Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415040 | sp|O23208|ATB40_ARATH | 53.774 | 212 | 90 | 7 | 7 | 215 | 10 | 216 | 1.34e-61 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415040 | G7KC72 | 90.090 | 222 | 14 | 2 | 1 | 215 | 1 | 221 | 1.66e-130 | 375 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1415040 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0798890 | Msa1415040 | 0.887190 | 1.774013e-72 | -8.615850e-47 |
| Msa0798900 | Msa1415040 | 0.886226 | 4.111374e-72 | -8.615850e-47 |
| Msa1228040 | Msa1415040 | 0.823620 | 1.255976e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415040 | MtrunA17_Chr5g0403691 | 90.090 | 222 | 14 | 2 | 1 | 215 | 1 | 221 | 3.20e-134 | 375 |
| Msa1415040 | MtrunA17_Chr5g0403701 | 82.160 | 213 | 32 | 2 | 1 | 213 | 1 | 207 | 9.16e-115 | 326 |
| Msa1415040 | MtrunA17_Chr4g0060031 | 43.200 | 125 | 61 | 2 | 41 | 155 | 79 | 203 | 1.27e-23 | 96.3 |
| Msa1415040 | MtrunA17_Chr6g0450991 | 48.214 | 112 | 47 | 3 | 54 | 157 | 67 | 175 | 4.55e-22 | 91.3 |
| Msa1415040 | MtrunA17_Chr3g0123691 | 60.811 | 74 | 29 | 0 | 54 | 127 | 60 | 133 | 9.50e-22 | 90.9 |
| Msa1415040 | MtrunA17_Chr7g0265521 | 35.465 | 172 | 93 | 3 | 48 | 205 | 57 | 224 | 9.91e-22 | 89.4 |
| Msa1415040 | MtrunA17_Chr8g0381741 | 52.475 | 101 | 39 | 1 | 54 | 145 | 54 | 154 | 2.39e-21 | 89.7 |
| Msa1415040 | MtrunA17_Chr6g0453021 | 50.495 | 101 | 50 | 0 | 43 | 143 | 85 | 185 | 7.75e-21 | 87.8 |
| Msa1415040 | MtrunA17_Chr8g0362151 | 42.609 | 115 | 61 | 1 | 46 | 160 | 69 | 178 | 3.05e-20 | 86.3 |
| Msa1415040 | MtrunA17_Chr8g0362751 | 48.598 | 107 | 48 | 2 | 54 | 153 | 89 | 195 | 4.13e-20 | 85.9 |
| Msa1415040 | MtrunA17_Chr1g0179581 | 51.807 | 83 | 40 | 0 | 54 | 136 | 28 | 110 | 6.78e-20 | 81.3 |
| Msa1415040 | MtrunA17_Chr5g0416391 | 43.478 | 115 | 60 | 1 | 46 | 160 | 69 | 178 | 7.09e-20 | 85.5 |
| Msa1415040 | MtrunA17_Chr5g0415941 | 59.155 | 71 | 29 | 0 | 54 | 124 | 87 | 157 | 1.27e-19 | 85.1 |
| Msa1415040 | MtrunA17_Chr3g0127511 | 39.716 | 141 | 68 | 3 | 56 | 196 | 40 | 163 | 4.57e-19 | 82.4 |
| Msa1415040 | MtrunA17_Chr3g0119291 | 47.368 | 95 | 50 | 0 | 51 | 145 | 56 | 150 | 1.07e-17 | 79.0 |
| Msa1415040 | MtrunA17_Chr8g0346251 | 44.860 | 107 | 56 | 1 | 58 | 164 | 45 | 148 | 1.15e-17 | 79.0 |
| Msa1415040 | MtrunA17_Chr7g0217111 | 47.778 | 90 | 47 | 0 | 54 | 143 | 80 | 169 | 1.48e-15 | 73.6 |
| Msa1415040 | MtrunA17_Chr2g0308611 | 35.616 | 146 | 88 | 2 | 34 | 173 | 180 | 325 | 3.39e-14 | 70.1 |
| Msa1415040 | MtrunA17_Chr4g0055851 | 42.727 | 110 | 57 | 2 | 39 | 143 | 106 | 214 | 3.86e-14 | 69.7 |
| Msa1415040 | MtrunA17_Chr8g0335131 | 45.263 | 95 | 47 | 1 | 54 | 143 | 146 | 240 | 1.22e-13 | 68.6 |
| Msa1415040 | MtrunA17_Chr4g0044091 | 53.731 | 67 | 31 | 0 | 54 | 120 | 65 | 131 | 2.21e-13 | 66.2 |
| Msa1415040 | MtrunA17_Chr4g0054421 | 45.263 | 95 | 47 | 1 | 54 | 143 | 127 | 221 | 3.27e-13 | 67.0 |
| Msa1415040 | MtrunA17_Chr1g0175651 | 38.053 | 113 | 65 | 1 | 34 | 141 | 134 | 246 | 2.60e-12 | 64.7 |
| Msa1415040 | MtrunA17_Chr5g0400781 | 45.263 | 95 | 47 | 1 | 54 | 143 | 123 | 217 | 3.56e-12 | 63.9 |
| Msa1415040 | MtrunA17_Chr7g0258831 | 37.500 | 112 | 65 | 1 | 35 | 141 | 141 | 252 | 5.14e-12 | 63.5 |
| Msa1415040 | MtrunA17_Chr5g0399491 | 43.158 | 95 | 49 | 1 | 54 | 143 | 136 | 230 | 6.36e-12 | 63.5 |
| Msa1415040 | MtrunA17_Chr1g0151971 | 45.349 | 86 | 47 | 0 | 54 | 139 | 130 | 215 | 8.92e-12 | 63.2 |
| Msa1415040 | MtrunA17_Chr3g0135331 | 43.836 | 73 | 41 | 0 | 52 | 124 | 143 | 215 | 3.04e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415040 | AT4G36740.2 | 53.302 | 212 | 92 | 6 | 7 | 215 | 10 | 217 | 5.16e-63 | 195 |
