Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798890 | XP_003611946.1 | 90.090 | 222 | 14 | 2 | 1 | 215 | 1 | 221 | 3.48e-130 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798890 | sp|O23208|ATB40_ARATH | 53.774 | 212 | 90 | 7 | 7 | 215 | 10 | 216 | 1.34e-61 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798890 | G7KC72 | 90.090 | 222 | 14 | 2 | 1 | 215 | 1 | 221 | 1.66e-130 | 375 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0798890 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0798890 | Msa0798900 | 0.916027 | 2.916391e-85 | -8.615850e-47 |
| Msa0798890 | Msa1415040 | 0.887190 | 1.774013e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798890 | MtrunA17_Chr5g0403691 | 90.090 | 222 | 14 | 2 | 1 | 215 | 1 | 221 | 3.20e-134 | 375 |
| Msa0798890 | MtrunA17_Chr5g0403701 | 82.160 | 213 | 32 | 2 | 1 | 213 | 1 | 207 | 9.16e-115 | 326 |
| Msa0798890 | MtrunA17_Chr4g0060031 | 43.200 | 125 | 61 | 2 | 41 | 155 | 79 | 203 | 1.27e-23 | 96.3 |
| Msa0798890 | MtrunA17_Chr6g0450991 | 48.214 | 112 | 47 | 3 | 54 | 157 | 67 | 175 | 4.55e-22 | 91.3 |
| Msa0798890 | MtrunA17_Chr3g0123691 | 60.811 | 74 | 29 | 0 | 54 | 127 | 60 | 133 | 9.50e-22 | 90.9 |
| Msa0798890 | MtrunA17_Chr7g0265521 | 35.465 | 172 | 93 | 3 | 48 | 205 | 57 | 224 | 9.91e-22 | 89.4 |
| Msa0798890 | MtrunA17_Chr8g0381741 | 52.475 | 101 | 39 | 1 | 54 | 145 | 54 | 154 | 2.39e-21 | 89.7 |
| Msa0798890 | MtrunA17_Chr6g0453021 | 50.495 | 101 | 50 | 0 | 43 | 143 | 85 | 185 | 7.75e-21 | 87.8 |
| Msa0798890 | MtrunA17_Chr8g0362151 | 42.609 | 115 | 61 | 1 | 46 | 160 | 69 | 178 | 3.05e-20 | 86.3 |
| Msa0798890 | MtrunA17_Chr8g0362751 | 48.598 | 107 | 48 | 2 | 54 | 153 | 89 | 195 | 4.13e-20 | 85.9 |
| Msa0798890 | MtrunA17_Chr1g0179581 | 51.807 | 83 | 40 | 0 | 54 | 136 | 28 | 110 | 6.78e-20 | 81.3 |
| Msa0798890 | MtrunA17_Chr5g0416391 | 43.478 | 115 | 60 | 1 | 46 | 160 | 69 | 178 | 7.09e-20 | 85.5 |
| Msa0798890 | MtrunA17_Chr5g0415941 | 59.155 | 71 | 29 | 0 | 54 | 124 | 87 | 157 | 1.27e-19 | 85.1 |
| Msa0798890 | MtrunA17_Chr3g0127511 | 39.716 | 141 | 68 | 3 | 56 | 196 | 40 | 163 | 4.57e-19 | 82.4 |
| Msa0798890 | MtrunA17_Chr3g0119291 | 47.368 | 95 | 50 | 0 | 51 | 145 | 56 | 150 | 1.07e-17 | 79.0 |
| Msa0798890 | MtrunA17_Chr8g0346251 | 44.860 | 107 | 56 | 1 | 58 | 164 | 45 | 148 | 1.15e-17 | 79.0 |
| Msa0798890 | MtrunA17_Chr7g0217111 | 47.778 | 90 | 47 | 0 | 54 | 143 | 80 | 169 | 1.48e-15 | 73.6 |
| Msa0798890 | MtrunA17_Chr2g0308611 | 35.616 | 146 | 88 | 2 | 34 | 173 | 180 | 325 | 3.39e-14 | 70.1 |
| Msa0798890 | MtrunA17_Chr4g0055851 | 42.727 | 110 | 57 | 2 | 39 | 143 | 106 | 214 | 3.86e-14 | 69.7 |
| Msa0798890 | MtrunA17_Chr8g0335131 | 45.263 | 95 | 47 | 1 | 54 | 143 | 146 | 240 | 1.22e-13 | 68.6 |
| Msa0798890 | MtrunA17_Chr4g0044091 | 53.731 | 67 | 31 | 0 | 54 | 120 | 65 | 131 | 2.21e-13 | 66.2 |
| Msa0798890 | MtrunA17_Chr4g0054421 | 45.263 | 95 | 47 | 1 | 54 | 143 | 127 | 221 | 3.27e-13 | 67.0 |
| Msa0798890 | MtrunA17_Chr1g0175651 | 38.053 | 113 | 65 | 1 | 34 | 141 | 134 | 246 | 2.60e-12 | 64.7 |
| Msa0798890 | MtrunA17_Chr5g0400781 | 45.263 | 95 | 47 | 1 | 54 | 143 | 123 | 217 | 3.56e-12 | 63.9 |
| Msa0798890 | MtrunA17_Chr7g0258831 | 37.500 | 112 | 65 | 1 | 35 | 141 | 141 | 252 | 5.14e-12 | 63.5 |
| Msa0798890 | MtrunA17_Chr5g0399491 | 43.158 | 95 | 49 | 1 | 54 | 143 | 136 | 230 | 6.36e-12 | 63.5 |
| Msa0798890 | MtrunA17_Chr1g0151971 | 45.349 | 86 | 47 | 0 | 54 | 139 | 130 | 215 | 8.92e-12 | 63.2 |
| Msa0798890 | MtrunA17_Chr3g0135331 | 43.836 | 73 | 41 | 0 | 52 | 124 | 143 | 215 | 3.04e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798890 | AT4G36740.2 | 53.302 | 212 | 92 | 6 | 7 | 215 | 10 | 217 | 5.16e-63 | 195 |
