Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797560 | AVR48489.1 | 76.042 | 96 | 20 | 2 | 93 | 187 | 68 | 161 | 1.86e-38 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797560 | sp|P47192|VA722_ARATH | 61.458 | 96 | 34 | 2 | 93 | 187 | 64 | 157 | 5.13e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797560 | A0A2R3ZDI9 | 76.042 | 96 | 20 | 2 | 93 | 187 | 68 | 161 | 8.88e-39 | 144 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0797560 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0797560 | Msa0931700 | 0.891775 | 2.917998e-74 | -8.615850e-47 |
| Msa0797560 | Msa1377680 | 0.892766 | 1.172467e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797560 | MtrunA17_Chr2g0291651 | 75.000 | 96 | 21 | 2 | 93 | 187 | 68 | 161 | 3.34e-42 | 143 |
| Msa0797560 | MtrunA17_Chr5g0396491 | 89.855 | 69 | 7 | 0 | 191 | 259 | 413 | 481 | 6.00e-40 | 144 |
| Msa0797560 | MtrunA17_Chr4g0043521 | 67.708 | 96 | 28 | 2 | 93 | 187 | 66 | 159 | 7.75e-37 | 129 |
| Msa0797560 | MtrunA17_Chr4g0038851 | 71.014 | 69 | 20 | 0 | 191 | 259 | 404 | 472 | 3.14e-30 | 117 |
| Msa0797560 | MtrunA17_Chr4g0010211 | 55.670 | 97 | 40 | 2 | 92 | 187 | 2 | 96 | 2.60e-29 | 107 |
| Msa0797560 | MtrunA17_Chr4g0010271 | 57.292 | 96 | 38 | 2 | 93 | 187 | 64 | 157 | 4.60e-29 | 109 |
| Msa0797560 | MtrunA17_Chr1g0169851 | 66.197 | 71 | 24 | 0 | 93 | 163 | 15 | 85 | 8.40e-28 | 104 |
| Msa0797560 | MtrunA17_Chr7g0237521 | 66.197 | 71 | 24 | 0 | 93 | 163 | 64 | 134 | 1.42e-27 | 105 |
| Msa0797560 | MtrunA17_Chr1g0169861 | 57.292 | 96 | 38 | 2 | 93 | 187 | 114 | 207 | 1.85e-27 | 106 |
| Msa0797560 | MtrunA17_Chr7g0237561 | 55.208 | 96 | 40 | 2 | 93 | 187 | 64 | 157 | 3.42e-26 | 102 |
| Msa0797560 | MtrunA17_Chr2g0296021 | 60.563 | 71 | 28 | 0 | 93 | 163 | 64 | 134 | 2.89e-23 | 94.4 |
| Msa0797560 | MtrunA17_Chr1g0210521 | 39.130 | 115 | 48 | 4 | 93 | 187 | 64 | 176 | 1.52e-16 | 76.6 |
| Msa0797560 | MtrunA17_Chr3g0085681 | 45.588 | 68 | 36 | 1 | 191 | 258 | 372 | 438 | 1.24e-12 | 67.0 |
| Msa0797560 | MtrunA17_Chr7g0224271 | 35.632 | 87 | 49 | 2 | 175 | 256 | 589 | 673 | 3.46e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797560 | AT2G33120.1 | 61.458 | 96 | 34 | 2 | 93 | 187 | 64 | 157 | 5.22e-31 | 115 |
| Msa0797560 | AT2G33110.2 | 71.429 | 70 | 20 | 0 | 93 | 162 | 64 | 133 | 1.82e-30 | 112 |
| Msa0797560 | AT2G32670.1 | 76.056 | 71 | 17 | 0 | 93 | 163 | 129 | 199 | 1.87e-30 | 115 |
| Msa0797560 | AT1G04750.1 | 60.417 | 96 | 35 | 2 | 93 | 187 | 64 | 157 | 2.10e-30 | 113 |
| Msa0797560 | AT2G33120.2 | 60.417 | 96 | 35 | 2 | 93 | 187 | 72 | 165 | 2.44e-30 | 113 |
| Msa0797560 | AT2G33110.1 | 70.423 | 71 | 21 | 0 | 93 | 163 | 64 | 134 | 5.59e-30 | 112 |
| Msa0797560 | AT1G04760.2 | 73.239 | 71 | 19 | 0 | 93 | 163 | 64 | 134 | 9.89e-30 | 111 |
| Msa0797560 | AT1G04760.1 | 73.239 | 71 | 19 | 0 | 93 | 163 | 64 | 134 | 9.89e-30 | 111 |
| Msa0797560 | AT1G50420.1 | 66.667 | 69 | 23 | 0 | 191 | 259 | 414 | 482 | 1.75e-26 | 107 |
| Msa0797560 | AT4G15780.1 | 61.972 | 71 | 27 | 0 | 93 | 163 | 65 | 135 | 1.32e-23 | 94.7 |
| Msa0797560 | AT1G04750.2 | 59.259 | 81 | 30 | 2 | 108 | 187 | 1 | 79 | 4.06e-23 | 92.0 |
| Msa0797560 | AT1G04750.4 | 59.259 | 81 | 30 | 2 | 108 | 187 | 1 | 79 | 4.06e-23 | 92.0 |
| Msa0797560 | AT1G04750.3 | 59.259 | 81 | 30 | 2 | 108 | 187 | 1 | 79 | 4.06e-23 | 92.0 |
| Msa0797560 | AT3G54300.3 | 38.462 | 117 | 46 | 4 | 93 | 187 | 64 | 176 | 1.05e-14 | 72.0 |
| Msa0797560 | AT3G54300.2 | 38.462 | 117 | 46 | 4 | 93 | 187 | 64 | 176 | 1.05e-14 | 72.0 |
| Msa0797560 | AT3G54300.1 | 38.462 | 117 | 46 | 4 | 93 | 187 | 64 | 176 | 1.05e-14 | 72.0 |
Find 74 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTCCTTGTTAAGGCTAT+TGG | 0.247487 | 5_3:+9755607 | None:intergenic |
| AATAGCCTTAACAAGGAGTT+TGG | 0.289067 | 5_3:-9755605 | Msa0797560:CDS |
| CCAAGAGGAAGAAGGGAAAT+TGG | 0.317265 | 5_3:-9756761 | Msa0797560:CDS |
| TGCATATGTTCCTTCAACTT+TGG | 0.333932 | 5_3:+9755497 | None:intergenic |
| CCAATTTCCCTTCTTCCTCT+TGG | 0.334831 | 5_3:+9756761 | None:intergenic |
| AACTCCTTGTTAAGGCTATT+GGG | 0.344900 | 5_3:+9755608 | None:intergenic |
| AGACTTGATTCCTGTGGATT+TGG | 0.369989 | 5_3:-9752608 | Msa0797560:CDS |
| AGAAGGTTTCTACAGGGTTA+TGG | 0.375050 | 5_3:-9752548 | Msa0797560:CDS |
| AAGGGAGGGAGAGGAGAAGA+AGG | 0.375659 | 5_3:-9756829 | Msa0797560:CDS |
| TGTGCAGCTGGGTATTGTGC+TGG | 0.380986 | 5_3:-9755963 | Msa0797560:intron |