| Msa1415040 | AT4G36740.1 | 53.774 | 212 | 90 | 7 | 7 | 215 | 10 | 216 | 1.36e-62 | 194 |
| Msa1415040 | AT2G18550.1 | 47.788 | 226 | 101 | 8 | 1 | 215 | 1 | 220 | 1.90e-62 | 194 |
| Msa1415040 | AT5G66700.1 | 45.333 | 225 | 104 | 7 | 5 | 215 | 9 | 228 | 1.37e-44 | 149 |
| Msa1415040 | AT3G01470.1 | 49.505 | 101 | 44 | 1 | 50 | 143 | 64 | 164 | 1.13e-23 | 95.9 |
| Msa1415040 | AT1G69780.1 | 38.816 | 152 | 83 | 3 | 2 | 143 | 23 | 174 | 1.22e-22 | 93.2 |
| Msa1415040 | AT4G40060.1 | 57.317 | 82 | 35 | 0 | 43 | 124 | 48 | 129 | 9.52e-22 | 90.9 |
| Msa1415040 | AT2G22430.1 | 64.789 | 71 | 25 | 0 | 54 | 124 | 62 | 132 | 1.68e-21 | 90.5 |
| Msa1415040 | AT1G26960.1 | 44.355 | 124 | 64 | 1 | 54 | 177 | 71 | 189 | 1.88e-21 | 89.4 |
| Msa1415040 | AT5G03790.1 | 50.000 | 94 | 46 | 1 | 46 | 139 | 70 | 162 | 7.30e-21 | 87.4 |
| Msa1415040 | AT5G65310.2 | 65.152 | 66 | 23 | 0 | 54 | 119 | 54 | 119 | 1.29e-20 | 87.8 |
| Msa1415040 | AT5G65310.1 | 58.108 | 74 | 31 | 0 | 46 | 119 | 64 | 137 | 1.36e-20 | 88.2 |
| Msa1415040 | AT5G03790.2 | 48.936 | 94 | 47 | 1 | 46 | 139 | 70 | 162 | 1.93e-20 | 85.5 |
| Msa1415040 | AT2G46680.1 | 41.732 | 127 | 67 | 1 | 48 | 174 | 26 | 145 | 2.96e-20 | 86.3 |
| Msa1415040 | AT2G46680.2 | 47.748 | 111 | 51 | 1 | 48 | 151 | 26 | 136 | 1.14e-19 | 84.7 |
| Msa1415040 | AT2G36610.1 | 46.296 | 108 | 50 | 2 | 46 | 145 | 63 | 170 | 1.72e-19 | 82.8 |
| Msa1415040 | AT3G01220.1 | 50.000 | 86 | 43 | 0 | 39 | 124 | 72 | 157 | 1.09e-18 | 82.4 |
| Msa1415040 | AT5G53980.1 | 44.444 | 99 | 55 | 0 | 45 | 143 | 2 | 100 | 1.65e-18 | 79.3 |
| Msa1415040 | AT5G15150.1 | 53.750 | 80 | 37 | 0 | 41 | 120 | 102 | 181 | 2.04e-18 | 82.0 |
| Msa1415040 | AT3G61890.1 | 41.176 | 119 | 64 | 1 | 57 | 169 | 33 | 151 | 1.07e-17 | 79.0 |
| Msa1415040 | AT1G27045.1 | 42.735 | 117 | 54 | 2 | 52 | 155 | 66 | 182 | 6.06e-17 | 76.6 |
| Msa1415040 | AT1G27045.2 | 36.054 | 147 | 79 | 2 | 52 | 191 | 15 | 153 | 6.90e-17 | 75.5 |
| Msa1415040 | AT1G27045.5 | 36.054 | 147 | 79 | 2 | 52 | 191 | 23 | 161 | 8.05e-17 | 75.5 |
| Msa1415040 | AT1G27045.3 | 36.054 | 147 | 79 | 2 | 52 | 191 | 23 | 161 | 8.05e-17 | 75.5 |
| Msa1415040 | AT1G27045.4 | 57.353 | 68 | 29 | 0 | 52 | 119 | 66 | 133 | 1.88e-16 | 75.9 |
| Msa1415040 | AT2G22800.1 | 45.161 | 93 | 46 | 1 | 54 | 141 | 113 | 205 | 1.94e-13 | 67.8 |
| Msa1415040 | AT4G16780.1 | 40.741 | 108 | 54 | 2 | 41 | 143 | 121 | 223 | 6.80e-13 | 66.6 |
| Msa1415040 | AT4G37790.1 | 44.086 | 93 | 47 | 1 | 54 | 141 | 126 | 218 | 1.78e-12 | 65.1 |
| Msa1415040 | AT4G17460.1 | 40.385 | 104 | 57 | 1 | 45 | 143 | 126 | 229 | 3.48e-12 | 64.3 |
| Msa1415040 | AT2G01430.1 | 37.008 | 127 | 65 | 2 | 54 | 179 | 139 | 251 | 3.93e-12 | 64.3 |
| Msa1415040 | AT5G47370.1 | 37.931 | 116 | 67 | 1 | 33 | 143 | 109 | 224 | 1.08e-11 | 63.2 |
| Msa1415040 | AT5G06710.1 | 39.048 | 105 | 64 | 0 | 35 | 139 | 171 | 275 | 1.90e-11 | 62.8 |
| Msa1415040 | AT3G60390.1 | 40.000 | 105 | 58 | 1 | 44 | 143 | 152 | 256 | 2.61e-11 | 62.4 |
Find 47 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGTTGAGGAATTATT+TGG | 0.121044 | tig0024162:+68037 | None:intergenic |
| CTATATGTATTTATAATAAT+AGG | 0.164253 | tig0024162:+68241 | None:intergenic |
| TCCACCTAGCTCTTCGATTC+TGG | 0.214518 | tig0024162:+67712 | None:intergenic |
| TGATGAACAGATGAAAATTT+TGG | 0.274813 | tig0024162:-67832 | Msa1415040:CDS |
| TATATGTATTTATAATAATA+GGG | 0.279274 | tig0024162:+68242 | None:intergenic |
| TAAGCATCATTTGGTCTTGA+TGG | 0.320716 | tig0024162:+68091 | None:intergenic |
| TACTCATCATTCTATTAATT+AGG | 0.321798 | tig0024162:-68168 | Msa1415040:five_prime_UTR |
| GAACCATACTGCAACTTGTC+TGG | 0.324204 | tig0024162:+67734 | None:intergenic |
| CTACGCTTGCGTCTTGGCTT+TGG | 0.328958 | tig0024162:+67918 | None:intergenic |
