Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798900 | XP_003611946.1 | 90.090 | 222 | 14 | 2 | 1 | 215 | 1 | 221 | 3.48e-130 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798900 | sp|O23208|ATB40_ARATH | 53.774 | 212 | 90 | 7 | 7 | 215 | 10 | 216 | 1.34e-61 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798900 | G7KC72 | 90.090 | 222 | 14 | 2 | 1 | 215 | 1 | 221 | 1.66e-130 | 375 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0798900 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0798890 | Msa0798900 | 0.916027 | 2.916391e-85 | -8.615850e-47 |
| Msa0798900 | Msa1228040 | 0.811839 | 5.727008e-51 | -8.615850e-47 |
| Msa0798900 | Msa1327640 | 0.807479 | 4.953962e-50 | -8.615850e-47 |
| Msa0798900 | Msa1415040 | 0.886226 | 4.111374e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798900 | MtrunA17_Chr5g0403691 | 90.090 | 222 | 14 | 2 | 1 | 215 | 1 | 221 | 3.20e-134 | 375 |
| Msa0798900 | MtrunA17_Chr5g0403701 | 82.160 | 213 | 32 | 2 | 1 | 213 | 1 | 207 | 9.16e-115 | 326 |
| Msa0798900 | MtrunA17_Chr4g0060031 | 43.200 | 125 | 61 | 2 | 41 | 155 | 79 | 203 | 1.27e-23 | 96.3 |
| Msa0798900 | MtrunA17_Chr6g0450991 | 48.214 | 112 | 47 | 3 | 54 | 157 | 67 | 175 | 4.55e-22 | 91.3 |
| Msa0798900 | MtrunA17_Chr3g0123691 | 60.811 | 74 | 29 | 0 | 54 | 127 | 60 | 133 | 9.50e-22 | 90.9 |
| Msa0798900 | MtrunA17_Chr7g0265521 | 35.465 | 172 | 93 | 3 | 48 | 205 | 57 | 224 | 9.91e-22 | 89.4 |
| Msa0798900 | MtrunA17_Chr8g0381741 | 52.475 | 101 | 39 | 1 | 54 | 145 | 54 | 154 | 2.39e-21 | 89.7 |
| Msa0798900 | MtrunA17_Chr6g0453021 | 50.495 | 101 | 50 | 0 | 43 | 143 | 85 | 185 | 7.75e-21 | 87.8 |
| Msa0798900 | MtrunA17_Chr8g0362151 | 42.609 | 115 | 61 | 1 | 46 | 160 | 69 | 178 | 3.05e-20 | 86.3 |
| Msa0798900 | MtrunA17_Chr8g0362751 | 48.598 | 107 | 48 | 2 | 54 | 153 | 89 | 195 | 4.13e-20 | 85.9 |
| Msa0798900 | MtrunA17_Chr1g0179581 | 51.807 | 83 | 40 | 0 | 54 | 136 | 28 | 110 | 6.78e-20 | 81.3 |
| Msa0798900 | MtrunA17_Chr5g0416391 | 43.478 | 115 | 60 | 1 | 46 | 160 | 69 | 178 | 7.09e-20 | 85.5 |
| Msa0798900 | MtrunA17_Chr5g0415941 | 59.155 | 71 | 29 | 0 | 54 | 124 | 87 | 157 | 1.27e-19 | 85.1 |
| Msa0798900 | MtrunA17_Chr3g0127511 | 39.716 | 141 | 68 | 3 | 56 | 196 | 40 | 163 | 4.57e-19 | 82.4 |
| Msa0798900 | MtrunA17_Chr3g0119291 | 47.368 | 95 | 50 | 0 | 51 | 145 | 56 | 150 | 1.07e-17 | 79.0 |
| Msa0798900 | MtrunA17_Chr8g0346251 | 44.860 | 107 | 56 | 1 | 58 | 164 | 45 | 148 | 1.15e-17 | 79.0 |
| Msa0798900 | MtrunA17_Chr7g0217111 | 47.778 | 90 | 47 | 0 | 54 | 143 | 80 | 169 | 1.48e-15 | 73.6 |
