Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377680 | AVR48489.1 | 76.042 | 96 | 20 | 2 | 93 | 187 | 68 | 161 | 1.86e-38 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377680 | sp|P47192|VA722_ARATH | 61.458 | 96 | 34 | 2 | 93 | 187 | 64 | 157 | 5.13e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377680 | A0A2R3ZDI9 | 76.042 | 96 | 20 | 2 | 93 | 187 | 68 | 161 | 8.88e-39 | 144 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1377680 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0797560 | Msa1377680 | 0.892766 | 1.172467e-74 | -8.615850e-47 |
| Msa0338270 | Msa1377680 | 0.822257 | 2.609631e-53 | -8.615850e-47 |
| Msa0931700 | Msa1377680 | 0.995881 | 6.457798e-221 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377680 | MtrunA17_Chr2g0291651 | 75.000 | 96 | 21 | 2 | 93 | 187 | 68 | 161 | 3.34e-42 | 143 |
| Msa1377680 | MtrunA17_Chr5g0396491 | 89.855 | 69 | 7 | 0 | 191 | 259 | 413 | 481 | 6.00e-40 | 144 |
| Msa1377680 | MtrunA17_Chr4g0043521 | 67.708 | 96 | 28 | 2 | 93 | 187 | 66 | 159 | 7.75e-37 | 129 |
| Msa1377680 | MtrunA17_Chr4g0038851 | 71.014 | 69 | 20 | 0 | 191 | 259 | 404 | 472 | 3.14e-30 | 117 |
| Msa1377680 | MtrunA17_Chr4g0010211 | 55.670 | 97 | 40 | 2 | 92 | 187 | 2 | 96 | 2.60e-29 | 107 |
| Msa1377680 | MtrunA17_Chr4g0010271 | 57.292 | 96 | 38 | 2 | 93 | 187 | 64 | 157 | 4.60e-29 | 109 |
| Msa1377680 | MtrunA17_Chr1g0169851 | 66.197 | 71 | 24 | 0 | 93 | 163 | 15 | 85 | 8.40e-28 | 104 |
| Msa1377680 | MtrunA17_Chr7g0237521 | 66.197 | 71 | 24 | 0 | 93 | 163 | 64 | 134 | 1.42e-27 | 105 |
| Msa1377680 | MtrunA17_Chr1g0169861 | 57.292 | 96 | 38 | 2 | 93 | 187 | 114 | 207 | 1.85e-27 | 106 |
| Msa1377680 | MtrunA17_Chr7g0237561 | 55.208 | 96 | 40 | 2 | 93 | 187 | 64 | 157 | 3.42e-26 | 102 |
| Msa1377680 | MtrunA17_Chr2g0296021 | 60.563 | 71 | 28 | 0 | 93 | 163 | 64 | 134 | 2.89e-23 | 94.4 |
| Msa1377680 | MtrunA17_Chr1g0210521 | 39.130 | 115 | 48 | 4 | 93 | 187 | 64 | 176 | 1.52e-16 | 76.6 |
| Msa1377680 | MtrunA17_Chr3g0085681 | 45.588 | 68 | 36 | 1 | 191 | 258 | 372 | 438 | 1.24e-12 | 67.0 |
| Msa1377680 | MtrunA17_Chr7g0224271 | 35.632 | 87 | 49 | 2 | 175 | 256 | 589 | 673 | 3.46e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377680 | AT2G33120.1 | 61.458 | 96 | 34 | 2 | 93 | 187 | 64 | 157 | 5.22e-31 | 115 |
| Msa1377680 | AT2G33110.2 | 71.429 | 70 | 20 | 0 | 93 | 162 | 64 | 133 | 1.82e-30 | 112 |
| Msa1377680 | AT2G32670.1 | 76.056 | 71 | 17 | 0 | 93 | 163 | 129 | 199 | 1.87e-30 | 115 |
| Msa1377680 | AT1G04750.1 | 60.417 | 96 | 35 | 2 | 93 | 187 | 64 | 157 | 2.10e-30 | 113 |
| Msa1377680 | AT2G33120.2 | 60.417 | 96 | 35 | 2 | 93 | 187 | 72 | 165 | 2.44e-30 | 113 |
| Msa1377680 | AT2G33110.1 | 70.423 | 71 | 21 | 0 | 93 | 163 | 64 | 134 | 5.59e-30 | 112 |
| Msa1377680 | AT1G04760.2 | 73.239 | 71 | 19 | 0 | 93 | 163 | 64 | 134 | 9.89e-30 | 111 |
| Msa1377680 | AT1G04760.1 | 73.239 | 71 | 19 | 0 | 93 | 163 | 64 | 134 | 9.89e-30 | 111 |
| Msa1377680 | AT1G50420.1 | 66.667 | 69 | 23 | 0 | 191 | 259 | 414 | 482 | 1.75e-26 | 107 |
| Msa1377680 | AT4G15780.1 | 61.972 | 71 | 27 | 0 | 93 | 163 | 65 | 135 | 1.32e-23 | 94.7 |
| Msa1377680 | AT1G04750.2 | 59.259 | 81 | 30 | 2 | 108 | 187 | 1 | 79 | 4.06e-23 | 92.0 |
| Msa1377680 | AT1G04750.4 | 59.259 | 81 | 30 | 2 | 108 | 187 | 1 | 79 | 4.06e-23 | 92.0 |
| Msa1377680 | AT1G04750.3 | 59.259 | 81 | 30 | 2 | 108 | 187 | 1 | 79 | 4.06e-23 | 92.0 |
| Msa1377680 | AT3G54300.3 | 38.462 | 117 | 46 | 4 | 93 | 187 | 64 | 176 | 1.05e-14 | 72.0 |
| Msa1377680 | AT3G54300.2 | 38.462 | 117 | 46 | 4 | 93 | 187 | 64 | 176 | 1.05e-14 | 72.0 |
| Msa1377680 | AT3G54300.1 | 38.462 | 117 | 46 | 4 | 93 | 187 | 64 | 176 | 1.05e-14 | 72.0 |
Find 74 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTCCTTGTTAAGGCTAT+TGG | 0.247487 | tig0019970:-7097 | None:intergenic |
| AATAGCCTTAACAAGGAGTT+TGG | 0.289067 | tig0019970:+7099 | Msa1377680:CDS |
| CCAAGAGGAAGAAGGGAAAT+TGG | 0.317265 | tig0019970:+5943 | Msa1377680:CDS |
| TGCATATGTTCCTTCAACTT+TGG | 0.333932 | tig0019970:-7207 | None:intergenic |
| CCAATTTCCCTTCTTCCTCT+TGG | 0.334831 | tig0019970:-5943 | None:intergenic |
| AACTCCTTGTTAAGGCTATT+GGG | 0.344900 | tig0019970:-7096 | None:intergenic |
| AGACTTGATTCCTGTGGATT+TGG | 0.369989 | tig0019970:+10096 | Msa1377680:CDS |
| AGAAGGTTTCTACAGGGTTA+TGG | 0.375050 | tig0019970:+10156 | Msa1377680:CDS |
