACACCACTAAATAA+TGG - chr5_3:8348302-8348321 None:intergenic 30.0%
GAGAAATAACAGTGATTGAA+TGG + chr5_3:8348525-8348544 Msa0796280:CDS 30.0%
ATTCTTTGCAGAGAAATAGT+TGG - chr5_3:8348627-8348646 None:intergenic 30.0%
CTTTCATTTCAATGTAAGAG+TGG + chr5_3:8348896-8348915 Msa0796280:intron 30.0%
AATGAATCATACCTTGTACA+TGG - chr5_3:8349250-8349269 None:intergenic 30.0%
TGGCAACATTACCTTAATAA+TGG + chr5_3:8349316-8349335 Msa0796280:intron 30.0%
GGCAACATTACCTTAATAAT+GGG + chr5_3:8349317-8349336 Msa0796280:intron 30.0%
CTTTAACGAACCCATTATTA+AGG - chr5_3:8349330-8349349 None:intergenic 30.0%
AGTGTGACAGAGAAATAAAA+AGG - chr5_3:8349376-8349395 None:intergenic 30.0%
AAAACATTGAGATGCGTAAA+GGG + chr5_3:8349439-8349458 Msa0796280:intron 30.0%
TTGCCAAGTGTTTATGAATA+TGG + chr5_3:8349477-8349496 Msa0796280:intron 30.0%
AGTCCATATTCATAAACACT+TGG - chr5_3:8349483-8349502 None:intergenic 30.0%
ACATATATTAGTTCAATGCC+TGG - chr5_3:8349579-8349598 None:intergenic 30.0%
! TTTTGATAGATGATCTCCAT+TGG - chr5_3:8349733-8349752 None:intergenic 30.0%
AATGGAGATCATCTATCAAA+AGG + chr5_3:8349732-8349751 Msa0796280:intron 30.0%
! TTTTATTGAAAAGTGGTGTG+GGG + chr5_3:8349822-8349841 Msa0796280:intron 30.0%
!! AAAATTAGGGGTATCTTAAG+TGG - chr5_3:8349849-8349868 None:intergenic 30.0%
!!! CCCCTAATTTTTTTCTACAT+TGG + chr5_3:8349858-8349877 Msa0796280:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr5_3:8350241-8350260 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr5_3:8350242-8350261 Msa0796280:intron 30.0%
! GATGGAGTAGTTTGAATTTT+AGG - chr5_3:8350372-8350391 None:intergenic 30.0%
! TTTGATGATATAGTTGCACA+CGG + chr5_3:8350605-8350624 Msa0796280:CDS 30.0%
!! TTAACTGTCTTGTTGATTTG+TGG + chr5_3:8350734-8350753 Msa0796280:intron 30.0%
TTAATTAGGACTGTGTTCTT+TGG + chr5_3:8350763-8350782 Msa0796280:intron 30.0%
! TTCCCTACTCACATTTTTAA+AGG + chr5_3:8350951-8350970 Msa0796280:three_prime_UTR 30.0%
TAATATAGTTATCCTCTCTG+CGG + chr5_3:8351059-8351078 Msa0796280:three_prime_UTR 30.0%
AAAGAGGAAGAACAAATGAG+AGG - chr5_3:8347787-8347806 None:intergenic 35.0%
! TGCAAAGAATGTAAAAGCGT+AGG - chr5_3:8347977-8347996 None:intergenic 35.0%
ACTTGCATGTTGTTAAATGC+AGG + chr5_3:8348013-8348032 Msa0796280:CDS 35.0%
TGTAGTAGACAATGTGTTGA+AGG - chr5_3:8348077-8348096 None:intergenic 35.0%
! ATAACGGTTGATATTAACGG+TGG + chr5_3:8348142-8348161 Msa0796280:CDS 35.0%
CATTGTATTGTTATCTGGGA+CGG - chr5_3:8348203-8348222 None:intergenic 35.0%
!! ATCCAGCACTGATTTGAATA+AGG - chr5_3:8348231-8348250 None:intergenic 35.0%
AAGCCGTACATAACATTTCA+AGG + chr5_3:8348494-8348513 Msa0796280:CDS 35.0%