| Msa0798890 | AT4G36740.1 | 53.774 | 212 | 90 | 7 | 7 | 215 | 10 | 216 | 1.36e-62 | 194 |
| Msa0798890 | AT2G18550.1 | 47.788 | 226 | 101 | 8 | 1 | 215 | 1 | 220 | 1.90e-62 | 194 |
| Msa0798890 | AT5G66700.1 | 45.333 | 225 | 104 | 7 | 5 | 215 | 9 | 228 | 1.37e-44 | 149 |
| Msa0798890 | AT3G01470.1 | 49.505 | 101 | 44 | 1 | 50 | 143 | 64 | 164 | 1.13e-23 | 95.9 |
| Msa0798890 | AT1G69780.1 | 38.816 | 152 | 83 | 3 | 2 | 143 | 23 | 174 | 1.22e-22 | 93.2 |
| Msa0798890 | AT4G40060.1 | 57.317 | 82 | 35 | 0 | 43 | 124 | 48 | 129 | 9.52e-22 | 90.9 |
| Msa0798890 | AT2G22430.1 | 64.789 | 71 | 25 | 0 | 54 | 124 | 62 | 132 | 1.68e-21 | 90.5 |
| Msa0798890 | AT1G26960.1 | 44.355 | 124 | 64 | 1 | 54 | 177 | 71 | 189 | 1.88e-21 | 89.4 |
| Msa0798890 | AT5G03790.1 | 50.000 | 94 | 46 | 1 | 46 | 139 | 70 | 162 | 7.30e-21 | 87.4 |
| Msa0798890 | AT5G65310.2 | 65.152 | 66 | 23 | 0 | 54 | 119 | 54 | 119 | 1.29e-20 | 87.8 |
| Msa0798890 | AT5G65310.1 | 58.108 | 74 | 31 | 0 | 46 | 119 | 64 | 137 | 1.36e-20 | 88.2 |
| Msa0798890 | AT5G03790.2 | 48.936 | 94 | 47 | 1 | 46 | 139 | 70 | 162 | 1.93e-20 | 85.5 |
| Msa0798890 | AT2G46680.1 | 41.732 | 127 | 67 | 1 | 48 | 174 | 26 | 145 | 2.96e-20 | 86.3 |
| Msa0798890 | AT2G46680.2 | 47.748 | 111 | 51 | 1 | 48 | 151 | 26 | 136 | 1.14e-19 | 84.7 |
| Msa0798890 | AT2G36610.1 | 46.296 | 108 | 50 | 2 | 46 | 145 | 63 | 170 | 1.72e-19 | 82.8 |
| Msa0798890 | AT3G01220.1 | 50.000 | 86 | 43 | 0 | 39 | 124 | 72 | 157 | 1.09e-18 | 82.4 |
| Msa0798890 | AT5G53980.1 | 44.444 | 99 | 55 | 0 | 45 | 143 | 2 | 100 | 1.65e-18 | 79.3 |
| Msa0798890 | AT5G15150.1 | 53.750 | 80 | 37 | 0 | 41 | 120 | 102 | 181 | 2.04e-18 | 82.0 |
| Msa0798890 | AT3G61890.1 | 41.176 | 119 | 64 | 1 | 57 | 169 | 33 | 151 | 1.07e-17 | 79.0 |
| Msa0798890 | AT1G27045.1 | 42.735 | 117 | 54 | 2 | 52 | 155 | 66 | 182 | 6.06e-17 | 76.6 |
| Msa0798890 | AT1G27045.2 | 36.054 | 147 | 79 | 2 | 52 | 191 | 15 | 153 | 6.90e-17 | 75.5 |
| Msa0798890 | AT1G27045.5 | 36.054 | 147 | 79 | 2 | 52 | 191 | 23 | 161 | 8.05e-17 | 75.5 |
| Msa0798890 | AT1G27045.3 | 36.054 | 147 | 79 | 2 | 52 | 191 | 23 | 161 | 8.05e-17 | 75.5 |
| Msa0798890 | AT1G27045.4 | 57.353 | 68 | 29 | 0 | 52 | 119 | 66 | 133 | 1.88e-16 | 75.9 |
| Msa0798890 | AT2G22800.1 | 45.161 | 93 | 46 | 1 | 54 | 141 | 113 | 205 | 1.94e-13 | 67.8 |
| Msa0798890 | AT4G16780.1 | 40.741 | 108 | 54 | 2 | 41 | 143 | 121 | 223 | 6.80e-13 | 66.6 |
| Msa0798890 | AT4G37790.1 | 44.086 | 93 | 47 | 1 | 54 | 141 | 126 | 218 | 1.78e-12 | 65.1 |
| Msa0798890 | AT4G17460.1 | 40.385 | 104 | 57 | 1 | 45 | 143 | 126 | 229 | 3.48e-12 | 64.3 |
| Msa0798890 | AT2G01430.1 | 37.008 | 127 | 65 | 2 | 54 | 179 | 139 | 251 | 3.93e-12 | 64.3 |
| Msa0798890 | AT5G47370.1 | 37.931 | 116 | 67 | 1 | 33 | 143 | 109 | 224 | 1.08e-11 | 63.2 |
| Msa0798890 | AT5G06710.1 | 39.048 | 105 | 64 | 0 | 35 | 139 | 171 | 275 | 1.90e-11 | 62.8 |
| Msa0798890 | AT3G60390.1 | 40.000 | 105 | 58 | 1 | 44 | 143 | 152 | 256 | 2.61e-11 | 62.4 |
Find 47 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGTTGAGGAATTATT+TGG | 0.121044 | 5_3:-11882763 | None:intergenic |
| CTTCTATATGTATTTATAAT+AGG | 0.161447 | 5_3:-11882569 | None:intergenic |
| TCCACCTAGCTCTTCGATTC+TGG | 0.214518 | 5_3:-11883088 | None:intergenic |
| TGATGAACAGATGAAAATTT+TGG | 0.274813 | 5_3:+11882968 | Msa0798890:CDS |
| TTCTATATGTATTTATAATA+GGG | 0.309158 | 5_3:-11882568 | None:intergenic |
| TAAGCATCATTTGGTCTTGA+TGG | 0.320716 | 5_3:-11882709 | None:intergenic |
| TACTCATCATTCTATTAATT+AGG | 0.321798 | 5_3:+11882632 | Msa0798890:five_prime_UTR |
| GAACCATACTGCAACTTGTC+TGG | 0.324204 | 5_3:-11883066 | None:intergenic |