| TTGTAGTAACATGTTTCATT+AGG | 0.345702 | tig0024162:+66566 | None:intergenic |
| CTGCATGTTACCCTTTCAAT+TGG | 0.385057 | tig0024162:+66695 | None:intergenic |
| ATCCCAGACAAGTTGCAGTA+TGG | 0.391231 | tig0024162:-67737 | Msa1415040:CDS |
| TTCTTACTACGCTTGCGTCT+TGG | 0.426044 | tig0024162:+67912 | None:intergenic |
| ACCTTGTTGAGGAATTATTT+GGG | 0.434434 | tig0024162:+68038 | None:intergenic |
| AGAGGTATACCTTGGTTTCA+AGG | 0.439510 | tig0024162:+67616 | None:intergenic |
| ACTGAGACATAAGCATCATT+TGG | 0.463969 | tig0024162:+68082 | None:intergenic |
| CGTAGTAAGAAGAACAAAAG+TGG | 0.482800 | tig0024162:-67900 | Msa1415040:CDS |
| GATAGGCTTGCAATGGAGCT+TGG | 0.487004 | tig0024162:-67765 | Msa1415040:CDS |
| AAGGAGATACTTCTCAAGAA+TGG | 0.497377 | tig0024162:+67635 | None:intergenic |
| TAAACTTGAGTCAGAGAAGA+AGG | 0.499532 | tig0024162:-67787 | Msa1415040:CDS |
| GTCTCAGTCAGTGGAAGTTG+TGG | 0.499926 | tig0024162:-66651 | Msa1415040:CDS |
| GGTGAATTTGGTGTTGATAA+CGG | 0.514478 | tig0024162:-66614 | Msa1415040:CDS |
| ACACCAAATTCACCAAGAAA+AGG | 0.517876 | tig0024162:+66623 | None:intergenic |
| AACCATACTGCAACTTGTCT+GGG | 0.517968 | tig0024162:+67735 | None:intergenic |
| TTGAGTCAGAGAAGAAGGAT+AGG | 0.537241 | tig0024162:-67782 | Msa1415040:CDS |
| ATATGTATTTATAATAATAG+GGG | 0.538341 | tig0024162:+68243 | None:intergenic |
| ATTTGGGTGTATTCACAAGC+GGG | 0.547719 | tig0024162:+68054 | None:intergenic |
| GCTTCGAGAGCCAATTGAAA+GGG | 0.560533 | tig0024162:-66705 | Msa1415040:CDS |
| CCAAATTCACCAAGAAAAGG+TGG | 0.566129 | tig0024162:+66626 | None:intergenic |
| GTTACTACAATGGCATGGAA+TGG | 0.566673 | tig0024162:-66553 | Msa1415040:CDS |
| GGCTTCGAGAGCCAATTGAA+AGG | 0.569118 | tig0024162:-66706 | Msa1415040:CDS |
| AATCTGAGAAAGAAAATCAA+AGG | 0.580369 | tig0024162:-66727 | Msa1415040:CDS |
| AACTTCCACTGACTGAGACA+TGG | 0.581765 | tig0024162:+66655 | None:intergenic |
| TTCATCCATGTCTCAGTCAG+TGG | 0.582296 | tig0024162:-66660 | Msa1415040:CDS |
| GAAGAAGGATAGGCTTGCAA+TGG | 0.584642 | tig0024162:-67772 | Msa1415040:CDS |
| AATGAAACATGTTACTACAA+TGG | 0.596613 | tig0024162:-66563 | Msa1415040:CDS |
| TGTATAGGTGTTGAAGCTAA+CGG | 0.597602 | tig0024162:-66762 | Msa1415040:intron |
| GGTTCCAGAATCGAAGAGCT+AGG | 0.598892 | tig0024162:-67716 | Msa1415040:CDS |
| TATTTGGGTGTATTCACAAG+CGG | 0.604533 | tig0024162:+68053 | None:intergenic |
| ACTTGATACTAACCTTGTTG+AGG | 0.606044 | tig0024162:+68027 | None:intergenic |
| GAGATACTTCTCAAGAATGG+TGG | 0.612212 | tig0024162:+67638 | None:intergenic |
| AACATGTTACTACAATGGCA+TGG | 0.616964 | tig0024162:-66558 | Msa1415040:CDS |
| GAAGTATCTCCTTGAAACCA+AGG | 0.625666 | tig0024162:-67625 | Msa1415040:intron |
| CAAATTCACCAAGAAAAGGT+GGG | 0.668413 | tig0024162:+66627 | None:intergenic |
| TTTGGGTGTATTCACAAGCG+GGG | 0.669434 | tig0024162:+68055 | None:intergenic |
| ACCCAAATAATTCCTCAACA+AGG | 0.682907 | tig0024162:-68039 | Msa1415040:intron |
| TCCAGAATCGAAGAGCTAGG+TGG | 0.707809 | tig0024162:-67713 | Msa1415040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGTATTTATAATAATAG+GGG | + | tig0024162:66480-66499 | None:intergenic | 10.0% |
| !! | CTATATGTATTTATAATAAT+AGG | + | tig0024162:66482-66501 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTTAAAATCAG+TGG | - | tig0024162:67210-67229 | Msa1415040:intron | 10.0% |
| !! | TTCAAAAAATATAATATTGT+TGG | + | tig0024162:67285-67304 | None:intergenic | 10.0% |
| !! | TAAACAAAGTAATTAAATAA+AGG | + | tig0024162:67475-67494 | None:intergenic | 10.0% |
| !! | ATATGTATTTATAATAATAG+GGG | + | tig0024162:66480-66499 | None:intergenic | 10.0% |