| AAGGGAGGGAGAGGAGAAGA+AGG | 0.375659 | tig0019970:+5875 | Msa1377680:CDS |
| TGTGCAGCTGGGTATTGTGC+TGG | 0.380986 | tig0019970:+6741 | Msa1377680:intron |
| CCTTGAGGCTATTCCATTTG+TGG | 0.382802 | tig0019970:-8774 | None:intergenic |
| TATAGAATGAGAGAAGAAAA+TGG | 0.386659 | tig0019970:+10189 | Msa1377680:CDS |
| TTAATGCAGGTTACCACAAA+TGG | 0.394064 | tig0019970:+8761 | Msa1377680:intron |
| GCCTCAAGGGTTGATGGATA+TGG | 0.399274 | tig0019970:+8788 | Msa1377680:CDS |
| AGGGAAAGTGACGGGGAGAA+AGG | 0.415410 | tig0019970:+5822 | Msa1377680:CDS |
| TTATATGAACAAGTTGGTCT+TGG | 0.432226 | tig0019970:+6435 | Msa1377680:CDS |
| AAGAAAAGAAGAGGAAACAG+TGG | 0.433575 | tig0019970:+5916 | Msa1377680:CDS |
| CAGTATACGATAATAGCTTA+AGG | 0.434273 | tig0019970:-10127 | None:intergenic |
| TAGTAACCTGCTGGCAGGAC+AGG | 0.439719 | tig0019970:+10217 | Msa1377680:CDS |
| TGAACAAGTTGGTCTTGGTT+GGG | 0.442711 | tig0019970:+6440 | Msa1377680:CDS |
| GAACGAGAGAAGGGAGGGAG+AGG | 0.446128 | tig0019970:+5866 | Msa1377680:CDS |
| GGGGAGAAAGGGAAAGTGAC+GGG | 0.449423 | tig0019970:+5834 | Msa1377680:CDS |
| ATGAACAAGTTGGTCTTGGT+TGG | 0.452022 | tig0019970:+6439 | Msa1377680:CDS |
| GGGAAAGTGACGGGGAGAAA+GGG | 0.453924 | tig0019970:+5823 | Msa1377680:CDS |
| GGGAGAAAGGGAAAGTGACG+GGG | 0.454412 | tig0019970:+5835 | Msa1377680:CDS |
| AGGATATTATATGAACAAGT+TGG | 0.456734 | tig0019970:+6429 | Msa1377680:CDS |
| GGAATAGCCTCAAGGGTTGA+TGG | 0.463256 | tig0019970:+8782 | Msa1377680:CDS |
| AACTAGAAGACAGGTTCCTA+TGG | 0.467041 | tig0019970:+7005 | Msa1377680:CDS |
| GCAGGCAAGAAGGTTTCTAC+AGG | 0.468697 | tig0019970:+10149 | Msa1377680:CDS |
| GGGAGAAACAGAACGAGAGA+AGG | 0.471024 | tig0019970:+5856 | Msa1377680:CDS |
| CAACAACAGTGTGGAGAGCT+AGG | 0.475812 | tig0019970:+10250 | Msa1377680:CDS |
| TCTGCACAGGCCAAAGTTGA+AGG | 0.478923 | tig0019970:+7197 | Msa1377680:intron |
| AGTACCCAAACTCCTTGTTA+AGG | 0.484076 | tig0019970:-7104 | None:intergenic |
| ATCCTTGACACGCTCTAGAA+AGG | 0.487141 | tig0019970:-7028 | None:intergenic |
| GGAGAAACAGAACGAGAGAA+GGG | 0.497591 | tig0019970:+5857 | Msa1377680:CDS |
| ATAGCCTTAACAAGGAGTTT+GGG | 0.499292 | tig0019970:+7100 | Msa1377680:CDS |
| AGTATACGATAATAGCTTAA+GGG | 0.507427 | tig0019970:-10126 | None:intergenic |
| ACAGAAATAGGGAAAGTGAC+GGG | 0.510497 | tig0019970:+5814 | Msa1377680:intron |
| CAAAGACCTGTCCTGCCAGC+AGG | 0.516037 | tig0019970:-10223 | None:intergenic |
| AAACAGAACGAGAGAAGGGA+GGG | 0.518245 | tig0019970:+5861 | Msa1377680:CDS |
| GTGCAGCTGGGTATTGTGCT+GGG | 0.521168 | tig0019970:+6742 | Msa1377680:intron |
| GTCAAAATATGGTGGTGAAA+AGG | 0.526879 | tig0019970:+7059 | Msa1377680:CDS |
| GGAGAAAGGGAAAGTGACGG+GGG | 0.540858 | tig0019970:+5836 | Msa1377680:CDS |
| ATCGTATACTGCAGGCAAGA+AGG | 0.553817 | tig0019970:+10139 | Msa1377680:CDS |
| GTGGGTAACCAAGAGGAAGA+AGG | 0.555031 | tig0019970:+5935 | Msa1377680:CDS |
| CTACAGGGTTATGGTTGTGA+CGG | 0.558409 | tig0019970:+10165 | Msa1377680:CDS |
| GAAACAGAACGAGAGAAGGG+AGG | 0.558418 | tig0019970:+5860 | Msa1377680:CDS |
| GAAGAAGGAAAAGAAGCCGA+TGG | 0.563967 | tig0019970:+5890 | Msa1377680:CDS |
| TTGTTCATATAATATCCTAA+AGG | 0.569597 | tig0019970:-6424 | None:intergenic |
| AAGCTATTATCGTATACTGC+AGG | 0.573353 | tig0019970:+10131 | Msa1377680:CDS |
| AGAAAAGAAGAGGAAACAGT+GGG | 0.574477 | tig0019970:+5917 | Msa1377680:CDS |
| CACAAATGGAATAGCCTCAA+GGG | 0.574895 | tig0019970:+8775 | Msa1377680:CDS |
| GCTGGGTATTGTGCTGGGAA+AGG | 0.576415 | tig0019970:+6747 | Msa1377680:intron |
| CGATGGAGAAAGAAAAGAAG+AGG | 0.576550 | tig0019970:+5907 | Msa1377680:CDS |
| AAATTGGAGAAGAATATTCA+AGG | 0.576564 | tig0019970:+5959 | Msa1377680:CDS |
| TGGTGTTGATCTCAAGAAAG+TGG | 0.588028 | tig0019970:+8808 | Msa1377680:CDS |
| AGATGAATCAACTAGAAGAC+AGG | 0.588785 | tig0019970:+6996 | Msa1377680:CDS |
| CCACAAATGGAATAGCCTCA+AGG | 0.595503 | tig0019970:+8774 | Msa1377680:CDS |
| TGGGTAACCAAGAGGAAGAA+GGG | 0.601125 | tig0019970:+5936 | Msa1377680:CDS |
| GGGGACATTACCAAATCCAC+AGG | 0.602260 | tig0019970:-10106 | None:intergenic |
| GTATACGATAATAGCTTAAG+GGG | 0.604591 | tig0019970:-10125 | None:intergenic |
| TACAGAAATAGGGAAAGTGA+CGG | 0.610620 | tig0019970:+5813 | Msa1377680:intron |
| CAAGATAAGCAAGCTTGCAA+AGG | 0.611690 | tig0019970:+7251 | Msa1377680:CDS |
| TCCTCCCAATAGCCTTAACA+AGG | 0.621229 | tig0019970:+7092 | Msa1377680:CDS |
| CAGAAATAGGGAAAGTGACG+GGG | 0.627024 | tig0019970:+5815 | Msa1377680:intron |