| CTACGCTTGCGTCTTGGCTT+TGG | 0.328958 | 5_3:-11882882 | None:intergenic |
| TTGTAGTAACATGTTTCATT+AGG | 0.345702 | 5_3:-11884233 | None:intergenic |
| CTGCATGTTACCCTTTCAAT+TGG | 0.385057 | 5_3:-11884104 | None:intergenic |
| ATCCCAGACAAGTTGCAGTA+TGG | 0.391231 | 5_3:+11883063 | Msa0798890:CDS |
| TTCTTACTACGCTTGCGTCT+TGG | 0.426044 | 5_3:-11882888 | None:intergenic |
| ACCTTGTTGAGGAATTATTT+GGG | 0.434434 | 5_3:-11882762 | None:intergenic |
| AGAGGTATACCTTGGTTTCA+AGG | 0.439510 | 5_3:-11883184 | None:intergenic |
| ACTGAGACATAAGCATCATT+TGG | 0.463969 | 5_3:-11882718 | None:intergenic |
| CGTAGTAAGAAGAACAAAAG+TGG | 0.482800 | 5_3:+11882900 | Msa0798890:CDS |
| GATAGGCTTGCAATGGAGCT+TGG | 0.487004 | 5_3:+11883035 | Msa0798890:CDS |
| AAGGAGATACTTCTCAAGAA+TGG | 0.497377 | 5_3:-11883165 | None:intergenic |
| TAAACTTGAGTCAGAGAAGA+AGG | 0.499532 | 5_3:+11883013 | Msa0798890:CDS |
| GTCTCAGTCAGTGGAAGTTG+TGG | 0.499926 | 5_3:+11884148 | Msa0798890:CDS |
| GGTGAATTTGGTGTTGATAA+CGG | 0.514478 | 5_3:+11884185 | Msa0798890:CDS |
| ACACCAAATTCACCAAGAAA+AGG | 0.517876 | 5_3:-11884176 | None:intergenic |
| AACCATACTGCAACTTGTCT+GGG | 0.517968 | 5_3:-11883065 | None:intergenic |
| TTGAGTCAGAGAAGAAGGAT+AGG | 0.537241 | 5_3:+11883018 | Msa0798890:CDS |
| ATTTGGGTGTATTCACAAGC+GGG | 0.547719 | 5_3:-11882746 | None:intergenic |
| GCTTCGAGAGCCAATTGAAA+GGG | 0.560533 | 5_3:+11884094 | Msa0798890:CDS |
| CCAAATTCACCAAGAAAAGG+TGG | 0.566129 | 5_3:-11884173 | None:intergenic |
| GTTACTACAATGGCATGGAA+TGG | 0.566673 | 5_3:+11884246 | Msa0798890:CDS |
| TCTATATGTATTTATAATAG+GGG | 0.566682 | 5_3:-11882567 | None:intergenic |
| GGCTTCGAGAGCCAATTGAA+AGG | 0.569118 | 5_3:+11884093 | Msa0798890:CDS |
| AATCTGAGAAAGAAAATCAA+AGG | 0.580369 | 5_3:+11884072 | Msa0798890:CDS |
| AACTTCCACTGACTGAGACA+TGG | 0.581765 | 5_3:-11884144 | None:intergenic |
| TTCATCCATGTCTCAGTCAG+TGG | 0.582296 | 5_3:+11884139 | Msa0798890:CDS |
| GAAGAAGGATAGGCTTGCAA+TGG | 0.584642 | 5_3:+11883028 | Msa0798890:CDS |
| AATGAAACATGTTACTACAA+TGG | 0.596613 | 5_3:+11884236 | Msa0798890:CDS |
| TGTATAGGTGTTGAAGCTAA+CGG | 0.597602 | 5_3:+11884037 | Msa0798890:intron |
| GGTTCCAGAATCGAAGAGCT+AGG | 0.598892 | 5_3:+11883084 | Msa0798890:CDS |
| TATTTGGGTGTATTCACAAG+CGG | 0.604533 | 5_3:-11882747 | None:intergenic |
| ACTTGATACTAACCTTGTTG+AGG | 0.606044 | 5_3:-11882773 | None:intergenic |
| GAGATACTTCTCAAGAATGG+TGG | 0.612212 | 5_3:-11883162 | None:intergenic |
| AACATGTTACTACAATGGCA+TGG | 0.616964 | 5_3:+11884241 | Msa0798890:CDS |
| GAAGTATCTCCTTGAAACCA+AGG | 0.625666 | 5_3:+11883175 | Msa0798890:CDS |
| CAAATTCACCAAGAAAAGGT+GGG | 0.668413 | 5_3:-11884172 | None:intergenic |
| TTTGGGTGTATTCACAAGCG+GGG | 0.669434 | 5_3:-11882745 | None:intergenic |
| ACCCAAATAATTCCTCAACA+AGG | 0.682907 | 5_3:+11882761 | Msa0798890:CDS |
| TCCAGAATCGAAGAGCTAGG+TGG | 0.707809 | 5_3:+11883087 | Msa0798890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATATGTATTTATAATA+GGG | - | chr5_3:11882571-11882590 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTTAAAATCAG+TGG | + | chr5_3:11883290-11883309 | Msa0798890:intron | 10.0% |
| !! | TTCAAAAAATATAATATTGT+TGG | - | chr5_3:11883365-11883384 | None:intergenic | 10.0% |
| !! | TAAACAAAGTAATTAAATAA+AGG | - | chr5_3:11883555-11883574 | None:intergenic | 10.0% |
| !! | TTCTATATGTATTTATAATA+GGG | - | chr5_3:11882571-11882590 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTTAAAATCAG+TGG | + | chr5_3:11883290-11883309 | Msa0798890:intron | 10.0% |
| !! | TTCAAAAAATATAATATTGT+TGG | - | chr5_3:11883365-11883384 | None:intergenic | 10.0% |
| !! | TAAACAAAGTAATTAAATAA+AGG | - | chr5_3:11883555-11883574 | None:intergenic | 10.0% |