| Msa0798900 | MtrunA17_Chr2g0308611 | 35.616 | 146 | 88 | 2 | 34 | 173 | 180 | 325 | 3.39e-14 | 70.1 |
| Msa0798900 | MtrunA17_Chr4g0055851 | 42.727 | 110 | 57 | 2 | 39 | 143 | 106 | 214 | 3.86e-14 | 69.7 |
| Msa0798900 | MtrunA17_Chr8g0335131 | 45.263 | 95 | 47 | 1 | 54 | 143 | 146 | 240 | 1.22e-13 | 68.6 |
| Msa0798900 | MtrunA17_Chr4g0044091 | 53.731 | 67 | 31 | 0 | 54 | 120 | 65 | 131 | 2.21e-13 | 66.2 |
| Msa0798900 | MtrunA17_Chr4g0054421 | 45.263 | 95 | 47 | 1 | 54 | 143 | 127 | 221 | 3.27e-13 | 67.0 |
| Msa0798900 | MtrunA17_Chr1g0175651 | 38.053 | 113 | 65 | 1 | 34 | 141 | 134 | 246 | 2.60e-12 | 64.7 |
| Msa0798900 | MtrunA17_Chr5g0400781 | 45.263 | 95 | 47 | 1 | 54 | 143 | 123 | 217 | 3.56e-12 | 63.9 |
| Msa0798900 | MtrunA17_Chr7g0258831 | 37.500 | 112 | 65 | 1 | 35 | 141 | 141 | 252 | 5.14e-12 | 63.5 |
| Msa0798900 | MtrunA17_Chr5g0399491 | 43.158 | 95 | 49 | 1 | 54 | 143 | 136 | 230 | 6.36e-12 | 63.5 |
| Msa0798900 | MtrunA17_Chr1g0151971 | 45.349 | 86 | 47 | 0 | 54 | 139 | 130 | 215 | 8.92e-12 | 63.2 |
| Msa0798900 | MtrunA17_Chr3g0135331 | 43.836 | 73 | 41 | 0 | 52 | 124 | 143 | 215 | 3.04e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798900 | AT4G36740.2 | 53.302 | 212 | 92 | 6 | 7 | 215 | 10 | 217 | 5.16e-63 | 195 |
| Msa0798900 | AT4G36740.1 | 53.774 | 212 | 90 | 7 | 7 | 215 | 10 | 216 | 1.36e-62 | 194 |
| Msa0798900 | AT2G18550.1 | 47.788 | 226 | 101 | 8 | 1 | 215 | 1 | 220 | 1.90e-62 | 194 |
| Msa0798900 | AT5G66700.1 | 45.333 | 225 | 104 | 7 | 5 | 215 | 9 | 228 | 1.37e-44 | 149 |
| Msa0798900 | AT3G01470.1 | 49.505 | 101 | 44 | 1 | 50 | 143 | 64 | 164 | 1.13e-23 | 95.9 |
| Msa0798900 | AT1G69780.1 | 38.816 | 152 | 83 | 3 | 2 | 143 | 23 | 174 | 1.22e-22 | 93.2 |
| Msa0798900 | AT4G40060.1 | 57.317 | 82 | 35 | 0 | 43 | 124 | 48 | 129 | 9.52e-22 | 90.9 |
| Msa0798900 | AT2G22430.1 | 64.789 | 71 | 25 | 0 | 54 | 124 | 62 | 132 | 1.68e-21 | 90.5 |
| Msa0798900 | AT1G26960.1 | 44.355 | 124 | 64 | 1 | 54 | 177 | 71 | 189 | 1.88e-21 | 89.4 |
| Msa0798900 | AT5G03790.1 | 50.000 | 94 | 46 | 1 | 46 | 139 | 70 | 162 | 7.30e-21 | 87.4 |
| Msa0798900 | AT5G65310.2 | 65.152 | 66 | 23 | 0 | 54 | 119 | 54 | 119 | 1.29e-20 | 87.8 |
| Msa0798900 | AT5G65310.1 | 58.108 | 74 | 31 | 0 | 46 | 119 | 64 | 137 | 1.36e-20 | 88.2 |
| Msa0798900 | AT5G03790.2 | 48.936 | 94 | 47 | 1 | 46 | 139 | 70 | 162 | 1.93e-20 | 85.5 |
| Msa0798900 | AT2G46680.1 | 41.732 | 127 | 67 | 1 | 48 | 174 | 26 | 145 | 2.96e-20 | 86.3 |
| Msa0798900 | AT2G46680.2 | 47.748 | 111 | 51 | 1 | 48 | 151 | 26 | 136 | 1.14e-19 | 84.7 |
| Msa0798900 | AT2G36610.1 | 46.296 | 108 | 50 | 2 | 46 | 145 | 63 | 170 | 1.72e-19 | 82.8 |
