Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797690 | sp|Q9SZG0|HHP4_ARATH | 76.501 | 383 | 65 | 2 | 22 | 403 | 27 | 385 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797690 | G7K2G4 | 93.797 | 403 | 1 | 1 | 1 | 403 | 1 | 379 | 0.0 | 766 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027280 | Msa0797690 | -0.814005 | 1.920180e-51 | -8.615850e-47 |
| Msa0609650 | Msa0797690 | -0.803381 | 3.581847e-49 | -8.615850e-47 |
| Msa0797690 | Msa1364410 | -0.815434 | 9.261732e-52 | -8.615850e-47 |
| Msa0149350 | Msa0797690 | -0.800709 | 1.269121e-48 | -8.615850e-47 |
| Msa0422050 | Msa0797690 | -0.801670 | 8.071194e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797690 | MtrunA17_Chr5g0401021 | 93.797 | 403 | 1 | 1 | 1 | 403 | 1 | 379 | 0.0 | 766 |
| Msa0797690 | MtrunA17_Chr3g0134921 | 62.779 | 403 | 135 | 5 | 1 | 403 | 9 | 396 | 2.17e-177 | 499 |
| Msa0797690 | MtrunA17_Chr4g0064481 | 43.122 | 378 | 157 | 6 | 28 | 403 | 41 | 362 | 3.66e-95 | 289 |
| Msa0797690 | MtrunA17_Chr2g0305481 | 53.093 | 194 | 91 | 0 | 205 | 398 | 136 | 329 | 2.10e-64 | 209 |
| Msa0797690 | MtrunA17_Chr2g0305481 | 58.333 | 60 | 25 | 0 | 28 | 87 | 7 | 66 | 1.10e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797690 | AT4G37680.3 | 76.501 | 383 | 65 | 2 | 22 | 403 | 32 | 390 | 0.0 | 602 |
| Msa0797690 | AT4G37680.4 | 76.501 | 383 | 65 | 2 | 22 | 403 | 32 | 390 | 0.0 | 602 |
| Msa0797690 | AT4G37680.1 | 76.501 | 383 | 65 | 2 | 22 | 403 | 27 | 385 | 0.0 | 601 |
| Msa0797690 | AT4G37680.5 | 76.501 | 383 | 65 | 2 | 22 | 403 | 27 | 385 | 0.0 | 601 |
| Msa0797690 | AT4G37680.2 | 76.501 | 383 | 65 | 2 | 22 | 403 | 27 | 385 | 0.0 | 601 |
| Msa0797690 | AT4G38320.1 | 75.538 | 372 | 66 | 2 | 22 | 392 | 27 | 374 | 0.0 | 571 |
| Msa0797690 | AT4G30850.2 | 38.144 | 388 | 193 | 8 | 13 | 398 | 8 | 350 | 4.07e-76 | 240 |
| Msa0797690 | AT4G30850.1 | 38.144 | 388 | 193 | 8 | 13 | 398 | 8 | 350 | 4.07e-76 | 240 |
| Msa0797690 | AT5G20270.1 | 51.256 | 199 | 97 | 0 | 205 | 403 | 134 | 332 | 1.82e-66 | 214 |
| Msa0797690 | AT5G20270.1 | 41.758 | 91 | 50 | 1 | 2 | 92 | 27 | 114 | 1.05e-19 | 89.7 |
| Msa0797690 | AT2G24150.2 | 50.811 | 185 | 91 | 0 | 203 | 387 | 52 | 236 | 5.83e-59 | 192 |
| Msa0797690 | AT2G24150.1 | 51.366 | 183 | 89 | 0 | 205 | 387 | 143 | 325 | 1.62e-58 | 194 |
| Msa0797690 | AT2G24150.1 | 44.444 | 72 | 40 | 0 | 29 | 100 | 29 | 100 | 1.20e-16 | 80.9 |
| Msa0797690 | AT2G40710.1 | 79.570 | 93 | 19 | 0 | 311 | 403 | 1 | 93 | 2.31e-48 | 159 |
| Msa0797690 | AT4G38290.1 | 84.932 | 73 | 11 | 0 | 331 | 403 | 36 | 108 | 1.78e-38 | 134 |
Find 116 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAATTTCATTTCGGATTT+CGG | 0.191895 | 5_3:+9930887 | None:intergenic |
| AGATTATTTGAGAGAGAAAA+TGG | 0.197795 | 5_3:-9930627 | Msa0797690:exon |
| TCGACACAGCTTAGGATAAT+TGG | 0.198500 | 5_3:-9927298 | Msa0797690:three_prime_UTR |
| CAATTCAAACGATGATTTAT+TGG | 0.217064 | 5_3:-9930597 | Msa0797690:CDS |
| GCACGGGTGGTGCGATATTC+TGG | 0.230558 | 5_3:+9927855 | None:intergenic |
| TCTCAGGTGGCGTGATCTTC+GGG | 0.233042 | 5_3:-9927565 | Msa0797690:CDS |
| ATTCTTATGGGTGCTTTATA+TGG | 0.238571 | 5_3:-9927729 | Msa0797690:CDS |
| ATGGGTGCTTTATATGGAAT+TGG | 0.250476 | 5_3:-9927723 | Msa0797690:CDS |
| AACTGGTTTGGAGATTCTTA+TGG | 0.257306 | 5_3:-9927742 | Msa0797690:CDS |
| GATTGGGTTCTTCCTGTTCC+TGG | 0.260785 | 5_3:-9928959 | Msa0797690:CDS |
| AGAGATAATGAATACATTCT+TGG | 0.276748 | 5_3:-9930476 | Msa0797690:CDS |
| TGTTTATGTAACCATATTAT+AGG | 0.278410 | 5_3:-9927427 | Msa0797690:three_prime_UTR |
| ATCTCAGGTGGCGTGATCTT+CGG | 0.281739 | 5_3:-9927566 | Msa0797690:CDS |
| TCCCGGAGTCTTTGCAAATC+AGG | 0.308226 | 5_3:+9928802 | None:intergenic |
| CCACCAATTGTTTCATGTAT+TGG | 0.321350 | 5_3:-9927631 | Msa0797690:CDS |
| GTGAGCAATAAAATTTCATT+TGG | 0.323343 | 5_3:-9927362 | Msa0797690:three_prime_UTR |
| AATTCAAACGATGATTTATT+GGG | 0.328322 | 5_3:-9930596 | Msa0797690:CDS |
| ATTATCTATCAATTTCATTT+CGG | 0.329847 | 5_3:+9930880 | None:intergenic |
| TATACATAATGCCTATAATA+TGG | 0.343955 | 5_3:+9927416 | None:intergenic |
| TGGGTGCTTTATATGGAATT+GGG | 0.347072 | 5_3:-9927722 | Msa0797690:CDS |
| TTGCTACTGGAAAATCTTCC+AGG | 0.355578 | 5_3:+9928760 | None:intergenic |
| AACTTTCATGGCGGTGTATA+TGG | 0.357714 | 5_3:+9928930 | None:intergenic |
| AAGGGAAAGGGAAAAGGTTA+TGG | 0.357748 | 5_3:-9930550 | Msa0797690:CDS |