AGCCGTACATAACATTTCAA+GGG + chr5_3:8348495-8348514 Msa0796280:CDS 35.0%
TCCCCTTGAAATGTTATGTA+CGG - chr5_3:8348500-8348519 None:intergenic 35.0%
TACATAACATTTCAAGGGGA+AGG + chr5_3:8348500-8348519 Msa0796280:CDS 35.0%
ACATAACATTTCAAGGGGAA+GGG + chr5_3:8348501-8348520 Msa0796280:CDS 35.0%
TGCAAAGAATATCACCTTCA+AGG + chr5_3:8348637-8348656 Msa0796280:CDS 35.0%
ATTAACCTCAATGGGAACAA+AGG + chr5_3:8348721-8348740 Msa0796280:intron 35.0%
TTAACCTCAATGGGAACAAA+GGG + chr5_3:8348722-8348741 Msa0796280:intron 35.0%
!!! GCTTACCAGCTTTTTAACTT+AGG + chr5_3:8348961-8348980 Msa0796280:intron 35.0%
TTCAAGGAATGCTACATTGA+GGG + chr5_3:8349192-8349211 Msa0796280:CDS 35.0%
!!! GGCTCCATTGATTTCATTTT+TGG + chr5_3:8349213-8349232 Msa0796280:CDS 35.0%
ATCATACCTTGTACATGGAT+CGG - chr5_3:8349245-8349264 None:intergenic 35.0%
! CTTTACGCATCTCAATGTTT+TGG - chr5_3:8349440-8349459 None:intergenic 35.0%
CAAAACATTGAGATGCGTAA+AGG + chr5_3:8349438-8349457 Msa0796280:intron 35.0%
! GGATGCTCTAATGTTCTTTT+GGG - chr5_3:8349610-8349629 None:intergenic 35.0%
! TGGATGCTCTAATGTTCTTT+TGG - chr5_3:8349611-8349630 None:intergenic 35.0%
! CTCACATTTGAGGTCTTAAA+CGG + chr5_3:8349640-8349659 Msa0796280:intron 35.0%
! TCACATTTGAGGTCTTAAAC+GGG + chr5_3:8349641-8349660 Msa0796280:intron 35.0%
AAAAGGTGATGTGTCTATGT+GGG - chr5_3:8349668-8349687 None:intergenic 35.0%
AAAAAGGTGATGTGTCTATG+TGG - chr5_3:8349669-8349688 None:intergenic 35.0%
! ACTCTTTACCATTTAAGACC+CGG - chr5_3:8349900-8349919 None:intergenic 35.0%
!!! GACACTCATTTTGAAACGAA+GGG - chr5_3:8350003-8350022 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr5_3:8350107-8350126 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr5_3:8350111-8350130 None:intergenic 35.0%
TCTCTTAATTGGAGATTCTC+AGG + chr5_3:8350406-8350425 Msa0796280:intron 35.0%
CATTCAATAGCAACAAGGTT+CGG + chr5_3:8350440-8350459 Msa0796280:CDS 35.0%
!!! ACTTGTTTTTGTTGTTAGCG+TGG - chr5_3:8350649-8350668 None:intergenic 35.0%
TCATCACCAAAACGATAAGA+AGG - chr5_3:8350683-8350702 None:intergenic 35.0%
!! TCTTTGGAGTGTACAAATGT+TGG + chr5_3:8350779-8350798 Msa0796280:CDS 35.0%
!! CTTTGGAGTGTACAAATGTT+GGG + chr5_3:8350780-8350799 Msa0796280:CDS 35.0%
! TTTGGAGTGTACAAATGTTG+GGG + chr5_3:8350781-8350800 Msa0796280:CDS 35.0%
AAACAGCACATCCATTTATC+AGG + chr5_3:8350857-8350876 Msa0796280:CDS 35.0%
ATTACAATTGAAGGAGGTCA+AGG - chr5_3:8351131-8351150 None:intergenic 35.0%
AGTAGACAATGTGTTGAAGG+TGG - chr5_3:8348074-8348093 None:intergenic 40.0%
CAAACTCATCCAAGAACCAA+TGG + chr5_3:8348095-8348114 Msa0796280:CDS 40.0%
TGTCGGTAACCGTGTAATAA+CGG + chr5_3:8348126-8348145 Msa0796280:CDS 40.0%