| !! | CTATATGTATTTATAATAAT+AGG | + | tig0024162:66482-66501 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTTAAAATCAG+TGG | - | tig0024162:67210-67229 | Msa1415040:intron | 10.0% |
| !! | TTCAAAAAATATAATATTGT+TGG | + | tig0024162:67285-67304 | None:intergenic | 10.0% |
| !! | TAAACAAAGTAATTAAATAA+AGG | + | tig0024162:67475-67494 | None:intergenic | 10.0% |
| !!! | ATTTTTTGGTATGTTTTTTT+AGG | - | tig0024162:66769-66788 | Msa1415040:intron | 15.0% |
| !!! | TTTTTTGGTATGTTTTTTTA+GGG | - | tig0024162:66770-66789 | Msa1415040:intron | 15.0% |
| !! | AAAAAAAAATGCATAAAAAG+AGG | + | tig0024162:67135-67154 | None:intergenic | 15.0% |
| !! | CTATAGTAATATAATATTGT+TGG | + | tig0024162:67313-67332 | None:intergenic | 15.0% |
| !!! | ACTTTATCATTTTTCATTAA+GGG | + | tig0024162:67596-67615 | None:intergenic | 15.0% |
| !!! | TACTTTATCATTTTTCATTA+AGG | + | tig0024162:67597-67616 | None:intergenic | 15.0% |
| !!! | AACCAATTAAATTTGTTATT+TGG | - | tig0024162:67833-67852 | Msa1415040:CDS | 15.0% |
| !!! | ATTTTTTGGTATGTTTTTTT+AGG | - | tig0024162:66769-66788 | Msa1415040:intron | 15.0% |
| !!! | TTTTTTGGTATGTTTTTTTA+GGG | - | tig0024162:66770-66789 | Msa1415040:intron | 15.0% |
| !! | AAAAAAAAATGCATAAAAAG+AGG | + | tig0024162:67135-67154 | None:intergenic | 15.0% |
| !! | CTATAGTAATATAATATTGT+TGG | + | tig0024162:67313-67332 | None:intergenic | 15.0% |
| !!! | ACTTTATCATTTTTCATTAA+GGG | + | tig0024162:67596-67615 | None:intergenic | 15.0% |
| !!! | TACTTTATCATTTTTCATTA+AGG | + | tig0024162:67597-67616 | None:intergenic | 15.0% |
| !!! | AACCAATTAAATTTGTTATT+TGG | - | tig0024162:67833-67852 | Msa1415040:CDS | 15.0% |
| !! | TACTCATCATTCTATTAATT+AGG | - | tig0024162:66552-66571 | Msa1415040:CDS | 20.0% |
| !!! | TTTTTGGTATGTTTTTTTAG+GGG | - | tig0024162:66771-66790 | Msa1415040:intron | 20.0% |
| !!! | AAAATTTTGGAGGAAAATTT+TGG | - | tig0024162:66901-66920 | Msa1415040:intron | 20.0% |
| !!! | AAAATTTAAAATCAGTGGAT+TGG | - | tig0024162:67215-67234 | Msa1415040:intron | 20.0% |
| !!! | CTTTATCATTTTTCATTAAG+GGG | + | tig0024162:67595-67614 | None:intergenic | 20.0% |
| !!! | CAATTAAATTTGTTATTTGG+CGG | - | tig0024162:67836-67855 | Msa1415040:CDS | 20.0% |
| !! | TACTCATCATTCTATTAATT+AGG | - | tig0024162:66552-66571 | Msa1415040:CDS | 20.0% |
| !!! | TTTTTGGTATGTTTTTTTAG+GGG | - | tig0024162:66771-66790 | Msa1415040:intron | 20.0% |
| !!! | AAAATTTTGGAGGAAAATTT+TGG | - | tig0024162:66901-66920 | Msa1415040:intron | 20.0% |
| !!! | AAAATTTAAAATCAGTGGAT+TGG | - | tig0024162:67215-67234 | Msa1415040:intron | 20.0% |
| !!! | CTTTATCATTTTTCATTAAG+GGG | + | tig0024162:67595-67614 | None:intergenic | 20.0% |
| !!! | CAATTAAATTTGTTATTTGG+CGG | - | tig0024162:67836-67855 | Msa1415040:CDS | 20.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | - | tig0024162:66857-66876 | Msa1415040:intron | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | + | tig0024162:66861-66880 | None:intergenic | 25.0% |
| !! | TGATGAACAGATGAAAATTT+TGG | - | tig0024162:66888-66907 | Msa1415040:intron | 25.0% |
| ! | TTCTCTCTTTCAACATTTAA+GGG | + | tig0024162:67522-67541 | None:intergenic | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+AGG | + | tig0024162:67523-67542 | None:intergenic | 25.0% |
| ! | CGCCAAATAACAAATTTAAT+TGG | + | tig0024162:67838-67857 | None:intergenic | 25.0% |
| ! | GTTCCATTAATTGTTTGTAT+AGG | - | tig0024162:67943-67962 | Msa1415040:intron | 25.0% |
| ! | ACACCTATACAAACAATTAA+TGG | + | tig0024162:67949-67968 | None:intergenic | 25.0% |
| ! | AATCTGAGAAAGAAAATCAA+AGG | - | tig0024162:67993-68012 | Msa1415040:intron | 25.0% |
| ! | TTGTAGTAACATGTTTCATT+AGG | + | tig0024162:68157-68176 | None:intergenic | 25.0% |