| CTAAGCAAAACCTGCTTCAT+AGG | 0.363204 | 5_3:+9930434 | None:intergenic |
| TTCCCAGGCATCCATCGTTC+TGG | 0.363942 | 5_3:+9927675 | None:intergenic |
| ACTGGTTTGGAGATTCTTAT+GGG | 0.366898 | 5_3:-9927741 | Msa0797690:CDS |
| CGCTGCATGAGTTATCTATC+TGG | 0.372807 | 5_3:+9927265 | None:intergenic |
| TCATACTGATGTATGTGTTT+TGG | 0.391387 | 5_3:-9928737 | Msa0797690:CDS |
| ACAATGAAACTCTCAATGTT+TGG | 0.398323 | 5_3:-9930397 | Msa0797690:CDS |
| TCACAAATTGCATCAGTTAG+AGG | 0.398421 | 5_3:+9927468 | None:intergenic |
| CCTGGGAAATTTGACATTGC+TGG | 0.403078 | 5_3:-9927660 | Msa0797690:CDS |
| CACATAAATGAATAATATAC+TGG | 0.417103 | 5_3:+9927969 | None:intergenic |
| TGTTGATTTATTGAGATGAT+TGG | 0.422267 | 5_3:-9927540 | Msa0797690:exon |
| ATTCCAGAACGATGGATGCC+TGG | 0.423665 | 5_3:-9927678 | Msa0797690:CDS |
| TACAGCCTGTGGAACTTTCA+TGG | 0.426741 | 5_3:+9928918 | None:intergenic |
| GGAATGGGTTTGTCCGGTGC+AGG | 0.435598 | 5_3:-9927819 | Msa0797690:CDS |
| TCAGCATTCTTGAGGAAGTC+AGG | 0.446846 | 5_3:+9928871 | None:intergenic |
| CTTCTGTATAATTGTTTGCC+TGG | 0.446983 | 5_3:-9928778 | Msa0797690:CDS |
| CAACCAATACATGAAACAAT+TGG | 0.453103 | 5_3:+9927628 | None:intergenic |
| GTAACAAAGAACGATGATAT+AGG | 0.458455 | 5_3:-9930856 | Msa0797690:five_prime_UTR |
| ATGCAGGGTTAGTTTATCTC+AGG | 0.468954 | 5_3:-9927581 | Msa0797690:CDS |
| TTTATATGGAATTGGGGCAC+TGG | 0.470480 | 5_3:-9927715 | Msa0797690:CDS |
| TACATCAGTATGATTGCTAC+TGG | 0.471174 | 5_3:+9928747 | None:intergenic |
| TCACTTACGCATGGAAATTG+AGG | 0.472647 | 5_3:+9927381 | None:intergenic |
| AAGAATGTTGTGAAAGAGAA+GGG | 0.475515 | 5_3:-9930568 | Msa0797690:CDS |
| ATGCTCAGGCTTGACTATGC+TGG | 0.476533 | 5_3:-9928026 | Msa0797690:CDS |
| ATATGGTCAATGCCAGGAAC+AGG | 0.476666 | 5_3:+9928947 | None:intergenic |
| ATCTGAATGGCCTATGAAGC+AGG | 0.477735 | 5_3:-9930444 | Msa0797690:CDS |
| CATCCATCGTTCTGGAATCC+TGG | 0.478324 | 5_3:+9927683 | None:intergenic |
| AACAATTATACAGAAGTTCC+CGG | 0.480924 | 5_3:+9928785 | None:intergenic |
| CCCCTTCGTGGTTCGAGGAG+TGG | 0.482000 | 5_3:-9928673 | Msa0797690:CDS |
| AAAGAGAAGGGAAAGGGAAA+AGG | 0.484266 | 5_3:-9930556 | Msa0797690:CDS |
| ATTGACATTCGACACAGCTT+AGG | 0.488750 | 5_3:-9927306 | Msa0797690:three_prime_UTR |
| TTTCATGTATTGGTTGTAGC+TGG | 0.491008 | 5_3:-9927621 | Msa0797690:CDS |
| TGCGCAGCATAATGTAAAAG+AGG | 0.493131 | 5_3:-9928195 | Msa0797690:intron |
| GAAGAATGTTGTGAAAGAGA+AGG | 0.508346 | 5_3:-9930569 | Msa0797690:CDS |
| GCCACTCCTCGAACCACGAA+GGG | 0.509862 | 5_3:+9928672 | None:intergenic |
| GCCTGATTTGCAAAGACTCC+GGG | 0.513495 | 5_3:-9928803 | Msa0797690:CDS |
| CTGAGTGGCACGAGAGGAGA+TGG | 0.516573 | 5_3:+9928066 | None:intergenic |
| GATTATTTGAGAGAGAAAAT+GGG | 0.516809 | 5_3:-9930626 | Msa0797690:exon |
| TTCCAGAACGATGGATGCCT+GGG | 0.520497 | 5_3:-9927677 | Msa0797690:CDS |
| TCATTATCTCTAAGAAAAGC+TGG | 0.521999 | 5_3:+9930488 | None:intergenic |
| TGCCTGATTTGCAAAGACTC+CGG | 0.525387 | 5_3:-9928804 | Msa0797690:CDS |
| TTGGTCATTATCGATCTGAA+TGG | 0.538153 | 5_3:-9930457 | Msa0797690:CDS |
| ACTGGGCATTGCCACCATGT+TGG | 0.539080 | 5_3:-9927904 | Msa0797690:CDS |
| GCTCCGATTGTAGCTTGTGC+AGG | 0.540478 | 5_3:+9928848 | None:intergenic |
| TGTTGTGAAAGAGAAGGGAA+AGG | 0.540500 | 5_3:-9930563 | Msa0797690:CDS |
| GCATACACTCATTATCATGC+AGG | 0.540803 | 5_3:-9927597 | Msa0797690:CDS |
| TAGTAATAAAACCCAAGTAA+AGG | 0.543222 | 5_3:+9927928 | None:intergenic |
| TGACCTGCACAAGCTACAAT+CGG | 0.544753 | 5_3:-9928851 | Msa0797690:CDS |
| AGGGAAAAGGTTATGGAAGA+AGG | 0.546052 | 5_3:-9930543 | Msa0797690:CDS |
| CTTTGCAAATCAGGCATGGA+AGG | 0.547328 | 5_3:+9928811 | None:intergenic |
| GCAATTTGTGATTATTGAAG+AGG | 0.550964 | 5_3:-9927456 | Msa0797690:three_prime_UTR |
| TCTGTTCTGGGGTGAACCTG+AGG | 0.551402 | 5_3:-9927775 | Msa0797690:CDS |
| GGGCACTGGTTTATGCCACC+AGG | 0.551446 | 5_3:-9927701 | Msa0797690:CDS |
| GGGTGCTTTATATGGAATTG+GGG | 0.552742 | 5_3:-9927721 | Msa0797690:CDS |
| GTTGTGAAAGAGAAGGGAAA+GGG | 0.552744 | 5_3:-9930562 | Msa0797690:CDS |
| ATTTGTGATTATTGAAGAGG+AGG | 0.554015 | 5_3:-9927453 | Msa0797690:three_prime_UTR |
| CAGGGTTAGTTTATCTCAGG+TGG | 0.554996 | 5_3:-9927578 | Msa0797690:CDS |
| GGCGAACATAATAGCACCGC+TGG | 0.556725 | 5_3:-9928168 | Msa0797690:CDS |
| CGGTGTATATGGTCAATGCC+AGG | 0.557434 | 5_3:+9928941 | None:intergenic |