| CCTTGAGGCTATTCCATTTG+TGG | 0.382802 | 5_3:+9753930 | None:intergenic |
| TATAGAATGAGAGAAGAAAA+TGG | 0.386659 | 5_3:-9752515 | Msa0797560:CDS |
| TTAATGCAGGTTACCACAAA+TGG | 0.394064 | 5_3:-9753943 | Msa0797560:intron |
| GCCTCAAGGGTTGATGGATA+TGG | 0.399274 | 5_3:-9753916 | Msa0797560:CDS |
| AGGGAAAGTGACGGGGAGAA+AGG | 0.415410 | 5_3:-9756882 | Msa0797560:CDS |
| TTATATGAACAAGTTGGTCT+TGG | 0.432226 | 5_3:-9756269 | Msa0797560:CDS |
| AAGAAAAGAAGAGGAAACAG+TGG | 0.433575 | 5_3:-9756788 | Msa0797560:CDS |
| CAGTATACGATAATAGCTTA+AGG | 0.434273 | 5_3:+9752577 | None:intergenic |
| TAGTAACCTGCTGGCAGGAC+AGG | 0.439719 | 5_3:-9752487 | Msa0797560:CDS |
| TGAACAAGTTGGTCTTGGTT+GGG | 0.442711 | 5_3:-9756264 | Msa0797560:CDS |
| GAACGAGAGAAGGGAGGGAG+AGG | 0.446128 | 5_3:-9756838 | Msa0797560:CDS |
| GGGGAGAAAGGGAAAGTGAC+GGG | 0.449423 | 5_3:-9756870 | Msa0797560:CDS |
| ATGAACAAGTTGGTCTTGGT+TGG | 0.452022 | 5_3:-9756265 | Msa0797560:CDS |
| GGGAAAGTGACGGGGAGAAA+GGG | 0.453924 | 5_3:-9756881 | Msa0797560:CDS |
| GGGAGAAAGGGAAAGTGACG+GGG | 0.454412 | 5_3:-9756869 | Msa0797560:CDS |
| AGGATATTATATGAACAAGT+TGG | 0.456734 | 5_3:-9756275 | Msa0797560:CDS |
| GGAATAGCCTCAAGGGTTGA+TGG | 0.463256 | 5_3:-9753922 | Msa0797560:CDS |
| AACTAGAAGACAGGTTCCTA+TGG | 0.467041 | 5_3:-9755699 | Msa0797560:CDS |
| GCAGGCAAGAAGGTTTCTAC+AGG | 0.468697 | 5_3:-9752555 | Msa0797560:CDS |
| GGGAGAAACAGAACGAGAGA+AGG | 0.471024 | 5_3:-9756848 | Msa0797560:CDS |
| CAACAACAGTGTGGAGAGCT+AGG | 0.475812 | 5_3:-9752454 | Msa0797560:CDS |
| TCTGCACAGGCCAAAGTTGA+AGG | 0.478923 | 5_3:-9755507 | Msa0797560:intron |
| AGTACCCAAACTCCTTGTTA+AGG | 0.484076 | 5_3:+9755600 | None:intergenic |
| ATCCTTGACACGCTCTAGAA+AGG | 0.487141 | 5_3:+9755676 | None:intergenic |
| GGAGAAACAGAACGAGAGAA+GGG | 0.497591 | 5_3:-9756847 | Msa0797560:CDS |
| ATAGCCTTAACAAGGAGTTT+GGG | 0.499292 | 5_3:-9755604 | Msa0797560:intron |
| AGTATACGATAATAGCTTAA+GGG | 0.507427 | 5_3:+9752578 | None:intergenic |
| ACAGAAATAGGGAAAGTGAC+GGG | 0.510497 | 5_3:-9756890 | Msa0797560:intron |
| CAAAGACCTGTCCTGCCAGC+AGG | 0.516037 | 5_3:+9752481 | None:intergenic |
| AAACAGAACGAGAGAAGGGA+GGG | 0.518245 | 5_3:-9756843 | Msa0797560:CDS |
| GTGCAGCTGGGTATTGTGCT+GGG | 0.521168 | 5_3:-9755962 | Msa0797560:intron |
| GTCAAAATATGGTGGTGAAA+AGG | 0.526879 | 5_3:-9755645 | Msa0797560:CDS |
| GGAGAAAGGGAAAGTGACGG+GGG | 0.540858 | 5_3:-9756868 | Msa0797560:CDS |
| ATCGTATACTGCAGGCAAGA+AGG | 0.553817 | 5_3:-9752565 | Msa0797560:CDS |
| GTGGGTAACCAAGAGGAAGA+AGG | 0.555031 | 5_3:-9756769 | Msa0797560:CDS |
| CTACAGGGTTATGGTTGTGA+CGG | 0.558409 | 5_3:-9752539 | Msa0797560:CDS |
| GAAACAGAACGAGAGAAGGG+AGG | 0.558418 | 5_3:-9756844 | Msa0797560:CDS |
| GAAGAAGGAAAAGAAGCCGA+TGG | 0.563967 | 5_3:-9756814 | Msa0797560:CDS |
| TTGTTCATATAATATCCTAA+AGG | 0.569597 | 5_3:+9756280 | None:intergenic |
| AAGCTATTATCGTATACTGC+AGG | 0.573353 | 5_3:-9752573 | Msa0797560:CDS |
| AGAAAAGAAGAGGAAACAGT+GGG | 0.574477 | 5_3:-9756787 | Msa0797560:CDS |
| CACAAATGGAATAGCCTCAA+GGG | 0.574895 | 5_3:-9753929 | Msa0797560:CDS |
| GCTGGGTATTGTGCTGGGAA+AGG | 0.576415 | 5_3:-9755957 | Msa0797560:CDS |
| CGATGGAGAAAGAAAAGAAG+AGG | 0.576550 | 5_3:-9756797 | Msa0797560:CDS |
| AAATTGGAGAAGAATATTCA+AGG | 0.576564 | 5_3:-9756745 | Msa0797560:intron |
| TGGTGTTGATCTCAAGAAAG+TGG | 0.588028 | 5_3:-9753896 | Msa0797560:CDS |
| AGATGAATCAACTAGAAGAC+AGG | 0.588785 | 5_3:-9755708 | Msa0797560:CDS |
| CCACAAATGGAATAGCCTCA+AGG | 0.595503 | 5_3:-9753930 | Msa0797560:CDS |
| TGGGTAACCAAGAGGAAGAA+GGG | 0.601125 | 5_3:-9756768 | Msa0797560:CDS |
| GGGGACATTACCAAATCCAC+AGG | 0.602260 | 5_3:+9752598 | None:intergenic |
| GTATACGATAATAGCTTAAG+GGG | 0.604591 | 5_3:+9752579 | None:intergenic |
| TACAGAAATAGGGAAAGTGA+CGG | 0.610620 | 5_3:-9756891 | Msa0797560:intron |
| CAAGATAAGCAAGCTTGCAA+AGG | 0.611690 | 5_3:-9755453 | Msa0797560:intron |
| TCCTCCCAATAGCCTTAACA+AGG | 0.621229 | 5_3:-9755612 | Msa0797560:CDS |
| CAGAAATAGGGAAAGTGACG+GGG | 0.627024 | 5_3:-9756889 | Msa0797560:CDS |
| GGCCTTTCTAGAGCGTGTCA+AGG | 0.628423 | 5_3:-9755678 | Msa0797560:CDS |
| CGGGGAGAAAGGGAAAGTGA+CGG | 0.630391 | 5_3:-9756871 | Msa0797560:CDS |
| TCCTTGTTAAGGCTATTGGG+AGG | 0.643952 | 5_3:+9755611 | None:intergenic |
| CAGGCAAGAAGGTTTCTACA+GGG | 0.650713 | 5_3:-9752554 | Msa0797560:CDS |
| TTTATGAGACTTGATTCCTG+TGG | 0.650871 | 5_3:-9752614 | Msa0797560:CDS |
