Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149350 | sp|Q6NMC6|ABIL3_ARATH | 62.997 | 327 | 111 | 5 | 14 | 336 | 1 | 321 | 3.65e-139 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149350 | A0A072VD45 | 98.503 | 334 | 5 | 0 | 3 | 336 | 9 | 342 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0149350 | 0.841229 | 5.394521e-58 | -8.615850e-47 |
| Msa0008040 | Msa0149350 | 0.971908 | 6.553861e-134 | -8.615850e-47 |
| Msa0025160 | Msa0149350 | 0.854580 | 1.119845e-61 | -8.615850e-47 |
| Msa0025580 | Msa0149350 | 0.830889 | 2.277113e-55 | -8.615850e-47 |
| Msa0027280 | Msa0149350 | 0.830190 | 3.376582e-55 | -8.615850e-47 |
| Msa0034210 | Msa0149350 | 0.853153 | 2.885067e-61 | -8.615850e-47 |
| Msa0035340 | Msa0149350 | 0.820689 | 6.006263e-53 | -8.615850e-47 |
| Msa0035380 | Msa0149350 | 0.814633 | 1.395049e-51 | -8.615850e-47 |
| Msa0050660 | Msa0149350 | 0.874326 | 7.371484e-68 | -8.615850e-47 |
| Msa0050700 | Msa0149350 | 0.874343 | 7.272221e-68 | -8.615850e-47 |
| Msa0050790 | Msa0149350 | 0.872962 | 2.124859e-67 | -8.615850e-47 |
| Msa0054690 | Msa0149350 | 0.838610 | 2.596508e-57 | -8.615850e-47 |
| Msa0057540 | Msa0149350 | 0.866406 | 2.917670e-65 | -8.615850e-47 |
| Msa0067330 | Msa0149350 | 0.822171 | 2.732406e-53 | -8.615850e-47 |
| Msa0071860 | Msa0149350 | 0.816837 | 4.500817e-52 | -8.615850e-47 |
| Msa0072520 | Msa0149350 | 0.817408 | 3.349333e-52 | -8.615850e-47 |
| Msa0090400 | Msa0149350 | 0.824171 | 9.326989e-54 | -8.615850e-47 |
| Msa0108880 | Msa0149350 | 0.813857 | 2.069516e-51 | -8.615850e-47 |
| Msa0121330 | Msa0149350 | 0.839714 | 1.343511e-57 | -8.615850e-47 |
| Msa0123070 | Msa0149350 | 0.808789 | 2.605539e-50 | -8.615850e-47 |
| Msa0128310 | Msa0149350 | 0.849891 | 2.417147e-60 | -8.615850e-47 |
| Msa0137880 | Msa0149350 | 0.810245 | 1.268572e-50 | -8.615850e-47 |
| Msa0140280 | Msa0149350 | 0.824388 | 8.291870e-54 | -8.615850e-47 |
| Msa0146650 | Msa0149350 | 0.855571 | 5.771386e-62 | -8.615850e-47 |
| Msa0149350 | Msa0158860 | 0.823206 | 1.569591e-53 | -8.615850e-47 |
| Msa0149350 | Msa0161930 | 0.825362 | 4.886272e-54 | -8.615850e-47 |
| Msa0149350 | Msa0174440 | 0.845935 | 2.977978e-59 | -8.615850e-47 |
| Msa0149350 | Msa0174450 | 0.805334 | 1.403584e-49 | -8.615850e-47 |
| Msa0149350 | Msa0188610 | 0.821573 | 3.757885e-53 | -8.615850e-47 |
| Msa0149350 | Msa0190570 | 0.800142 | 1.655347e-48 | -8.615850e-47 |
| Msa0149350 | Msa0200050 | 0.811475 | 6.872310e-51 | -8.615850e-47 |
| Msa0149350 | Msa0230800 | 0.803037 | 4.220571e-49 | -8.615850e-47 |
| Msa0149350 | Msa0242590 | 0.802355 | 5.834682e-49 | -8.615850e-47 |
| Msa0149350 | Msa0270340 | 0.823783 | 1.150194e-53 | -8.615850e-47 |
| Msa0149350 | Msa0298470 | 0.821619 | 3.666218e-53 | -8.615850e-47 |
| Msa0149350 | Msa0369790 | 0.824065 | 9.874817e-54 | -8.615850e-47 |
| Msa0149350 | Msa0380620 | 0.808076 | 3.699970e-50 | -8.615850e-47 |
| Msa0149350 | Msa0380670 | 0.822670 | 2.092033e-53 | -8.615850e-47 |
| Msa0149350 | Msa0381730 | 0.810541 | 1.095285e-50 | -8.615850e-47 |
| Msa0149350 | Msa0400000 | 0.812049 | 5.155194e-51 | -8.615850e-47 |
| Msa0149350 | Msa0415600 | 0.808026 | 3.790112e-50 | -8.615850e-47 |
| Msa0149350 | Msa0422050 | 0.822278 | 2.580225e-53 | -8.615850e-47 |
| Msa0149350 | Msa0426530 | 0.800611 | 1.329069e-48 | -8.615850e-47 |
| Msa0149350 | Msa0430300 | 0.817890 | 2.607124e-52 | -8.615850e-47 |
| Msa0149350 | Msa0431200 | 0.825068 | 5.733998e-54 | -8.615850e-47 |
| Msa0149350 | Msa0432010 | 0.803952 | 2.727278e-49 | -8.615850e-47 |
| Msa0149350 | Msa0435210 | 0.853799 | 1.881838e-61 | -8.615850e-47 |
| Msa0149350 | Msa0464000 | 0.823724 | 1.187358e-53 | -8.615850e-47 |
| Msa0149350 | Msa0472950 | 0.842869 | 1.986457e-58 | -8.615850e-47 |
| Msa0149350 | Msa0476280 | 0.807042 | 6.131205e-50 | -8.615850e-47 |
| Msa0149350 | Msa0479320 | 0.823336 | 1.463575e-53 | -8.615850e-47 |
| Msa0149350 | Msa0509550 | 0.822756 | 1.998300e-53 | -8.615850e-47 |
| Msa0149350 | Msa0517250 | 0.840027 | 1.113391e-57 | -8.615850e-47 |
| Msa0149350 | Msa0520260 | 0.834563 | 2.787432e-56 | -8.615850e-47 |
| Msa0149350 | Msa0528570 | 0.858113 | 1.029499e-62 | -8.615850e-47 |
| Msa0149350 | Msa0530780 | 0.826534 | 2.573278e-54 | -8.615850e-47 |
| Msa0149350 | Msa0541300 | 0.857053 | 2.120398e-62 | -8.615850e-47 |
| Msa0149350 | Msa0541310 | 0.855315 | 6.852931e-62 | -8.615850e-47 |
| Msa0149350 | Msa0543660 | 0.816539 | 5.249417e-52 | -8.615850e-47 |
| Msa0149350 | Msa0548470 | 0.831146 | 1.969765e-55 | -8.615850e-47 |
| Msa0149350 | Msa0550050 | 0.808276 | 3.352913e-50 | -8.615850e-47 |
| Msa0149350 | Msa0557460 | 0.840501 | 8.373506e-58 | -8.615850e-47 |