| CCAATACATGAAACAATTGG+TGG | 0.566505 | 5_3:+9927631 | None:intergenic |
| TTTGTGATTATTGAAGAGGA+GGG | 0.566581 | 5_3:-9927452 | Msa0797690:three_prime_UTR |
| GCGTATCATACATTATGCTC+AGG | 0.569788 | 5_3:-9928040 | Msa0797690:CDS |
| TGTGCAGGTCAGCATTCTTG+AGG | 0.571278 | 5_3:+9928863 | None:intergenic |
| AAACATTGAGAGTTTCATTG+TGG | 0.572608 | 5_3:+9930399 | None:intergenic |
| CGCGCTCTGAGTGGCACGAG+AGG | 0.578702 | 5_3:+9928060 | None:intergenic |
| GCTTGACTATGCTGGAATTG+CGG | 0.581989 | 5_3:-9928018 | Msa0797690:CDS |
| CCAGTTGTGTAAAACACCTC+AGG | 0.583373 | 5_3:+9927759 | None:intergenic |
| CACCGCCATGAAAGTTCCAC+AGG | 0.583689 | 5_3:-9928923 | Msa0797690:CDS |
| TGCCACTCCTCGAACCACGA+AGG | 0.585025 | 5_3:+9928671 | None:intergenic |
| CCAGCAATGTCAAATTTCCC+AGG | 0.589056 | 5_3:+9927660 | None:intergenic |
| GAGTCTTTGCAAATCAGGCA+TGG | 0.597027 | 5_3:+9928807 | None:intergenic |
| GCGGTGCTATTATGTTCGCC+AGG | 0.599081 | 5_3:+9928171 | None:intergenic |
| GCTAGCTAGCAAGCAAAACA+TGG | 0.600478 | 5_3:+9928097 | None:intergenic |
| AAATTTCATTTGGACTACTG+TGG | 0.604398 | 5_3:-9927352 | Msa0797690:three_prime_UTR |
| GCATAATGTAAAAGAGGACC+TGG | 0.610452 | 5_3:-9928189 | Msa0797690:CDS |
| GTGCAGAATAGGTCCTGCAC+CGG | 0.611104 | 5_3:+9927806 | None:intergenic |
| CTCAGGTGGCGTGATCTTCG+GGG | 0.633214 | 5_3:-9927564 | Msa0797690:CDS |
| CCACCAGGATTCCAGAACGA+TGG | 0.641469 | 5_3:-9927686 | Msa0797690:CDS |
| TGGTGATTAGACCAATTACA+AGG | 0.647972 | 5_3:-9928148 | Msa0797690:CDS |
| TTGAGGAAGTCAGGCAAATG+CGG | 0.658409 | 5_3:+9928880 | None:intergenic |
| CATACACTCATTATCATGCA+GGG | 0.658803 | 5_3:-9927596 | Msa0797690:CDS |
| CAGATAGATAACTCATGCAG+CGG | 0.661597 | 5_3:-9927264 | None:intergenic |
| TGGTAGGAGCGAAACCAACA+TGG | 0.662712 | 5_3:+9927890 | None:intergenic |
| ACAAAGAACGATGATATAGG+TGG | 0.674137 | 5_3:-9930853 | Msa0797690:five_prime_UTR |
| CCACTCCTCGAACCACGAAG+GGG | 0.675908 | 5_3:+9928673 | None:intergenic |
| GAACTAAGATCTACAGCCTG+TGG | 0.681389 | 5_3:+9928907 | None:intergenic |
| CCATCGTTCTGGAATCCTGG+TGG | 0.683677 | 5_3:+9927686 | None:intergenic |
| TGGTTCGAGGAGTGGCAGTG+AGG | 0.684898 | 5_3:-9928665 | Msa0797690:intron |
| ATAAATGAATAATATACTGG+AGG | 0.685225 | 5_3:+9927972 | None:intergenic |
| TGTATGATACGCGCTCTGAG+TGG | 0.685438 | 5_3:+9928051 | None:intergenic |
| GTAATTGGTCTAATCACCAG+CGG | 0.696221 | 5_3:+9928152 | None:intergenic |
| TAGGAGCGAAACCAACATGG+TGG | 0.750691 | 5_3:+9927893 | None:intergenic |
| TGATTAGACCAATTACAAGG+TGG | 0.761263 | 5_3:-9928145 | Msa0797690:CDS |
| AGCCTGTGGAACTTTCATGG+CGG | 0.765262 | 5_3:+9928921 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAATTGAATTAATTAG+AGG | + | chr5_3:9927523-9927542 | None:intergenic | 10.0% |
| !!! | TTTTATTTCAAATAAATACA+AGG | + | chr5_3:9928866-9928885 | None:intergenic | 10.0% |
| !! | ATTATCTATCAATTTCATTT+CGG | + | chr5_3:9927305-9927324 | None:intergenic | 15.0% |
| !! | ATTAAATTCAATAGCAAAAA+AGG | + | chr5_3:9927840-9927859 | None:intergenic | 15.0% |
| !!! | ATAAACTTTTGAATAATTCA+AGG | - | chr5_3:9928208-9928227 | Msa0797690:intron | 15.0% |
| !! | ATATGAAGTAAAAATCTTAA+GGG | + | chr5_3:9929085-9929104 | None:intergenic | 15.0% |
| !! | AATATGAAGTAAAAATCTTA+AGG | + | chr5_3:9929086-9929105 | None:intergenic | 15.0% |
| !! | TATTCTAGATAACTTAAAAA+AGG | + | chr5_3:9929624-9929643 | None:intergenic | 15.0% |
| !! | AATTCAAACGATGATTTATT+GGG | - | chr5_3:9927586-9927605 | Msa0797690:CDS | 20.0% |
| !! | ATATGGTAAATGTTATCTAA+CGG | + | chr5_3:9928491-9928510 | None:intergenic | 20.0% |
| !! | GACAAAATAGAAAATAGAAA+AGG | + | chr5_3:9929013-9929032 | None:intergenic | 20.0% |
| !! | AACAAATTAAGTGTTAAACT+TGG | - | chr5_3:9929736-9929755 | Msa0797690:intron | 20.0% |
| !! | GAAAGAAAAAGAAAAAACAA+AGG | + | chr5_3:9929830-9929849 | None:intergenic | 20.0% |
| !! | ATAAATGAATAATATACTGG+AGG | + | chr5_3:9930213-9930232 | None:intergenic | 20.0% |
| !! | CACATAAATGAATAATATAC+TGG | + | chr5_3:9930216-9930235 | None:intergenic | 20.0% |
| !! | TGTTTATGTAACCATATTAT+AGG | - | chr5_3:9930755-9930774 | Msa0797690:five_prime_UTR | 20.0% |
| !! | TATACATAATGCCTATAATA+TGG | + | chr5_3:9930769-9930788 | None:intergenic | 20.0% |
| ! | ATCAATTTCATTTCGGATTT+CGG | + | chr5_3:9927298-9927317 | None:intergenic | 25.0% |
| ! | GAATGAATGAATGAATGAAA+GGG | + | chr5_3:9927473-9927492 | None:intergenic | 25.0% |