| ACACGCTCTAGAAAGGCCAT+AGG | 0.658618 | 5_3:+9755683 | None:intergenic |
| GGAAACAGTGGGTAACCAAG+AGG | 0.685707 | 5_3:-9756776 | Msa0797560:CDS |
| ACCATATCCATCAACCCTTG+AGG | 0.687454 | 5_3:+9753915 | None:intergenic |
| GTGCTGGGAAAGGCTAAGAG+TGG | 0.721903 | 5_3:-9755947 | Msa0797560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTCTATAAATATTTC+TGG | - | chr5_3:9755323-9755342 | Msa0797560:intron | 10.0% |
| !! | ATTGTAAGAAAATAAAAAAA+AGG | + | chr5_3:9756082-9756101 | None:intergenic | 10.0% |
| !!! | TATAAAATTGATTACCTTTT+TGG | - | chr5_3:9754169-9754188 | Msa0797560:intron | 15.0% |
| !! | AAAATTACTATCTACAATTT+AGG | + | chr5_3:9754717-9754736 | None:intergenic | 15.0% |
| !!! | TAATTTTGACCAAAATAATT+TGG | - | chr5_3:9754730-9754749 | Msa0797560:intron | 15.0% |
| !! | AGATAAAATTCAAATGAAAT+GGG | + | chr5_3:9755225-9755244 | None:intergenic | 15.0% |
| !! | TAGATAAAATTCAAATGAAA+TGG | + | chr5_3:9755226-9755245 | None:intergenic | 15.0% |
| !! | ATTTGAATTGATAAATAGTA+GGG | + | chr5_3:9755287-9755306 | None:intergenic | 15.0% |
| !! | TATTTGAATTGATAAATAGT+AGG | + | chr5_3:9755288-9755307 | None:intergenic | 15.0% |
| !!! | ACTCTATTTATTTTAAGTAT+AGG | + | chr5_3:9755441-9755460 | None:intergenic | 15.0% |
| !! | CTATAAAACAAATCAAAAAA+GGG | + | chr5_3:9755704-9755723 | None:intergenic | 15.0% |
| !!! | CTTTTTTGATTTGTTTTATA+GGG | - | chr5_3:9755703-9755722 | Msa0797560:CDS | 15.0% |
| !! | AAATCAAAAACTAAAATTTG+GGG | + | chr5_3:9755754-9755773 | None:intergenic | 15.0% |
| !! | CAAATCAAAAACTAAAATTT+GGG | + | chr5_3:9755755-9755774 | None:intergenic | 15.0% |
| !! | ACAAATCAAAAACTAAAATT+TGG | + | chr5_3:9755756-9755775 | None:intergenic | 15.0% |
| !!! | AGTTTTTGATTTGTTTTATT+CGG | - | chr5_3:9755762-9755781 | Msa0797560:intron | 15.0% |
| !!! | AGTTTGATTTTAAAATTAGA+AGG | + | chr5_3:9755973-9755992 | None:intergenic | 15.0% |
| !!! | GATTTTGATACATTTTTTTA+TGG | - | chr5_3:9756636-9756655 | Msa0797560:intron | 15.0% |
| !! | AATTGATTGATGAATAATAT+CGG | + | chr5_3:9756743-9756762 | None:intergenic | 15.0% |
| !!! | TTGTGATTTTATACAGAAAT+AGG | - | chr5_3:9752508-9752527 | Msa0797560:CDS | 20.0% |
| !!! | TGTGATTTTATACAGAAATA+GGG | - | chr5_3:9752509-9752528 | Msa0797560:CDS | 20.0% |
| !!! | TATTTTTGTTTTTGCTTTTG+TGG | - | chr5_3:9752817-9752836 | Msa0797560:intron | 20.0% |
| !!! | TTTTTTGTTGATTCTGTTTT+TGG | - | chr5_3:9752858-9752877 | Msa0797560:intron | 20.0% |
| !! | TTTGTGAAATTGACTAAAAT+TGG | - | chr5_3:9752983-9753002 | Msa0797560:intron | 20.0% |
| !! | GTAAAAATAGAATTTCATAC+TGG | + | chr5_3:9753104-9753123 | None:intergenic | 20.0% |
| !! | TTGTTCATATAATATCCTAA+AGG | + | chr5_3:9753133-9753152 | None:intergenic | 20.0% |
| !! | ATTCAATTACCACATATTAA+AGG | + | chr5_3:9753397-9753416 | None:intergenic | 20.0% |
| !! | TACCAAATAAACTTGTAAAA+GGG | + | chr5_3:9753421-9753440 | None:intergenic | 20.0% |
| !! | TAAGATGATAATTTCCTTTA+TGG | + | chr5_3:9753527-9753546 | None:intergenic | 20.0% |
| !! | TTTGATGGGATAAAAATTTA+TGG | - | chr5_3:9754231-9754250 | Msa0797560:intron | 20.0% |
| !! | TTGATGGGATAAAAATTTAT+GGG | - | chr5_3:9754232-9754251 | Msa0797560:intron | 20.0% |
| !! | GAAAATAAAAAAGAATGAAG+GGG | + | chr5_3:9754542-9754561 | None:intergenic | 20.0% |
| !! | GGAAAATAAAAAAGAATGAA+GGG | + | chr5_3:9754543-9754562 | None:intergenic | 20.0% |
| !! | AGGAAAATAAAAAAGAATGA+AGG | + | chr5_3:9754544-9754563 | None:intergenic | 20.0% |
| !! | AATATATAAATTAGGCTCAA+AGG | + | chr5_3:9754564-9754583 | None:intergenic | 20.0% |
| !! | ATATACATTCATTTAACCAT+TGG | - | chr5_3:9754589-9754608 | Msa0797560:intron | 20.0% |
| !! | CACTACTTAATTAATCAATA+AGG | - | chr5_3:9754940-9754959 | Msa0797560:intron | 20.0% |
| !!! | TATTGATTCTTAGTTAATTG+AGG | - | chr5_3:9754981-9755000 | Msa0797560:intron | 20.0% |
| !!! | TTTTATCTTTGTTGTTAGTT+TGG | - | chr5_3:9755128-9755147 | Msa0797560:intron | 20.0% |
| !! | CCTATAAAACAAATCAAAAA+AGG | + | chr5_3:9755705-9755724 | None:intergenic | 20.0% |
| !!! | CCTTTTTTGATTTGTTTTAT+AGG | - | chr5_3:9755702-9755721 | Msa0797560:CDS | 20.0% |
| !!! | TTATTTTCTTACAATTTTGC+AGG | - | chr5_3:9756087-9756106 | Msa0797560:intron | 20.0% |
| !! | GCAATAGTAAATGTATAAAA+AGG | - | chr5_3:9756571-9756590 | Msa0797560:intron | 20.0% |
| !!! | TTGATACATTTTTTTATGGT+TGG | - | chr5_3:9756640-9756659 | Msa0797560:intron | 20.0% |