| Msa0798900 | AT3G01220.1 | 50.000 | 86 | 43 | 0 | 39 | 124 | 72 | 157 | 1.09e-18 | 82.4 |
| Msa0798900 | AT5G53980.1 | 44.444 | 99 | 55 | 0 | 45 | 143 | 2 | 100 | 1.65e-18 | 79.3 |
| Msa0798900 | AT5G15150.1 | 53.750 | 80 | 37 | 0 | 41 | 120 | 102 | 181 | 2.04e-18 | 82.0 |
| Msa0798900 | AT3G61890.1 | 41.176 | 119 | 64 | 1 | 57 | 169 | 33 | 151 | 1.07e-17 | 79.0 |
| Msa0798900 | AT1G27045.1 | 42.735 | 117 | 54 | 2 | 52 | 155 | 66 | 182 | 6.06e-17 | 76.6 |
| Msa0798900 | AT1G27045.2 | 36.054 | 147 | 79 | 2 | 52 | 191 | 15 | 153 | 6.90e-17 | 75.5 |
| Msa0798900 | AT1G27045.5 | 36.054 | 147 | 79 | 2 | 52 | 191 | 23 | 161 | 8.05e-17 | 75.5 |
| Msa0798900 | AT1G27045.3 | 36.054 | 147 | 79 | 2 | 52 | 191 | 23 | 161 | 8.05e-17 | 75.5 |
| Msa0798900 | AT1G27045.4 | 57.353 | 68 | 29 | 0 | 52 | 119 | 66 | 133 | 1.88e-16 | 75.9 |
| Msa0798900 | AT2G22800.1 | 45.161 | 93 | 46 | 1 | 54 | 141 | 113 | 205 | 1.94e-13 | 67.8 |
| Msa0798900 | AT4G16780.1 | 40.741 | 108 | 54 | 2 | 41 | 143 | 121 | 223 | 6.80e-13 | 66.6 |
| Msa0798900 | AT4G37790.1 | 44.086 | 93 | 47 | 1 | 54 | 141 | 126 | 218 | 1.78e-12 | 65.1 |
| Msa0798900 | AT4G17460.1 | 40.385 | 104 | 57 | 1 | 45 | 143 | 126 | 229 | 3.48e-12 | 64.3 |
| Msa0798900 | AT2G01430.1 | 37.008 | 127 | 65 | 2 | 54 | 179 | 139 | 251 | 3.93e-12 | 64.3 |
| Msa0798900 | AT5G47370.1 | 37.931 | 116 | 67 | 1 | 33 | 143 | 109 | 224 | 1.08e-11 | 63.2 |
| Msa0798900 | AT5G06710.1 | 39.048 | 105 | 64 | 0 | 35 | 139 | 171 | 275 | 1.90e-11 | 62.8 |
| Msa0798900 | AT3G60390.1 | 40.000 | 105 | 58 | 1 | 44 | 143 | 152 | 256 | 2.61e-11 | 62.4 |
Find 47 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTGTTGAGGAATTATT+TGG | 0.121044 | 5_3:-11896538 | None:intergenic |
| CTTCTATATGTATTTATAAT+AGG | 0.161447 | 5_3:-11896337 | None:intergenic |
| TCCACCTAGCTCTTCGATTC+TGG | 0.214518 | 5_3:-11896863 | None:intergenic |
| TGATGAACAGATGAAAATTT+TGG | 0.274813 | 5_3:+11896743 | Msa0798900:CDS |
| TTCTATATGTATTTATAATA+GGG | 0.309158 | 5_3:-11896336 | None:intergenic |
| TAAGCATCATTTGGTCTTGA+TGG | 0.320716 | 5_3:-11896484 | None:intergenic |
| TACTCATCATTCTATTAATT+AGG | 0.321798 | 5_3:+11896407 | Msa0798900:five_prime_UTR |
| GAACCATACTGCAACTTGTC+TGG | 0.324204 | 5_3:-11896841 | None:intergenic |
| CTACGCTTGCGTCTTGGCTT+TGG | 0.328958 | 5_3:-11896657 | None:intergenic |
| TTGTAGTAACATGTTTCATT+AGG | 0.345702 | 5_3:-11898009 | None:intergenic |
| CTGCATGTTACCCTTTCAAT+TGG | 0.385057 | 5_3:-11897880 | None:intergenic |
| ATCCCAGACAAGTTGCAGTA+TGG | 0.391231 | 5_3:+11896838 | Msa0798900:CDS |
| TTCTTACTACGCTTGCGTCT+TGG | 0.426044 | 5_3:-11896663 | None:intergenic |