| ! | TGAATGAATGAATGAATGAA+AGG | + | chr5_3:9927474-9927493 | None:intergenic | 25.0% |
| ! | AGATTATTTGAGAGAGAAAA+TGG | - | chr5_3:9927555-9927574 | Msa0797690:exon | 25.0% |
| ! | GATTATTTGAGAGAGAAAAT+GGG | - | chr5_3:9927556-9927575 | Msa0797690:exon | 25.0% |
| ! | CAATTCAAACGATGATTTAT+TGG | - | chr5_3:9927585-9927604 | Msa0797690:CDS | 25.0% |
| ! | AGAGATAATGAATACATTCT+TGG | - | chr5_3:9927706-9927725 | Msa0797690:CDS | 25.0% |
| ! | AAATATTTGTAGCCTTTACT+AGG | - | chr5_3:9927884-9927903 | Msa0797690:CDS | 25.0% |
| ! | AATATTTGTAGCCTTTACTA+GGG | - | chr5_3:9927885-9927904 | Msa0797690:CDS | 25.0% |
| !! | AACTTTGTTGTGTTACATAT+GGG | - | chr5_3:9928012-9928031 | Msa0797690:CDS | 25.0% |
| ! | GACATAGCAAAATTATAAGT+TGG | - | chr5_3:9928175-9928194 | Msa0797690:CDS | 25.0% |
| ! | ATCAAATGAGAAAAGAATAG+TGG | - | chr5_3:9928243-9928262 | Msa0797690:intron | 25.0% |
| ! | TGATTCATTAGAATGAATCA+TGG | - | chr5_3:9928322-9928341 | Msa0797690:intron | 25.0% |
| ! | ATATCCAAAATAGATAAACC+AGG | - | chr5_3:9928409-9928428 | Msa0797690:intron | 25.0% |
| ! | TCTGATACTTAAAACAAGAA+AGG | + | chr5_3:9928729-9928748 | None:intergenic | 25.0% |
| !! | GTTATTGATGGTTTGTAAAT+TGG | + | chr5_3:9928833-9928852 | None:intergenic | 25.0% |
| ! | TGTTCAAAAATGAAATTGGA+AGG | + | chr5_3:9928945-9928964 | None:intergenic | 25.0% |
| !!! | TTCCAATTTCATTTTTGAAC+AGG | - | chr5_3:9928944-9928963 | Msa0797690:CDS | 25.0% |
| !!! | TCCAATTTCATTTTTGAACA+GGG | - | chr5_3:9928945-9928964 | Msa0797690:CDS | 25.0% |
| !!! | TGTTATTTTCGTAGAGTTTT+AGG | + | chr5_3:9928974-9928993 | None:intergenic | 25.0% |
| ! | TATGATTGAGTACAAGAATT+AGG | + | chr5_3:9929172-9929191 | None:intergenic | 25.0% |
| ! | TTAAGTGTTAAACTTGGTAA+AGG | - | chr5_3:9929742-9929761 | Msa0797690:intron | 25.0% |
| ! | AACTTGGTAAAGGAAAAATA+CGG | - | chr5_3:9929752-9929771 | Msa0797690:intron | 25.0% |
| !! | TTCATGATTGACTAGATTTT+TGG | - | chr5_3:9929929-9929948 | Msa0797690:intron | 25.0% |
| ! | TAGTAATAAAACCCAAGTAA+AGG | + | chr5_3:9930257-9930276 | None:intergenic | 25.0% |
| !!! | TTGGGTTTTATTACTATACT+GGG | - | chr5_3:9930261-9930280 | Msa0797690:intron | 25.0% |
| !!! | TGTTGATTTATTGAGATGAT+TGG | - | chr5_3:9930642-9930661 | Msa0797690:intron | 25.0% |
| ! | GTGAGCAATAAAATTTCATT+TGG | - | chr5_3:9930820-9930839 | Msa0797690:five_prime_UTR | 25.0% |
| GTAACAAAGAACGATGATAT+AGG | - | chr5_3:9927326-9927345 | Msa0797690:three_prime_UTR | 30.0% | |
| AAGAATGTTGTGAAAGAGAA+GGG | - | chr5_3:9927614-9927633 | Msa0797690:CDS | 30.0% | |
| ! | TCATTATCTCTAAGAAAAGC+TGG | + | chr5_3:9927697-9927716 | None:intergenic | 30.0% |
| AAACATTGAGAGTTTCATTG+TGG | + | chr5_3:9927786-9927805 | None:intergenic | 30.0% | |
| ACAATGAAACTCTCAATGTT+TGG | - | chr5_3:9927785-9927804 | Msa0797690:CDS | 30.0% | |
| TATCAAAACAACCCTAGTAA+AGG | + | chr5_3:9927899-9927918 | None:intergenic | 30.0% | |
| !!! | TGTTTTGATAATCCAGAGTT+TGG | - | chr5_3:9927909-9927928 | Msa0797690:CDS | 30.0% |
| TACAGGAAGTAAGTAAAGTT+TGG | - | chr5_3:9927936-9927955 | Msa0797690:CDS | 30.0% | |
| ! | CAACTTTGTTGTGTTACATA+TGG | - | chr5_3:9928011-9928030 | Msa0797690:CDS | 30.0% |
| TTGTGAATCAGATCTTATTG+TGG | - | chr5_3:9928102-9928121 | Msa0797690:CDS | 30.0% | |
| ! | TTTTATCAGTAATGCATCCT+AGG | + | chr5_3:9928130-9928149 | None:intergenic | 30.0% |
| TAGGATGCATTACTGATAAA+AGG | - | chr5_3:9928129-9928148 | Msa0797690:CDS | 30.0% | |
| AATGAGAAAAGAATAGTGGT+TGG | - | chr5_3:9928247-9928266 | Msa0797690:intron | 30.0% | |
| ATGAGAAAAGAATAGTGGTT+GGG | - | chr5_3:9928248-9928267 | Msa0797690:intron | 30.0% | |
| TTATGCAAAGTTGACAAAAG+TGG | - | chr5_3:9928276-9928295 | Msa0797690:intron | 30.0% | |
| ! | ATCTCCTGGTTTATCTATTT+TGG | + | chr5_3:9928416-9928435 | None:intergenic | 30.0% |
| TCTAATTGATAAGAATCTCC+TGG | + | chr5_3:9928430-9928449 | None:intergenic | 30.0% | |
| ! | TACCATATTCCATTTTACTC+TGG | - | chr5_3:9928503-9928522 | Msa0797690:intron | 30.0% |
| ! | ACCATATTCCATTTTACTCT+GGG | - | chr5_3:9928504-9928523 | Msa0797690:intron | 30.0% |
| CAAAAATTCCCAGAGTAAAA+TGG | + | chr5_3:9928515-9928534 | None:intergenic | 30.0% | |
| ! | TTGGTAGTATCATTAGAGTA+AGG | - | chr5_3:9928541-9928560 | Msa0797690:intron | 30.0% |
| !! | CTATTTTGAGGGAAATAAAC+TGG | + | chr5_3:9928570-9928589 | None:intergenic | 30.0% |
| CAGTTTATTTCCCTCAAAAT+AGG | - | chr5_3:9928568-9928587 | Msa0797690:intron | 30.0% | |