| GGCCTTTCTAGAGCGTGTCA+AGG | 0.628423 | tig0019970:+7026 | Msa1377680:CDS |
| CGGGGAGAAAGGGAAAGTGA+CGG | 0.630391 | tig0019970:+5833 | Msa1377680:CDS |
| TCCTTGTTAAGGCTATTGGG+AGG | 0.643952 | tig0019970:-7093 | None:intergenic |
| CAGGCAAGAAGGTTTCTACA+GGG | 0.650713 | tig0019970:+10150 | Msa1377680:CDS |
| TTTATGAGACTTGATTCCTG+TGG | 0.650871 | tig0019970:+10090 | Msa1377680:CDS |
| ACACGCTCTAGAAAGGCCAT+AGG | 0.658618 | tig0019970:-7021 | None:intergenic |
| GGAAACAGTGGGTAACCAAG+AGG | 0.685707 | tig0019970:+5928 | Msa1377680:CDS |
| ACCATATCCATCAACCCTTG+AGG | 0.687454 | tig0019970:-8789 | None:intergenic |
| GTGCTGGGAAAGGCTAAGAG+TGG | 0.721903 | tig0019970:+6757 | Msa1377680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTCTATAAATATTTC+TGG | + | tig0019970:8617-8636 | Msa1377680:intron | 10.0% |
| !! | ATTGTAAGAAAATAAAAAAA+AGG | - | tig0019970:9376-9395 | None:intergenic | 10.0% |
| !!! | TATAAAATTGATTACCTTTT+TGG | + | tig0019970:7463-7482 | Msa1377680:intron | 15.0% |
| !! | AAAATTACTATCTACAATTT+AGG | - | tig0019970:8011-8030 | None:intergenic | 15.0% |
| !!! | TAATTTTGACCAAAATAATT+TGG | + | tig0019970:8024-8043 | Msa1377680:intron | 15.0% |
| !! | AGATAAAATTCAAATGAAAT+GGG | - | tig0019970:8519-8538 | None:intergenic | 15.0% |
| !! | TAGATAAAATTCAAATGAAA+TGG | - | tig0019970:8520-8539 | None:intergenic | 15.0% |
| !! | ATTTGAATTGATAAATAGTA+GGG | - | tig0019970:8581-8600 | None:intergenic | 15.0% |
| !! | TATTTGAATTGATAAATAGT+AGG | - | tig0019970:8582-8601 | None:intergenic | 15.0% |
| !!! | ACTCTATTTATTTTAAGTAT+AGG | - | tig0019970:8735-8754 | None:intergenic | 15.0% |
| !! | CTATAAAACAAATCAAAAAA+GGG | - | tig0019970:8998-9017 | None:intergenic | 15.0% |
| !!! | CTTTTTTGATTTGTTTTATA+GGG | + | tig0019970:8997-9016 | Msa1377680:intron | 15.0% |
| !! | AAATCAAAAACTAAAATTTG+GGG | - | tig0019970:9048-9067 | None:intergenic | 15.0% |
| !! | CAAATCAAAAACTAAAATTT+GGG | - | tig0019970:9049-9068 | None:intergenic | 15.0% |
| !! | ACAAATCAAAAACTAAAATT+TGG | - | tig0019970:9050-9069 | None:intergenic | 15.0% |
| !!! | AGTTTTTGATTTGTTTTATT+CGG | + | tig0019970:9056-9075 | Msa1377680:intron | 15.0% |
| !!! | AGTTTGATTTTAAAATTAGA+AGG | - | tig0019970:9267-9286 | None:intergenic | 15.0% |
| !!! | GATTTTGATACATTTTTTTA+TGG | + | tig0019970:9930-9949 | Msa1377680:intron | 15.0% |
| !! | AATTGATTGATGAATAATAT+CGG | - | tig0019970:10037-10056 | None:intergenic | 15.0% |
| !!! | TTGTGATTTTATACAGAAAT+AGG | + | tig0019970:5802-5821 | Msa1377680:intron | 20.0% |
| !!! | TGTGATTTTATACAGAAATA+GGG | + | tig0019970:5803-5822 | Msa1377680:intron | 20.0% |
| !!! | TATTTTTGTTTTTGCTTTTG+TGG | + | tig0019970:6111-6130 | Msa1377680:intron | 20.0% |
| !!! | TTTTTTGTTGATTCTGTTTT+TGG | + | tig0019970:6152-6171 | Msa1377680:intron | 20.0% |
| !! | TTTGTGAAATTGACTAAAAT+TGG | + | tig0019970:6277-6296 | Msa1377680:intron | 20.0% |
| !! | GTAAAAATAGAATTTCATAC+TGG | - | tig0019970:6398-6417 | None:intergenic | 20.0% |
| !! | TTGTTCATATAATATCCTAA+AGG | - | tig0019970:6427-6446 | None:intergenic | 20.0% |
| !! | ATTCAATTACCACATATTAA+AGG | - | tig0019970:6691-6710 | None:intergenic | 20.0% |
| !! | TACCAAATAAACTTGTAAAA+GGG | - | tig0019970:6715-6734 | None:intergenic | 20.0% |
| !! | TAAGATGATAATTTCCTTTA+TGG | - | tig0019970:6821-6840 | None:intergenic | 20.0% |
| !! | TTTGATGGGATAAAAATTTA+TGG | + | tig0019970:7525-7544 | Msa1377680:intron | 20.0% |
| !! | TTGATGGGATAAAAATTTAT+GGG | + | tig0019970:7526-7545 | Msa1377680:intron | 20.0% |
| !! | GAAAATAAAAAAGAATGAAG+GGG | - | tig0019970:7836-7855 | None:intergenic | 20.0% |
| !! | GGAAAATAAAAAAGAATGAA+GGG | - | tig0019970:7837-7856 | None:intergenic | 20.0% |
| !! | AGGAAAATAAAAAAGAATGA+AGG | - | tig0019970:7838-7857 | None:intergenic | 20.0% |
| !! | AATATATAAATTAGGCTCAA+AGG | - | tig0019970:7858-7877 | None:intergenic | 20.0% |
| !! | ATATACATTCATTTAACCAT+TGG | + | tig0019970:7883-7902 | Msa1377680:intron | 20.0% |
| !! | CACTACTTAATTAATCAATA+AGG | + | tig0019970:8234-8253 | Msa1377680:intron | 20.0% |
| !!! | TATTGATTCTTAGTTAATTG+AGG | + | tig0019970:8275-8294 | Msa1377680:intron | 20.0% |
| !!! | TTTTATCTTTGTTGTTAGTT+TGG | + | tig0019970:8422-8441 | Msa1377680:intron | 20.0% |
| !! | CCTATAAAACAAATCAAAAA+AGG | - | tig0019970:8999-9018 | None:intergenic | 20.0% |
| !!! | CCTTTTTTGATTTGTTTTAT+AGG | + | tig0019970:8996-9015 | Msa1377680:intron | 20.0% |