| ! | AATGAAACATGTTACTACAA+TGG | - | tig0024162:68157-68176 | Msa1415040:five_prime_UTR | 25.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | - | tig0024162:66857-66876 | Msa1415040:intron | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | + | tig0024162:66861-66880 | None:intergenic | 25.0% |
| !! | TGATGAACAGATGAAAATTT+TGG | - | tig0024162:66888-66907 | Msa1415040:intron | 25.0% |
| ! | TTCTCTCTTTCAACATTTAA+GGG | + | tig0024162:67522-67541 | None:intergenic | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+AGG | + | tig0024162:67523-67542 | None:intergenic | 25.0% |
| ! | CGCCAAATAACAAATTTAAT+TGG | + | tig0024162:67838-67857 | None:intergenic | 25.0% |
| ! | GTTCCATTAATTGTTTGTAT+AGG | - | tig0024162:67943-67962 | Msa1415040:intron | 25.0% |
| ! | ACACCTATACAAACAATTAA+TGG | + | tig0024162:67949-67968 | None:intergenic | 25.0% |
| ! | AATCTGAGAAAGAAAATCAA+AGG | - | tig0024162:67993-68012 | Msa1415040:intron | 25.0% |
| ! | TTGTAGTAACATGTTTCATT+AGG | + | tig0024162:68157-68176 | None:intergenic | 25.0% |
| ! | AATGAAACATGTTACTACAA+TGG | - | tig0024162:68157-68176 | Msa1415040:five_prime_UTR | 25.0% |
| !!! | GATGTGTTATCCTTGTTTTT+TGG | + | tig0024162:66522-66541 | None:intergenic | 30.0% |
| ACCTTGTTGAGGAATTATTT+GGG | + | tig0024162:66685-66704 | None:intergenic | 30.0% | |
| AACCTTGTTGAGGAATTATT+TGG | + | tig0024162:66686-66705 | None:intergenic | 30.0% | |
| ! | TGAACAGATGAAAATTTTGG+AGG | - | tig0024162:66891-66910 | Msa1415040:intron | 30.0% |
| AACACTAGTAACGTCAATTT+AGG | - | tig0024162:67360-67379 | Msa1415040:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | - | tig0024162:67361-67380 | Msa1415040:intron | 30.0% | |
| TTGAAAGAGAGAATAAGTAC+TGG | - | tig0024162:67529-67548 | Msa1415040:intron | 30.0% | |
| !! | TGAGAACTTGATAATGTGAA+CGG | + | tig0024162:67635-67654 | None:intergenic | 30.0% |
| ! | TGGAAATATGGTCACATTTT+TGG | + | tig0024162:67756-67775 | None:intergenic | 30.0% |
| TAGATAAATAGCAATGCTCA+TGG | + | tig0024162:67776-67795 | None:intergenic | 30.0% | |
| !!! | GATGTGTTATCCTTGTTTTT+TGG | + | tig0024162:66522-66541 | None:intergenic | 30.0% |
| ACCTTGTTGAGGAATTATTT+GGG | + | tig0024162:66685-66704 | None:intergenic | 30.0% | |
| AACCTTGTTGAGGAATTATT+TGG | + | tig0024162:66686-66705 | None:intergenic | 30.0% | |
| ! | TGAACAGATGAAAATTTTGG+AGG | - | tig0024162:66891-66910 | Msa1415040:intron | 30.0% |
| AACACTAGTAACGTCAATTT+AGG | - | tig0024162:67360-67379 | Msa1415040:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | - | tig0024162:67361-67380 | Msa1415040:intron | 30.0% | |
| TTGAAAGAGAGAATAAGTAC+TGG | - | tig0024162:67529-67548 | Msa1415040:intron | 30.0% | |
| !! | TGAGAACTTGATAATGTGAA+CGG | + | tig0024162:67635-67654 | None:intergenic | 30.0% |
| ! | TGGAAATATGGTCACATTTT+TGG | + | tig0024162:67756-67775 | None:intergenic | 30.0% |
| TAGATAAATAGCAATGCTCA+TGG | + | tig0024162:67776-67795 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGGAGACAACGTTA+AGG | + | tig0024162:66508-66527 | None:intergenic | 35.0% |
| AACGTTGTCTCCAAAAAACA+AGG | - | tig0024162:66509-66528 | Msa1415040:three_prime_UTR | 35.0% | |
| !! | TAAGCATCATTTGGTCTTGA+TGG | + | tig0024162:66632-66651 | None:intergenic | 35.0% |
| ACTGAGACATAAGCATCATT+TGG | + | tig0024162:66641-66660 | None:intergenic | 35.0% | |
| TATTTGGGTGTATTCACAAG+CGG | + | tig0024162:66670-66689 | None:intergenic | 35.0% | |
| ACCCAAATAATTCCTCAACA+AGG | - | tig0024162:66681-66700 | Msa1415040:CDS | 35.0% | |
| ACTTGATACTAACCTTGTTG+AGG | + | tig0024162:66696-66715 | None:intergenic | 35.0% | |
| CGTAGTAAGAAGAACAAAAG+TGG | - | tig0024162:66820-66839 | Msa1415040:intron | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | - | tig0024162:66933-66952 | Msa1415040:intron | 35.0% | |