| !!! | AGTTTTTCATGTCTTTATTA+GGG | + | chr5_3:9756766-9756785 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCATGTCTTTATT+AGG | + | chr5_3:9756767-9756786 | None:intergenic | 20.0% |
| ! | AAATTGGAGAAGAATATTCA+AGG | - | chr5_3:9752665-9752684 | Msa0797560:intron | 25.0% |
| !! | CTTGATGACTTAAAAATTGA+TGG | - | chr5_3:9753024-9753043 | Msa0797560:intron | 25.0% |
| !!! | TGAAATTCTATTTTTACTGC+AGG | - | chr5_3:9753107-9753126 | Msa0797560:intron | 25.0% |
| ! | AGGATATTATATGAACAAGT+TGG | - | chr5_3:9753135-9753154 | Msa0797560:intron | 25.0% |
| !!! | TACTGGTTCATATTTTGTAA+TGG | + | chr5_3:9753178-9753197 | None:intergenic | 25.0% |
| !!! | TTTTTTCCTAATCATTCTGA+TGG | - | chr5_3:9753299-9753318 | Msa0797560:intron | 25.0% |
| !!! | TGATGGAGAATTGTTTTTAA+AGG | - | chr5_3:9753316-9753335 | Msa0797560:intron | 25.0% |
| ! | AATCTTAATATCAAGCTCTT+GGG | + | chr5_3:9753355-9753374 | None:intergenic | 25.0% |
| ! | AAATCTTAATATCAAGCTCT+TGG | + | chr5_3:9753356-9753375 | None:intergenic | 25.0% |
| !! | TTCCCTTTTACAAGTTTATT+TGG | - | chr5_3:9753416-9753435 | Msa0797560:intron | 25.0% |
| ! | GTACCAAATAAACTTGTAAA+AGG | + | chr5_3:9753422-9753441 | None:intergenic | 25.0% |
| ! | TAATAGGAGATTATCATCTT+AGG | - | chr5_3:9753498-9753517 | Msa0797560:intron | 25.0% |
| !! | AGAAGAAATGTCTAACTTTT+TGG | - | chr5_3:9753655-9753674 | Msa0797560:intron | 25.0% |
| !! | GAAGAAATGTCTAACTTTTT+GGG | - | chr5_3:9753656-9753675 | Msa0797560:intron | 25.0% |
| !! | GATGATTTTGTGTCAAAATA+TGG | - | chr5_3:9753754-9753773 | Msa0797560:intron | 25.0% |
| !!! | TAAACTTTTGGAGTTTAATC+TGG | - | chr5_3:9753845-9753864 | Msa0797560:intron | 25.0% |
| !! | CTGGTAGACTATTTATATTT+TGG | - | chr5_3:9753864-9753883 | Msa0797560:intron | 25.0% |
| !!! | TACCTTTTTGGTTATATCAT+TGG | - | chr5_3:9754181-9754200 | Msa0797560:intron | 25.0% |
| ! | TGCTTGAATTGTTTATTTGA+TGG | - | chr5_3:9754216-9754235 | Msa0797560:intron | 25.0% |
| ! | GCTTGAATTGTTTATTTGAT+GGG | - | chr5_3:9754217-9754236 | Msa0797560:intron | 25.0% |
| ! | AAAGAAAATGTAGAGAAAGA+AGG | + | chr5_3:9754338-9754357 | None:intergenic | 25.0% |
| ! | TTCGAACATTAAGAAAAGAA+GGG | + | chr5_3:9754511-9754530 | None:intergenic | 25.0% |
| ! | ATTCGAACATTAAGAAAAGA+AGG | + | chr5_3:9754512-9754531 | None:intergenic | 25.0% |
| ! | TTGAAAGCTAGTTAGAAAAA+AGG | + | chr5_3:9754831-9754850 | None:intergenic | 25.0% |
| ! | ATAAGGCAGTAAACAATTAT+TGG | - | chr5_3:9754957-9754976 | Msa0797560:intron | 25.0% |
| ! | ATTATTTGAATCATTCGCTA+TGG | - | chr5_3:9755005-9755024 | Msa0797560:intron | 25.0% |
| ! | AACAACCAAATGTATCAAAA+AGG | + | chr5_3:9755197-9755216 | None:intergenic | 25.0% |
| !! | TATTATGACATTTTTGCAAG+AGG | + | chr5_3:9755623-9755642 | None:intergenic | 25.0% |
| !! | ACAATTTTGCAGGTTTTTTA+TGG | - | chr5_3:9756097-9756116 | Msa0797560:intron | 25.0% |
| !! | TTTTATGGAGAAATTCAGAT+TGG | - | chr5_3:9756112-9756131 | Msa0797560:intron | 25.0% |
| ! | AATAGCAACTTACAAATATG+AGG | + | chr5_3:9756374-9756393 | None:intergenic | 25.0% |
| ! | TATCCTTTCATTCAATCATA+TGG | - | chr5_3:9756496-9756515 | Msa0797560:intron | 25.0% |
| ! | TAGCAATTAAATTGTTGCAT+GGG | - | chr5_3:9756594-9756613 | Msa0797560:intron | 25.0% |
| ! | GTGTACAAACTTGATAAAAA+AGG | - | chr5_3:9756715-9756734 | Msa0797560:intron | 25.0% |
| ! | GACATGAAAAACTTCATAAA+TGG | - | chr5_3:9756773-9756792 | Msa0797560:CDS | 25.0% |
| ! | AGTATACGATAATAGCTTAA+GGG | + | chr5_3:9756835-9756854 | None:intergenic | 25.0% |
| ! | TATAGAATGAGAGAAGAAAA+TGG | - | chr5_3:9756895-9756914 | Msa0797560:intron | 25.0% |
| ! | GTGATTTCTTGCTATATTGT+GGG | - | chr5_3:9752687-9752706 | Msa0797560:intron | 30.0% |
| ATATTGTGGGAATGCATAAT+TGG | - | chr5_3:9752700-9752719 | Msa0797560:intron | 30.0% | |
| TGGCTTATGATGAATATTCA+AGG | - | chr5_3:9752720-9752739 | Msa0797560:intron | 30.0% | |
| !!! | TTGTTTTTGCTTTTGTGGTT+TGG | - | chr5_3:9752822-9752841 | Msa0797560:intron | 30.0% |
| !!! | TTTTGAGATGAAATCACACT+TGG | - | chr5_3:9752940-9752959 | Msa0797560:intron | 30.0% |
| CTTGGTATAAATTGCACATA+AGG | - | chr5_3:9752958-9752977 | Msa0797560:intron | 30.0% | |
| TGATATATGAATCTGTTCAG+TGG | - | chr5_3:9753064-9753083 | Msa0797560:intron | 30.0% | |
| !! | TTATATGAACAAGTTGGTCT+TGG | - | chr5_3:9753141-9753160 | Msa0797560:intron | 30.0% |
| CTATTCCATCTTTCTAAGTA+TGG | + | chr5_3:9753211-9753230 | None:intergenic | 30.0% | |
| AATTCTCCATCAGAATGATT+AGG | + | chr5_3:9753308-9753327 | None:intergenic | 30.0% | |