| !!! | TTATTTTCTTACAATTTTGC+AGG | + | tig0019970:9381-9400 | Msa1377680:intron | 20.0% |
| !! | GCAATAGTAAATGTATAAAA+AGG | + | tig0019970:9865-9884 | Msa1377680:intron | 20.0% |
| !!! | TTGATACATTTTTTTATGGT+TGG | + | tig0019970:9934-9953 | Msa1377680:intron | 20.0% |
| !!! | AGTTTTTCATGTCTTTATTA+GGG | - | tig0019970:10060-10079 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCATGTCTTTATT+AGG | - | tig0019970:10061-10080 | None:intergenic | 20.0% |
| ! | AAATTGGAGAAGAATATTCA+AGG | + | tig0019970:5959-5978 | Msa1377680:CDS | 25.0% |
| !! | CTTGATGACTTAAAAATTGA+TGG | + | tig0019970:6318-6337 | Msa1377680:intron | 25.0% |
| !!! | TGAAATTCTATTTTTACTGC+AGG | + | tig0019970:6401-6420 | Msa1377680:intron | 25.0% |
| ! | AGGATATTATATGAACAAGT+TGG | + | tig0019970:6429-6448 | Msa1377680:CDS | 25.0% |
| !!! | TACTGGTTCATATTTTGTAA+TGG | - | tig0019970:6472-6491 | None:intergenic | 25.0% |
| !!! | TTTTTTCCTAATCATTCTGA+TGG | + | tig0019970:6593-6612 | Msa1377680:intron | 25.0% |
| !!! | TGATGGAGAATTGTTTTTAA+AGG | + | tig0019970:6610-6629 | Msa1377680:intron | 25.0% |
| ! | AATCTTAATATCAAGCTCTT+GGG | - | tig0019970:6649-6668 | None:intergenic | 25.0% |
| ! | AAATCTTAATATCAAGCTCT+TGG | - | tig0019970:6650-6669 | None:intergenic | 25.0% |
| !! | TTCCCTTTTACAAGTTTATT+TGG | + | tig0019970:6710-6729 | Msa1377680:intron | 25.0% |
| ! | GTACCAAATAAACTTGTAAA+AGG | - | tig0019970:6716-6735 | None:intergenic | 25.0% |
| ! | TAATAGGAGATTATCATCTT+AGG | + | tig0019970:6792-6811 | Msa1377680:intron | 25.0% |
| !! | AGAAGAAATGTCTAACTTTT+TGG | + | tig0019970:6949-6968 | Msa1377680:intron | 25.0% |
| !! | GAAGAAATGTCTAACTTTTT+GGG | + | tig0019970:6950-6969 | Msa1377680:intron | 25.0% |
| !! | GATGATTTTGTGTCAAAATA+TGG | + | tig0019970:7048-7067 | Msa1377680:CDS | 25.0% |
| !!! | TAAACTTTTGGAGTTTAATC+TGG | + | tig0019970:7139-7158 | Msa1377680:intron | 25.0% |
| !! | CTGGTAGACTATTTATATTT+TGG | + | tig0019970:7158-7177 | Msa1377680:intron | 25.0% |
| !!! | TACCTTTTTGGTTATATCAT+TGG | + | tig0019970:7475-7494 | Msa1377680:intron | 25.0% |
| ! | TGCTTGAATTGTTTATTTGA+TGG | + | tig0019970:7510-7529 | Msa1377680:intron | 25.0% |
| ! | GCTTGAATTGTTTATTTGAT+GGG | + | tig0019970:7511-7530 | Msa1377680:intron | 25.0% |
| ! | AAAGAAAATGTAGAGAAAGA+AGG | - | tig0019970:7632-7651 | None:intergenic | 25.0% |
| ! | TTCGAACATTAAGAAAAGAA+GGG | - | tig0019970:7805-7824 | None:intergenic | 25.0% |
| ! | ATTCGAACATTAAGAAAAGA+AGG | - | tig0019970:7806-7825 | None:intergenic | 25.0% |
| ! | TTGAAAGCTAGTTAGAAAAA+AGG | - | tig0019970:8125-8144 | None:intergenic | 25.0% |
| ! | ATAAGGCAGTAAACAATTAT+TGG | + | tig0019970:8251-8270 | Msa1377680:intron | 25.0% |
| ! | ATTATTTGAATCATTCGCTA+TGG | + | tig0019970:8299-8318 | Msa1377680:intron | 25.0% |
| ! | AACAACCAAATGTATCAAAA+AGG | - | tig0019970:8491-8510 | None:intergenic | 25.0% |
| !! | TATTATGACATTTTTGCAAG+AGG | - | tig0019970:8917-8936 | None:intergenic | 25.0% |
| !! | ACAATTTTGCAGGTTTTTTA+TGG | + | tig0019970:9391-9410 | Msa1377680:intron | 25.0% |
| !! | TTTTATGGAGAAATTCAGAT+TGG | + | tig0019970:9406-9425 | Msa1377680:intron | 25.0% |
| ! | AATAGCAACTTACAAATATG+AGG | - | tig0019970:9668-9687 | None:intergenic | 25.0% |
| ! | TATCCTTTCATTCAATCATA+TGG | + | tig0019970:9790-9809 | Msa1377680:intron | 25.0% |
| ! | TAGCAATTAAATTGTTGCAT+GGG | + | tig0019970:9888-9907 | Msa1377680:intron | 25.0% |
| ! | GTGTACAAACTTGATAAAAA+AGG | + | tig0019970:10009-10028 | Msa1377680:intron | 25.0% |
| ! | GACATGAAAAACTTCATAAA+TGG | + | tig0019970:10067-10086 | Msa1377680:intron | 25.0% |
| ! | AGTATACGATAATAGCTTAA+GGG | - | tig0019970:10129-10148 | None:intergenic | 25.0% |
| ! | TATAGAATGAGAGAAGAAAA+TGG | + | tig0019970:10189-10208 | Msa1377680:CDS | 25.0% |
| ! | GTGATTTCTTGCTATATTGT+GGG | + | tig0019970:5981-6000 | Msa1377680:intron | 30.0% |
| ATATTGTGGGAATGCATAAT+TGG | + | tig0019970:5994-6013 | Msa1377680:intron | 30.0% | |
| TGGCTTATGATGAATATTCA+AGG | + | tig0019970:6014-6033 | Msa1377680:intron | 30.0% | |
| !!! | TTGTTTTTGCTTTTGTGGTT+TGG | + | tig0019970:6116-6135 | Msa1377680:intron | 30.0% |
| !!! | TTTTGAGATGAAATCACACT+TGG | + | tig0019970:6234-6253 | Msa1377680:intron | 30.0% |
| CTTGGTATAAATTGCACATA+AGG | + | tig0019970:6252-6271 | Msa1377680:intron | 30.0% | |
| TGATATATGAATCTGTTCAG+TGG | + | tig0019970:6358-6377 | Msa1377680:intron | 30.0% | |