| AAGGAGATACTTCTCAAGAA+TGG | + | tig0024162:67088-67107 | None:intergenic | 35.0% | |
| GCATAAAAAGAGGAAGAAAG+AGG | + | tig0024162:67125-67144 | None:intergenic | 35.0% | |
| ACATGAAATGAAACATCGTG+TGG | + | tig0024162:67666-67685 | None:intergenic | 35.0% | |
| ACACGATGTTTCATTTCATG+TGG | - | tig0024162:67665-67684 | Msa1415040:CDS | 35.0% | |
| TAGCAATGCTCATGGAAATA+TGG | + | tig0024162:67768-67787 | None:intergenic | 35.0% | |
| !! | TTGTTATTTGGCGGAAATCA+AGG | - | tig0024162:67845-67864 | Msa1415040:CDS | 35.0% |
| ! | TGTTATTTGGCGGAAATCAA+GGG | - | tig0024162:67846-67865 | Msa1415040:CDS | 35.0% |
| !! | TGTATAGGTGTTGAAGCTAA+CGG | - | tig0024162:67958-67977 | Msa1415040:intron | 35.0% |
| CAAATTCACCAAGAAAAGGT+GGG | + | tig0024162:68096-68115 | None:intergenic | 35.0% | |
| ACACCAAATTCACCAAGAAA+AGG | + | tig0024162:68100-68119 | None:intergenic | 35.0% | |
| !! | GGTGAATTTGGTGTTGATAA+CGG | - | tig0024162:68106-68125 | Msa1415040:exon | 35.0% |
| AACATGTTACTACAATGGCA+TGG | - | tig0024162:68162-68181 | Msa1415040:five_prime_UTR | 35.0% | |
| ! | AATAATAGGGGTGAAGTGTT+GGG | + | tig0024162:66468-66487 | None:intergenic | 35.0% |
| TAATAATAGGGGTGAAGTGT+TGG | + | tig0024162:66469-66488 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGAGACAACGTTA+AGG | + | tig0024162:66508-66527 | None:intergenic | 35.0% |
| AACGTTGTCTCCAAAAAACA+AGG | - | tig0024162:66509-66528 | Msa1415040:three_prime_UTR | 35.0% | |
| !! | TAAGCATCATTTGGTCTTGA+TGG | + | tig0024162:66632-66651 | None:intergenic | 35.0% |
| ACTGAGACATAAGCATCATT+TGG | + | tig0024162:66641-66660 | None:intergenic | 35.0% | |
| TATTTGGGTGTATTCACAAG+CGG | + | tig0024162:66670-66689 | None:intergenic | 35.0% | |
| ACCCAAATAATTCCTCAACA+AGG | - | tig0024162:66681-66700 | Msa1415040:CDS | 35.0% | |
| ACTTGATACTAACCTTGTTG+AGG | + | tig0024162:66696-66715 | None:intergenic | 35.0% | |
| CGTAGTAAGAAGAACAAAAG+TGG | - | tig0024162:66820-66839 | Msa1415040:intron | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | - | tig0024162:66933-66952 | Msa1415040:intron | 35.0% | |
| AAGGAGATACTTCTCAAGAA+TGG | + | tig0024162:67088-67107 | None:intergenic | 35.0% | |
| GCATAAAAAGAGGAAGAAAG+AGG | + | tig0024162:67125-67144 | None:intergenic | 35.0% | |
| ACATGAAATGAAACATCGTG+TGG | + | tig0024162:67666-67685 | None:intergenic | 35.0% | |
| ACACGATGTTTCATTTCATG+TGG | - | tig0024162:67665-67684 | Msa1415040:CDS | 35.0% | |
| TAGCAATGCTCATGGAAATA+TGG | + | tig0024162:67768-67787 | None:intergenic | 35.0% | |
| !! | TTGTTATTTGGCGGAAATCA+AGG | - | tig0024162:67845-67864 | Msa1415040:CDS | 35.0% |
| ! | TGTTATTTGGCGGAAATCAA+GGG | - | tig0024162:67846-67865 | Msa1415040:CDS | 35.0% |
| !! | TGTATAGGTGTTGAAGCTAA+CGG | - | tig0024162:67958-67977 | Msa1415040:intron | 35.0% |
| CAAATTCACCAAGAAAAGGT+GGG | + | tig0024162:68096-68115 | None:intergenic | 35.0% | |
| ACACCAAATTCACCAAGAAA+AGG | + | tig0024162:68100-68119 | None:intergenic | 35.0% | |
| !! | GGTGAATTTGGTGTTGATAA+CGG | - | tig0024162:68106-68125 | Msa1415040:exon | 35.0% |
| AACATGTTACTACAATGGCA+TGG | - | tig0024162:68162-68181 | Msa1415040:five_prime_UTR | 35.0% | |
| ATTTGGGTGTATTCACAAGC+GGG | + | tig0024162:66669-66688 | None:intergenic | 40.0% | |
| TTGAGTCAGAGAAGAAGGAT+AGG | - | tig0024162:66938-66957 | Msa1415040:intron | 40.0% | |
| AACCATACTGCAACTTGTCT+GGG | + | tig0024162:66988-67007 | None:intergenic | 40.0% | |
| GAGATACTTCTCAAGAATGG+TGG | + | tig0024162:67085-67104 | None:intergenic | 40.0% | |
| ! | GAAGTATCTCCTTGAAACCA+AGG | - | tig0024162:67095-67114 | Msa1415040:intron | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | + | tig0024162:67107-67126 | None:intergenic | 40.0% |