| TTTATTTCCCTCAAAATAGG+AGG | - | chr5_3:9928571-9928590 | Msa0797690:intron | 30.0% | |
| !!! | CTTTTTTCCTCCTATTTTGA+GGG | + | chr5_3:9928581-9928600 | None:intergenic | 30.0% |
| !!! | ACTTTTTTCCTCCTATTTTG+AGG | + | chr5_3:9928582-9928601 | None:intergenic | 30.0% |
| TATGTATTTGTGACCAATGA+AGG | - | chr5_3:9928775-9928794 | Msa0797690:CDS | 30.0% | |
| ! | ATTGATGGTTTGTAAATTGG+TGG | + | chr5_3:9928830-9928849 | None:intergenic | 30.0% |
| ACCCTGTTCAAAAATGAAAT+TGG | + | chr5_3:9928949-9928968 | None:intergenic | 30.0% | |
| CAGTAATTGAAAGATGGTAA+GGG | + | chr5_3:9929040-9929059 | None:intergenic | 30.0% | |
| ! | AACAAAACAAAAAAGCATGG+TGG | + | chr5_3:9929149-9929168 | None:intergenic | 30.0% |
| AGGAACAAAACAAAAAAGCA+TGG | + | chr5_3:9929152-9929171 | None:intergenic | 30.0% | |
| ! | CGAAAAATGTTATCTTTTGC+AGG | - | chr5_3:9929195-9929214 | Msa0797690:intron | 30.0% |
| AACAATTATACAGAAGTTCC+CGG | + | chr5_3:9929400-9929419 | None:intergenic | 30.0% | |
| ! | TCATACTGATGTATGTGTTT+TGG | - | chr5_3:9929445-9929464 | Msa0797690:intron | 30.0% |
| CTGGAATGCAATAAATGATA+TGG | - | chr5_3:9929697-9929716 | Msa0797690:intron | 30.0% | |
| AAAGGAAAAATACGGAATGA+AGG | - | chr5_3:9929760-9929779 | Msa0797690:intron | 30.0% | |
| AAGGAAAAATACGGAATGAA+GGG | - | chr5_3:9929761-9929780 | Msa0797690:intron | 30.0% | |
| ! | TCAGTTCGTCAATAATTTTC+TGG | - | chr5_3:9929798-9929817 | Msa0797690:intron | 30.0% |
| ! | TGGCCTTTTTATGCATTTTT+AGG | - | chr5_3:9930057-9930076 | Msa0797690:intron | 30.0% |
| CCACCTAAAAATGCATAAAA+AGG | + | chr5_3:9930063-9930082 | None:intergenic | 30.0% | |
| !! | CCTTTTTATGCATTTTTAGG+TGG | - | chr5_3:9930060-9930079 | Msa0797690:intron | 30.0% |
| ATATACTGGAGGATAAAAAG+AGG | + | chr5_3:9930202-9930221 | None:intergenic | 30.0% | |
| AAGTAAAGGTTGCAGAAAAA+TGG | + | chr5_3:9930243-9930262 | None:intergenic | 30.0% | |
| ! | ATTTTTCTGCAACCTTTACT+TGG | - | chr5_3:9930242-9930261 | Msa0797690:intron | 30.0% |
| ! | TTTTTCTGCAACCTTTACTT+GGG | - | chr5_3:9930243-9930262 | Msa0797690:intron | 30.0% |
| !!! | CTTGGGTTTTATTACTATAC+TGG | - | chr5_3:9930260-9930279 | Msa0797690:intron | 30.0% |
| !! | TATTCTGGAGTTTGAAAAAC+TGG | + | chr5_3:9930315-9930334 | None:intergenic | 30.0% |
| ATTCTTATGGGTGCTTTATA+TGG | - | chr5_3:9930453-9930472 | Msa0797690:CDS | 30.0% | |
| CAACCAATACATGAAACAAT+TGG | + | chr5_3:9930557-9930576 | None:intergenic | 30.0% | |
| GCAATTTGTGATTATTGAAG+AGG | - | chr5_3:9930726-9930745 | Msa0797690:intron | 30.0% | |
| ATTTGTGATTATTGAAGAGG+AGG | - | chr5_3:9930729-9930748 | Msa0797690:intron | 30.0% | |
| TTTGTGATTATTGAAGAGGA+GGG | - | chr5_3:9930730-9930749 | Msa0797690:intron | 30.0% | |
| AAATTTCATTTGGACTACTG+TGG | - | chr5_3:9930830-9930849 | Msa0797690:five_prime_UTR | 30.0% | |
| ACAAAGAACGATGATATAGG+TGG | - | chr5_3:9927329-9927348 | Msa0797690:three_prime_UTR | 35.0% | |
| TGAATGAAAGGGAGAAGAAA+AGG | + | chr5_3:9927462-9927481 | None:intergenic | 35.0% | |
| GAAGAATGTTGTGAAAGAGA+AGG | - | chr5_3:9927613-9927632 | Msa0797690:CDS | 35.0% | |
| TTGGTCATTATCGATCTGAA+TGG | - | chr5_3:9927725-9927744 | Msa0797690:CDS | 35.0% | |
| ! | TTGATAATCCAGAGTTTGGT+TGG | - | chr5_3:9927913-9927932 | Msa0797690:CDS | 35.0% |
| CATGAATCGAAGTCTTTACT+GGG | - | chr5_3:9927976-9927995 | Msa0797690:CDS | 35.0% | |
| TGAGAAAAGAATAGTGGTTG+GGG | - | chr5_3:9928249-9928268 | Msa0797690:intron | 35.0% | |
| TGATTCATCATAGTGAATCG+TGG | - | chr5_3:9928350-9928369 | Msa0797690:intron | 35.0% | |
| TCCCAGAGTAAAATGGAATA+TGG | + | chr5_3:9928508-9928527 | None:intergenic | 35.0% | |
| ! | TTCTAGCTACCATATCTGAA+GGG | + | chr5_3:9928653-9928672 | None:intergenic | 35.0% |
| !! | TTTCTAGCTACCATATCTGA+AGG | + | chr5_3:9928654-9928673 | None:intergenic | 35.0% |
| TCACAACACTCCATAGTTTA+GGG | - | chr5_3:9928687-9928706 | Msa0797690:CDS | 35.0% | |
| CATAGAAAGACCCTAAACTA+TGG | + | chr5_3:9928700-9928719 | None:intergenic | 35.0% | |
| TATTTGTGACCAATGAAGGA+AGG | - | chr5_3:9928779-9928798 | Msa0797690:CDS | 35.0% | |
| AAGGAAATTTCCGCAATCAA+AGG | - | chr5_3:9928798-9928817 | Msa0797690:CDS | 35.0% | |
| ATGAAATTGGAAGGTTGAGA+TGG | + | chr5_3:9928936-9928955 | None:intergenic | 35.0% | |
| CCAGTAATTGAAAGATGGTA+AGG | + | chr5_3:9929041-9929060 | None:intergenic | 35.0% | |