| !! | TTATATGAACAAGTTGGTCT+TGG | + | tig0019970:6435-6454 | Msa1377680:CDS | 30.0% |
| CTATTCCATCTTTCTAAGTA+TGG | - | tig0019970:6505-6524 | None:intergenic | 30.0% | |
| AATTCTCCATCAGAATGATT+AGG | - | tig0019970:6602-6621 | None:intergenic | 30.0% | |
| CACAATGTTCCTTTAATATG+TGG | + | tig0019970:6679-6698 | Msa1377680:intron | 30.0% | |
| ATAATCTCCTATTAGTACTC+TGG | - | tig0019970:6786-6805 | None:intergenic | 30.0% | |
| ATCATCTTAGGTAACCATAA+AGG | + | tig0019970:6804-6823 | Msa1377680:intron | 30.0% | |
| ! | GATTTTGTGTCAAAATATGG+TGG | + | tig0019970:7051-7070 | Msa1377680:CDS | 30.0% |
| !! | AACTTTCTGCTCTAAACTTT+TGG | + | tig0019970:7127-7146 | Msa1377680:intron | 30.0% |
| ! | CATGATGGAGAATATTGAAA+AGG | + | tig0019970:7306-7325 | Msa1377680:intron | 30.0% |
| TCAAGTCAATGTTATCATAG+AGG | + | tig0019970:7350-7369 | Msa1377680:intron | 30.0% | |
| TCATTGATGAGAATTGATAG+AGG | + | tig0019970:7376-7395 | Msa1377680:intron | 30.0% | |
| CACCAATGATATAACCAAAA+AGG | - | tig0019970:7480-7499 | None:intergenic | 30.0% | |
| TCGAACATTAAGAAAAGAAG+GGG | - | tig0019970:7804-7823 | None:intergenic | 30.0% | |
| CCAAAATTCAGAAATTCCAA+TGG | - | tig0019970:7902-7921 | None:intergenic | 30.0% | |
| ! | CCATTGGAATTTCTGAATTT+TGG | + | tig0019970:7899-7918 | Msa1377680:intron | 30.0% |
| ! | CATAGTCAAGATAACTTTTC+AGG | - | tig0019970:8054-8073 | None:intergenic | 30.0% |
| TTCTATTAATTGCCTCACTA+TGG | + | tig0019970:8099-8118 | Msa1377680:intron | 30.0% | |
| TTAACTACAGTAGAGATTCT+TGG | + | tig0019970:8160-8179 | Msa1377680:intron | 30.0% | |
| AAATCATTAGAGAAATGCCA+AGG | - | tig0019970:8328-8347 | None:intergenic | 30.0% | |
| !! | CTTTGTTGTTAGTTTGGATT+TGG | + | tig0019970:8428-8447 | Msa1377680:intron | 30.0% |
| CCAAATGTATCAAAAAGGAT+AGG | - | tig0019970:8486-8505 | None:intergenic | 30.0% | |
| ! | CCTATCCTTTTTGATACATT+TGG | + | tig0019970:8483-8502 | Msa1377680:intron | 30.0% |
| ! | ATAGAGTTTTTCCTTAATGC+AGG | + | tig0019970:8748-8767 | Msa1377680:intron | 30.0% |
| !! | TGAATGAGACTGATTTTCTT+AGG | + | tig0019970:8951-8970 | Msa1377680:intron | 30.0% |
| !! | GAATGAGACTGATTTTCTTA+GGG | + | tig0019970:8952-8971 | Msa1377680:intron | 30.0% |
| GTTAGCATTGTTATCACAAT+TGG | - | tig0019970:9175-9194 | None:intergenic | 30.0% | |
| ! | ATGCTAACATCATTTTCCAT+TGG | + | tig0019970:9187-9206 | Msa1377680:intron | 30.0% |
| TAGTAAAATGTCCTCTTTCT+AGG | + | tig0019970:9210-9229 | Msa1377680:intron | 30.0% | |
| AATTCAGATTGGTACTCATT+TGG | + | tig0019970:9417-9436 | Msa1377680:intron | 30.0% | |
| ATTCAGATTGGTACTCATTT+GGG | + | tig0019970:9418-9437 | Msa1377680:intron | 30.0% | |
| ACATTCAACACATACAAATC+AGG | - | tig0019970:9526-9545 | None:intergenic | 30.0% | |
| ! | GTATGTGTTGAATGTTGTTT+AGG | + | tig0019970:9531-9550 | Msa1377680:intron | 30.0% |
| ACACCATATGATTGAATGAA+AGG | - | tig0019970:9796-9815 | None:intergenic | 30.0% | |
| ! | ACTGTAAATACACTTTTGCT+AGG | - | tig0019970:9824-9843 | None:intergenic | 30.0% |
| GTAGCAATTAAATTGTTGCA+TGG | + | tig0019970:9887-9906 | Msa1377680:intron | 30.0% | |
| GTATACGATAATAGCTTAAG+GGG | - | tig0019970:10128-10147 | None:intergenic | 30.0% | |
| CAGTATACGATAATAGCTTA+AGG | - | tig0019970:10130-10149 | None:intergenic | 30.0% | |
| TACAGAAATAGGGAAAGTGA+CGG | + | tig0019970:5813-5832 | Msa1377680:intron | 35.0% | |
| ! | CTCTTCTTTTCTTTCTCCAT+CGG | - | tig0019970:5909-5928 | None:intergenic | 35.0% |
| AAGAAAAGAAGAGGAAACAG+TGG | + | tig0019970:5916-5935 | Msa1377680:CDS | 35.0% | |
| AGAAAAGAAGAGGAAACAGT+GGG | + | tig0019970:5917-5936 | Msa1377680:CDS | 35.0% | |
| ! | GGTGATTTCTTGCTATATTG+TGG | + | tig0019970:5980-5999 | Msa1377680:intron | 35.0% |
| !! | TATTTTTACTGCAGGCCTTT+AGG | + | tig0019970:6409-6428 | Msa1377680:intron | 35.0% |
| TCCTACCATACTTAGAAAGA+TGG | + | tig0019970:6497-6516 | Msa1377680:intron | 35.0% | |
| TCCATCTTTCTAAGTATGGT+AGG | - | tig0019970:6501-6520 | None:intergenic | 35.0% | |
| ! | TCCAGCATTTATGTTTTCAG+AGG | + | tig0019970:6849-6868 | Msa1377680:intron | 35.0% |
| ! | ACCTCTGAAAACATAAATGC+TGG | - | tig0019970:6853-6872 | None:intergenic | 35.0% |
| AGATGAATCAACTAGAAGAC+AGG | + | tig0019970:6996-7015 | Msa1377680:CDS | 35.0% | |
| ! | GTCAAAATATGGTGGTGAAA+AGG | + | tig0019970:7059-7078 | Msa1377680:CDS | 35.0% |
| AACTCCTTGTTAAGGCTATT+GGG | - | tig0019970:7099-7118 | None:intergenic | 35.0% | |