| ! | AGGAAGAAAGAGGTATACCT+TGG | + | tig0024162:67115-67134 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | - | tig0024162:67389-67408 | Msa1415040:intron | 40.0% | |
| !! | GAATAAGTACTGGCATGCAA+CGG | - | tig0024162:67539-67558 | Msa1415040:intron | 40.0% |
| !! | ACTTGATAATGTGAACGGCT+TGG | + | tig0024162:67630-67649 | None:intergenic | 40.0% |
| CTGCATGTTACCCTTTCAAT+TGG | + | tig0024162:68028-68047 | None:intergenic | 40.0% | |
| CCAAATTCACCAAGAAAAGG+TGG | + | tig0024162:68097-68116 | None:intergenic | 40.0% | |
| ! | CCACCTTTTCTTGGTGAATT+TGG | - | tig0024162:68094-68113 | Msa1415040:CDS | 40.0% |
| GTTACTACAATGGCATGGAA+TGG | - | tig0024162:68167-68186 | Msa1415040:five_prime_UTR | 40.0% | |
| ATTTGGGTGTATTCACAAGC+GGG | + | tig0024162:66669-66688 | None:intergenic | 40.0% | |
| TTGAGTCAGAGAAGAAGGAT+AGG | - | tig0024162:66938-66957 | Msa1415040:intron | 40.0% | |
| AACCATACTGCAACTTGTCT+GGG | + | tig0024162:66988-67007 | None:intergenic | 40.0% | |
| GAGATACTTCTCAAGAATGG+TGG | + | tig0024162:67085-67104 | None:intergenic | 40.0% | |
| ! | GAAGTATCTCCTTGAAACCA+AGG | - | tig0024162:67095-67114 | Msa1415040:intron | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | + | tig0024162:67107-67126 | None:intergenic | 40.0% |
| ! | AGGAAGAAAGAGGTATACCT+TGG | + | tig0024162:67115-67134 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | - | tig0024162:67389-67408 | Msa1415040:intron | 40.0% | |
| !! | GAATAAGTACTGGCATGCAA+CGG | - | tig0024162:67539-67558 | Msa1415040:intron | 40.0% |
| !! | ACTTGATAATGTGAACGGCT+TGG | + | tig0024162:67630-67649 | None:intergenic | 40.0% |
| CTGCATGTTACCCTTTCAAT+TGG | + | tig0024162:68028-68047 | None:intergenic | 40.0% | |
| CCAAATTCACCAAGAAAAGG+TGG | + | tig0024162:68097-68116 | None:intergenic | 40.0% | |
| ! | CCACCTTTTCTTGGTGAATT+TGG | - | tig0024162:68094-68113 | Msa1415040:CDS | 40.0% |
| GTTACTACAATGGCATGGAA+TGG | - | tig0024162:68167-68186 | Msa1415040:five_prime_UTR | 40.0% | |
| TTTGGGTGTATTCACAAGCG+GGG | + | tig0024162:66668-66687 | None:intergenic | 45.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | + | tig0024162:66811-66830 | None:intergenic | 45.0% | |
| GAAGAAGGATAGGCTTGCAA+TGG | - | tig0024162:66948-66967 | Msa1415040:intron | 45.0% | |
| ATCCCAGACAAGTTGCAGTA+TGG | - | tig0024162:66983-67002 | Msa1415040:intron | 45.0% | |
| GAACCATACTGCAACTTGTC+TGG | + | tig0024162:66989-67008 | None:intergenic | 45.0% | |
| CTACCATGTTTCTTCTCTGG+TGG | - | tig0024162:67392-67411 | Msa1415040:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | + | tig0024162:67398-67417 | None:intergenic | 45.0% | |
| TGTTTCTTCTCTGGTGGTCT+TGG | - | tig0024162:67398-67417 | Msa1415040:intron | 45.0% | |
| TATTTGGCGGAAATCAAGGG+AGG | - | tig0024162:67849-67868 | Msa1415040:CDS | 45.0% | |
| GCTTCGAGAGCCAATTGAAA+GGG | - | tig0024162:68015-68034 | Msa1415040:intron | 45.0% | |
| TTCATCCATGTCTCAGTCAG+TGG | - | tig0024162:68060-68079 | Msa1415040:CDS | 45.0% | |
| ! | AACTTCCACTGACTGAGACA+TGG | + | tig0024162:68068-68087 | None:intergenic | 45.0% |
| TTTGGGTGTATTCACAAGCG+GGG | + | tig0024162:66668-66687 | None:intergenic | 45.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | + | tig0024162:66811-66830 | None:intergenic | 45.0% | |
| GAAGAAGGATAGGCTTGCAA+TGG | - | tig0024162:66948-66967 | Msa1415040:intron | 45.0% | |
| ATCCCAGACAAGTTGCAGTA+TGG | - | tig0024162:66983-67002 | Msa1415040:intron | 45.0% | |
| GAACCATACTGCAACTTGTC+TGG | + | tig0024162:66989-67008 | None:intergenic | 45.0% | |
| CTACCATGTTTCTTCTCTGG+TGG | - | tig0024162:67392-67411 | Msa1415040:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | + | tig0024162:67398-67417 | None:intergenic | 45.0% | |
| TGTTTCTTCTCTGGTGGTCT+TGG | - | tig0024162:67398-67417 | Msa1415040:intron | 45.0% | |