| Msa0149350 | Msa0562350 | 0.806873 | 6.658729e-50 | -8.615850e-47 |
| Msa0149350 | Msa0563940 | 0.800221 | 1.595783e-48 | -8.615850e-47 |
| Msa0149350 | Msa0580370 | 0.811844 | 5.712873e-51 | -8.615850e-47 |
| Msa0149350 | Msa0584420 | 0.823805 | 1.136434e-53 | -8.615850e-47 |
| Msa0149350 | Msa0585020 | 0.852350 | 4.890458e-61 | -8.615850e-47 |
| Msa0149350 | Msa0587620 | 0.826281 | 2.956479e-54 | -8.615850e-47 |
| Msa0149350 | Msa0597270 | 0.848409 | 6.243232e-60 | -8.615850e-47 |
| Msa0149350 | Msa0605560 | 0.806746 | 7.081385e-50 | -8.615850e-47 |
| Msa0149350 | Msa0616210 | 0.827154 | 1.829778e-54 | -8.615850e-47 |
| Msa0149350 | Msa0621710 | 0.816186 | 6.295406e-52 | -8.615850e-47 |
| Msa0149350 | Msa0640200 | 0.818039 | 2.413137e-52 | -8.615850e-47 |
| Msa0149350 | Msa0644410 | 0.845336 | 4.328737e-59 | -8.615850e-47 |
| Msa0149350 | Msa0646510 | 0.821563 | 3.777538e-53 | -8.615850e-47 |
| Msa0149350 | Msa0655700 | 0.838504 | 2.765508e-57 | -8.615850e-47 |
| Msa0149350 | Msa0658640 | 0.800902 | 1.158762e-48 | -8.615850e-47 |
| Msa0149350 | Msa0661150 | 0.854572 | 1.125837e-61 | -8.615850e-47 |
| Msa0149350 | Msa0665620 | 0.814715 | 1.337498e-51 | -8.615850e-47 |
| Msa0149350 | Msa0666700 | 0.819268 | 1.269767e-52 | -8.615850e-47 |
| Msa0149350 | Msa0670100 | 0.804052 | 2.599772e-49 | -8.615850e-47 |
| Msa0149350 | Msa0675330 | 0.854338 | 1.315440e-61 | -8.615850e-47 |
| Msa0149350 | Msa0678490 | 0.812967 | 3.248142e-51 | -8.615850e-47 |
| Msa0149350 | Msa0687090 | 0.804284 | 2.326106e-49 | -8.615850e-47 |
| Msa0149350 | Msa0699540 | 0.828061 | 1.108289e-54 | -8.615850e-47 |
| Msa0149350 | Msa0700460 | 0.815512 | 8.902532e-52 | -8.615850e-47 |
| Msa0149350 | Msa0713700 | 0.820095 | 8.222046e-53 | -8.615850e-47 |
| Msa0149350 | Msa0724800 | 0.813187 | 2.905610e-51 | -8.615850e-47 |
| Msa0149350 | Msa0725750 | 0.810303 | 1.232915e-50 | -8.615850e-47 |
| Msa0149350 | Msa0735780 | 0.820703 | 5.961649e-53 | -8.615850e-47 |
| Msa0149350 | Msa0738700 | 0.837877 | 4.010472e-57 | -8.615850e-47 |
| Msa0149350 | Msa0741220 | 0.812199 | 4.781038e-51 | -8.615850e-47 |
| Msa0149350 | Msa0756490 | 0.846513 | 2.072443e-59 | -8.615850e-47 |
| Msa0149350 | Msa0761670 | 0.811772 | 5.922567e-51 | -8.615850e-47 |
| Msa0149350 | Msa0778550 | 0.814177 | 1.759781e-51 | -8.615850e-47 |
| Msa0149350 | Msa0792370 | 0.810225 | 1.281336e-50 | -8.615850e-47 |
| Msa0149350 | Msa0795870 | 0.812776 | 3.576063e-51 | -8.615850e-47 |
| Msa0149350 | Msa0797690 | -0.800709 | 1.269121e-48 | -8.615850e-47 |
| Msa0149350 | Msa0815920 | 0.817635 | 2.976699e-52 | -8.615850e-47 |
| Msa0149350 | Msa0819170 | 0.844267 | 8.401929e-59 | -8.615850e-47 |
| Msa0149350 | Msa0833650 | 0.811052 | 8.487897e-51 | -8.615850e-47 |
| Msa0149350 | Msa0835490 | 0.819519 | 1.113233e-52 | -8.615850e-47 |
| Msa0149350 | Msa0843050 | 0.802429 | 5.633637e-49 | -8.615850e-47 |
| Msa0149350 | Msa0859290 | 0.855769 | 5.052624e-62 | -8.615850e-47 |
| Msa0149350 | Msa0981320 | 0.806168 | 9.376872e-50 | -8.615850e-47 |
| Msa0149350 | Msa1009950 | 0.849494 | 3.120157e-60 | -8.615850e-47 |
| Msa0149350 | Msa1021590 | 0.816073 | 6.671972e-52 | -8.615850e-47 |
| Msa0149350 | Msa1035570 | 0.803465 | 3.441587e-49 | -8.615850e-47 |
| Msa0149350 | Msa1035610 | 0.819163 | 1.341594e-52 | -8.615850e-47 |
| Msa0149350 | Msa1042160 | 0.877655 | 5.277704e-69 | -8.615850e-47 |
| Msa0149350 | Msa1042190 | 0.877638 | 5.353051e-69 | -8.615850e-47 |
| Msa0149350 | Msa1044680 | 0.813709 | 2.231715e-51 | -8.615850e-47 |
| Msa0149350 | Msa1045140 | 0.800406 | 1.463194e-48 | -8.615850e-47 |
| Msa0149350 | Msa1078820 | 0.804849 | 1.773081e-49 | -8.615850e-47 |
| Msa0149350 | Msa1078970 | 0.809299 | 2.026375e-50 | -8.615850e-47 |
| Msa0149350 | Msa1080000 | 0.836033 | 1.186191e-56 | -8.615850e-47 |
| Msa0149350 | Msa1081390 | 0.815525 | 8.841634e-52 | -8.615850e-47 |
| Msa0149350 | Msa1081690 | 0.842433 | 2.594055e-58 | -8.615850e-47 |
| Msa0149350 | Msa1090140 | 0.805419 | 1.347484e-49 | -8.615850e-47 |
| Msa0149350 | Msa1105640 | 0.822013 | 2.972219e-53 | -8.615850e-47 |
| Msa0149350 | Msa1105780 | 0.809498 | 1.837017e-50 | -8.615850e-47 |
| Msa0149350 | Msa1116220 | 0.827176 | 1.807831e-54 | -8.615850e-47 |
| Msa0149350 | Msa1116660 | 0.825105 | 5.618639e-54 | -8.615850e-47 |
| Msa0149350 | Msa1123210 | 0.809235 | 2.092039e-50 | -8.615850e-47 |
| Msa0149350 | Msa1123970 | 0.804912 | 1.720142e-49 | -8.615850e-47 |
| Msa0149350 | Msa1132530 | 0.802005 | 6.887780e-49 | -8.615850e-47 |
| Msa0149350 | Msa1132840 | 0.809891 | 1.512207e-50 | -8.615850e-47 |
| Msa0149350 | Msa1148960 | 0.812277 | 4.596065e-51 | -8.615850e-47 |
| Msa0149350 | Msa1161680 | 0.800504 | 1.397391e-48 | -8.615850e-47 |