| !! | TCTATATGTATTTATAATAG+GGG | - | chr5_3:11882570-11882589 | None:intergenic | 15.0% |
| !! | CTTCTATATGTATTTATAAT+AGG | - | chr5_3:11882572-11882591 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTATGTTTTTTT+AGG | + | chr5_3:11882849-11882868 | Msa0798890:intron | 15.0% |
| !!! | TTTTTTGGTATGTTTTTTTA+GGG | + | chr5_3:11882850-11882869 | Msa0798890:intron | 15.0% |
| !! | AAAAAAAAATGCATAAAAAG+AGG | - | chr5_3:11883215-11883234 | None:intergenic | 15.0% |
| !! | CTATAGTAATATAATATTGT+TGG | - | chr5_3:11883393-11883412 | None:intergenic | 15.0% |
| !!! | ACTTTATCATTTTTCATTAA+GGG | - | chr5_3:11883676-11883695 | None:intergenic | 15.0% |
| !!! | TACTTTATCATTTTTCATTA+AGG | - | chr5_3:11883677-11883696 | None:intergenic | 15.0% |
| !!! | AACCAATTAAATTTGTTATT+TGG | + | chr5_3:11883912-11883931 | Msa0798890:intron | 15.0% |
| !! | TCTATATGTATTTATAATAG+GGG | - | chr5_3:11882570-11882589 | None:intergenic | 15.0% |
| !! | CTTCTATATGTATTTATAAT+AGG | - | chr5_3:11882572-11882591 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTATGTTTTTTT+AGG | + | chr5_3:11882849-11882868 | Msa0798890:intron | 15.0% |
| !!! | TTTTTTGGTATGTTTTTTTA+GGG | + | chr5_3:11882850-11882869 | Msa0798890:intron | 15.0% |
| !! | AAAAAAAAATGCATAAAAAG+AGG | - | chr5_3:11883215-11883234 | None:intergenic | 15.0% |
| !! | CTATAGTAATATAATATTGT+TGG | - | chr5_3:11883393-11883412 | None:intergenic | 15.0% |
| !!! | ACTTTATCATTTTTCATTAA+GGG | - | chr5_3:11883676-11883695 | None:intergenic | 15.0% |
| !!! | TACTTTATCATTTTTCATTA+AGG | - | chr5_3:11883677-11883696 | None:intergenic | 15.0% |
| !!! | AACCAATTAAATTTGTTATT+TGG | + | chr5_3:11883912-11883931 | Msa0798890:intron | 15.0% |
| !! | TACTCATCATTCTATTAATT+AGG | + | chr5_3:11882632-11882651 | Msa0798890:five_prime_UTR | 20.0% |
| !!! | TTTTTGGTATGTTTTTTTAG+GGG | + | chr5_3:11882851-11882870 | Msa0798890:intron | 20.0% |
| !!! | AAAATTTTGGAGGAAAATTT+TGG | + | chr5_3:11882981-11883000 | Msa0798890:CDS | 20.0% |
| !!! | AAAATTTAAAATCAGTGGAT+TGG | + | chr5_3:11883295-11883314 | Msa0798890:intron | 20.0% |
| !!! | CTTTATCATTTTTCATTAAG+GGG | - | chr5_3:11883675-11883694 | None:intergenic | 20.0% |
| !!! | CAATTAAATTTGTTATTTGG+CGG | + | chr5_3:11883915-11883934 | Msa0798890:intron | 20.0% |
| !! | TACTCATCATTCTATTAATT+AGG | + | chr5_3:11882632-11882651 | Msa0798890:five_prime_UTR | 20.0% |
| !!! | TTTTTGGTATGTTTTTTTAG+GGG | + | chr5_3:11882851-11882870 | Msa0798890:intron | 20.0% |
| !!! | AAAATTTTGGAGGAAAATTT+TGG | + | chr5_3:11882981-11883000 | Msa0798890:CDS | 20.0% |
| !!! | AAAATTTAAAATCAGTGGAT+TGG | + | chr5_3:11883295-11883314 | Msa0798890:intron | 20.0% |
| !!! | CTTTATCATTTTTCATTAAG+GGG | - | chr5_3:11883675-11883694 | None:intergenic | 20.0% |
| !!! | CAATTAAATTTGTTATTTGG+CGG | + | chr5_3:11883915-11883934 | Msa0798890:intron | 20.0% |
| !!! | AGATTGATTGAGATGTTTTT+TGG | - | chr5_3:11882609-11882628 | None:intergenic | 25.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | + | chr5_3:11882937-11882956 | Msa0798890:CDS | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | - | chr5_3:11882941-11882960 | None:intergenic | 25.0% |
| !! | TGATGAACAGATGAAAATTT+TGG | + | chr5_3:11882968-11882987 | Msa0798890:CDS | 25.0% |
| ! | TTCTCTCTTTCAACATTTAA+GGG | - | chr5_3:11883602-11883621 | None:intergenic | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+AGG | - | chr5_3:11883603-11883622 | None:intergenic | 25.0% |
| ! | CGCCAAATAACAAATTTAAT+TGG | - | chr5_3:11883917-11883936 | None:intergenic | 25.0% |
| ! | GTTCCATTAATTGTTTGTAT+AGG | + | chr5_3:11884022-11884041 | Msa0798890:intron | 25.0% |
| ! | ACACCTATACAAACAATTAA+TGG | - | chr5_3:11884028-11884047 | None:intergenic | 25.0% |