! GTTATCTGGGACGGAATTTA+CGG - chr5_3:8348194-8348213 None:intergenic 40.0%
GTCCTTATTCAAATCAGTGC+TGG + chr5_3:8348226-8348245 Msa0796280:CDS 40.0%
! AGTGCTGGATTCTACAAGTA+TGG + chr5_3:8348241-8348260 Msa0796280:intron 40.0%
GGTGGTGCATATAAACTTGA+TGG + chr5_3:8348441-8348460 Msa0796280:intron 40.0%
!! AACTTGATGGTGTAGAGAGA+AGG + chr5_3:8348454-8348473 Msa0796280:intron 40.0%
! TGTTATGTACGGCTTTGTCA+CGG - chr5_3:8348489-8348508 None:intergenic 40.0%
GCCGTACATAACATTTCAAG+GGG + chr5_3:8348496-8348515 Msa0796280:CDS 40.0%
CTTCAAGGAATGCTACATTG+AGG + chr5_3:8349191-8349210 Msa0796280:CDS 40.0%
TGCGTAAAGGGATACTAGTA+AGG + chr5_3:8349451-8349470 Msa0796280:intron 40.0%
! CTACCACGTTTTTAATGACC+AGG + chr5_3:8349558-8349577 Msa0796280:intron 40.0%
ATGCCTGGTCATTAAAAACG+TGG - chr5_3:8349564-8349583 None:intergenic 40.0%
TCAAATGTGAGTCTCGATTG+TGG - chr5_3:8349631-8349650 None:intergenic 40.0%
ACAATCGAGACTCACATTTG+AGG + chr5_3:8349630-8349649 Msa0796280:intron 40.0%
ATAGATGATCTCCATTGGAG+AGG - chr5_3:8349728-8349747 None:intergenic 40.0%
!! CTACATTGGAGGTACCTATT+AGG + chr5_3:8349872-8349891 Msa0796280:intron 40.0%
! TTTAAGACCCGGTACCTAAT+AGG - chr5_3:8349889-8349908 None:intergenic 40.0%
!! ATTAGGTACCGGGTCTTAAA+TGG + chr5_3:8349889-8349908 Msa0796280:intron 40.0%
GGGTCTTAAATGGTAAAGAG+TGG + chr5_3:8349899-8349918 Msa0796280:intron 40.0%
!!! CGACACTCATTTTGAAACGA+AGG - chr5_3:8350004-8350023 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr5_3:8350108-8350127 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr5_3:8350246-8350265 Msa0796280:intron 40.0%
AGCTGCATTCAATAGCAACA+AGG + chr5_3:8350435-8350454 Msa0796280:CDS 40.0%
ATTGCACGTCCTACATATAG+TGG - chr5_3:8350548-8350567 None:intergenic 40.0%
ACTATATGTAGGACGTGCAA+TGG + chr5_3:8350547-8350566 Msa0796280:CDS 40.0%
CTATATGTAGGACGTGCAAT+GGG + chr5_3:8350548-8350567 Msa0796280:CDS 40.0%
TATATGTAGGACGTGCAATG+GGG + chr5_3:8350549-8350568 Msa0796280:CDS 40.0%
ACGAAGCTCTTCCTGATAAA+TGG - chr5_3:8350871-8350890 None:intergenic 40.0%
ATATATGGCTAAGCATCCGT+AGG - chr5_3:8350916-8350935 None:intergenic 40.0%
ACAATGTGTTGAAGGTGGTG+TGG - chr5_3:8348069-8348088 None:intergenic 45.0%
!! AGGTTCGATCCATTGGTTCT+TGG - chr5_3:8348107-8348126 None:intergenic 45.0%
AACCAATGGATCGAACCTGT+CGG + chr5_3:8348109-8348128 Msa0796280:CDS 45.0%
GTTATTACACGGTTACCGAC+AGG - chr5_3:8348127-8348146 None:intergenic 45.0%
! ACGGTTGATATTAACGGTGG+AGG + chr5_3:8348145-8348164 Msa0796280:CDS 45.0%
!! TTGATGGTGTAGAGAGAAGG+TGG + chr5_3:8348457-8348476 Msa0796280:intron 45.0%
! GTTATGTACGGCTTTGTCAC+GGG - chr5_3:8348488-8348507 None:intergenic 45.0%