| AAACTCCTTGTTAAGGCTAT+TGG | - | tig0019970:7100-7119 | None:intergenic | 35.0% | |
| ! | AATAGCCTTAACAAGGAGTT+TGG | + | tig0019970:7099-7118 | Msa1377680:CDS | 35.0% |
| ! | ATAGCCTTAACAAGGAGTTT+GGG | + | tig0019970:7100-7119 | Msa1377680:CDS | 35.0% |
| TGCATATGTTCCTTCAACTT+TGG | - | tig0019970:7210-7229 | None:intergenic | 35.0% | |
| !! | TGAAGTTAAAGGTGTCATGA+TGG | + | tig0019970:7291-7310 | Msa1377680:intron | 35.0% |
| TGCTAATTCTCTAACACAGA+TGG | + | tig0019970:7418-7437 | Msa1377680:intron | 35.0% | |
| !!! | CTCTAACACAGATGGTTTTT+TGG | + | tig0019970:7426-7445 | Msa1377680:intron | 35.0% |
| ATGTAGAGAAAGAAGGAAGA+GGG | - | tig0019970:7625-7644 | None:intergenic | 35.0% | |
| AATGTAGAGAAAGAAGGAAG+AGG | - | tig0019970:7626-7645 | None:intergenic | 35.0% | |
| !! | TTCTGAATTTTGGCCTGATA+CGG | + | tig0019970:7909-7928 | Msa1377680:intron | 35.0% |
| ! | TCAGGCACACCAAATTATTT+TGG | - | tig0019970:8036-8055 | None:intergenic | 35.0% |
| TTAGAAAAAAGGCCATAGTG+AGG | - | tig0019970:8114-8133 | None:intergenic | 35.0% | |
| TTTGGATTTGGCCATAGATT+CGG | + | tig0019970:8440-8459 | Msa1377680:intron | 35.0% | |
| ATTAAACTCCTCCGAATCTA+TGG | - | tig0019970:8454-8473 | None:intergenic | 35.0% | |
| ATTTGTGGTAACCTGCATTA+AGG | - | tig0019970:8762-8781 | None:intergenic | 35.0% | |
| TTAATGCAGGTTACCACAAA+TGG | + | tig0019970:8761-8780 | Msa1377680:intron | 35.0% | |
| GTGGTAGAAAAAGTAGAACA+TGG | + | tig0019970:8827-8846 | Msa1377680:CDS | 35.0% | |
| ! | AGTAGAACATGGTTTGTAAC+TGG | + | tig0019970:8838-8857 | Msa1377680:intron | 35.0% |
| ACAAATACTCAAGAAGCCAT+TGG | - | tig0019970:8892-8911 | None:intergenic | 35.0% | |
| ! | ACTAAAATTTGGGGTTCAAC+TGG | - | tig0019970:9039-9058 | None:intergenic | 35.0% |
| ! | AGAGGACATTTTACTACCAA+TGG | - | tig0019970:9206-9225 | None:intergenic | 35.0% |
| TAACAAACTCTCCTAGAAAG+AGG | - | tig0019970:9224-9243 | None:intergenic | 35.0% | |
| ACAGACTTATCACAATTGAG+AGG | - | tig0019970:9318-9337 | None:intergenic | 35.0% | |
| !!! | ATTTGGGAAGTTGTTTTTGC+AGG | + | tig0019970:9434-9453 | Msa1377680:intron | 35.0% |
| CATACAAATCAGGACATATG+AGG | - | tig0019970:9516-9535 | None:intergenic | 35.0% | |
| ! | TGTGTTGAATGTTGTTTAGG+AGG | + | tig0019970:9534-9553 | Msa1377680:intron | 35.0% |
| ! | GTGTTGAATGTTGTTTAGGA+GGG | + | tig0019970:9535-9554 | Msa1377680:intron | 35.0% |
| ! | TGTTGAATGTTGTTTAGGAG+GGG | + | tig0019970:9536-9555 | Msa1377680:intron | 35.0% |
| TGCTTCCAATTCACATGAAT+AGG | + | tig0019970:9565-9584 | Msa1377680:intron | 35.0% | |
| GCTTCCAATTCACATGAATA+GGG | + | tig0019970:9566-9585 | Msa1377680:intron | 35.0% | |
| CTTCCAATTCACATGAATAG+GGG | + | tig0019970:9567-9586 | Msa1377680:intron | 35.0% | |
| TAGTTACATGCCTCTGAATT+TGG | + | tig0019970:9714-9733 | Msa1377680:intron | 35.0% | |
| ! | ATTGTTGCATGGGTTATGAT+AGG | + | tig0019970:9898-9917 | Msa1377680:intron | 35.0% |
| TTTATGAGACTTGATTCCTG+TGG | + | tig0019970:10090-10109 | Msa1377680:CDS | 35.0% | |
| AAGCTATTATCGTATACTGC+AGG | + | tig0019970:10131-10150 | Msa1377680:CDS | 35.0% | |
| !!! | CTTTGTTTTCAACAACAGTG+TGG | + | tig0019970:10241-10260 | Msa1377680:CDS | 35.0% |
| ACAGAAATAGGGAAAGTGAC+GGG | + | tig0019970:5814-5833 | Msa1377680:intron | 40.0% | |
| CGATGGAGAAAGAAAAGAAG+AGG | + | tig0019970:5907-5926 | Msa1377680:CDS | 40.0% | |
| ! | CATTCAATCTGAGACATGCA+TGG | - | tig0019970:6070-6089 | None:intergenic | 40.0% |
| !!! | CTTTTGTGGTTTGGTGATTC+TGG | + | tig0019970:6125-6144 | Msa1377680:intron | 40.0% |
| !! | ATGAACAAGTTGGTCTTGGT+TGG | + | tig0019970:6439-6458 | Msa1377680:CDS | 40.0% |
| !! | TGAACAAGTTGGTCTTGGTT+GGG | + | tig0019970:6440-6459 | Msa1377680:CDS | 40.0% |
| AGTATGGTAGGATGACTTAC+TGG | - | tig0019970:6489-6508 | None:intergenic | 40.0% | |
| AACTAGAAGACAGGTTCCTA+TGG | + | tig0019970:7005-7024 | Msa1377680:CDS | 40.0% | |
| AGTACCCAAACTCCTTGTTA+AGG | - | tig0019970:7107-7126 | None:intergenic | 40.0% | |
| CAAGATAAGCAAGCTTGCAA+AGG | + | tig0019970:7251-7270 | Msa1377680:CDS | 40.0% | |
| !! | GCTCAGGTTTCTGAAGTTAA+AGG | + | tig0019970:7280-7299 | Msa1377680:intron | 40.0% |
| TGTAGAGAAAGAAGGAAGAG+GGG | - | tig0019970:7624-7643 | None:intergenic | 40.0% | |
| CTCTTAATCACTACCTGTAG+TGG | - | tig0019970:7698-7717 | None:intergenic | 40.0% | |
| GACTGGATTTGTCTCAAGTA+TGG | + | tig0019970:7940-7959 | Msa1377680:intron | 40.0% | |
| ATCATTCGCTATGGTTTCCT+TGG | + | tig0019970:8308-8327 | Msa1377680:intron | 40.0% | |