| ! | AATCTGAGAAAGAAAATCAA+AGG | + | chr5_3:11884072-11884091 | Msa0798890:CDS | 25.0% |
| ! | TTGTAGTAACATGTTTCATT+AGG | - | chr5_3:11884236-11884255 | None:intergenic | 25.0% |
| ! | AATGAAACATGTTACTACAA+TGG | + | chr5_3:11884236-11884255 | Msa0798890:CDS | 25.0% |
| !!! | AGATTGATTGAGATGTTTTT+TGG | - | chr5_3:11882609-11882628 | None:intergenic | 25.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | + | chr5_3:11882937-11882956 | Msa0798890:CDS | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | - | chr5_3:11882941-11882960 | None:intergenic | 25.0% |
| !! | TGATGAACAGATGAAAATTT+TGG | + | chr5_3:11882968-11882987 | Msa0798890:CDS | 25.0% |
| ! | TTCTCTCTTTCAACATTTAA+GGG | - | chr5_3:11883602-11883621 | None:intergenic | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+AGG | - | chr5_3:11883603-11883622 | None:intergenic | 25.0% |
| ! | CGCCAAATAACAAATTTAAT+TGG | - | chr5_3:11883917-11883936 | None:intergenic | 25.0% |
| ! | GTTCCATTAATTGTTTGTAT+AGG | + | chr5_3:11884022-11884041 | Msa0798890:intron | 25.0% |
| ! | ACACCTATACAAACAATTAA+TGG | - | chr5_3:11884028-11884047 | None:intergenic | 25.0% |
| ! | AATCTGAGAAAGAAAATCAA+AGG | + | chr5_3:11884072-11884091 | Msa0798890:CDS | 25.0% |
| ! | TTGTAGTAACATGTTTCATT+AGG | - | chr5_3:11884236-11884255 | None:intergenic | 25.0% |
| ! | AATGAAACATGTTACTACAA+TGG | + | chr5_3:11884236-11884255 | Msa0798890:CDS | 25.0% |
| ACCTTGTTGAGGAATTATTT+GGG | - | chr5_3:11882765-11882784 | None:intergenic | 30.0% | |
| AACCTTGTTGAGGAATTATT+TGG | - | chr5_3:11882766-11882785 | None:intergenic | 30.0% | |
| ! | TGAACAGATGAAAATTTTGG+AGG | + | chr5_3:11882971-11882990 | Msa0798890:CDS | 30.0% |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_3:11883440-11883459 | Msa0798890:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_3:11883441-11883460 | Msa0798890:intron | 30.0% | |
| !! | TGAGAACTTGATAATGTGAA+CGG | - | chr5_3:11883715-11883734 | None:intergenic | 30.0% |
| ! | TGGAAATATGGTCACATTTT+TGG | - | chr5_3:11883835-11883854 | None:intergenic | 30.0% |
| TAGATAAATAGCAATGCTCA+TGG | - | chr5_3:11883855-11883874 | None:intergenic | 30.0% | |
| ACCTTGTTGAGGAATTATTT+GGG | - | chr5_3:11882765-11882784 | None:intergenic | 30.0% | |
| AACCTTGTTGAGGAATTATT+TGG | - | chr5_3:11882766-11882785 | None:intergenic | 30.0% | |
| ! | TGAACAGATGAAAATTTTGG+AGG | + | chr5_3:11882971-11882990 | Msa0798890:CDS | 30.0% |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_3:11883440-11883459 | Msa0798890:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_3:11883441-11883460 | Msa0798890:intron | 30.0% | |
| !! | TGAGAACTTGATAATGTGAA+CGG | - | chr5_3:11883715-11883734 | None:intergenic | 30.0% |
| ! | TGGAAATATGGTCACATTTT+TGG | - | chr5_3:11883835-11883854 | None:intergenic | 30.0% |
| TAGATAAATAGCAATGCTCA+TGG | - | chr5_3:11883855-11883874 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGGAGACAACGTTA+AGG | - | chr5_3:11882595-11882614 | None:intergenic | 35.0% |
| !! | TAAGCATCATTTGGTCTTGA+TGG | - | chr5_3:11882712-11882731 | None:intergenic | 35.0% |
| ACTGAGACATAAGCATCATT+TGG | - | chr5_3:11882721-11882740 | None:intergenic | 35.0% | |
| TATTTGGGTGTATTCACAAG+CGG | - | chr5_3:11882750-11882769 | None:intergenic | 35.0% | |
| ACCCAAATAATTCCTCAACA+AGG | + | chr5_3:11882761-11882780 | Msa0798890:CDS | 35.0% | |
| ACTTGATACTAACCTTGTTG+AGG | - | chr5_3:11882776-11882795 | None:intergenic | 35.0% | |
| CGTAGTAAGAAGAACAAAAG+TGG | + | chr5_3:11882900-11882919 | Msa0798890:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_3:11883013-11883032 | Msa0798890:CDS | 35.0% | |
| AAGGAGATACTTCTCAAGAA+TGG | - | chr5_3:11883168-11883187 | None:intergenic | 35.0% | |