| Msa0149350 | Msa1162880 | 0.800918 | 1.150460e-48 | -8.615850e-47 |
| Msa0149350 | Msa1166190 | 0.809744 | 1.626114e-50 | -8.615850e-47 |
| Msa0149350 | Msa1166290 | 0.802621 | 5.142687e-49 | -8.615850e-47 |
| Msa0149350 | Msa1167470 | 0.870789 | 1.119092e-66 | -8.615850e-47 |
| Msa0149350 | Msa1169650 | 0.802371 | 5.791394e-49 | -8.615850e-47 |
| Msa0149350 | Msa1226520 | 0.802925 | 4.451324e-49 | -8.615850e-47 |
| Msa0149350 | Msa1240770 | 0.823119 | 1.644408e-53 | -8.615850e-47 |
| Msa0149350 | Msa1263780 | 0.822608 | 2.162702e-53 | -8.615850e-47 |
| Msa0149350 | Msa1282260 | 0.839750 | 1.314808e-57 | -8.615850e-47 |
| Msa0149350 | Msa1321340 | 0.834536 | 2.831778e-56 | -8.615850e-47 |
| Msa0149350 | Msa1343170 | 0.804427 | 2.171593e-49 | -8.615850e-47 |
| Msa0149350 | Msa1343180 | 0.814811 | 1.273899e-51 | -8.615850e-47 |
| Msa0149350 | Msa1359690 | 0.818762 | 1.654638e-52 | -8.615850e-47 |
| Msa0149350 | Msa1364410 | 0.813753 | 2.181557e-51 | -8.615850e-47 |
| Msa0149350 | Msa1368750 | 0.804210 | 2.409946e-49 | -8.615850e-47 |
| Msa0149350 | Msa1374790 | 0.814156 | 1.778134e-51 | -8.615850e-47 |
| Msa0149350 | Msa1383310 | 0.820469 | 6.746060e-53 | -8.615850e-47 |
| Msa0149350 | Msa1384460 | 0.850207 | 1.971373e-60 | -8.615850e-47 |
| Msa0149350 | Msa1393780 | 0.815352 | 9.663091e-52 | -8.615850e-47 |
| Msa0149350 | Msa1409410 | 0.852785 | 3.675240e-61 | -8.615850e-47 |
| Msa0149350 | Msa1410160 | 0.803807 | 2.922284e-49 | -8.615850e-47 |
| Msa0149350 | Msa1415540 | 0.852159 | 5.544195e-61 | -8.615850e-47 |
| Msa0149350 | Msa1437930 | 0.809500 | 1.834877e-50 | -8.615850e-47 |
| Msa0149350 | Msa1440630 | 0.874736 | 5.348104e-68 | -8.615850e-47 |
| Msa0149350 | Msa1451820 | 0.813804 | 2.126681e-51 | -8.615850e-47 |
| Msa0149350 | Msa1452140 | 0.849204 | 3.756975e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149350 | MtrunA17_Chr1g0146911 | 99.071 | 323 | 3 | 0 | 14 | 336 | 1 | 323 | 0.0 | 663 |
| Msa0149350 | MtrunA17_Chr3g0127011 | 75.229 | 327 | 76 | 3 | 14 | 336 | 1 | 326 | 2.12e-178 | 496 |
| Msa0149350 | MtrunA17_Chr8g0348041 | 52.672 | 131 | 62 | 0 | 26 | 156 | 15 | 145 | 1.21e-41 | 147 |
| Msa0149350 | MtrunA17_Chr7g0275191 | 50.000 | 134 | 65 | 1 | 31 | 162 | 2 | 135 | 3.74e-38 | 137 |
| Msa0149350 | MtrunA17_Chr6g0485851 | 28.926 | 121 | 85 | 1 | 34 | 154 | 19 | 138 | 1.07e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149350 | AT5G24310.1 | 62.997 | 327 | 111 | 5 | 14 | 336 | 1 | 321 | 3.71e-140 | 400 |
| Msa0149350 | AT3G49290.1 | 63.636 | 319 | 105 | 6 | 21 | 336 | 2 | 312 | 1.40e-138 | 395 |
| Msa0149350 | AT3G49290.2 | 63.636 | 319 | 105 | 6 | 21 | 336 | 2 | 312 | 1.40e-138 | 395 |
| Msa0149350 | AT5G24310.4 | 63.438 | 320 | 107 | 5 | 21 | 336 | 2 | 315 | 4.95e-138 | 394 |
| Msa0149350 | AT5G24310.3 | 60.550 | 327 | 105 | 6 | 14 | 336 | 1 | 307 | 6.81e-129 | 371 |
| Msa0149350 | AT5G24310.2 | 66.055 | 218 | 72 | 2 | 21 | 236 | 2 | 219 | 7.76e-98 | 289 |
| Msa0149350 | AT5G42030.1 | 38.079 | 302 | 147 | 5 | 26 | 324 | 14 | 278 | 5.52e-59 | 191 |
| Msa0149350 | AT5G42030.2 | 44.017 | 234 | 107 | 3 | 26 | 256 | 14 | 226 | 3.51e-55 | 183 |
| Msa0149350 | AT5G42030.3 | 46.023 | 176 | 83 | 1 | 26 | 201 | 14 | 177 | 1.50e-45 | 154 |
| Msa0149350 | AT2G46225.3 | 49.618 | 131 | 66 | 0 | 26 | 156 | 12 | 142 | 1.71e-38 | 138 |
| Msa0149350 | AT2G46225.1 | 49.618 | 131 | 66 | 0 | 26 | 156 | 12 | 142 | 2.35e-38 | 138 |
| Msa0149350 | AT2G46225.2 | 49.618 | 131 | 66 | 0 | 26 | 156 | 12 | 142 | 2.99e-38 | 139 |
| Msa0149350 | AT5G42030.4 | 33.465 | 254 | 129 | 5 | 74 | 324 | 15 | 231 | 2.39e-35 | 129 |
Find 76 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAAAACTTCATCATAAT+TGG | 0.201171 | 1_4:+10064212 | None:intergenic |
| ATAAATACTGTGGATCATTT+AGG | 0.221162 | 1_4:-10063861 | Msa0149350:CDS |
| TAACAAGTCACTCACTTTAT+AGG | 0.234312 | 1_4:+10063830 | None:intergenic |
| ATATAACGTTTGTGATGTTT+TGG | 0.268290 | 1_4:+10063368 | None:intergenic |
| CTTATGGTTGCAATATATAA+AGG | 0.284749 | 1_4:+10064831 | None:intergenic |
| ACAATAGTAGTTGAAGAAAA+TGG | 0.289751 | 1_4:+10062072 | None:intergenic |
| ATCTTCCCCATGAATGAAAA+AGG | 0.307980 | 1_4:+10064264 | None:intergenic |
| ACTCTTTCCTTGCATTCTAT+TGG | 0.329751 | 1_4:+10062222 | None:intergenic |
| GTGGATCTGTTGCTTGAGTT+TGG | 0.358344 | 1_4:+10062586 | None:intergenic |
| GTAGTTGATCTACCAGTCTT+TGG | 0.366290 | 1_4:+10062610 | None:intergenic |
| ACCCTTACTCTTGCATTTGA+AGG | 0.367421 | 1_4:+10062556 | None:intergenic |
| AAGATGATTGGCATCACTTC+AGG | 0.368367 | 1_4:-10063137 | Msa0149350:CDS |
| CGACACTTCAAAGGTGTGTT+TGG | 0.368611 | 1_4:-10062144 | Msa0149350:three_prime_UTR |
| TCCTTTCTTGCAGTATCCTT+CGG | 0.371593 | 1_4:-10062425 | Msa0149350:intron |