| ACCTTGTTGAGGAATTATTT+GGG | 0.434434 | 5_3:-11896537 | None:intergenic |
| AGAGGTATACCTTGGTTTCA+AGG | 0.439510 | 5_3:-11896959 | None:intergenic |
| ACTGAGACATAAGCATCATT+TGG | 0.463969 | 5_3:-11896493 | None:intergenic |
| CGTAGTAAGAAGAACAAAAG+TGG | 0.482800 | 5_3:+11896675 | Msa0798900:CDS |
| GATAGGCTTGCAATGGAGCT+TGG | 0.487004 | 5_3:+11896810 | Msa0798900:CDS |
| AAGGAGATACTTCTCAAGAA+TGG | 0.497377 | 5_3:-11896940 | None:intergenic |
| TAAACTTGAGTCAGAGAAGA+AGG | 0.499532 | 5_3:+11896788 | Msa0798900:CDS |
| GTCTCAGTCAGTGGAAGTTG+TGG | 0.499926 | 5_3:+11897924 | Msa0798900:CDS |
| GGTGAATTTGGTGTTGATAA+CGG | 0.514478 | 5_3:+11897961 | Msa0798900:CDS |
| ACACCAAATTCACCAAGAAA+AGG | 0.517876 | 5_3:-11897952 | None:intergenic |
| AACCATACTGCAACTTGTCT+GGG | 0.517968 | 5_3:-11896840 | None:intergenic |
| TTGAGTCAGAGAAGAAGGAT+AGG | 0.537241 | 5_3:+11896793 | Msa0798900:CDS |
| ATTTGGGTGTATTCACAAGC+GGG | 0.547719 | 5_3:-11896521 | None:intergenic |
| GCTTCGAGAGCCAATTGAAA+GGG | 0.560533 | 5_3:+11897870 | Msa0798900:CDS |
| CCAAATTCACCAAGAAAAGG+TGG | 0.566129 | 5_3:-11897949 | None:intergenic |
| GTTACTACAATGGCATGGAA+TGG | 0.566673 | 5_3:+11898022 | Msa0798900:CDS |
| TCTATATGTATTTATAATAG+GGG | 0.566682 | 5_3:-11896335 | None:intergenic |
| GGCTTCGAGAGCCAATTGAA+AGG | 0.569118 | 5_3:+11897869 | Msa0798900:CDS |
| AATCTGAGAAAGAAAATCAA+AGG | 0.580369 | 5_3:+11897848 | Msa0798900:CDS |
| AACTTCCACTGACTGAGACA+TGG | 0.581765 | 5_3:-11897920 | None:intergenic |
| TTCATCCATGTCTCAGTCAG+TGG | 0.582296 | 5_3:+11897915 | Msa0798900:CDS |
| GAAGAAGGATAGGCTTGCAA+TGG | 0.584642 | 5_3:+11896803 | Msa0798900:CDS |
| AATGAAACATGTTACTACAA+TGG | 0.596613 | 5_3:+11898012 | Msa0798900:CDS |
| TGTATAGGTGTTGAAGCTAA+CGG | 0.597602 | 5_3:+11897813 | Msa0798900:intron |
| GGTTCCAGAATCGAAGAGCT+AGG | 0.598892 | 5_3:+11896859 | Msa0798900:CDS |
| TATTTGGGTGTATTCACAAG+CGG | 0.604533 | 5_3:-11896522 | None:intergenic |
| ACTTGATACTAACCTTGTTG+AGG | 0.606044 | 5_3:-11896548 | None:intergenic |
| GAGATACTTCTCAAGAATGG+TGG | 0.612212 | 5_3:-11896937 | None:intergenic |
| AACATGTTACTACAATGGCA+TGG | 0.616964 | 5_3:+11898017 | Msa0798900:CDS |
| GAAGTATCTCCTTGAAACCA+AGG | 0.625666 | 5_3:+11896950 | Msa0798900:CDS |
| CAAATTCACCAAGAAAAGGT+GGG | 0.668413 | 5_3:-11897948 | None:intergenic |
| TTTGGGTGTATTCACAAGCG+GGG | 0.669434 | 5_3:-11896520 | None:intergenic |
| ACCCAAATAATTCCTCAACA+AGG | 0.682907 | 5_3:+11896536 | Msa0798900:CDS |
| TCCAGAATCGAAGAGCTAGG+TGG | 0.707809 | 5_3:+11896862 | Msa0798900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATATGTATTTATAATA+GGG | - | chr5_3:11896339-11896358 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTTAAAATCAG+TGG | + | chr5_3:11897065-11897084 | Msa0798900:intron | 10.0% |