| CACAATGTTCCTTTAATATG+TGG | - | chr5_3:9753385-9753404 | Msa0797560:intron | 30.0% | |
| ATAATCTCCTATTAGTACTC+TGG | + | chr5_3:9753492-9753511 | None:intergenic | 30.0% | |
| ATCATCTTAGGTAACCATAA+AGG | - | chr5_3:9753510-9753529 | Msa0797560:intron | 30.0% | |
| ! | GATTTTGTGTCAAAATATGG+TGG | - | chr5_3:9753757-9753776 | Msa0797560:intron | 30.0% |
| !! | AACTTTCTGCTCTAAACTTT+TGG | - | chr5_3:9753833-9753852 | Msa0797560:intron | 30.0% |
| ! | CATGATGGAGAATATTGAAA+AGG | - | chr5_3:9754012-9754031 | Msa0797560:intron | 30.0% |
| TCAAGTCAATGTTATCATAG+AGG | - | chr5_3:9754056-9754075 | Msa0797560:intron | 30.0% | |
| TCATTGATGAGAATTGATAG+AGG | - | chr5_3:9754082-9754101 | Msa0797560:intron | 30.0% | |
| CACCAATGATATAACCAAAA+AGG | + | chr5_3:9754186-9754205 | None:intergenic | 30.0% | |
| TCGAACATTAAGAAAAGAAG+GGG | + | chr5_3:9754510-9754529 | None:intergenic | 30.0% | |
| CCAAAATTCAGAAATTCCAA+TGG | + | chr5_3:9754608-9754627 | None:intergenic | 30.0% | |
| ! | CCATTGGAATTTCTGAATTT+TGG | - | chr5_3:9754605-9754624 | Msa0797560:intron | 30.0% |
| ! | CATAGTCAAGATAACTTTTC+AGG | + | chr5_3:9754760-9754779 | None:intergenic | 30.0% |
| TTCTATTAATTGCCTCACTA+TGG | - | chr5_3:9754805-9754824 | Msa0797560:intron | 30.0% | |
| TTAACTACAGTAGAGATTCT+TGG | - | chr5_3:9754866-9754885 | Msa0797560:intron | 30.0% | |
| AAATCATTAGAGAAATGCCA+AGG | + | chr5_3:9755034-9755053 | None:intergenic | 30.0% | |
| !! | CTTTGTTGTTAGTTTGGATT+TGG | - | chr5_3:9755134-9755153 | Msa0797560:intron | 30.0% |
| CCAAATGTATCAAAAAGGAT+AGG | + | chr5_3:9755192-9755211 | None:intergenic | 30.0% | |
| ! | CCTATCCTTTTTGATACATT+TGG | - | chr5_3:9755189-9755208 | Msa0797560:intron | 30.0% |
| ! | ATAGAGTTTTTCCTTAATGC+AGG | - | chr5_3:9755454-9755473 | Msa0797560:CDS | 30.0% |
| !! | TGAATGAGACTGATTTTCTT+AGG | - | chr5_3:9755657-9755676 | Msa0797560:CDS | 30.0% |
| !! | GAATGAGACTGATTTTCTTA+GGG | - | chr5_3:9755658-9755677 | Msa0797560:CDS | 30.0% |
| GTTAGCATTGTTATCACAAT+TGG | + | chr5_3:9755881-9755900 | None:intergenic | 30.0% | |
| ! | ATGCTAACATCATTTTCCAT+TGG | - | chr5_3:9755893-9755912 | Msa0797560:intron | 30.0% |
| TAGTAAAATGTCCTCTTTCT+AGG | - | chr5_3:9755916-9755935 | Msa0797560:intron | 30.0% | |
| AATTCAGATTGGTACTCATT+TGG | - | chr5_3:9756123-9756142 | Msa0797560:intron | 30.0% | |
| ATTCAGATTGGTACTCATTT+GGG | - | chr5_3:9756124-9756143 | Msa0797560:intron | 30.0% | |
| ACATTCAACACATACAAATC+AGG | + | chr5_3:9756232-9756251 | None:intergenic | 30.0% | |
| ! | GTATGTGTTGAATGTTGTTT+AGG | - | chr5_3:9756237-9756256 | Msa0797560:intron | 30.0% |
| ACACCATATGATTGAATGAA+AGG | + | chr5_3:9756502-9756521 | None:intergenic | 30.0% | |
| ! | ACTGTAAATACACTTTTGCT+AGG | + | chr5_3:9756530-9756549 | None:intergenic | 30.0% |
| GTAGCAATTAAATTGTTGCA+TGG | - | chr5_3:9756593-9756612 | Msa0797560:intron | 30.0% | |
| GTATACGATAATAGCTTAAG+GGG | + | chr5_3:9756834-9756853 | None:intergenic | 30.0% | |
| CAGTATACGATAATAGCTTA+AGG | + | chr5_3:9756836-9756855 | None:intergenic | 30.0% | |
| TACAGAAATAGGGAAAGTGA+CGG | - | chr5_3:9752519-9752538 | Msa0797560:CDS | 35.0% | |
| ! | CTCTTCTTTTCTTTCTCCAT+CGG | + | chr5_3:9752615-9752634 | None:intergenic | 35.0% |
| AAGAAAAGAAGAGGAAACAG+TGG | - | chr5_3:9752622-9752641 | Msa0797560:CDS | 35.0% | |
| AGAAAAGAAGAGGAAACAGT+GGG | - | chr5_3:9752623-9752642 | Msa0797560:CDS | 35.0% | |
| ! | GGTGATTTCTTGCTATATTG+TGG | - | chr5_3:9752686-9752705 | Msa0797560:intron | 35.0% |
| !! | TATTTTTACTGCAGGCCTTT+AGG | - | chr5_3:9753115-9753134 | Msa0797560:intron | 35.0% |
| TCCTACCATACTTAGAAAGA+TGG | - | chr5_3:9753203-9753222 | Msa0797560:intron | 35.0% | |
| TCCATCTTTCTAAGTATGGT+AGG | + | chr5_3:9753207-9753226 | None:intergenic | 35.0% | |
| ! | TCCAGCATTTATGTTTTCAG+AGG | - | chr5_3:9753555-9753574 | Msa0797560:intron | 35.0% |
| ! | ACCTCTGAAAACATAAATGC+TGG | + | chr5_3:9753559-9753578 | None:intergenic | 35.0% |
| AGATGAATCAACTAGAAGAC+AGG | - | chr5_3:9753702-9753721 | Msa0797560:intron | 35.0% | |
| ! | GTCAAAATATGGTGGTGAAA+AGG | - | chr5_3:9753765-9753784 | Msa0797560:intron | 35.0% |
| AACTCCTTGTTAAGGCTATT+GGG | + | chr5_3:9753805-9753824 | None:intergenic | 35.0% | |
| AAACTCCTTGTTAAGGCTAT+TGG | + | chr5_3:9753806-9753825 | None:intergenic | 35.0% | |
| ! | AATAGCCTTAACAAGGAGTT+TGG | - | chr5_3:9753805-9753824 | Msa0797560:intron | 35.0% |
| ! | ATAGCCTTAACAAGGAGTTT+GGG | - | chr5_3:9753806-9753825 | Msa0797560:intron | 35.0% |