| GCTCTTTGATGATAGTCTAA+TGG | 0.375978 | 1_4:-10064178 | Msa0149350:intron |
| AGAAGACGTTTACTCTTACT+AGG | 0.379538 | 1_4:+10062334 | None:intergenic |
| GTCCTTCAAATGCAAGAGTA+AGG | 0.381834 | 1_4:-10062558 | Msa0149350:CDS |
| AGTATTTATAAGAGCTTTGA+CGG | 0.399045 | 1_4:+10063875 | None:intergenic |
| TCAACAAAATCAAAATATAT+AGG | 0.400778 | 1_4:-10063177 | Msa0149350:CDS |
| CAGATTGGTTGAAACATTGA+AGG | 0.425974 | 1_4:-10063904 | Msa0149350:CDS |
| TAGACTTGCGCCTGCTAAGT+AGG | 0.434681 | 1_4:+10062305 | None:intergenic |
| TGCAAGCTATTCAATCAAAT+AGG | 0.440167 | 1_4:+10061988 | None:intergenic |
| ATGTGTGTCGGTAAGATCAT+AGG | 0.453539 | 1_4:-10065016 | Msa0149350:five_prime_UTR |
| GAAGACGTTTACTCTTACTA+GGG | 0.455154 | 1_4:+10062335 | None:intergenic |
| GTTTGATTTCTTGTCGGGCA+TGG | 0.462646 | 1_4:-10064980 | Msa0149350:five_prime_UTR |
| TTCTTAAGTCCCTACTTAGC+AGG | 0.464333 | 1_4:-10062315 | Msa0149350:CDS |
| AATGATCCGGTACGCGAAAG+TGG | 0.466249 | 1_4:+10062652 | None:intergenic |
| GAGTGACTTGTTAGATGAAA+AGG | 0.466681 | 1_4:-10063820 | Msa0149350:CDS |
| GCCAATCATCTTCATCATCT+AGG | 0.468564 | 1_4:+10063148 | None:intergenic |
| ACGTTTATCATGTATCGAAC+AGG | 0.471944 | 1_4:-10063772 | Msa0149350:intron |
| GTGGTCAGCAGCTGCACTTA+TGG | 0.472814 | 1_4:+10064815 | None:intergenic |
| TCTTTACAACCTCAGAGAGT+TGG | 0.476414 | 1_4:-10062849 | Msa0149350:CDS |
| AGGTTTCCACTTTCGCGTAC+CGG | 0.482355 | 1_4:-10062658 | Msa0149350:CDS |
| TGCATTTGAAGGACTTGTGG+TGG | 0.485150 | 1_4:+10062567 | None:intergenic |
| TTGGAAGCCATTCGAGGTAG+AGG | 0.487405 | 1_4:+10064231 | None:intergenic |
| TTCAATCAAATAGGCAAAGC+AGG | 0.495672 | 1_4:+10061997 | None:intergenic |
| TCTACCAGTCTTTGGTGTTG+TGG | 0.505674 | 1_4:+10062618 | None:intergenic |
| TTACTCATAGTTCTAAATTG+TGG | 0.507630 | 1_4:+10064796 | None:intergenic |
| GCTGATTTGCGCGGCTCCGA+AGG | 0.523701 | 1_4:+10062409 | None:intergenic |
| TGACACGTTATACACATACT+TGG | 0.525305 | 1_4:-10062275 | Msa0149350:CDS |
| TGTTGAGTTGGTACCATGCA+AGG | 0.528628 | 1_4:+10063194 | None:intergenic |
| ACTCTCTGAGGTTGTAAAGA+AGG | 0.529000 | 1_4:+10062852 | None:intergenic |
| TCTTGCATTTGAAGGACTTG+TGG | 0.532230 | 1_4:+10062564 | None:intergenic |
| TTCATTCACTTCACCCAACA+TGG | 0.537497 | 1_4:-10062820 | Msa0149350:CDS |
| ACCTAGATGATGAAGATGAT+TGG | 0.546777 | 1_4:-10063149 | Msa0149350:CDS |
| TAGCAGGCGCAAGTCTAAGA+AGG | 0.559475 | 1_4:-10062299 | Msa0149350:CDS |
| TCAGTTGGGGAGACCTTGCA+TGG | 0.559628 | 1_4:-10063207 | Msa0149350:intron |
| TCATAATTGGAAGCCATTCG+AGG | 0.561383 | 1_4:+10064225 | None:intergenic |
| GTTTACTCTTACTAGGGTGT+TGG | 0.563511 | 1_4:+10062341 | None:intergenic |
| AGACTTGCGCCTGCTAAGTA+GGG | 0.563669 | 1_4:+10062306 | None:intergenic |
| ACACTTGCCAATAGAATGCA+AGG | 0.571373 | 1_4:-10062229 | Msa0149350:three_prime_UTR |
| GGATCTACTTGACAATGATC+CGG | 0.571708 | 1_4:+10062639 | None:intergenic |
| CCTCATGATCCATAAAACCT+TGG | 0.572903 | 1_4:+10063423 | None:intergenic |
| TAGAGAATAAAGACATGCCA+AGG | 0.576912 | 1_4:-10063440 | Msa0149350:CDS |
| ATTTAGTACAATATGTGTGT+CGG | 0.577069 | 1_4:-10065028 | Msa0149350:five_prime_UTR |
| ATGAAGCACCGACACTTCAA+AGG | 0.578484 | 1_4:-10062153 | Msa0149350:three_prime_UTR |
| ACAAAATGTGGCTGCAACTG+CGG | 0.579244 | 1_4:-10064872 | Msa0149350:five_prime_UTR |
| TAGACTATCATCAAAGAGCA+AGG | 0.589354 | 1_4:+10064182 | None:intergenic |
| CGCATTGAAGCTGATTTGCG+CGG | 0.592705 | 1_4:+10062400 | None:intergenic |
| AGATCCACAACACCAAAGAC+TGG | 0.593009 | 1_4:-10062622 | Msa0149350:CDS |
| GATTGGCATCACTTCAGGAA+TGG | 0.593721 | 1_4:-10063132 | Msa0149350:intron |
| CAAACACACCTTTGAAGTGT+CGG | 0.595147 | 1_4:+10062145 | None:intergenic |
| AACACAACCTCTACCTCGAA+TGG | 0.597696 | 1_4:-10064238 | Msa0149350:CDS |
| AGCGGACAGTTTCGCCACAC+AGG | 0.598006 | 1_4:-10062678 | Msa0149350:CDS |
| TGAGGTTGTAAAGAAGGTGA+TGG | 0.601446 | 1_4:+10062858 | None:intergenic |
| TCCTTCAAATGCAAGAGTAA+GGG | 0.605270 | 1_4:-10062557 | Msa0149350:intron |
| CAAAGCTCTTATAAATACTG+TGG | 0.609357 | 1_4:-10063871 | Msa0149350:CDS |
| TTCGATACTGAAACAAAATG+TGG | 0.614629 | 1_4:-10064884 | Msa0149350:five_prime_UTR |
| AAACGCCAACGTCTACCTCA+AGG | 0.625238 | 1_4:-10062987 | Msa0149350:intron |
| ATGTATGTGAAATAGAGAAG+CGG | 0.632958 | 1_4:-10062696 | Msa0149350:intron |
| TTGTACCTTGAGGTAGACGT+TGG | 0.633325 | 1_4:+10062982 | None:intergenic |
| TGAGAAAATAAGAAACAGAG+AGG | 0.657237 | 1_4:+10061965 | None:intergenic |
| CGCGAAAGTGGAAACCTGTG+TGG | 0.665252 | 1_4:+10062664 | None:intergenic |
| TGATACGACATCAACACATG+TGG | 0.672406 | 1_4:-10062111 | Msa0149350:three_prime_UTR |
| AATCATCTTCATCATCTAGG+TGG | 0.697533 | 1_4:+10063151 | None:intergenic |