| GCATAAAAAGAGGAAGAAAG+AGG | - | chr5_3:11883205-11883224 | None:intergenic | 35.0% | |
| TTGAAAGAGAGAATAAGCAC+TGG | + | chr5_3:11883609-11883628 | Msa0798890:intron | 35.0% | |
| ACATGAAATGAAACATCGTG+TGG | - | chr5_3:11883746-11883765 | None:intergenic | 35.0% | |
| ACACGATGTTTCATTTCATG+TGG | + | chr5_3:11883745-11883764 | Msa0798890:intron | 35.0% | |
| TAGCAATGCTCATGGAAATA+TGG | - | chr5_3:11883847-11883866 | None:intergenic | 35.0% | |
| !! | TTGTTATTTGGCGGAAATCA+AGG | + | chr5_3:11883924-11883943 | Msa0798890:intron | 35.0% |
| ! | TGTTATTTGGCGGAAATCAA+GGG | + | chr5_3:11883925-11883944 | Msa0798890:intron | 35.0% |
| !! | TGTATAGGTGTTGAAGCTAA+CGG | + | chr5_3:11884037-11884056 | Msa0798890:intron | 35.0% |
| CAAATTCACCAAGAAAAGGT+GGG | - | chr5_3:11884175-11884194 | None:intergenic | 35.0% | |
| ACACCAAATTCACCAAGAAA+AGG | - | chr5_3:11884179-11884198 | None:intergenic | 35.0% | |
| !! | GGTGAATTTGGTGTTGATAA+CGG | + | chr5_3:11884185-11884204 | Msa0798890:CDS | 35.0% |
| AACATGTTACTACAATGGCA+TGG | + | chr5_3:11884241-11884260 | Msa0798890:CDS | 35.0% | |
| ! | TATAATAGGGGTGAAGTGTT+GGG | - | chr5_3:11882558-11882577 | None:intergenic | 35.0% |
| TTATAATAGGGGTGAAGTGT+TGG | - | chr5_3:11882559-11882578 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGAGACAACGTTA+AGG | - | chr5_3:11882595-11882614 | None:intergenic | 35.0% |
| !! | TAAGCATCATTTGGTCTTGA+TGG | - | chr5_3:11882712-11882731 | None:intergenic | 35.0% |
| ACTGAGACATAAGCATCATT+TGG | - | chr5_3:11882721-11882740 | None:intergenic | 35.0% | |
| TATTTGGGTGTATTCACAAG+CGG | - | chr5_3:11882750-11882769 | None:intergenic | 35.0% | |
| ACCCAAATAATTCCTCAACA+AGG | + | chr5_3:11882761-11882780 | Msa0798890:CDS | 35.0% | |
| ACTTGATACTAACCTTGTTG+AGG | - | chr5_3:11882776-11882795 | None:intergenic | 35.0% | |
| CGTAGTAAGAAGAACAAAAG+TGG | + | chr5_3:11882900-11882919 | Msa0798890:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_3:11883013-11883032 | Msa0798890:CDS | 35.0% | |
| AAGGAGATACTTCTCAAGAA+TGG | - | chr5_3:11883168-11883187 | None:intergenic | 35.0% | |
| GCATAAAAAGAGGAAGAAAG+AGG | - | chr5_3:11883205-11883224 | None:intergenic | 35.0% | |
| TTGAAAGAGAGAATAAGCAC+TGG | + | chr5_3:11883609-11883628 | Msa0798890:intron | 35.0% | |
| ACATGAAATGAAACATCGTG+TGG | - | chr5_3:11883746-11883765 | None:intergenic | 35.0% | |
| ACACGATGTTTCATTTCATG+TGG | + | chr5_3:11883745-11883764 | Msa0798890:intron | 35.0% | |
| TAGCAATGCTCATGGAAATA+TGG | - | chr5_3:11883847-11883866 | None:intergenic | 35.0% | |
| !! | TTGTTATTTGGCGGAAATCA+AGG | + | chr5_3:11883924-11883943 | Msa0798890:intron | 35.0% |
| ! | TGTTATTTGGCGGAAATCAA+GGG | + | chr5_3:11883925-11883944 | Msa0798890:intron | 35.0% |
| !! | TGTATAGGTGTTGAAGCTAA+CGG | + | chr5_3:11884037-11884056 | Msa0798890:intron | 35.0% |
| CAAATTCACCAAGAAAAGGT+GGG | - | chr5_3:11884175-11884194 | None:intergenic | 35.0% | |
| ACACCAAATTCACCAAGAAA+AGG | - | chr5_3:11884179-11884198 | None:intergenic | 35.0% | |
| !! | GGTGAATTTGGTGTTGATAA+CGG | + | chr5_3:11884185-11884204 | Msa0798890:CDS | 35.0% |
| AACATGTTACTACAATGGCA+TGG | + | chr5_3:11884241-11884260 | Msa0798890:CDS | 35.0% | |
| ATTTGGGTGTATTCACAAGC+GGG | - | chr5_3:11882749-11882768 | None:intergenic | 40.0% | |
| TTGAGTCAGAGAAGAAGGAT+AGG | + | chr5_3:11883018-11883037 | Msa0798890:CDS | 40.0% | |
| AACCATACTGCAACTTGTCT+GGG | - | chr5_3:11883068-11883087 | None:intergenic | 40.0% | |
| GAGATACTTCTCAAGAATGG+TGG | - | chr5_3:11883165-11883184 | None:intergenic | 40.0% | |
| ! | GAAGTATCTCCTTGAAACCA+AGG | + | chr5_3:11883175-11883194 | Msa0798890:CDS | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_3:11883187-11883206 | None:intergenic | 40.0% |