| TGCATATGTTCCTTCAACTT+TGG | + | chr5_3:9753916-9753935 | None:intergenic | 35.0% | |
| !! | TGAAGTTAAAGGTGTCATGA+TGG | - | chr5_3:9753997-9754016 | Msa0797560:intron | 35.0% |
| TGCTAATTCTCTAACACAGA+TGG | - | chr5_3:9754124-9754143 | Msa0797560:intron | 35.0% | |
| !!! | CTCTAACACAGATGGTTTTT+TGG | - | chr5_3:9754132-9754151 | Msa0797560:intron | 35.0% |
| ATGTAGAGAAAGAAGGAAGA+GGG | + | chr5_3:9754331-9754350 | None:intergenic | 35.0% | |
| AATGTAGAGAAAGAAGGAAG+AGG | + | chr5_3:9754332-9754351 | None:intergenic | 35.0% | |
| !! | TTCTGAATTTTGGCCTGATA+CGG | - | chr5_3:9754615-9754634 | Msa0797560:intron | 35.0% |
| ! | TCAGGCACACCAAATTATTT+TGG | + | chr5_3:9754742-9754761 | None:intergenic | 35.0% |
| TTAGAAAAAAGGCCATAGTG+AGG | + | chr5_3:9754820-9754839 | None:intergenic | 35.0% | |
| TTTGGATTTGGCCATAGATT+CGG | - | chr5_3:9755146-9755165 | Msa0797560:intron | 35.0% | |
| ATTAAACTCCTCCGAATCTA+TGG | + | chr5_3:9755160-9755179 | None:intergenic | 35.0% | |
| ATTTGTGGTAACCTGCATTA+AGG | + | chr5_3:9755468-9755487 | None:intergenic | 35.0% | |
| TTAATGCAGGTTACCACAAA+TGG | - | chr5_3:9755467-9755486 | Msa0797560:CDS | 35.0% | |
| GTGGTAGAAAAAGTAGAACA+TGG | - | chr5_3:9755533-9755552 | Msa0797560:intron | 35.0% | |
| ! | AGTAGAACATGGTTTGTAAC+TGG | - | chr5_3:9755544-9755563 | Msa0797560:intron | 35.0% |
| ACAAATACTCAAGAAGCCAT+TGG | + | chr5_3:9755598-9755617 | None:intergenic | 35.0% | |
| ! | ACTAAAATTTGGGGTTCAAC+TGG | + | chr5_3:9755745-9755764 | None:intergenic | 35.0% |
| ! | AGAGGACATTTTACTACCAA+TGG | + | chr5_3:9755912-9755931 | None:intergenic | 35.0% |
| TAACAAACTCTCCTAGAAAG+AGG | + | chr5_3:9755930-9755949 | None:intergenic | 35.0% | |
| ACAGACTTATCACAATTGAG+AGG | + | chr5_3:9756024-9756043 | None:intergenic | 35.0% | |
| !!! | ATTTGGGAAGTTGTTTTTGC+AGG | - | chr5_3:9756140-9756159 | Msa0797560:intron | 35.0% |
| CATACAAATCAGGACATATG+AGG | + | chr5_3:9756222-9756241 | None:intergenic | 35.0% | |
| ! | TGTGTTGAATGTTGTTTAGG+AGG | - | chr5_3:9756240-9756259 | Msa0797560:CDS | 35.0% |
| ! | GTGTTGAATGTTGTTTAGGA+GGG | - | chr5_3:9756241-9756260 | Msa0797560:CDS | 35.0% |
| ! | TGTTGAATGTTGTTTAGGAG+GGG | - | chr5_3:9756242-9756261 | Msa0797560:CDS | 35.0% |
| TGCTTCCAATTCACATGAAT+AGG | - | chr5_3:9756271-9756290 | Msa0797560:CDS | 35.0% | |
| GCTTCCAATTCACATGAATA+GGG | - | chr5_3:9756272-9756291 | Msa0797560:CDS | 35.0% | |
| CTTCCAATTCACATGAATAG+GGG | - | chr5_3:9756273-9756292 | Msa0797560:CDS | 35.0% | |
| TAGTTACATGCCTCTGAATT+TGG | - | chr5_3:9756420-9756439 | Msa0797560:intron | 35.0% | |
| ! | ATTGTTGCATGGGTTATGAT+AGG | - | chr5_3:9756604-9756623 | Msa0797560:intron | 35.0% |
| TTTATGAGACTTGATTCCTG+TGG | - | chr5_3:9756796-9756815 | Msa0797560:CDS | 35.0% | |
| AAGCTATTATCGTATACTGC+AGG | - | chr5_3:9756837-9756856 | Msa0797560:CDS | 35.0% | |
| !!! | CTTTGTTTTCAACAACAGTG+TGG | - | chr5_3:9756947-9756966 | Msa0797560:intron | 35.0% |
| ACAGAAATAGGGAAAGTGAC+GGG | - | chr5_3:9752520-9752539 | Msa0797560:CDS | 40.0% | |
| CGATGGAGAAAGAAAAGAAG+AGG | - | chr5_3:9752613-9752632 | Msa0797560:CDS | 40.0% | |
| ! | CATTCAATCTGAGACATGCA+TGG | + | chr5_3:9752776-9752795 | None:intergenic | 40.0% |
| !!! | CTTTTGTGGTTTGGTGATTC+TGG | - | chr5_3:9752831-9752850 | Msa0797560:intron | 40.0% |
| !! | ATGAACAAGTTGGTCTTGGT+TGG | - | chr5_3:9753145-9753164 | Msa0797560:intron | 40.0% |
| !! | TGAACAAGTTGGTCTTGGTT+GGG | - | chr5_3:9753146-9753165 | Msa0797560:intron | 40.0% |
| AGTATGGTAGGATGACTTAC+TGG | + | chr5_3:9753195-9753214 | None:intergenic | 40.0% | |
| AACTAGAAGACAGGTTCCTA+TGG | - | chr5_3:9753711-9753730 | Msa0797560:intron | 40.0% | |
| AGTACCCAAACTCCTTGTTA+AGG | + | chr5_3:9753813-9753832 | None:intergenic | 40.0% | |
| CAAGATAAGCAAGCTTGCAA+AGG | - | chr5_3:9753957-9753976 | Msa0797560:intron | 40.0% | |
| !! | GCTCAGGTTTCTGAAGTTAA+AGG | - | chr5_3:9753986-9754005 | Msa0797560:intron | 40.0% |
| TGTAGAGAAAGAAGGAAGAG+GGG | + | chr5_3:9754330-9754349 | None:intergenic | 40.0% | |
| CTCTTAATCACTACCTGTAG+TGG | + | chr5_3:9754404-9754423 | None:intergenic | 40.0% | |
| GACTGGATTTGTCTCAAGTA+TGG | - | chr5_3:9754646-9754665 | Msa0797560:intron | 40.0% | |
| ATCATTCGCTATGGTTTCCT+TGG | - | chr5_3:9755014-9755033 | Msa0797560:intron | 40.0% | |
| TGTGATACCATGCTGAAGTA+GGG | + | chr5_3:9755355-9755374 | None:intergenic | 40.0% | |
| ATGTGATACCATGCTGAAGT+AGG | + | chr5_3:9755356-9755375 | None:intergenic | 40.0% | |