| ATAGTTCTAAATTACAAACG+CGG | 0.756645 | 1_4:-10064920 | Msa0149350:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTCTCAAAAATTTAA+GGG | + | chr1_4:10062763-10062782 | None:intergenic | 10.0% |
| !! | TAAAAATTCTCAAAAATTTA+AGG | + | chr1_4:10062764-10062783 | None:intergenic | 10.0% |
| !!! | CTATATCATTTTAATGAAAA+AGG | + | chr1_4:10061957-10061976 | None:intergenic | 15.0% |
| !! | TATTATCACAAATCAAAAAA+GGG | + | chr1_4:10062484-10062503 | None:intergenic | 15.0% |
| !! | ATATTATCACAAATCAAAAA+AGG | + | chr1_4:10062485-10062504 | None:intergenic | 15.0% |
| !!! | AAAAATAAAGAAGAGTATAA+AGG | + | chr1_4:10062943-10062962 | None:intergenic | 15.0% |
| !! | ATGAGTAATGTTAATATAAT+GGG | + | chr1_4:10063624-10063643 | None:intergenic | 15.0% |
| !! | TCAACAAAATCAAAATATAT+AGG | - | chr1_4:10063716-10063735 | Msa0149350:intron | 15.0% |
| !!! | TTGTATTTTCTTTATCATAG+TGG | - | chr1_4:10062152-10062171 | Msa0149350:three_prime_UTR | 20.0% |
| !!! | TATTTTAGAAGACAGATAAA+GGG | + | chr1_4:10062203-10062222 | None:intergenic | 20.0% |
| !!! | TTATTTTAGAAGACAGATAA+AGG | + | chr1_4:10062204-10062223 | None:intergenic | 20.0% |
| !!! | TTATCTGTCTTCTAAAATAA+TGG | - | chr1_4:10062204-10062223 | Msa0149350:three_prime_UTR | 20.0% |
| !! | AAAAAAAAAAACCTCTTAAG+AGG | + | chr1_4:10062299-10062318 | None:intergenic | 20.0% |
| !!! | TAAATTTTGATTTGTGATAG+AGG | - | chr1_4:10062333-10062352 | Msa0149350:CDS | 20.0% |
| !!! | AAATTTTGATTTGTGATAGA+GGG | - | chr1_4:10062334-10062353 | Msa0149350:CDS | 20.0% |
| !! | TCAATGTTATTGATAAAAGT+AGG | - | chr1_4:10062584-10062603 | Msa0149350:CDS | 20.0% |
| !!! | AATTAACTCACATTTGTTTT+TGG | + | chr1_4:10062903-10062922 | None:intergenic | 20.0% |
| !!! | TTTGTATTTTATTTGCAGAT+TGG | - | chr1_4:10062974-10062993 | Msa0149350:intron | 20.0% |
| !! | GCTTATAACTTAATTGAAAA+CGG | + | chr1_4:10063262-10063281 | None:intergenic | 20.0% |
| !! | CATGAGTAATGTTAATATAA+TGG | + | chr1_4:10063625-10063644 | None:intergenic | 20.0% |
| !!! | ATATTTTGATTTTGTTGAGT+TGG | + | chr1_4:10063714-10063733 | None:intergenic | 20.0% |
| !!! | TTTTTTCATTCCACTTTTAT+AGG | - | chr1_4:10063807-10063826 | Msa0149350:CDS | 20.0% |
| !! | AATCATGTTGTTATAGTAAA+GGG | - | chr1_4:10064006-10064025 | Msa0149350:CDS | 20.0% |
| !!! | GTAAATATTTTATTCTGAAC+TGG | - | chr1_4:10064160-10064179 | Msa0149350:intron | 20.0% |
| ! | ATTTAGTACAATATGTGTGT+CGG | - | chr1_4:10061865-10061884 | Msa0149350:three_prime_UTR | 25.0% |
| !!! | TCTTTTGTTTGATTTCTTGT+CGG | - | chr1_4:10061907-10061926 | Msa0149350:three_prime_UTR | 25.0% |
| !!! | ATAGTTCTAAATTACAAACG+CGG | - | chr1_4:10061973-10061992 | Msa0149350:three_prime_UTR | 25.0% |
| !!! | GCAATATATAAAGGTTTTAG+AGG | + | chr1_4:10062056-10062075 | None:intergenic | 25.0% |
| ! | CTTATGGTTGCAATATATAA+AGG | + | chr1_4:10062065-10062084 | None:intergenic | 25.0% |
| !!! | TTACTCATAGTTCTAAATTG+TGG | + | chr1_4:10062100-10062119 | None:intergenic | 25.0% |
| !! | GGTTGTTGTTGTTATTAAAT+AGG | - | chr1_4:10062233-10062252 | Msa0149350:three_prime_UTR | 25.0% |
| !! | GCTTTTCATTTTGAACTATT+TGG | - | chr1_4:10062272-10062291 | Msa0149350:CDS | 25.0% |
| !!! | AATTTTGATTTGTGATAGAG+GGG | - | chr1_4:10062335-10062354 | Msa0149350:CDS | 25.0% |
| ! | AAAAGTAAACAAGATACAGT+TGG | + | chr1_4:10062530-10062549 | None:intergenic | 25.0% |
| ! | CATGAAAACTTCATCATAAT+TGG | + | chr1_4:10062684-10062703 | None:intergenic | 25.0% |
| ! | AAATTTAAGGGATGAATTAC+TGG | + | chr1_4:10062751-10062770 | None:intergenic | 25.0% |
| !!! | CTTTTTTCATCTACATTTCT+AGG | - | chr1_4:10062807-10062826 | Msa0149350:CDS | 25.0% |
| !! | AGTATTTATAAGAGCTTTGA+CGG | + | chr1_4:10063021-10063040 | None:intergenic | 25.0% |
| ! | ATAAATACTGTGGATCATTT+AGG | - | chr1_4:10063032-10063051 | Msa0149350:intron | 25.0% |
| !!! | TTTATTTCCATTAGCTTTTC+GGG | + | chr1_4:10063301-10063320 | None:intergenic | 25.0% |
| !!! | GTTTATTTCCATTAGCTTTT+CGG | + | chr1_4:10063302-10063321 | None:intergenic | 25.0% |
| ! | ATAAACTGAAAAACAGCTTA+TGG | - | chr1_4:10063316-10063335 | Msa0149350:intron | 25.0% |
| ! | GAAAGTAATGTGAAAAACTT+TGG | - | chr1_4:10063360-10063379 | Msa0149350:CDS | 25.0% |
| !! | AGCATAATTTTTCCATAATG+TGG | - | chr1_4:10063425-10063444 | Msa0149350:CDS | 25.0% |
| !! | ATATAACGTTTGTGATGTTT+TGG | + | chr1_4:10063528-10063547 | None:intergenic | 25.0% |
| ! | AATGTATTTATAAACTTGCC+TGG | + | chr1_4:10063555-10063574 | None:intergenic | 25.0% |
| ! | AGAATTTCAAAATAGAGTTG+AGG | + | chr1_4:10063580-10063599 | None:intergenic | 25.0% |
| ! | TCAATTTCACATATTCAGTT+GGG | - | chr1_4:10063672-10063691 | Msa0149350:intron | 25.0% |
| ! | AAGATTGTATCCTATAAAAG+TGG | + | chr1_4:10063820-10063839 | None:intergenic | 25.0% |
| ! | CAATCATGTTGTTATAGTAA+AGG | - | chr1_4:10064005-10064024 | Msa0149350:CDS | 25.0% |