| !! | TTCAAAAAATATAATATTGT+TGG | - | chr5_3:11897140-11897159 | None:intergenic | 10.0% |
| !! | TAAACAAAGTAATTAAATAA+AGG | - | chr5_3:11897330-11897349 | None:intergenic | 10.0% |
| !! | TTCTATATGTATTTATAATA+GGG | - | chr5_3:11896339-11896358 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTTAAAATCAG+TGG | + | chr5_3:11897065-11897084 | Msa0798900:intron | 10.0% |
| !! | TTCAAAAAATATAATATTGT+TGG | - | chr5_3:11897140-11897159 | None:intergenic | 10.0% |
| !! | TAAACAAAGTAATTAAATAA+AGG | - | chr5_3:11897330-11897349 | None:intergenic | 10.0% |
| !! | TCTATATGTATTTATAATAG+GGG | - | chr5_3:11896338-11896357 | None:intergenic | 15.0% |
| !! | CTTCTATATGTATTTATAAT+AGG | - | chr5_3:11896340-11896359 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTATGTTTTTTT+AGG | + | chr5_3:11896624-11896643 | Msa0798900:intron | 15.0% |
| !!! | TTTTTTGGTATGTTTTTTTA+GGG | + | chr5_3:11896625-11896644 | Msa0798900:intron | 15.0% |
| !! | AAAAAAAAATGCATAAAAAG+AGG | - | chr5_3:11896990-11897009 | None:intergenic | 15.0% |
| !! | CTATAGTAATATAATATTGT+TGG | - | chr5_3:11897168-11897187 | None:intergenic | 15.0% |
| !!! | ACTTTATCATTTTTCATTAA+GGG | - | chr5_3:11897451-11897470 | None:intergenic | 15.0% |
| !!! | TACTTTATCATTTTTCATTA+AGG | - | chr5_3:11897452-11897471 | None:intergenic | 15.0% |
| !!! | AACCAATTAAATTTGTTATT+TGG | + | chr5_3:11897688-11897707 | Msa0798900:intron | 15.0% |
| !! | TCTATATGTATTTATAATAG+GGG | - | chr5_3:11896338-11896357 | None:intergenic | 15.0% |
| !! | CTTCTATATGTATTTATAAT+AGG | - | chr5_3:11896340-11896359 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTATGTTTTTTT+AGG | + | chr5_3:11896624-11896643 | Msa0798900:intron | 15.0% |
| !!! | TTTTTTGGTATGTTTTTTTA+GGG | + | chr5_3:11896625-11896644 | Msa0798900:intron | 15.0% |
| !! | AAAAAAAAATGCATAAAAAG+AGG | - | chr5_3:11896990-11897009 | None:intergenic | 15.0% |
| !! | CTATAGTAATATAATATTGT+TGG | - | chr5_3:11897168-11897187 | None:intergenic | 15.0% |
| !!! | ACTTTATCATTTTTCATTAA+GGG | - | chr5_3:11897451-11897470 | None:intergenic | 15.0% |
| !!! | TACTTTATCATTTTTCATTA+AGG | - | chr5_3:11897452-11897471 | None:intergenic | 15.0% |
| !!! | AACCAATTAAATTTGTTATT+TGG | + | chr5_3:11897688-11897707 | Msa0798900:intron | 15.0% |
| !! | TACTCATCATTCTATTAATT+AGG | + | chr5_3:11896407-11896426 | Msa0798900:five_prime_UTR | 20.0% |
| !!! | TTTTTGGTATGTTTTTTTAG+GGG | + | chr5_3:11896626-11896645 | Msa0798900:intron | 20.0% |
| !!! | AAAATTTTGGAGGAAAATTT+TGG | + | chr5_3:11896756-11896775 | Msa0798900:CDS | 20.0% |