| CCTTACCATCTTTCAATTAC+TGG | - | chr5_3:9929038-9929057 | Msa0797690:intron | 35.0% | |
| GAACTCCAGTAATTGAAAGA+TGG | + | chr5_3:9929046-9929065 | None:intergenic | 35.0% | |
| ! | ATCTTTTGCAGGCATTTGAT+TGG | - | chr5_3:9929206-9929225 | Msa0797690:intron | 35.0% |
| ! | TCTTTTGCAGGCATTTGATT+GGG | - | chr5_3:9929207-9929226 | Msa0797690:intron | 35.0% |
| CTTCTGTATAATTGTTTGCC+TGG | - | chr5_3:9929404-9929423 | Msa0797690:intron | 35.0% | |
| TACATCAGTATGATTGCTAC+TGG | + | chr5_3:9929438-9929457 | None:intergenic | 35.0% | |
| TACATTGTACTTCAGCACAT+TGG | + | chr5_3:9929658-9929677 | None:intergenic | 35.0% | |
| TGTGAGATGTATATCTCATC+TGG | - | chr5_3:9929678-9929697 | Msa0797690:intron | 35.0% | |
| AAAAATACGGAATGAAGGGA+AGG | - | chr5_3:9929765-9929784 | Msa0797690:intron | 35.0% | |
| AAAATACGGAATGAAGGGAA+GGG | - | chr5_3:9929766-9929785 | Msa0797690:intron | 35.0% | |
| TGGTGATTAGACCAATTACA+AGG | - | chr5_3:9930034-9930053 | Msa0797690:intron | 35.0% | |
| TGATTAGACCAATTACAAGG+TGG | - | chr5_3:9930037-9930056 | Msa0797690:intron | 35.0% | |
| TAAAAAGGCCACCTTGTAAT+TGG | + | chr5_3:9930048-9930067 | None:intergenic | 35.0% | |
| AGAAAAAGCTTGTGCAGAAT+AGG | + | chr5_3:9930390-9930409 | None:intergenic | 35.0% | |
| !! | AACTGGTTTGGAGATTCTTA+TGG | - | chr5_3:9930440-9930459 | Msa0797690:CDS | 35.0% |
| !! | ACTGGTTTGGAGATTCTTAT+GGG | - | chr5_3:9930441-9930460 | Msa0797690:CDS | 35.0% |
| ATGGGTGCTTTATATGGAAT+TGG | - | chr5_3:9930459-9930478 | Msa0797690:CDS | 35.0% | |
| TGGGTGCTTTATATGGAATT+GGG | - | chr5_3:9930460-9930479 | Msa0797690:CDS | 35.0% | |
| CCAATACATGAAACAATTGG+TGG | + | chr5_3:9930554-9930573 | None:intergenic | 35.0% | |
| CCACCAATTGTTTCATGTAT+TGG | - | chr5_3:9930551-9930570 | Msa0797690:CDS | 35.0% | |
| !! | TTTCATGTATTGGTTGTAGC+TGG | - | chr5_3:9930561-9930580 | Msa0797690:CDS | 35.0% |
| CATACACTCATTATCATGCA+GGG | - | chr5_3:9930586-9930605 | Msa0797690:CDS | 35.0% | |
| TCACAAATTGCATCAGTTAG+AGG | + | chr5_3:9930717-9930736 | None:intergenic | 35.0% | |
| ! | TTTTATTGCTCACTTACGCA+TGG | + | chr5_3:9930813-9930832 | None:intergenic | 35.0% |
| TGTTGTGAAAGAGAAGGGAA+AGG | - | chr5_3:9927619-9927638 | Msa0797690:CDS | 40.0% | |
| GTTGTGAAAGAGAAGGGAAA+GGG | - | chr5_3:9927620-9927639 | Msa0797690:CDS | 40.0% | |
| AAAGAGAAGGGAAAGGGAAA+AGG | - | chr5_3:9927626-9927645 | Msa0797690:CDS | 40.0% | |
| AAGGGAAAGGGAAAAGGTTA+TGG | - | chr5_3:9927632-9927651 | Msa0797690:CDS | 40.0% | |
| AGGGAAAAGGTTATGGAAGA+AGG | - | chr5_3:9927639-9927658 | Msa0797690:CDS | 40.0% | |
| CTAAGCAAAACCTGCTTCAT+AGG | + | chr5_3:9927751-9927770 | None:intergenic | 40.0% | |
| CCAGTAAAGACTTCGATTCA+TGG | + | chr5_3:9927978-9927997 | None:intergenic | 40.0% | |
| CCATGAATCGAAGTCTTTAC+TGG | - | chr5_3:9927975-9927994 | Msa0797690:CDS | 40.0% | |
| CAGATCTTATTGTGGATCCT+AGG | - | chr5_3:9928110-9928129 | Msa0797690:CDS | 40.0% | |
| ! | CTGGGAATTTTTGTCTTGCT+TGG | - | chr5_3:9928522-9928541 | Msa0797690:intron | 40.0% |
| GTCACAACACTCCATAGTTT+AGG | - | chr5_3:9928686-9928705 | Msa0797690:CDS | 40.0% | |
| CGGAAATTTCCTTCCTTCAT+TGG | + | chr5_3:9928791-9928810 | None:intergenic | 40.0% | |
| GGAGACGAAACTGTTATTGA+TGG | + | chr5_3:9928845-9928864 | None:intergenic | 40.0% | |
| AACTTTCATGGCGGTGTATA+TGG | + | chr5_3:9929255-9929274 | None:intergenic | 40.0% | |
| TTGCTACTGGAAAATCTTCC+AGG | + | chr5_3:9929425-9929444 | None:intergenic | 40.0% | |
| TGCGCAGCATAATGTAAAAG+AGG | - | chr5_3:9929987-9930006 | Msa0797690:intron | 40.0% | |
| GCATAATGTAAAAGAGGACC+TGG | - | chr5_3:9929993-9930012 | Msa0797690:intron | 40.0% | |
| ! | GTAATTGGTCTAATCACCAG+CGG | + | chr5_3:9930033-9930052 | None:intergenic | 40.0% |
| GCGTATCATACATTATGCTC+AGG | - | chr5_3:9930142-9930161 | Msa0797690:intron | 40.0% | |
| CTGGAGTTTGAAAAACTGGT+AGG | + | chr5_3:9930311-9930330 | None:intergenic | 40.0% | |
| CAAACCCATTCCCAAAAAGA+GGG | + | chr5_3:9930355-9930374 | None:intergenic | 40.0% | |
| ACAAACCCATTCCCAAAAAG+AGG | + | chr5_3:9930356-9930375 | None:intergenic | 40.0% | |
| !! | TTTTTGGGAATGGGTTTGTC+CGG | - | chr5_3:9930357-9930376 | Msa0797690:intron | 40.0% |
| !! | TGCACAAGCTTTTTCTGTTC+TGG | - | chr5_3:9930394-9930413 | Msa0797690:intron | 40.0% |
| !! | GCACAAGCTTTTTCTGTTCT+GGG | - | chr5_3:9930395-9930414 | Msa0797690:CDS | 40.0% |
| !! | CACAAGCTTTTTCTGTTCTG+GGG | - | chr5_3:9930396-9930415 | Msa0797690:CDS | 40.0% |