| TGTGATACCATGCTGAAGTA+GGG | - | tig0019970:8649-8668 | None:intergenic | 40.0% | |
| ATGTGATACCATGCTGAAGT+AGG | - | tig0019970:8650-8669 | None:intergenic | 40.0% | |
| CACAAATGGAATAGCCTCAA+GGG | + | tig0019970:8775-8794 | Msa1377680:CDS | 40.0% | |
| !! | TGGTGTTGATCTCAAGAAAG+TGG | + | tig0019970:8808-8827 | Msa1377680:CDS | 40.0% |
| ATAGACAAAGCAGTATACCC+AGG | - | tig0019970:8864-8883 | None:intergenic | 40.0% | |
| GCTTTGTCTATTGCAACCAA+TGG | + | tig0019970:8873-8892 | Msa1377680:intron | 40.0% | |
| CATCCCCTATTCATGTGAAT+TGG | - | tig0019970:9573-9592 | None:intergenic | 40.0% | |
| CAATTCACATGAATAGGGGA+TGG | + | tig0019970:9571-9590 | Msa1377680:intron | 40.0% | |
| GATGTGTGAACCAAATTCAG+AGG | - | tig0019970:9727-9746 | None:intergenic | 40.0% | |
| AGACTTGATTCCTGTGGATT+TGG | + | tig0019970:10096-10115 | Msa1377680:CDS | 40.0% | |
| AGAAGGTTTCTACAGGGTTA+TGG | + | tig0019970:10156-10175 | Msa1377680:CDS | 40.0% | |
| !!! | ATGGTTTTGTAGTAACCTGC+TGG | + | tig0019970:10208-10227 | Msa1377680:CDS | 40.0% |
| CAGAAATAGGGAAAGTGACG+GGG | + | tig0019970:5815-5834 | Msa1377680:intron | 45.0% | |
| GGAGAAACAGAACGAGAGAA+GGG | + | tig0019970:5857-5876 | Msa1377680:CDS | 45.0% | |
| AAACAGAACGAGAGAAGGGA+GGG | + | tig0019970:5861-5880 | Msa1377680:CDS | 45.0% | |
| GAAGAAGGAAAAGAAGCCGA+TGG | + | tig0019970:5890-5909 | Msa1377680:CDS | 45.0% | |
| TGGGTAACCAAGAGGAAGAA+GGG | + | tig0019970:5936-5955 | Msa1377680:CDS | 45.0% | |
| CCAATTTCCCTTCTTCCTCT+TGG | - | tig0019970:5946-5965 | None:intergenic | 45.0% | |
| CCAAGAGGAAGAAGGGAAAT+TGG | + | tig0019970:5943-5962 | Msa1377680:CDS | 45.0% | |
| ! | GTGGTGACCAGAGTACTAAT+AGG | + | tig0019970:6776-6795 | Msa1377680:intron | 45.0% |
| !! | ATGCTGCTGCTTTAGTTCAC+TGG | + | tig0019970:6918-6937 | Msa1377680:intron | 45.0% |
| !! | ATCCTTGACACGCTCTAGAA+AGG | - | tig0019970:7031-7050 | None:intergenic | 45.0% |
| ! | TCCTCCCAATAGCCTTAACA+AGG | + | tig0019970:7092-7111 | Msa1377680:CDS | 45.0% |
| TCCTTGTTAAGGCTATTGGG+AGG | - | tig0019970:7096-7115 | None:intergenic | 45.0% | |
| CTTGCAAAGGTGAAAAGCTC+AGG | + | tig0019970:7264-7283 | Msa1377680:intron | 45.0% | |
| AGAGGGGATTAGAAGAGATG+AGG | - | tig0019970:7608-7627 | None:intergenic | 45.0% | |
| GATGAGCTTAGTTCCACTAC+AGG | + | tig0019970:7682-7701 | Msa1377680:intron | 45.0% | |
| CCTTGAGGCTATTCCATTTG+TGG | - | tig0019970:8777-8796 | None:intergenic | 45.0% | |
| CCACAAATGGAATAGCCTCA+AGG | + | tig0019970:8774-8793 | Msa1377680:CDS | 45.0% | |
| ACCATATCCATCAACCCTTG+AGG | - | tig0019970:8792-8811 | None:intergenic | 45.0% | |
| ! | AACATGGTTTGTAACTGGCC+TGG | + | tig0019970:8843-8862 | Msa1377680:intron | 45.0% |
| ! | ACATGGTTTGTAACTGGCCT+GGG | + | tig0019970:8844-8863 | Msa1377680:intron | 45.0% |
| GAGGCTGCACAATATCTTAG+AGG | - | tig0019970:9299-9318 | None:intergenic | 45.0% | |
| TCACATGAATAGGGGATGGA+AGG | + | tig0019970:9575-9594 | Msa1377680:intron | 45.0% | |
| ACTGCTGCATCTTATGCAAG+AGG | + | tig0019970:9620-9639 | Msa1377680:intron | 45.0% | |
| ATCGTATACTGCAGGCAAGA+AGG | + | tig0019970:10139-10158 | Msa1377680:CDS | 45.0% | |
| CAGGCAAGAAGGTTTCTACA+GGG | + | tig0019970:10150-10169 | Msa1377680:CDS | 45.0% | |
| CTACAGGGTTATGGTTGTGA+CGG | + | tig0019970:10165-10184 | Msa1377680:CDS | 45.0% | |
| ! | TTTTGTAGTAACCTGCTGGC+AGG | + | tig0019970:10212-10231 | Msa1377680:CDS | 45.0% |
| !! | TATAAAACAATATATAAATT+AGG | - | tig0019970:7866-7885 | None:intergenic | 5.0% |
| GGGAGAAACAGAACGAGAGA+AGG | + | tig0019970:5856-5875 | Msa1377680:CDS | 50.0% | |
| GAAACAGAACGAGAGAAGGG+AGG | + | tig0019970:5860-5879 | Msa1377680:CDS | 50.0% | |
| GGAAACAGTGGGTAACCAAG+AGG | + | tig0019970:5928-5947 | Msa1377680:CDS | 50.0% | |
| GTGGGTAACCAAGAGGAAGA+AGG | + | tig0019970:5935-5954 | Msa1377680:CDS | 50.0% | |
| TTGGTACTGTTCTGTGCAGC+TGG | + | tig0019970:6729-6748 | Msa1377680:intron | 50.0% | |
| TGGTACTGTTCTGTGCAGCT+GGG | + | tig0019970:6730-6749 | Msa1377680:intron | 50.0% | |
| !! | CTGCTGCTTTAGTTCACTGG+CGG | + | tig0019970:6921-6940 | Msa1377680:intron | 50.0% |
| !! | ACACGCTCTAGAAAGGCCAT+AGG | - | tig0019970:7024-7043 | None:intergenic | 50.0% |
| ATGTGTCAACCTCTCTGCAC+AGG | + | tig0019970:7184-7203 | Msa1377680:intron | 50.0% | |
| TCTGCACAGGCCAAAGTTGA+AGG | + | tig0019970:7197-7216 | Msa1377680:intron | 50.0% | |
| ACAAGCACAACAGCAGAGGT+TGG | + | tig0019970:7719-7738 | Msa1377680:intron | 50.0% | |