| !!! | TATAGTACCCAAATCTTTTT+TGG | + | chr1_4:10064099-10064118 | None:intergenic | 25.0% |
| ! | ACATTAAAACGTGAATATTG+TGG | - | chr1_4:10064418-10064437 | Msa0149350:intron | 25.0% |
| ! | AAAGAACAAAAACTACGTAA+AGG | - | chr1_4:10064700-10064719 | Msa0149350:intron | 25.0% |
| ! | AAGAACAAAAACTACGTAAA+GGG | - | chr1_4:10064701-10064720 | Msa0149350:intron | 25.0% |
| ! | ACAATAGTAGTTGAAGAAAA+TGG | + | chr1_4:10064824-10064843 | None:intergenic | 25.0% |
| !! | CTTTTGTTTGATTTCTTGTC+GGG | - | chr1_4:10061908-10061927 | Msa0149350:three_prime_UTR | 30.0% |
| TTCGATACTGAAACAAAATG+TGG | - | chr1_4:10062009-10062028 | Msa0149350:three_prime_UTR | 30.0% | |
| !! | CTTCTAAAATAATGGTTGAC+TGG | - | chr1_4:10062212-10062231 | Msa0149350:three_prime_UTR | 30.0% |
| !!! | CATTTGTTTTTGGTCATCAT+TGG | + | chr1_4:10062893-10062912 | None:intergenic | 30.0% |
| CAAAGCTCTTATAAATACTG+TGG | - | chr1_4:10063022-10063041 | Msa0149350:intron | 30.0% | |
| TAACAAGTCACTCACTTTAT+AGG | + | chr1_4:10063066-10063085 | None:intergenic | 30.0% | |
| TACTTTCTTAAGTGCCTTAT+TGG | + | chr1_4:10063347-10063366 | None:intergenic | 30.0% | |
| AACTTTGGTGAATTTCCATT+TGG | - | chr1_4:10063375-10063394 | Msa0149350:CDS | 30.0% | |
| ! | AAACGTAACAGTTTTCCAAA+TGG | + | chr1_4:10063393-10063412 | None:intergenic | 30.0% |
| TTCTCTAATGTACCACATTA+TGG | + | chr1_4:10063440-10063459 | None:intergenic | 30.0% | |
| CTCAATTTCACATATTCAGT+TGG | - | chr1_4:10063671-10063690 | Msa0149350:intron | 30.0% | |
| CAATTTCACATATTCAGTTG+GGG | - | chr1_4:10063673-10063692 | Msa0149350:intron | 30.0% | |
| TGTGCAGTTTAATTGAGAAT+TGG | + | chr1_4:10063963-10063982 | None:intergenic | 30.0% | |
| !!! | AAATCTTTTTTGGCCATGTT+GGG | + | chr1_4:10064089-10064108 | None:intergenic | 30.0% |
| AACATGGCCAAAAAAGATTT+GGG | - | chr1_4:10064089-10064108 | Msa0149350:intron | 30.0% | |
| ATGTATGTGAAATAGAGAAG+CGG | - | chr1_4:10064197-10064216 | Msa0149350:CDS | 30.0% | |
| ! | AAAAACTACGTAAAGGGTTT+TGG | - | chr1_4:10064707-10064726 | Msa0149350:intron | 30.0% |
| ! | AAAACTACGTAAAGGGTTTT+GGG | - | chr1_4:10064708-10064727 | Msa0149350:intron | 30.0% |
| !!! | GTGTCGTTTTAGTGTTATAT+AGG | - | chr1_4:10064864-10064883 | Msa0149350:five_prime_UTR | 30.0% |
| TGCAAGCTATTCAATCAAAT+AGG | + | chr1_4:10064908-10064927 | None:intergenic | 30.0% | |
| TGAGAAAATAAGAAACAGAG+AGG | + | chr1_4:10064931-10064950 | None:intergenic | 30.0% | |
| TAGAAGACAGATAAAGGGAA+AGG | + | chr1_4:10062198-10062217 | None:intergenic | 35.0% | |
| AACTATTTGGACCTCTTAAG+AGG | - | chr1_4:10062285-10062304 | Msa0149350:CDS | 35.0% | |
| GTTGCATACAATACACCAAA+TGG | - | chr1_4:10062406-10062425 | Msa0149350:CDS | 35.0% | |
| CATACAATACACCAAATGGT+GGG | - | chr1_4:10062410-10062429 | Msa0149350:CDS | 35.0% | |
| TGAATGAAAAAGGTGGAAGA+AGG | + | chr1_4:10062622-10062641 | None:intergenic | 35.0% | |
| !! | TCTTCCACCTTTTTCATTCA+TGG | - | chr1_4:10062622-10062641 | Msa0149350:CDS | 35.0% |
| !! | CTTCCACCTTTTTCATTCAT+GGG | - | chr1_4:10062623-10062642 | Msa0149350:CDS | 35.0% |
| !! | TTCCACCTTTTTCATTCATG+GGG | - | chr1_4:10062624-10062643 | Msa0149350:CDS | 35.0% |
| ATCTTCCCCATGAATGAAAA+AGG | + | chr1_4:10062632-10062651 | None:intergenic | 35.0% | |
| TAGACTATCATCAAAGAGCA+AGG | + | chr1_4:10062714-10062733 | None:intergenic | 35.0% | |
| ! | GCTCTTTGATGATAGTCTAA+TGG | - | chr1_4:10062715-10062734 | Msa0149350:intron | 35.0% |
| ! | CAGATTGGTTGAAACATTGA+AGG | - | chr1_4:10062989-10063008 | Msa0149350:CDS | 35.0% |
| !! | GAGTGACTTGTTAGATGAAA+AGG | - | chr1_4:10063073-10063092 | Msa0149350:intron | 35.0% |
| ! | GAAAAGGTCACTGAAGTTTT+TGG | - | chr1_4:10063089-10063108 | Msa0149350:intron | 35.0% |
| ACGTTTATCATGTATCGAAC+AGG | - | chr1_4:10063121-10063140 | Msa0149350:intron | 35.0% | |
| TAGAGAATAAAGACATGCCA+AGG | - | chr1_4:10063453-10063472 | Msa0149350:intron | 35.0% | |
| ! | AAAGACATGCCAAGGTTTTA+TGG | - | chr1_4:10063461-10063480 | Msa0149350:intron | 35.0% |
| !! | CAAGGTTTTATGGATCATGA+GGG | - | chr1_4:10063471-10063490 | Msa0149350:intron | 35.0% |
| !! | AAGGTTTTATGGATCATGAG+GGG | - | chr1_4:10063472-10063491 | Msa0149350:intron | 35.0% |
| ! | CACAAACGTTATATTTTGCC+AGG | - | chr1_4:10063534-10063553 | Msa0149350:intron | 35.0% |
| AATCATCTTCATCATCTAGG+TGG | + | chr1_4:10063745-10063764 | None:intergenic | 35.0% | |
| ACCTAGATGATGAAGATGAT+TGG | - | chr1_4:10063744-10063763 | Msa0149350:intron | 35.0% | |
| !! | CTGATTTTGTTTGTACCTTG+AGG | + | chr1_4:10063924-10063943 | None:intergenic | 35.0% |
| !!! | CAAATCTTTTTTGGCCATGT+TGG | + | chr1_4:10064090-10064109 | None:intergenic | 35.0% |
| CAACATGGCCAAAAAAGATT+TGG | - | chr1_4:10064088-10064107 | Msa0149350:intron | 35.0% | |