| ! | GGTGTTTTACACAACTGGTT+TGG | - | chr5_3:9930428-9930447 | Msa0797690:CDS | 40.0% |
| GGGTGCTTTATATGGAATTG+GGG | - | chr5_3:9930461-9930480 | Msa0797690:CDS | 40.0% | |
| TTTATATGGAATTGGGGCAC+TGG | - | chr5_3:9930467-9930486 | Msa0797690:CDS | 40.0% | |
| GCATACACTCATTATCATGC+AGG | - | chr5_3:9930585-9930604 | Msa0797690:CDS | 40.0% | |
| !! | ATGCAGGGTTAGTTTATCTC+AGG | - | chr5_3:9930601-9930620 | Msa0797690:CDS | 40.0% |
| TCACTTACGCATGGAAATTG+AGG | + | chr5_3:9930804-9930823 | None:intergenic | 40.0% | |
| ATTGACATTCGACACAGCTT+AGG | - | chr5_3:9930876-9930895 | Msa0797690:five_prime_UTR | 40.0% | |
| TCGACACAGCTTAGGATAAT+TGG | - | chr5_3:9930884-9930903 | Msa0797690:five_prime_UTR | 40.0% | |
| ATCTGAATGGCCTATGAAGC+AGG | - | chr5_3:9927738-9927757 | Msa0797690:CDS | 45.0% | |
| ! | ATCCAGAGTTTGGTTGGTAC+AGG | - | chr5_3:9927919-9927938 | Msa0797690:CDS | 45.0% |
| TTCCTGTACCAACCAAACTC+TGG | + | chr5_3:9927924-9927943 | None:intergenic | 45.0% | |
| ! | TGGCTAGCTGCACTAAGTTT+AGG | - | chr5_3:9928296-9928315 | Msa0797690:intron | 45.0% |
| ACTATCCCTCCCTTCAGATA+TGG | - | chr5_3:9928641-9928660 | Msa0797690:intron | 45.0% | |
| AGCTACCATATCTGAAGGGA+GGG | + | chr5_3:9928649-9928668 | None:intergenic | 45.0% | |
| TAGCTACCATATCTGAAGGG+AGG | + | chr5_3:9928650-9928669 | None:intergenic | 45.0% | |
| !! | CTATGGAGTGTTGTGACACT+AGG | + | chr5_3:9928683-9928702 | None:intergenic | 45.0% |
| ATTTCCGCAATCAAAGGCCA+TGG | - | chr5_3:9928804-9928823 | Msa0797690:CDS | 45.0% | |
| ! | GGTTTGTAAATTGGTGGCCA+TGG | + | chr5_3:9928824-9928843 | None:intergenic | 45.0% |
| ATATGGTCAATGCCAGGAAC+AGG | + | chr5_3:9929238-9929257 | None:intergenic | 45.0% | |
| TACAGCCTGTGGAACTTTCA+TGG | + | chr5_3:9929267-9929286 | None:intergenic | 45.0% | |
| GAACTAAGATCTACAGCCTG+TGG | + | chr5_3:9929278-9929297 | None:intergenic | 45.0% | |
| TTGAGGAAGTCAGGCAAATG+CGG | + | chr5_3:9929305-9929324 | None:intergenic | 45.0% | |
| TCAGCATTCTTGAGGAAGTC+AGG | + | chr5_3:9929314-9929333 | None:intergenic | 45.0% | |
| TGACCTGCACAAGCTACAAT+CGG | - | chr5_3:9929331-9929350 | Msa0797690:intron | 45.0% | |
| CTTTGCAAATCAGGCATGGA+AGG | + | chr5_3:9929374-9929393 | None:intergenic | 45.0% | |
| GAGTCTTTGCAAATCAGGCA+TGG | + | chr5_3:9929378-9929397 | None:intergenic | 45.0% | |
| ! | TGCCTGATTTGCAAAGACTC+CGG | - | chr5_3:9929378-9929397 | Msa0797690:intron | 45.0% |
| !! | AATCCTGTTTTTCCCCTTCG+TGG | - | chr5_3:9929497-9929516 | Msa0797690:intron | 45.0% |
| GCTAGCTAGCAAGCAAAACA+TGG | + | chr5_3:9930088-9930107 | None:intergenic | 45.0% | |
| GCTTGACTATGCTGGAATTG+CGG | - | chr5_3:9930164-9930183 | Msa0797690:intron | 45.0% | |
| TTCCCAAAAAGAGGGATGCA+CGG | + | chr5_3:9930347-9930366 | None:intergenic | 45.0% | |
| !! | TGCATCCCTCTTTTTGGGAA+TGG | - | chr5_3:9930347-9930366 | Msa0797690:intron | 45.0% |
| !! | GCATCCCTCTTTTTGGGAAT+GGG | - | chr5_3:9930348-9930367 | Msa0797690:intron | 45.0% |
| CCAGTTGTGTAAAACACCTC+AGG | + | chr5_3:9930426-9930445 | None:intergenic | 45.0% | |
| !! | CCTGAGGTGTTTTACACAAC+TGG | - | chr5_3:9930423-9930442 | Msa0797690:CDS | 45.0% |
| CCAGCAATGTCAAATTTCCC+AGG | + | chr5_3:9930525-9930544 | None:intergenic | 45.0% | |
| CCTGGGAAATTTGACATTGC+TGG | - | chr5_3:9930522-9930541 | Msa0797690:CDS | 45.0% | |
| !! | CAGGGTTAGTTTATCTCAGG+TGG | - | chr5_3:9930604-9930623 | Msa0797690:CDS | 45.0% |
| CGCTGCATGAGTTATCTATC+TGG | + | chr5_3:9930920-9930939 | None:intergenic | 45.0% | |
| GATTGGGTTCTTCCTGTTCC+TGG | - | chr5_3:9929223-9929242 | Msa0797690:intron | 50.0% | |
| CGGTGTATATGGTCAATGCC+AGG | + | chr5_3:9929244-9929263 | None:intergenic | 50.0% | |
| AGCCTGTGGAACTTTCATGG+CGG | + | chr5_3:9929264-9929283 | None:intergenic | 50.0% | |
| TGTGCAGGTCAGCATTCTTG+AGG | + | chr5_3:9929322-9929341 | None:intergenic | 50.0% | |
| ! | GCCTGATTTGCAAAGACTCC+GGG | - | chr5_3:9929379-9929398 | Msa0797690:intron | 50.0% |
| TCCCGGAGTCTTTGCAAATC+AGG | + | chr5_3:9929383-9929402 | None:intergenic | 50.0% | |
| GAACCACGAAGGGGAAAAAC+AGG | + | chr5_3:9929503-9929522 | None:intergenic | 50.0% | |
| ! | TTTTTCCCCTTCGTGGTTCG+AGG | - | chr5_3:9929504-9929523 | Msa0797690:intron | 50.0% |
| ! | TGTATGATACGCGCTCTGAG+TGG | + | chr5_3:9930134-9930153 | None:intergenic | 50.0% |
| ATGCTCAGGCTTGACTATGC+TGG | - | chr5_3:9930156-9930175 | Msa0797690:intron | 50.0% | |