| CACAAATGGAATAGCCTCAA+GGG | - | chr5_3:9755481-9755500 | Msa0797560:CDS | 40.0% | |
| !! | TGGTGTTGATCTCAAGAAAG+TGG | - | chr5_3:9755514-9755533 | Msa0797560:intron | 40.0% |
| ATAGACAAAGCAGTATACCC+AGG | + | chr5_3:9755570-9755589 | None:intergenic | 40.0% | |
| GCTTTGTCTATTGCAACCAA+TGG | - | chr5_3:9755579-9755598 | Msa0797560:intron | 40.0% | |
| CATCCCCTATTCATGTGAAT+TGG | + | chr5_3:9756279-9756298 | None:intergenic | 40.0% | |
| CAATTCACATGAATAGGGGA+TGG | - | chr5_3:9756277-9756296 | Msa0797560:CDS | 40.0% | |
| GATGTGTGAACCAAATTCAG+AGG | + | chr5_3:9756433-9756452 | None:intergenic | 40.0% | |
| AGACTTGATTCCTGTGGATT+TGG | - | chr5_3:9756802-9756821 | Msa0797560:CDS | 40.0% | |
| AGAAGGTTTCTACAGGGTTA+TGG | - | chr5_3:9756862-9756881 | Msa0797560:CDS | 40.0% | |
| !!! | ATGGTTTTGTAGTAACCTGC+TGG | - | chr5_3:9756914-9756933 | Msa0797560:intron | 40.0% |
| CAGAAATAGGGAAAGTGACG+GGG | - | chr5_3:9752521-9752540 | Msa0797560:CDS | 45.0% | |
| GGAGAAACAGAACGAGAGAA+GGG | - | chr5_3:9752563-9752582 | Msa0797560:CDS | 45.0% | |
| AAACAGAACGAGAGAAGGGA+GGG | - | chr5_3:9752567-9752586 | Msa0797560:CDS | 45.0% | |
| GAAGAAGGAAAAGAAGCCGA+TGG | - | chr5_3:9752596-9752615 | Msa0797560:CDS | 45.0% | |
| TGGGTAACCAAGAGGAAGAA+GGG | - | chr5_3:9752642-9752661 | Msa0797560:intron | 45.0% | |
| CCAATTTCCCTTCTTCCTCT+TGG | + | chr5_3:9752652-9752671 | None:intergenic | 45.0% | |
| CCAAGAGGAAGAAGGGAAAT+TGG | - | chr5_3:9752649-9752668 | Msa0797560:intron | 45.0% | |
| ! | GTGGTGACCAGAGTACTAAT+AGG | - | chr5_3:9753482-9753501 | Msa0797560:intron | 45.0% |
| !! | ATGCTGCTGCTTTAGTTCAC+TGG | - | chr5_3:9753624-9753643 | Msa0797560:intron | 45.0% |
| !! | ATCCTTGACACGCTCTAGAA+AGG | + | chr5_3:9753737-9753756 | None:intergenic | 45.0% |
| ! | TCCTCCCAATAGCCTTAACA+AGG | - | chr5_3:9753798-9753817 | Msa0797560:intron | 45.0% |
| TCCTTGTTAAGGCTATTGGG+AGG | + | chr5_3:9753802-9753821 | None:intergenic | 45.0% | |
| CTTGCAAAGGTGAAAAGCTC+AGG | - | chr5_3:9753970-9753989 | Msa0797560:intron | 45.0% | |
| AGAGGGGATTAGAAGAGATG+AGG | + | chr5_3:9754314-9754333 | None:intergenic | 45.0% | |
| GATGAGCTTAGTTCCACTAC+AGG | - | chr5_3:9754388-9754407 | Msa0797560:intron | 45.0% | |
| CCTTGAGGCTATTCCATTTG+TGG | + | chr5_3:9755483-9755502 | None:intergenic | 45.0% | |
| CCACAAATGGAATAGCCTCA+AGG | - | chr5_3:9755480-9755499 | Msa0797560:CDS | 45.0% | |
| ACCATATCCATCAACCCTTG+AGG | + | chr5_3:9755498-9755517 | None:intergenic | 45.0% | |
| ! | AACATGGTTTGTAACTGGCC+TGG | - | chr5_3:9755549-9755568 | Msa0797560:intron | 45.0% |
| ! | ACATGGTTTGTAACTGGCCT+GGG | - | chr5_3:9755550-9755569 | Msa0797560:intron | 45.0% |
| GAGGCTGCACAATATCTTAG+AGG | + | chr5_3:9756005-9756024 | None:intergenic | 45.0% | |
| TCACATGAATAGGGGATGGA+AGG | - | chr5_3:9756281-9756300 | Msa0797560:CDS | 45.0% | |
| ACTGCTGCATCTTATGCAAG+AGG | - | chr5_3:9756326-9756345 | Msa0797560:intron | 45.0% | |
| ATCGTATACTGCAGGCAAGA+AGG | - | chr5_3:9756845-9756864 | Msa0797560:CDS | 45.0% | |
| CAGGCAAGAAGGTTTCTACA+GGG | - | chr5_3:9756856-9756875 | Msa0797560:CDS | 45.0% | |
| CTACAGGGTTATGGTTGTGA+CGG | - | chr5_3:9756871-9756890 | Msa0797560:CDS | 45.0% | |
| ! | TTTTGTAGTAACCTGCTGGC+AGG | - | chr5_3:9756918-9756937 | Msa0797560:intron | 45.0% |
| !! | TATAAAACAATATATAAATT+AGG | + | chr5_3:9754572-9754591 | None:intergenic | 5.0% |
| GGGAGAAACAGAACGAGAGA+AGG | - | chr5_3:9752562-9752581 | Msa0797560:CDS | 50.0% | |
| GAAACAGAACGAGAGAAGGG+AGG | - | chr5_3:9752566-9752585 | Msa0797560:CDS | 50.0% | |
| GGAAACAGTGGGTAACCAAG+AGG | - | chr5_3:9752634-9752653 | Msa0797560:CDS | 50.0% | |
| GTGGGTAACCAAGAGGAAGA+AGG | - | chr5_3:9752641-9752660 | Msa0797560:intron | 50.0% | |
| TTGGTACTGTTCTGTGCAGC+TGG | - | chr5_3:9753435-9753454 | Msa0797560:intron | 50.0% | |
| TGGTACTGTTCTGTGCAGCT+GGG | - | chr5_3:9753436-9753455 | Msa0797560:intron | 50.0% | |
| !! | CTGCTGCTTTAGTTCACTGG+CGG | - | chr5_3:9753627-9753646 | Msa0797560:intron | 50.0% |
| !! | ACACGCTCTAGAAAGGCCAT+AGG | + | chr5_3:9753730-9753749 | None:intergenic | 50.0% |
| ATGTGTCAACCTCTCTGCAC+AGG | - | chr5_3:9753890-9753909 | Msa0797560:CDS | 50.0% | |
| TCTGCACAGGCCAAAGTTGA+AGG | - | chr5_3:9753903-9753922 | Msa0797560:CDS | 50.0% | |
| ACAAGCACAACAGCAGAGGT+TGG | - | chr5_3:9754425-9754444 | Msa0797560:intron | 50.0% | |
| CAACAGCAGAGGTTGGACAA+AGG | - | chr5_3:9754432-9754451 | Msa0797560:intron | 50.0% | |