CATGATAGAGCTTGTGATCC+TGG + chr5_3:8348548-8348567 Msa0796280:CDS 45.0%
GTACGTAACTGTTGTCCGTT+GGG - chr5_3:8348575-8348594 None:intergenic 45.0%
AGTACGTAACTGTTGTCCGT+TGG - chr5_3:8348576-8348595 None:intergenic 45.0%
AAAGCATACTTCTCTGGCTG+TGG + chr5_3:8349120-8349139 Msa0796280:CDS 45.0%
TGCTGGTAGGCATTACTTCA+AGG + chr5_3:8349176-8349195 Msa0796280:CDS 45.0%
AAATGGCCGATCCATGTACA+AGG + chr5_3:8349236-8349255 Msa0796280:CDS 45.0%
TAGGTACTCAACCTCTCCAA+TGG + chr5_3:8349714-8349733 Msa0796280:intron 45.0%
!! TGGAGGTACCTATTAGGTAC+CGG + chr5_3:8349878-8349897 Msa0796280:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr5_3:8350245-8350264 Msa0796280:intron 45.0%
CTTCACATTCGTACGATGCA+AGG + chr5_3:8350508-8350527 Msa0796280:CDS 45.0%
GATGATATAGTTGCACACGG+TGG + chr5_3:8350608-8350627 Msa0796280:CDS 45.0%
ATATAGTTGCACACGGTGGT+TGG + chr5_3:8350612-8350631 Msa0796280:CDS 45.0%
TATAGTTGCACACGGTGGTT+GGG + chr5_3:8350613-8350632 Msa0796280:CDS 45.0%
ATCAGGAAGAGCTTCGTCAA+TGG + chr5_3:8350874-8350893 Msa0796280:CDS 45.0%
TCAGGAAGAGCTTCGTCAAT+GGG + chr5_3:8350875-8350894 Msa0796280:CDS 45.0%
! TGAAGGTGGTGTGGTGATGA+TGG - chr5_3:8348060-8348079 None:intergenic 50.0%
TACCGACAGGTTCGATCCAT+TGG - chr5_3:8348114-8348133 None:intergenic 50.0%
GGAATTTACGGCGTCTTGGA+CGG - chr5_3:8348182-8348201 None:intergenic 50.0%
ATGGTGTAGAGAGAAGGTGG+TGG + chr5_3:8348460-8348479 Msa0796280:intron 50.0%
ACCTCAATGGGAACAAAGGG+AGG + chr5_3:8348725-8348744 Msa0796280:intron 50.0%
TCCTCCCTTTGTTCCCATTG+AGG - chr5_3:8348729-8348748 None:intergenic 50.0%
CAATGGGAACAAAGGGAGGA+AGG + chr5_3:8348729-8348748 Msa0796280:intron 50.0%
GAGCATGTAGAATACAGCGC+CGG + chr5_3:8349041-8349060 Msa0796280:intron 50.0%
GGGGACAAAGCATACTTCTC+TGG + chr5_3:8349114-8349133 Msa0796280:CDS 50.0%
AAAGTGTGTCTTGTGCACCG+TGG - chr5_3:8349149-8349168 None:intergenic 50.0%
GACACACTTTGTGACGATGC+TGG + chr5_3:8349159-8349178 Msa0796280:CDS 50.0%
CACTTTGTGACGATGCTGGT+AGG + chr5_3:8349163-8349182 Msa0796280:CDS 50.0%
!! GGAGGTACCTATTAGGTACC+GGG + chr5_3:8349879-8349898 Msa0796280:intron 50.0%
GATCCATAGCAGCACAGGAT+AGG + chr5_3:8350462-8350481 Msa0796280:CDS 50.0%
! TTGCCTATCCTGTGCTGCTA+TGG - chr5_3:8350468-8350487 None:intergenic 50.0%
CAATACCCAGACGAGAAGAC+AGG + chr5_3:8350485-8350504 Msa0796280:CDS 50.0%
TGAAGCCTGTCTTCTCGTCT+GGG - chr5_3:8350493-8350512 None:intergenic 50.0%
TTCGTACGATGCAAGGTGAC+AGG + chr5_3:8350515-8350534 Msa0796280:CDS 50.0%
GGCTCAGGTCCACTATATGT+AGG + chr5_3:8350536-8350555 Msa0796280:CDS 50.0%
ACACGGTGGTTGGGATGATT+GGG + chr5_3:8350622-8350641 Msa0796280:CDS 50.0%