| !!! | AAAATTTAAAATCAGTGGAT+TGG | + | chr5_3:11897070-11897089 | Msa0798900:intron | 20.0% |
| !!! | CTTTATCATTTTTCATTAAG+GGG | - | chr5_3:11897450-11897469 | None:intergenic | 20.0% |
| !!! | CAATTAAATTTGTTATTTGG+CGG | + | chr5_3:11897691-11897710 | Msa0798900:intron | 20.0% |
| !! | TACTCATCATTCTATTAATT+AGG | + | chr5_3:11896407-11896426 | Msa0798900:five_prime_UTR | 20.0% |
| !!! | TTTTTGGTATGTTTTTTTAG+GGG | + | chr5_3:11896626-11896645 | Msa0798900:intron | 20.0% |
| !!! | AAAATTTTGGAGGAAAATTT+TGG | + | chr5_3:11896756-11896775 | Msa0798900:CDS | 20.0% |
| !!! | AAAATTTAAAATCAGTGGAT+TGG | + | chr5_3:11897070-11897089 | Msa0798900:intron | 20.0% |
| !!! | CTTTATCATTTTTCATTAAG+GGG | - | chr5_3:11897450-11897469 | None:intergenic | 20.0% |
| !!! | CAATTAAATTTGTTATTTGG+CGG | + | chr5_3:11897691-11897710 | Msa0798900:intron | 20.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | + | chr5_3:11896712-11896731 | Msa0798900:CDS | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | - | chr5_3:11896716-11896735 | None:intergenic | 25.0% |
| !! | TGATGAACAGATGAAAATTT+TGG | + | chr5_3:11896743-11896762 | Msa0798900:CDS | 25.0% |
| ! | TTCTCTCTTTCAACATTTAA+GGG | - | chr5_3:11897377-11897396 | None:intergenic | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+AGG | - | chr5_3:11897378-11897397 | None:intergenic | 25.0% |
| ! | CGCCAAATAACAAATTTAAT+TGG | - | chr5_3:11897693-11897712 | None:intergenic | 25.0% |
| ! | GTTCCATTAATTGTTTGTAT+AGG | + | chr5_3:11897798-11897817 | Msa0798900:intron | 25.0% |
| ! | ACACCTATACAAACAATTAA+TGG | - | chr5_3:11897804-11897823 | None:intergenic | 25.0% |
| ! | AATCTGAGAAAGAAAATCAA+AGG | + | chr5_3:11897848-11897867 | Msa0798900:CDS | 25.0% |
| ! | TTGTAGTAACATGTTTCATT+AGG | - | chr5_3:11898012-11898031 | None:intergenic | 25.0% |
| ! | AATGAAACATGTTACTACAA+TGG | + | chr5_3:11898012-11898031 | Msa0798900:CDS | 25.0% |
| ! | ACCAAATATTGAACAAAAAG+AGG | + | chr5_3:11896712-11896731 | Msa0798900:CDS | 25.0% |
| !! | TCCTCTTTTTGTTCAATATT+TGG | - | chr5_3:11896716-11896735 | None:intergenic | 25.0% |
| !! | TGATGAACAGATGAAAATTT+TGG | + | chr5_3:11896743-11896762 | Msa0798900:CDS | 25.0% |
| ! | TTCTCTCTTTCAACATTTAA+GGG | - | chr5_3:11897377-11897396 | None:intergenic | 25.0% |
| ! | ATTCTCTCTTTCAACATTTA+AGG | - | chr5_3:11897378-11897397 | None:intergenic | 25.0% |
| ! | CGCCAAATAACAAATTTAAT+TGG | - | chr5_3:11897693-11897712 | None:intergenic | 25.0% |
| ! | GTTCCATTAATTGTTTGTAT+AGG | + | chr5_3:11897798-11897817 | Msa0798900:intron | 25.0% |
| ! | ACACCTATACAAACAATTAA+TGG | - | chr5_3:11897804-11897823 | None:intergenic | 25.0% |