| CAACAGCAGAGGTTGGACAA+AGG | + | tig0019970:7726-7745 | Msa1377680:intron | 50.0% | |
| TTGGCCTGATACGGCTGATA+CGG | + | tig0019970:7918-7937 | Msa1377680:intron | 50.0% | |
| GGATTTGGCCATAGATTCGG+AGG | + | tig0019970:8443-8462 | Msa1377680:intron | 50.0% | |
| GATGCTTCCCTACTTCAGCA+TGG | + | tig0019970:8639-8658 | Msa1377680:intron | 50.0% | |
| GGAATAGCCTCAAGGGTTGA+TGG | + | tig0019970:8782-8801 | Msa1377680:CDS | 50.0% | |
| !! | GCCTCAAGGGTTGATGGATA+TGG | + | tig0019970:8788-8807 | Msa1377680:CDS | 50.0% |
| !! | GCAAGAGGTACTAGCAGCAA+TGG | + | tig0019970:9635-9654 | Msa1377680:intron | 50.0% |
| GGGGACATTACCAAATCCAC+AGG | - | tig0019970:10109-10128 | None:intergenic | 50.0% | |
| GCAGGCAAGAAGGTTTCTAC+AGG | + | tig0019970:10149-10168 | Msa1377680:CDS | 50.0% | |
| CAACAACAGTGTGGAGAGCT+AGG | + | tig0019970:10250-10269 | Msa1377680:CDS | 50.0% | |
| ! | AGGGAAAGTGACGGGGAGAA+AGG | + | tig0019970:5822-5841 | Msa1377680:CDS | 55.0% |
| ! | GGGAAAGTGACGGGGAGAAA+GGG | + | tig0019970:5823-5842 | Msa1377680:CDS | 55.0% |
| CGGGGAGAAAGGGAAAGTGA+CGG | + | tig0019970:5833-5852 | Msa1377680:CDS | 55.0% | |
| GGGGAGAAAGGGAAAGTGAC+GGG | + | tig0019970:5834-5853 | Msa1377680:CDS | 55.0% | |
| GGGAGAAAGGGAAAGTGACG+GGG | + | tig0019970:5835-5854 | Msa1377680:CDS | 55.0% | |
| GGAGAAAGGGAAAGTGACGG+GGG | + | tig0019970:5836-5855 | Msa1377680:CDS | 55.0% | |
| AAGGGAGGGAGAGGAGAAGA+AGG | + | tig0019970:5875-5894 | Msa1377680:CDS | 55.0% | |
| ! | TGTGCAGCTGGGTATTGTGC+TGG | + | tig0019970:6741-6760 | Msa1377680:intron | 55.0% |
| ! | GTGCAGCTGGGTATTGTGCT+GGG | + | tig0019970:6742-6761 | Msa1377680:intron | 55.0% |
| ! | GCTGGGTATTGTGCTGGGAA+AGG | + | tig0019970:6747-6766 | Msa1377680:intron | 55.0% |
| GTGCTGGGAAAGGCTAAGAG+TGG | + | tig0019970:6757-6776 | Msa1377680:CDS | 55.0% | |
| !! | GGCCTTTCTAGAGCGTGTCA+AGG | + | tig0019970:7026-7045 | Msa1377680:CDS | 55.0% |
| CAACTTTGGCCTGTGCAGAG+AGG | - | tig0019970:7196-7215 | None:intergenic | 55.0% | |
| GAGCACAAGCACAACAGCAG+AGG | + | tig0019970:7715-7734 | Msa1377680:intron | 55.0% | |
| CAGTCCGTATCAGCCGTATC+AGG | - | tig0019970:7925-7944 | None:intergenic | 55.0% | |
| CTGATACGGCTGATACGGAC+TGG | + | tig0019970:7923-7942 | Msa1377680:intron | 55.0% | |
| TAGTAACCTGCTGGCAGGAC+AGG | + | tig0019970:10217-10236 | Msa1377680:CDS | 55.0% | |
| GAACGAGAGAAGGGAGGGAG+AGG | + | tig0019970:5866-5885 | Msa1377680:CDS | 60.0% | |
| CAAAGACCTGTCCTGCCAGC+AGG | - | tig0019970:10226-10245 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019970 | gene | 5742 | 10278 | 5742 | ID=Msa1377680;Name=Msa1377680 |
| tig0019970 | mRNA | 5742 | 10278 | 5742 | ID=Msa1377680-mRNA-1;Parent=Msa1377680;Name=Msa1377680-mRNA-1;_AED=0.41;_eAED=0.42;_QI=0|0|0|0.5|0.85|0.75|8|0|259 |
| tig0019970 | exon | 5742 | 5749 | 5742 | ID=Msa1377680-mRNA-1:exon:5766;Parent=Msa1377680-mRNA-1 |
| tig0019970 | exon | 5818 | 5980 | 5818 | ID=Msa1377680-mRNA-1:exon:5767;Parent=Msa1377680-mRNA-1 |
| tig0019970 | exon | 6423 | 6488 | 6423 | ID=Msa1377680-mRNA-1:exon:5768;Parent=Msa1377680-mRNA-1 |
| tig0019970 | exon | 6748 | 6787 | 6748 | ID=Msa1377680-mRNA-1:exon:5769;Parent=Msa1377680-mRNA-1 |
| tig0019970 | exon | 6980 | 7121 | 6980 | ID=Msa1377680-mRNA-1:exon:5770;Parent=Msa1377680-mRNA-1 |
| tig0019970 | exon | 7206 | 7272 | 7206 | ID=Msa1377680-mRNA-1:exon:5771;Parent=Msa1377680-mRNA-1 |
| tig0019970 | exon | 8770 | 8852 | 8770 | ID=Msa1377680-mRNA-1:exon:5772;Parent=Msa1377680-mRNA-1 |
| tig0019970 | exon | 10068 | 10278 | 10068 | ID=Msa1377680-mRNA-1:exon:5773;Parent=Msa1377680-mRNA-1 |
| tig0019970 | CDS | 5742 | 5749 | 5742 | ID=Msa1377680-mRNA-1:cds;Parent=Msa1377680-mRNA-1 |
| tig0019970 | CDS | 5818 | 5980 | 5818 | ID=Msa1377680-mRNA-1:cds;Parent=Msa1377680-mRNA-1 |
| tig0019970 | CDS | 6423 | 6488 | 6423 | ID=Msa1377680-mRNA-1:cds;Parent=Msa1377680-mRNA-1 |
| tig0019970 | CDS | 6748 | 6787 | 6748 | ID=Msa1377680-mRNA-1:cds;Parent=Msa1377680-mRNA-1 |
| tig0019970 | CDS | 6980 | 7121 | 6980 | ID=Msa1377680-mRNA-1:cds;Parent=Msa1377680-mRNA-1 |
| tig0019970 | CDS | 7206 | 7272 | 7206 | ID=Msa1377680-mRNA-1:cds;Parent=Msa1377680-mRNA-1 |
| tig0019970 | CDS | 8770 | 8852 | 8770 | ID=Msa1377680-mRNA-1:cds;Parent=Msa1377680-mRNA-1 |
| tig0019970 | CDS | 10068 | 10278 | 10068 | ID=Msa1377680-mRNA-1:cds;Parent=Msa1377680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