| TCCTTCAAATGCAAGAGTAA+GGG | - | chr1_4:10064336-10064355 | Msa0149350:intron | 35.0% | |
| GAAGACGTTTACTCTTACTA+GGG | + | chr1_4:10064561-10064580 | None:intergenic | 35.0% | |
| AGAAGACGTTTACTCTTACT+AGG | + | chr1_4:10064562-10064581 | None:intergenic | 35.0% | |
| TGACACGTTATACACATACT+TGG | - | chr1_4:10064618-10064637 | Msa0149350:intron | 35.0% | |
| ACTCTTTCCTTGCATTCTAT+TGG | + | chr1_4:10064674-10064693 | None:intergenic | 35.0% | |
| TTCAATCAAATAGGCAAAGC+AGG | + | chr1_4:10064899-10064918 | None:intergenic | 35.0% | |
| ! | ATGTGTGTCGGTAAGATCAT+AGG | - | chr1_4:10061877-10061896 | Msa0149350:three_prime_UTR | 40.0% |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr1_4:10062380-10062399 | Msa0149350:CDS | 40.0% | |
| GCATACAATACACCAAATGG+TGG | - | chr1_4:10062409-10062428 | Msa0149350:CDS | 40.0% | |
| CAAATCAAAAAAGGGCAACC+CGG | + | chr1_4:10062476-10062495 | None:intergenic | 40.0% | |
| TTCCCCATGAATGAAAAAGG+TGG | + | chr1_4:10062629-10062648 | None:intergenic | 40.0% | |
| TCATAATTGGAAGCCATTCG+AGG | + | chr1_4:10062671-10062690 | None:intergenic | 40.0% | |
| AAGCTATCCCGAAAAGCTAA+TGG | - | chr1_4:10063291-10063310 | Msa0149350:intron | 40.0% | |
| AGCTTATGGACTTGCCAATA+AGG | - | chr1_4:10063330-10063349 | Msa0149350:intron | 40.0% | |
| CCTCATGATCCATAAAACCT+TGG | + | chr1_4:10063473-10063492 | None:intergenic | 40.0% | |
| !! | CCAAGGTTTTATGGATCATG+AGG | - | chr1_4:10063470-10063489 | Msa0149350:intron | 40.0% |
| GCCAATCATCTTCATCATCT+AGG | + | chr1_4:10063748-10063767 | None:intergenic | 40.0% | |
| AAGATGATTGGCATCACTTC+AGG | - | chr1_4:10063756-10063775 | Msa0149350:intron | 40.0% | |
| TGAGGTTGTAAAGAAGGTGA+TGG | + | chr1_4:10064038-10064057 | None:intergenic | 40.0% | |
| !! | ACTCTCTGAGGTTGTAAAGA+AGG | + | chr1_4:10064044-10064063 | None:intergenic | 40.0% |
| TCTTTACAACCTCAGAGAGT+TGG | - | chr1_4:10064044-10064063 | Msa0149350:CDS | 40.0% | |
| TTCATTCACTTCACCCAACA+TGG | - | chr1_4:10064073-10064092 | Msa0149350:intron | 40.0% | |
| GGATCTACTTGACAATGATC+CGG | + | chr1_4:10064257-10064276 | None:intergenic | 40.0% | |
| GTAGTTGATCTACCAGTCTT+TGG | + | chr1_4:10064286-10064305 | None:intergenic | 40.0% | |
| TCTTGCATTTGAAGGACTTG+TGG | + | chr1_4:10064332-10064351 | None:intergenic | 40.0% | |
| GTCCTTCAAATGCAAGAGTA+AGG | - | chr1_4:10064335-10064354 | Msa0149350:intron | 40.0% | |
| ACCCTTACTCTTGCATTTGA+AGG | + | chr1_4:10064340-10064359 | None:intergenic | 40.0% | |
| AATGCAAGAGTAAGGGTAAG+TGG | - | chr1_4:10064343-10064362 | Msa0149350:intron | 40.0% | |
| TCCTTTCTTGCAGTATCCTT+CGG | - | chr1_4:10064468-10064487 | Msa0149350:intron | 40.0% | |
| GTTTACTCTTACTAGGGTGT+TGG | + | chr1_4:10064555-10064574 | None:intergenic | 40.0% | |
| TTCTTAAGTCCCTACTTAGC+AGG | - | chr1_4:10064578-10064597 | Msa0149350:intron | 40.0% | |
| ACACTTGCCAATAGAATGCA+AGG | - | chr1_4:10064664-10064683 | Msa0149350:intron | 40.0% | |
| !! | CAAACACACCTTTGAAGTGT+CGG | + | chr1_4:10064751-10064770 | None:intergenic | 40.0% |
| TGATACGACATCAACACATG+TGG | - | chr1_4:10064782-10064801 | Msa0149350:intron | 40.0% | |
| ! | GTTTGATTTCTTGTCGGGCA+TGG | - | chr1_4:10061913-10061932 | Msa0149350:three_prime_UTR | 45.0% |
| ACAAAATGTGGCTGCAACTG+CGG | - | chr1_4:10062021-10062040 | Msa0149350:three_prime_UTR | 45.0% | |
| TTGTGATAGAGGGGTAACCT+TGG | - | chr1_4:10062344-10062363 | Msa0149350:CDS | 45.0% | |
| CAACTTTACAAGTTGCGCCA+AGG | + | chr1_4:10062364-10062383 | None:intergenic | 45.0% | |
| AACACAACCTCTACCTCGAA+TGG | - | chr1_4:10062655-10062674 | Msa0149350:CDS | 45.0% | |
| !! | TGTTGAGTTGGTACCATGCA+AGG | + | chr1_4:10063702-10063721 | None:intergenic | 45.0% |
| GATTGGCATCACTTCAGGAA+TGG | - | chr1_4:10063761-10063780 | Msa0149350:intron | 45.0% | |
| TTGTACCTTGAGGTAGACGT+TGG | + | chr1_4:10063914-10063933 | None:intergenic | 45.0% | |
| GAAAAAGCTCCAACTCTCTG+AGG | + | chr1_4:10064056-10064075 | None:intergenic | 45.0% | |
| AGATCCACAACACCAAAGAC+TGG | - | chr1_4:10064271-10064290 | Msa0149350:CDS | 45.0% | |
| !! | TCTACCAGTCTTTGGTGTTG+TGG | + | chr1_4:10064278-10064297 | None:intergenic | 45.0% |
| ! | GTGGATCTGTTGCTTGAGTT+TGG | + | chr1_4:10064310-10064329 | None:intergenic | 45.0% |
| TGCATTTGAAGGACTTGTGG+TGG | + | chr1_4:10064329-10064348 | None:intergenic | 45.0% | |
| TCCGAAGGATACTGCAAGAA+AGG | + | chr1_4:10064472-10064491 | None:intergenic | 45.0% | |
| !! | ATGAAGCACCGACACTTCAA+AGG | - | chr1_4:10064740-10064759 | Msa0149350:intron | 45.0% |
| ! | CGACACTTCAAAGGTGTGTT+TGG | - | chr1_4:10064749-10064768 | Msa0149350:intron | 45.0% |
| CATATGCAGGGTCCAGGAAA+GGG | + | chr1_4:10062437-10062456 | None:intergenic | 50.0% | |
| TTTCCTGGACCCTGCATATG+CGG | - | chr1_4:10062437-10062456 | Msa0149350:intron | 50.0% | |