| ! | AGGAAGAAAGAGGTATACCT+TGG | - | chr5_3:11883195-11883214 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_3:11883469-11883488 | Msa0798890:intron | 40.0% | |
| !! | ACTTGATAATGTGAACGGCT+TGG | - | chr5_3:11883710-11883729 | None:intergenic | 40.0% |
| CTGCATGTTACCCTTTCAAT+TGG | - | chr5_3:11884107-11884126 | None:intergenic | 40.0% | |
| CCAAATTCACCAAGAAAAGG+TGG | - | chr5_3:11884176-11884195 | None:intergenic | 40.0% | |
| ! | CCACCTTTTCTTGGTGAATT+TGG | + | chr5_3:11884173-11884192 | Msa0798890:CDS | 40.0% |
| GTTACTACAATGGCATGGAA+TGG | + | chr5_3:11884246-11884265 | Msa0798890:CDS | 40.0% | |
| ATTTGGGTGTATTCACAAGC+GGG | - | chr5_3:11882749-11882768 | None:intergenic | 40.0% | |
| TTGAGTCAGAGAAGAAGGAT+AGG | + | chr5_3:11883018-11883037 | Msa0798890:CDS | 40.0% | |
| AACCATACTGCAACTTGTCT+GGG | - | chr5_3:11883068-11883087 | None:intergenic | 40.0% | |
| GAGATACTTCTCAAGAATGG+TGG | - | chr5_3:11883165-11883184 | None:intergenic | 40.0% | |
| ! | GAAGTATCTCCTTGAAACCA+AGG | + | chr5_3:11883175-11883194 | Msa0798890:CDS | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_3:11883187-11883206 | None:intergenic | 40.0% |
| ! | AGGAAGAAAGAGGTATACCT+TGG | - | chr5_3:11883195-11883214 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_3:11883469-11883488 | Msa0798890:intron | 40.0% | |
| !! | ACTTGATAATGTGAACGGCT+TGG | - | chr5_3:11883710-11883729 | None:intergenic | 40.0% |
| CTGCATGTTACCCTTTCAAT+TGG | - | chr5_3:11884107-11884126 | None:intergenic | 40.0% | |
| CCAAATTCACCAAGAAAAGG+TGG | - | chr5_3:11884176-11884195 | None:intergenic | 40.0% | |
| ! | CCACCTTTTCTTGGTGAATT+TGG | + | chr5_3:11884173-11884192 | Msa0798890:CDS | 40.0% |
| GTTACTACAATGGCATGGAA+TGG | + | chr5_3:11884246-11884265 | Msa0798890:CDS | 40.0% | |
| TTTGGGTGTATTCACAAGCG+GGG | - | chr5_3:11882748-11882767 | None:intergenic | 45.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | - | chr5_3:11882891-11882910 | None:intergenic | 45.0% | |
| GAAGAAGGATAGGCTTGCAA+TGG | + | chr5_3:11883028-11883047 | Msa0798890:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTA+TGG | + | chr5_3:11883063-11883082 | Msa0798890:CDS | 45.0% | |
| GAACCATACTGCAACTTGTC+TGG | - | chr5_3:11883069-11883088 | None:intergenic | 45.0% | |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_3:11883472-11883491 | Msa0798890:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_3:11883478-11883497 | None:intergenic | 45.0% | |
| TGTTTCTTCTCTGGTGGTCT+TGG | + | chr5_3:11883478-11883497 | Msa0798890:intron | 45.0% | |
| !! | GAATAAGCACTGGCATGCAA+CGG | + | chr5_3:11883619-11883638 | Msa0798890:intron | 45.0% |
| TATTTGGCGGAAATCAAGGG+AGG | + | chr5_3:11883928-11883947 | Msa0798890:intron | 45.0% | |
| GCTTCGAGAGCCAATTGAAA+GGG | + | chr5_3:11884094-11884113 | Msa0798890:CDS | 45.0% | |
| TTCATCCATGTCTCAGTCAG+TGG | + | chr5_3:11884139-11884158 | Msa0798890:CDS | 45.0% | |
| ! | AACTTCCACTGACTGAGACA+TGG | - | chr5_3:11884147-11884166 | None:intergenic | 45.0% |
| TTTGGGTGTATTCACAAGCG+GGG | - | chr5_3:11882748-11882767 | None:intergenic | 45.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | - | chr5_3:11882891-11882910 | None:intergenic | 45.0% | |
| GAAGAAGGATAGGCTTGCAA+TGG | + | chr5_3:11883028-11883047 | Msa0798890:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTA+TGG | + | chr5_3:11883063-11883082 | Msa0798890:CDS | 45.0% | |
| GAACCATACTGCAACTTGTC+TGG | - | chr5_3:11883069-11883088 | None:intergenic | 45.0% | |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_3:11883472-11883491 | Msa0798890:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_3:11883478-11883497 | None:intergenic | 45.0% | |