| TAGGAGCGAAACCAACATGG+TGG | + | chr5_3:9930292-9930311 | None:intergenic | 50.0% | |
| TGGTAGGAGCGAAACCAACA+TGG | + | chr5_3:9930295-9930314 | None:intergenic | 50.0% | |
| ! | ACCCGTGCATCCCTCTTTTT+GGG | - | chr5_3:9930342-9930361 | Msa0797690:intron | 50.0% |
| TCCCAAAAAGAGGGATGCAC+GGG | + | chr5_3:9930346-9930365 | None:intergenic | 50.0% | |
| !! | CATCCATCGTTCTGGAATCC+TGG | + | chr5_3:9930502-9930521 | None:intergenic | 50.0% |
| ATTCCAGAACGATGGATGCC+TGG | - | chr5_3:9930504-9930523 | Msa0797690:CDS | 50.0% | |
| TTCCAGAACGATGGATGCCT+GGG | - | chr5_3:9930505-9930524 | Msa0797690:CDS | 50.0% | |
| ATCTCAGGTGGCGTGATCTT+CGG | - | chr5_3:9930616-9930635 | Msa0797690:exon | 50.0% | |
| GTGGCCATGGCCTTTGATTG+CGG | + | chr5_3:9928811-9928830 | None:intergenic | 55.0% | |
| CACCGCCATGAAAGTTCCAC+AGG | - | chr5_3:9929259-9929278 | Msa0797690:intron | 55.0% | |
| ! | GCTCCGATTGTAGCTTGTGC+AGG | + | chr5_3:9929337-9929356 | None:intergenic | 55.0% |
| !! | GCGGTGCTATTATGTTCGCC+AGG | + | chr5_3:9930014-9930033 | None:intergenic | 55.0% |
| GGCGAACATAATAGCACCGC+TGG | - | chr5_3:9930014-9930033 | Msa0797690:intron | 55.0% | |
| ! | ACTGGGCATTGCCACCATGT+TGG | - | chr5_3:9930278-9930297 | Msa0797690:intron | 55.0% |
| CAAAAAGAGGGATGCACGGG+TGG | + | chr5_3:9930343-9930362 | None:intergenic | 55.0% | |
| ! | CACCCGTGCATCCCTCTTTT+TGG | - | chr5_3:9930341-9930360 | Msa0797690:intron | 55.0% |
| GTGCAGAATAGGTCCTGCAC+CGG | + | chr5_3:9930379-9930398 | None:intergenic | 55.0% | |
| !! | TCTGTTCTGGGGTGAACCTG+AGG | - | chr5_3:9930407-9930426 | Msa0797690:CDS | 55.0% |
| !! | CCATCGTTCTGGAATCCTGG+TGG | + | chr5_3:9930499-9930518 | None:intergenic | 55.0% |
| CCACCAGGATTCCAGAACGA+TGG | - | chr5_3:9930496-9930515 | Msa0797690:CDS | 55.0% | |
| TTCCCAGGCATCCATCGTTC+TGG | + | chr5_3:9930510-9930529 | None:intergenic | 55.0% | |
| TCTCAGGTGGCGTGATCTTC+GGG | - | chr5_3:9930617-9930636 | Msa0797690:exon | 55.0% | |
| CCACTCCTCGAACCACGAAG+GGG | + | chr5_3:9929512-9929531 | None:intergenic | 60.0% | |
| GCCACTCCTCGAACCACGAA+GGG | + | chr5_3:9929513-9929532 | None:intergenic | 60.0% | |
| TGCCACTCCTCGAACCACGA+AGG | + | chr5_3:9929514-9929533 | None:intergenic | 60.0% | |
| TGGTTCGAGGAGTGGCAGTG+AGG | - | chr5_3:9929517-9929536 | Msa0797690:intron | 60.0% | |
| CTGAGTGGCACGAGAGGAGA+TGG | + | chr5_3:9930119-9930138 | None:intergenic | 60.0% | |
| GCACGGGTGGTGCGATATTC+TGG | + | chr5_3:9930330-9930349 | None:intergenic | 60.0% | |
| ! | GGAATGGGTTTGTCCGGTGC+AGG | - | chr5_3:9930363-9930382 | Msa0797690:intron | 60.0% |
| !! | GGGCACTGGTTTATGCCACC+AGG | - | chr5_3:9930481-9930500 | Msa0797690:CDS | 60.0% |
| CTCAGGTGGCGTGATCTTCG+GGG | - | chr5_3:9930618-9930637 | Msa0797690:exon | 60.0% | |
| CCCCTTCGTGGTTCGAGGAG+TGG | - | chr5_3:9929509-9929528 | Msa0797690:intron | 65.0% | |
| ! | CGCGCTCTGAGTGGCACGAG+AGG | + | chr5_3:9930125-9930144 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 9927265 | 9930939 | 9927265 | ID=Msa0797690;Name=Msa0797690 |
| chr5_3 | mRNA | 9927265 | 9930939 | 9927265 | ID=Msa0797690-mRNA-1;Parent=Msa0797690;Name=Msa0797690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=208|0.66|0.75|1|0.66|0.5|4|292|403 |
| chr5_3 | exon | 9927265 | 9928210 | 9927265 | ID=Msa0797690-mRNA-1:exon:4271;Parent=Msa0797690-mRNA-1 |
| chr5_3 | exon | 9928666 | 9928987 | 9928666 | ID=Msa0797690-mRNA-1:exon:4270;Parent=Msa0797690-mRNA-1 |
| chr5_3 | exon | 9930395 | 9930647 | 9930395 | ID=Msa0797690-mRNA-1:exon:4269;Parent=Msa0797690-mRNA-1 |
| chr5_3 | exon | 9930749 | 9930939 | 9930749 | ID=Msa0797690-mRNA-1:exon:4268;Parent=Msa0797690-mRNA-1 |
| chr5_3 | five_prime_UTR | 9930749 | 9930939 | 9930749 | ID=Msa0797690-mRNA-1:five_prime_utr;Parent=Msa0797690-mRNA-1 |
| chr5_3 | five_prime_UTR | 9930631 | 9930647 | 9930631 | ID=Msa0797690-mRNA-1:five_prime_utr;Parent=Msa0797690-mRNA-1 |
| chr5_3 | CDS | 9930395 | 9930630 | 9930395 | ID=Msa0797690-mRNA-1:cds;Parent=Msa0797690-mRNA-1 |
| chr5_3 | CDS | 9928666 | 9928987 | 9928666 | ID=Msa0797690-mRNA-1:cds;Parent=Msa0797690-mRNA-1 |
| chr5_3 | CDS | 9927557 | 9928210 | 9927557 | ID=Msa0797690-mRNA-1:cds;Parent=Msa0797690-mRNA-1 |
| chr5_3 | three_prime_UTR | 9927265 | 9927556 | 9927265 | ID=Msa0797690-mRNA-1:three_prime_utr;Parent=Msa0797690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