GTGTACAAATGTTGGGGACC+AGG + chr5_3:8350787-8350806 Msa0796280:CDS 50.0%
GCTTCGTCAATGGGAGACAT+TGG + chr5_3:8350884-8350903 Msa0796280:CDS 50.0%
GAGACATTGGATCGCACCTA+CGG + chr5_3:8350897-8350916 Msa0796280:CDS 50.0%
GGACGGAATTTACGGCGTCT+TGG - chr5_3:8348186-8348205 None:intergenic 55.0%
GCTTGTGATCCTGGTCCCAA+CGG + chr5_3:8348557-8348576 Msa0796280:CDS 55.0%
AACTGTTGTCCGTTGGGACC+AGG - chr5_3:8348569-8348588 None:intergenic 55.0%
AATCCTTGCATCCCGGGCAT+TGG - chr5_3:8349069-8349088 None:intergenic 55.0%
GCTTGCAATCCTTGCATCCC+GGG - chr5_3:8349075-8349094 None:intergenic 55.0%
CGCTTGCAATCCTTGCATCC+CGG - chr5_3:8349076-8349095 None:intergenic 55.0%
CGGGATGCAAGGATTGCAAG+CGG + chr5_3:8349074-8349093 Msa0796280:CDS 55.0%
GATGCAAGGATTGCAAGCGG+TGG + chr5_3:8349077-8349096 Msa0796280:CDS 55.0%
CGGTGGCGTTTCGCATATCA+GGG + chr5_3:8349094-8349113 Msa0796280:CDS 55.0%
GGTGGCGTTTCGCATATCAG+GGG + chr5_3:8349095-8349114 Msa0796280:CDS 55.0%
TTCTCTGGCTGTGGCTTCCA+CGG + chr5_3:8349129-8349148 Msa0796280:CDS 55.0%
GTTCGGATCCATAGCAGCAC+AGG + chr5_3:8350457-8350476 Msa0796280:CDS 55.0%
GTGAAGCCTGTCTTCTCGTC+TGG - chr5_3:8350494-8350513 None:intergenic 55.0%
CACACGGTGGTTGGGATGAT+TGG + chr5_3:8350621-8350640 Msa0796280:CDS 55.0%
AGGCAGTACGTGGTGTGTCA+TGG + chr5_3:8350815-8350834 Msa0796280:CDS 55.0%
GGCAGTACGTGGTGTGTCAT+GGG + chr5_3:8350816-8350835 Msa0796280:CDS 55.0%
TGTGTCATGGGCACGAGAGT+TGG + chr5_3:8350828-8350847 Msa0796280:CDS 55.0%
ACAACAGTCTCTCCGCAGAG+AGG - chr5_3:8351074-8351093 None:intergenic 55.0%
TTACGGCGTCTTGGACGGAC+TGG - chr5_3:8348177-8348196 None:intergenic 60.0%
GCGGTGGCGTTTCGCATATC+AGG + chr5_3:8349093-8349112 Msa0796280:CDS 60.0%
CGATGCAAGGTGACAGGCTC+AGG + chr5_3:8350521-8350540 Msa0796280:CDS 60.0%
ATGTTGGGGACCAGGAGCAG+AGG + chr5_3:8350795-8350814 Msa0796280:CDS 60.0%
!! TGCATCCCGGGCATTGGTGC+CGG - chr5_3:8349063-8349082 None:intergenic 65.0%
GCACCAATGCCCGGGATGCA+AGG + chr5_3:8349063-8349082 Msa0796280:CDS 65.0%
CCACGTACTGCCTCTGCTCC+TGG - chr5_3:8350808-8350827 None:intergenic 65.0%
CCAGGAGCAGAGGCAGTACG+TGG + chr5_3:8350805-8350824 Msa0796280:CDS 65.0%
!! ACAGCGCCGGCACCAATGCC+CGG + chr5_3:8349054-8349073 Msa0796280:CDS 70.0%
!! CAGCGCCGGCACCAATGCCC+GGG + chr5_3:8349055-8349074 Msa0796280:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 8347748 8351192 8347748 ID=Msa0796280;Name=Msa0796280
chr5_3 mRNA 8347748 8351192 8347748 ID=Msa0796280-mRNA-1;Parent=Msa0796280;Name=Msa0796280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=217|1|1|1|1|1|5|265|361
chr5_3 exon 8347748 8348257 8347748 ID=Msa0796280-mRNA-1:exon:3411;Parent=Msa0796280-mRNA-1