| TGTTTCTTCTCTGGTGGTCT+TGG | + | chr5_3:11883478-11883497 | Msa0798890:intron | 45.0% | |
| !! | GAATAAGCACTGGCATGCAA+CGG | + | chr5_3:11883619-11883638 | Msa0798890:intron | 45.0% |
| TATTTGGCGGAAATCAAGGG+AGG | + | chr5_3:11883928-11883947 | Msa0798890:intron | 45.0% | |
| GCTTCGAGAGCCAATTGAAA+GGG | + | chr5_3:11884094-11884113 | Msa0798890:CDS | 45.0% | |
| TTCATCCATGTCTCAGTCAG+TGG | + | chr5_3:11884139-11884158 | Msa0798890:CDS | 45.0% | |
| ! | AACTTCCACTGACTGAGACA+TGG | - | chr5_3:11884147-11884166 | None:intergenic | 45.0% |
| !!! | TAGTTAATTATAATATTTTT+TGG | + | chr5_3:11882835-11882854 | Msa0798890:intron | 5.0% |
| !!! | TAGTTAATTATAATATTTTT+TGG | + | chr5_3:11882835-11882854 | Msa0798890:intron | 5.0% |
| GATAGGCTTGCAATGGAGCT+TGG | + | chr5_3:11883035-11883054 | Msa0798890:CDS | 50.0% | |
| GGTTCCAGAATCGAAGAGCT+AGG | + | chr5_3:11883084-11883103 | Msa0798890:CDS | 50.0% | |
| TCCAGAATCGAAGAGCTAGG+TGG | + | chr5_3:11883087-11883106 | Msa0798890:CDS | 50.0% | |
| ! | TCCACCTAGCTCTTCGATTC+TGG | - | chr5_3:11883091-11883110 | None:intergenic | 50.0% |
| GCGGAAATCAAGGGAGGTAA+TGG | + | chr5_3:11883934-11883953 | Msa0798890:intron | 50.0% | |
| GGCTTCGAGAGCCAATTGAA+AGG | + | chr5_3:11884093-11884112 | Msa0798890:CDS | 50.0% | |
| GTCTCAGTCAGTGGAAGTTG+TGG | + | chr5_3:11884148-11884167 | Msa0798890:CDS | 50.0% | |
| ! | GTTGTGGACCCACCTTTTCT+TGG | + | chr5_3:11884164-11884183 | Msa0798890:CDS | 50.0% |
| GATAGGCTTGCAATGGAGCT+TGG | + | chr5_3:11883035-11883054 | Msa0798890:CDS | 50.0% | |
| GGTTCCAGAATCGAAGAGCT+AGG | + | chr5_3:11883084-11883103 | Msa0798890:CDS | 50.0% | |
| TCCAGAATCGAAGAGCTAGG+TGG | + | chr5_3:11883087-11883106 | Msa0798890:CDS | 50.0% | |
| ! | TCCACCTAGCTCTTCGATTC+TGG | - | chr5_3:11883091-11883110 | None:intergenic | 50.0% |
| GCGGAAATCAAGGGAGGTAA+TGG | + | chr5_3:11883934-11883953 | Msa0798890:intron | 50.0% | |
| GGCTTCGAGAGCCAATTGAA+AGG | + | chr5_3:11884093-11884112 | Msa0798890:CDS | 50.0% | |
| GTCTCAGTCAGTGGAAGTTG+TGG | + | chr5_3:11884148-11884167 | Msa0798890:CDS | 50.0% | |
| ! | GTTGTGGACCCACCTTTTCT+TGG | + | chr5_3:11884164-11884183 | Msa0798890:CDS | 50.0% |
| CTACGCTTGCGTCTTGGCTT+TGG | - | chr5_3:11882885-11882904 | None:intergenic | 55.0% | |
| CTGGCATGCAACGGTTCTTC+AGG | + | chr5_3:11883628-11883647 | Msa0798890:intron | 55.0% | |
| CTACGCTTGCGTCTTGGCTT+TGG | - | chr5_3:11882885-11882904 | None:intergenic | 55.0% | |
| CTGGCATGCAACGGTTCTTC+AGG | + | chr5_3:11883628-11883647 | Msa0798890:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 11882557 | 11884354 | 11882557 | ID=Msa0798890;Name=Msa0798890 |
| chr5_3 | mRNA | 11882557 | 11884354 | 11882557 | ID=Msa0798890-mRNA-1;Parent=Msa0798890;Name=Msa0798890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=147|1|1|1|1|1|3|68|215 |
| chr5_3 | exon | 11882557 | 11882782 | 11882557 | ID=Msa0798890-mRNA-1:exon:4845;Parent=Msa0798890-mRNA-1 |
| chr5_3 | exon | 11882871 | 11883196 | 11882871 | ID=Msa0798890-mRNA-1:exon:4846;Parent=Msa0798890-mRNA-1 |
| chr5_3 | exon | 11884044 | 11884354 | 11884044 | ID=Msa0798890-mRNA-1:exon:4847;Parent=Msa0798890-mRNA-1 |
| chr5_3 | five_prime_UTR | 11882557 | 11882703 | 11882557 | ID=Msa0798890-mRNA-1:five_prime_utr;Parent=Msa0798890-mRNA-1 |
| chr5_3 | CDS | 11882704 | 11882782 | 11882704 | ID=Msa0798890-mRNA-1:cds;Parent=Msa0798890-mRNA-1 |
| chr5_3 | CDS | 11882871 | 11883196 | 11882871 | ID=Msa0798890-mRNA-1:cds;Parent=Msa0798890-mRNA-1 |
| chr5_3 | CDS | 11884044 | 11884286 | 11884044 | ID=Msa0798890-mRNA-1:cds;Parent=Msa0798890-mRNA-1 |
| chr5_3 | three_prime_UTR | 11884287 | 11884354 | 11884287 | ID=Msa0798890-mRNA-1:three_prime_utr;Parent=Msa0798890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