| CTAAAGCTCCCGCATATGCA+GGG | + | chr1_4:10062449-10062468 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATATGC+AGG | + | chr1_4:10062450-10062469 | None:intergenic | 50.0% | |
| ! | ATGCGGGAGCTTTAGTACAC+CGG | - | chr1_4:10062454-10062473 | Msa0149350:intron | 50.0% |
| TTGGAAGCCATTCGAGGTAG+AGG | + | chr1_4:10062665-10062684 | None:intergenic | 50.0% | |
| AAACGCCAACGTCTACCTCA+AGG | - | chr1_4:10063906-10063925 | Msa0149350:intron | 50.0% | |
| AGGTTTCCACTTTCGCGTAC+CGG | - | chr1_4:10064235-10064254 | Msa0149350:CDS | 50.0% | |
| AATGATCCGGTACGCGAAAG+TGG | + | chr1_4:10064244-10064263 | None:intergenic | 50.0% | |
| !! | CGCATTGAAGCTGATTTGCG+CGG | + | chr1_4:10064496-10064515 | None:intergenic | 50.0% |
| AGACTTGCGCCTGCTAAGTA+GGG | + | chr1_4:10064590-10064609 | None:intergenic | 50.0% | |
| TAGACTTGCGCCTGCTAAGT+AGG | + | chr1_4:10064591-10064610 | None:intergenic | 50.0% | |
| TAGCAGGCGCAAGTCTAAGA+AGG | - | chr1_4:10064594-10064613 | Msa0149350:intron | 50.0% | |
| GTGGTCAGCAGCTGCACTTA+TGG | + | chr1_4:10062081-10062100 | None:intergenic | 55.0% | |
| CAGGAAAGGGTCCCACCATT+TGG | + | chr1_4:10062424-10062443 | None:intergenic | 55.0% | |
| ! | CAAATGGTGGGACCCTTTCC+TGG | - | chr1_4:10062422-10062441 | Msa0149350:intron | 55.0% |
| GCATATGCAGGGTCCAGGAA+AGG | + | chr1_4:10062438-10062457 | None:intergenic | 55.0% | |
| TTCCTGGACCCTGCATATGC+GGG | - | chr1_4:10062438-10062457 | Msa0149350:intron | 55.0% | |
| ! | TGCGGGAGCTTTAGTACACC+GGG | - | chr1_4:10062455-10062474 | Msa0149350:intron | 55.0% |
| TCAGTTGGGGAGACCTTGCA+TGG | - | chr1_4:10063686-10063705 | Msa0149350:intron | 55.0% | |
| CGCGAAAGTGGAAACCTGTG+TGG | + | chr1_4:10064232-10064251 | None:intergenic | 55.0% | |
| AGCGGACAGTTTCGCCACAC+AGG | - | chr1_4:10064215-10064234 | Msa0149350:CDS | 60.0% | |
| CTCCCGCATATGCAGGGTCC+AGG | + | chr1_4:10062443-10062462 | None:intergenic | 65.0% | |
| !! | GCTGATTTGCGCGGCTCCGA+AGG | + | chr1_4:10064487-10064506 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 10061842 | 10065073 | 10061842 | ID=Msa0149350;Name=Msa0149350 |
| chr1_4 | mRNA | 10061842 | 10065073 | 10061842 | ID=Msa0149350-mRNA-1;Parent=Msa0149350;Name=Msa0149350-mRNA-1;_AED=0.16;_eAED=0.16;_QI=270|1|1|1|0.88|0.8|10|422|336 |
| chr1_4 | exon | 10061842 | 10062434 | 10061842 | ID=Msa0149350-mRNA-1:exon:4282;Parent=Msa0149350-mRNA-1 |
| chr1_4 | exon | 10062558 | 10062703 | 10062558 | ID=Msa0149350-mRNA-1:exon:4281;Parent=Msa0149350-mRNA-1 |
| chr1_4 | exon | 10062805 | 10062893 | 10062805 | ID=Msa0149350-mRNA-1:exon:4280;Parent=Msa0149350-mRNA-1 |
| chr1_4 | exon | 10062988 | 10063030 | 10062988 | ID=Msa0149350-mRNA-1:exon:4279;Parent=Msa0149350-mRNA-1 |
| chr1_4 | exon | 10063133 | 10063225 | 10063133 | ID=Msa0149350-mRNA-1:exon:4278;Parent=Msa0149350-mRNA-1 |
| chr1_4 | exon | 10063360 | 10063459 | 10063360 | ID=Msa0149350-mRNA-1:exon:4277;Parent=Msa0149350-mRNA-1 |
| chr1_4 | exon | 10063773 | 10063923 | 10063773 | ID=Msa0149350-mRNA-1:exon:4276;Parent=Msa0149350-mRNA-1 |
| chr1_4 | exon | 10064004 | 10064086 | 10064004 | ID=Msa0149350-mRNA-1:exon:4275;Parent=Msa0149350-mRNA-1 |
| chr1_4 | exon | 10064179 | 10064309 | 10064179 | ID=Msa0149350-mRNA-1:exon:4274;Parent=Msa0149350-mRNA-1 |
| chr1_4 | exon | 10064800 | 10065073 | 10064800 | ID=Msa0149350-mRNA-1:exon:4273;Parent=Msa0149350-mRNA-1 |
| chr1_4 | five_prime_UTR | 10064804 | 10065073 | 10064804 | ID=Msa0149350-mRNA-1:five_prime_utr;Parent=Msa0149350-mRNA-1 |
| chr1_4 | CDS | 10064800 | 10064803 | 10064800 | ID=Msa0149350-mRNA-1:cds;Parent=Msa0149350-mRNA-1 |
| chr1_4 | CDS | 10064179 | 10064309 | 10064179 | ID=Msa0149350-mRNA-1:cds;Parent=Msa0149350-mRNA-1 |
| chr1_4 | CDS | 10064004 | 10064086 | 10064004 | ID=Msa0149350-mRNA-1:cds;Parent=Msa0149350-mRNA-1 |
| chr1_4 | CDS | 10063773 | 10063923 | 10063773 | ID=Msa0149350-mRNA-1:cds;Parent=Msa0149350-mRNA-1 |
| chr1_4 | CDS | 10063360 | 10063459 | 10063360 | ID=Msa0149350-mRNA-1:cds;Parent=Msa0149350-mRNA-1 |
| chr1_4 | CDS | 10063133 | 10063225 | 10063133 | ID=Msa0149350-mRNA-1:cds;Parent=Msa0149350-mRNA-1 |
| chr1_4 | CDS | 10062988 | 10063030 | 10062988 | ID=Msa0149350-mRNA-1:cds;Parent=Msa0149350-mRNA-1 |
| chr1_4 | CDS | 10062805 | 10062893 | 10062805 | ID=Msa0149350-mRNA-1:cds;Parent=Msa0149350-mRNA-1 |
| chr1_4 | CDS | 10062558 | 10062703 | 10062558 | ID=Msa0149350-mRNA-1:cds;Parent=Msa0149350-mRNA-1 |
| chr1_4 | CDS | 10062264 | 10062434 | 10062264 | ID=Msa0149350-mRNA-1:cds;Parent=Msa0149350-mRNA-1 |
| chr1_4 | three_prime_UTR | 10061842 | 10062263 | 10061842 | ID=Msa0149350-mRNA-1:three_prime_utr;Parent=Msa0149350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