| TTGGCCTGATACGGCTGATA+CGG | - | chr5_3:9754624-9754643 | Msa0797560:intron | 50.0% | |
| GGATTTGGCCATAGATTCGG+AGG | - | chr5_3:9755149-9755168 | Msa0797560:intron | 50.0% | |
| GATGCTTCCCTACTTCAGCA+TGG | - | chr5_3:9755345-9755364 | Msa0797560:intron | 50.0% | |
| GGAATAGCCTCAAGGGTTGA+TGG | - | chr5_3:9755488-9755507 | Msa0797560:CDS | 50.0% | |
| !! | GCCTCAAGGGTTGATGGATA+TGG | - | chr5_3:9755494-9755513 | Msa0797560:CDS | 50.0% |
| !! | GCAAGAGGTACTAGCAGCAA+TGG | - | chr5_3:9756341-9756360 | Msa0797560:intron | 50.0% |
| GGGGACATTACCAAATCCAC+AGG | + | chr5_3:9756815-9756834 | None:intergenic | 50.0% | |
| GCAGGCAAGAAGGTTTCTAC+AGG | - | chr5_3:9756855-9756874 | Msa0797560:CDS | 50.0% | |
| CAACAACAGTGTGGAGAGCT+AGG | - | chr5_3:9756956-9756975 | Msa0797560:intron | 50.0% | |
| ! | AGGGAAAGTGACGGGGAGAA+AGG | - | chr5_3:9752528-9752547 | Msa0797560:CDS | 55.0% |
| ! | GGGAAAGTGACGGGGAGAAA+GGG | - | chr5_3:9752529-9752548 | Msa0797560:CDS | 55.0% |
| CGGGGAGAAAGGGAAAGTGA+CGG | - | chr5_3:9752539-9752558 | Msa0797560:CDS | 55.0% | |
| GGGGAGAAAGGGAAAGTGAC+GGG | - | chr5_3:9752540-9752559 | Msa0797560:CDS | 55.0% | |
| GGGAGAAAGGGAAAGTGACG+GGG | - | chr5_3:9752541-9752560 | Msa0797560:CDS | 55.0% | |
| GGAGAAAGGGAAAGTGACGG+GGG | - | chr5_3:9752542-9752561 | Msa0797560:CDS | 55.0% | |
| AAGGGAGGGAGAGGAGAAGA+AGG | - | chr5_3:9752581-9752600 | Msa0797560:CDS | 55.0% | |
| ! | TGTGCAGCTGGGTATTGTGC+TGG | - | chr5_3:9753447-9753466 | Msa0797560:intron | 55.0% |
| ! | GTGCAGCTGGGTATTGTGCT+GGG | - | chr5_3:9753448-9753467 | Msa0797560:intron | 55.0% |
| ! | GCTGGGTATTGTGCTGGGAA+AGG | - | chr5_3:9753453-9753472 | Msa0797560:intron | 55.0% |
| GTGCTGGGAAAGGCTAAGAG+TGG | - | chr5_3:9753463-9753482 | Msa0797560:intron | 55.0% | |
| !! | GGCCTTTCTAGAGCGTGTCA+AGG | - | chr5_3:9753732-9753751 | Msa0797560:intron | 55.0% |
| CAACTTTGGCCTGTGCAGAG+AGG | + | chr5_3:9753902-9753921 | None:intergenic | 55.0% | |
| GAGCACAAGCACAACAGCAG+AGG | - | chr5_3:9754421-9754440 | Msa0797560:intron | 55.0% | |
| CAGTCCGTATCAGCCGTATC+AGG | + | chr5_3:9754631-9754650 | None:intergenic | 55.0% | |
| CTGATACGGCTGATACGGAC+TGG | - | chr5_3:9754629-9754648 | Msa0797560:intron | 55.0% | |
| TAGTAACCTGCTGGCAGGAC+AGG | - | chr5_3:9756923-9756942 | Msa0797560:intron | 55.0% | |
| GAACGAGAGAAGGGAGGGAG+AGG | - | chr5_3:9752572-9752591 | Msa0797560:CDS | 60.0% | |
| CAAAGACCTGTCCTGCCAGC+AGG | + | chr5_3:9756932-9756951 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 9752448 | 9756984 | 9752448 | ID=Msa0797560;Name=Msa0797560 |
| chr5_3 | mRNA | 9752448 | 9756984 | 9752448 | ID=Msa0797560-mRNA-1;Parent=Msa0797560;Name=Msa0797560-mRNA-1;_AED=0.41;_eAED=0.42;_QI=0|0|0|0.5|0.85|0.75|8|0|259 |
| chr5_3 | exon | 9756977 | 9756984 | 9756977 | ID=Msa0797560-mRNA-1:exon:4197;Parent=Msa0797560-mRNA-1 |
| chr5_3 | exon | 9756746 | 9756908 | 9756746 | ID=Msa0797560-mRNA-1:exon:4196;Parent=Msa0797560-mRNA-1 |
| chr5_3 | exon | 9756238 | 9756303 | 9756238 | ID=Msa0797560-mRNA-1:exon:4195;Parent=Msa0797560-mRNA-1 |
| chr5_3 | exon | 9755939 | 9755978 | 9755939 | ID=Msa0797560-mRNA-1:exon:4194;Parent=Msa0797560-mRNA-1 |
| chr5_3 | exon | 9755605 | 9755746 | 9755605 | ID=Msa0797560-mRNA-1:exon:4193;Parent=Msa0797560-mRNA-1 |
| chr5_3 | exon | 9755454 | 9755520 | 9755454 | ID=Msa0797560-mRNA-1:exon:4192;Parent=Msa0797560-mRNA-1 |
| chr5_3 | exon | 9753874 | 9753956 | 9753874 | ID=Msa0797560-mRNA-1:exon:4191;Parent=Msa0797560-mRNA-1 |
| chr5_3 | exon | 9752448 | 9752658 | 9752448 | ID=Msa0797560-mRNA-1:exon:4190;Parent=Msa0797560-mRNA-1 |
| chr5_3 | CDS | 9756977 | 9756984 | 9756977 | ID=Msa0797560-mRNA-1:cds;Parent=Msa0797560-mRNA-1 |
| chr5_3 | CDS | 9756746 | 9756908 | 9756746 | ID=Msa0797560-mRNA-1:cds;Parent=Msa0797560-mRNA-1 |
| chr5_3 | CDS | 9756238 | 9756303 | 9756238 | ID=Msa0797560-mRNA-1:cds;Parent=Msa0797560-mRNA-1 |
| chr5_3 | CDS | 9755939 | 9755978 | 9755939 | ID=Msa0797560-mRNA-1:cds;Parent=Msa0797560-mRNA-1 |
| chr5_3 | CDS | 9755605 | 9755746 | 9755605 | ID=Msa0797560-mRNA-1:cds;Parent=Msa0797560-mRNA-1 |
| chr5_3 | CDS | 9755454 | 9755520 | 9755454 | ID=Msa0797560-mRNA-1:cds;Parent=Msa0797560-mRNA-1 |
| chr5_3 | CDS | 9753874 | 9753956 | 9753874 | ID=Msa0797560-mRNA-1:cds;Parent=Msa0797560-mRNA-1 |
| chr5_3 | CDS | 9752448 | 9752658 | 9752448 | ID=Msa0797560-mRNA-1:cds;Parent=Msa0797560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