| TATTTGGCGGAAATCAAGGG+AGG | - | tig0024162:67849-67868 | Msa1415040:CDS | 45.0% | |
| GCTTCGAGAGCCAATTGAAA+GGG | - | tig0024162:68015-68034 | Msa1415040:intron | 45.0% | |
| TTCATCCATGTCTCAGTCAG+TGG | - | tig0024162:68060-68079 | Msa1415040:CDS | 45.0% | |
| ! | AACTTCCACTGACTGAGACA+TGG | + | tig0024162:68068-68087 | None:intergenic | 45.0% |
| !! | TATATGTATTTATAATAATA+GGG | + | tig0024162:66481-66500 | None:intergenic | 5.0% |
| !!! | TAGTTAATTATAATATTTTT+TGG | - | tig0024162:66755-66774 | Msa1415040:CDS | 5.0% |
| !! | TATATGTATTTATAATAATA+GGG | + | tig0024162:66481-66500 | None:intergenic | 5.0% |
| !!! | TAGTTAATTATAATATTTTT+TGG | - | tig0024162:66755-66774 | Msa1415040:CDS | 5.0% |
| GATAGGCTTGCAATGGAGCT+TGG | - | tig0024162:66955-66974 | Msa1415040:intron | 50.0% | |
| GGTTCCAGAATCGAAGAGCT+AGG | - | tig0024162:67004-67023 | Msa1415040:intron | 50.0% | |
| TCCAGAATCGAAGAGCTAGG+TGG | - | tig0024162:67007-67026 | Msa1415040:intron | 50.0% | |
| ! | TCCACCTAGCTCTTCGATTC+TGG | + | tig0024162:67011-67030 | None:intergenic | 50.0% |
| GCGGAAATCAAGGGAGGTAA+TGG | - | tig0024162:67855-67874 | Msa1415040:CDS | 50.0% | |
| GGCTTCGAGAGCCAATTGAA+AGG | - | tig0024162:68014-68033 | Msa1415040:intron | 50.0% | |
| GTCTCAGTCAGTGGAAGTTG+TGG | - | tig0024162:68069-68088 | Msa1415040:CDS | 50.0% | |
| ! | GTTGTGGACCCACCTTTTCT+TGG | - | tig0024162:68085-68104 | Msa1415040:CDS | 50.0% |
| GATAGGCTTGCAATGGAGCT+TGG | - | tig0024162:66955-66974 | Msa1415040:intron | 50.0% | |
| GGTTCCAGAATCGAAGAGCT+AGG | - | tig0024162:67004-67023 | Msa1415040:intron | 50.0% | |
| TCCAGAATCGAAGAGCTAGG+TGG | - | tig0024162:67007-67026 | Msa1415040:intron | 50.0% | |
| ! | TCCACCTAGCTCTTCGATTC+TGG | + | tig0024162:67011-67030 | None:intergenic | 50.0% |
| GCGGAAATCAAGGGAGGTAA+TGG | - | tig0024162:67855-67874 | Msa1415040:CDS | 50.0% | |
| GGCTTCGAGAGCCAATTGAA+AGG | - | tig0024162:68014-68033 | Msa1415040:intron | 50.0% | |
| GTCTCAGTCAGTGGAAGTTG+TGG | - | tig0024162:68069-68088 | Msa1415040:CDS | 50.0% | |
| ! | GTTGTGGACCCACCTTTTCT+TGG | - | tig0024162:68085-68104 | Msa1415040:CDS | 50.0% |
| CTACGCTTGCGTCTTGGCTT+TGG | + | tig0024162:66805-66824 | None:intergenic | 55.0% | |
| CTGGCATGCAACGGTTCTTC+AGG | - | tig0024162:67548-67567 | Msa1415040:intron | 55.0% | |
| CTACGCTTGCGTCTTGGCTT+TGG | + | tig0024162:66805-66824 | None:intergenic | 55.0% | |
| CTGGCATGCAACGGTTCTTC+AGG | - | tig0024162:67548-67567 | Msa1415040:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024162 | gene | 66467 | 68275 | 66467 | ID=Msa1415040;Name=Msa1415040 |
| tig0024162 | mRNA | 66467 | 68275 | 66467 | ID=Msa1415040-mRNA-1;Parent=Msa1415040;Name=Msa1415040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=157|1|1|1|1|1|3|68|215 |
| tig0024162 | exon | 66467 | 66777 | 66467 | ID=Msa1415040-mRNA-1:exon:22127;Parent=Msa1415040-mRNA-1 |
| tig0024162 | exon | 67626 | 67951 | 67626 | ID=Msa1415040-mRNA-1:exon:22126;Parent=Msa1415040-mRNA-1 |
| tig0024162 | exon | 68040 | 68275 | 68040 | ID=Msa1415040-mRNA-1:exon:22125;Parent=Msa1415040-mRNA-1 |
| tig0024162 | five_prime_UTR | 68119 | 68275 | 68119 | ID=Msa1415040-mRNA-1:five_prime_utr;Parent=Msa1415040-mRNA-1 |
| tig0024162 | CDS | 68040 | 68118 | 68040 | ID=Msa1415040-mRNA-1:cds;Parent=Msa1415040-mRNA-1 |
| tig0024162 | CDS | 67626 | 67951 | 67626 | ID=Msa1415040-mRNA-1:cds;Parent=Msa1415040-mRNA-1 |
| tig0024162 | CDS | 66535 | 66777 | 66535 | ID=Msa1415040-mRNA-1:cds;Parent=Msa1415040-mRNA-1 |
| tig0024162 | three_prime_UTR | 66467 | 66534 | 66467 | ID=Msa1415040-mRNA-1:three_prime_utr;Parent=Msa1415040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