chr5_3 exon 8348469 8348658 8348469 ID=Msa0796280-mRNA-1:exon:3412;Parent=Msa0796280-mRNA-1
chr5_3 exon 8349051 8349257 8349051 ID=Msa0796280-mRNA-1:exon:3413;Parent=Msa0796280-mRNA-1
chr5_3 exon 8350428 8350666 8350428 ID=Msa0796280-mRNA-1:exon:3414;Parent=Msa0796280-mRNA-1
chr5_3 exon 8350771 8351192 8350771 ID=Msa0796280-mRNA-1:exon:3415;Parent=Msa0796280-mRNA-1
chr5_3 five_prime_UTR 8347748 8347964 8347748 ID=Msa0796280-mRNA-1:five_prime_utr;Parent=Msa0796280-mRNA-1
chr5_3 CDS 8347965 8348257 8347965 ID=Msa0796280-mRNA-1:cds;Parent=Msa0796280-mRNA-1
chr5_3 CDS 8348469 8348658 8348469 ID=Msa0796280-mRNA-1:cds;Parent=Msa0796280-mRNA-1
chr5_3 CDS 8349051 8349257 8349051 ID=Msa0796280-mRNA-1:cds;Parent=Msa0796280-mRNA-1
chr5_3 CDS 8350428 8350666 8350428 ID=Msa0796280-mRNA-1:cds;Parent=Msa0796280-mRNA-1
chr5_3 CDS 8350771 8350927 8350771 ID=Msa0796280-mRNA-1:cds;Parent=Msa0796280-mRNA-1
chr5_3 three_prime_UTR 8350928 8351192 8350928 ID=Msa0796280-mRNA-1:three_prime_utr;Parent=Msa0796280-mRNA-1
Gene Sequence

>Msa0796280

ATGGATACACCTACGCTTTTACATTCTTTGCAATTGCTTTTGGTTTTCACTTGCATGTTGTTAAATGCAGGAATAGTGACACTTGCTGCACGCCATCATCACCACACCACCTTCAACACATTGTCTACTACAAACTCATCCAAGAACCAATGGATCGAACCTGTCGGTAACCGTGTAATAACGGTTGATATTAACGGTGGAGGTCAGTTCCAGTCCGTCCAAGACGCCGTAAATTCCGTCCCAGATAACAATACAATGAATGTCCTTATTCAAATCAGTGCTGGATTCTACAAAGAGAAGGTGGTGGTTCCCGTGACAAAGCCGTACATAACATTTCAAGGGGAAGGGAGAGAAATAACAGTGATTGAATGGCATGATAGAGCTTGTGATCCTGGTCCCAACGGACAACAGTTACGTACTTATAGAACTGCTTCTGTTACTGTCTTTGCCAACTATTTCTCTGCAAAGAATATCACCTTCAAGAATACAGCGCCGGCACCAATGCCCGGGATGCAAGGATTGCAAGCGGTGGCGTTTCGCATATCAGGGGACAAAGCATACTTCTCTGGCTGTGGCTTCCACGGTGCACAAGACACACTTTGTGACGATGCTGGTAGGCATTACTTCAAGGAATGCTACATTGAGGGCTCCATTGATTTCATTTTTGGAAATGGCCGATCCATGTACAAGGATTGTGAGCTGCATTCAATAGCAACAAGGTTCGGATCCATAGCAGCACAGGATAGGCAATACCCAGACGAGAAGACAGGCTTCACATTCGTACGATGCAAGGTGACAGGCTCAGGTCCACTATATGTAGGACGTGCAATGGGGCAATACTCAAGAATAGTTTATGCATATACATACTTTGATGATATAGTTGCACACGGTGGTTGGGATGATTGGGACCACGCTAACAACAAAAACAAGACTGTGTTCTTTGGAGTGTACAAATGTTGGGGACCAGGAGCAGAGGCAGTACGTGGTGTGTCATGGGCACGAGAGTTGGATTTCGAAACAGCACATCCATTTATCAGGAAGAGCTTCGTCAATGGGAGACATTGGATCGCACCTACGGATGCTTAG
Protein sequence

>Msa0796280

MDTPTLLHSLQLLLVFTCMLLNAGIVTLAARHHHHTTFNTLSTTNSSKNQWIEPVGNRVITVDINGGGQFQSVQDAVNSVPDNNTMNVLIQISAGFYKEKVVVPVTKPYITFQGEGREITVIEWHDRACDPGPNGQQLRTYRTASVTVFANYFSAKNITFKNTAPAPMPGMQGLQAVAFRISGDKAYFSGCGFHGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRQYPDEKTGFTFVRCKVTGSGPLYVGRAMGQYSRIVYAYTYFDDIVAHGGWDDWDHANNKNKTVFFGVYKCWGPGAEAVRGVSWARELDFETAHPFIRKSFVNGRHWIAPTDA*