| ! | AATCTGAGAAAGAAAATCAA+AGG | + | chr5_3:11897848-11897867 | Msa0798900:CDS | 25.0% |
| ! | TTGTAGTAACATGTTTCATT+AGG | - | chr5_3:11898012-11898031 | None:intergenic | 25.0% |
| ! | AATGAAACATGTTACTACAA+TGG | + | chr5_3:11898012-11898031 | Msa0798900:CDS | 25.0% |
| !!! | GATGTGTTATCCTTGTTTTT+TGG | - | chr5_3:11896377-11896396 | None:intergenic | 30.0% |
| ACCTTGTTGAGGAATTATTT+GGG | - | chr5_3:11896540-11896559 | None:intergenic | 30.0% | |
| AACCTTGTTGAGGAATTATT+TGG | - | chr5_3:11896541-11896560 | None:intergenic | 30.0% | |
| ! | TGAACAGATGAAAATTTTGG+AGG | + | chr5_3:11896746-11896765 | Msa0798900:CDS | 30.0% |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_3:11897215-11897234 | Msa0798900:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_3:11897216-11897235 | Msa0798900:intron | 30.0% | |
| TTGAAAGAGAGAATAAGTAC+TGG | + | chr5_3:11897384-11897403 | Msa0798900:intron | 30.0% | |
| !! | TGAGAACTTGATAATGTGAA+CGG | - | chr5_3:11897490-11897509 | None:intergenic | 30.0% |
| ! | TGGAAATATGGTCACATTTT+TGG | - | chr5_3:11897611-11897630 | None:intergenic | 30.0% |
| TAGATAAATAGCAATGCTCA+TGG | - | chr5_3:11897631-11897650 | None:intergenic | 30.0% | |
| !!! | GATGTGTTATCCTTGTTTTT+TGG | - | chr5_3:11896377-11896396 | None:intergenic | 30.0% |
| ACCTTGTTGAGGAATTATTT+GGG | - | chr5_3:11896540-11896559 | None:intergenic | 30.0% | |
| AACCTTGTTGAGGAATTATT+TGG | - | chr5_3:11896541-11896560 | None:intergenic | 30.0% | |
| ! | TGAACAGATGAAAATTTTGG+AGG | + | chr5_3:11896746-11896765 | Msa0798900:CDS | 30.0% |
| AACACTAGTAACGTCAATTT+AGG | + | chr5_3:11897215-11897234 | Msa0798900:intron | 30.0% | |
| ACACTAGTAACGTCAATTTA+GGG | + | chr5_3:11897216-11897235 | Msa0798900:intron | 30.0% | |
| TTGAAAGAGAGAATAAGTAC+TGG | + | chr5_3:11897384-11897403 | Msa0798900:intron | 30.0% | |
| !! | TGAGAACTTGATAATGTGAA+CGG | - | chr5_3:11897490-11897509 | None:intergenic | 30.0% |
| ! | TGGAAATATGGTCACATTTT+TGG | - | chr5_3:11897611-11897630 | None:intergenic | 30.0% |
| TAGATAAATAGCAATGCTCA+TGG | - | chr5_3:11897631-11897650 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGGAGACAACGTTA+AGG | - | chr5_3:11896363-11896382 | None:intergenic | 35.0% |
| AACGTTGTCTCCAAAAAACA+AGG | + | chr5_3:11896364-11896383 | Msa0798900:five_prime_UTR | 35.0% | |
| !! | TAAGCATCATTTGGTCTTGA+TGG | - | chr5_3:11896487-11896506 | None:intergenic | 35.0% |
| ACTGAGACATAAGCATCATT+TGG | - | chr5_3:11896496-11896515 | None:intergenic | 35.0% | |
| TATTTGGGTGTATTCACAAG+CGG | - | chr5_3:11896525-11896544 | None:intergenic | 35.0% | |
| ACCCAAATAATTCCTCAACA+AGG | + | chr5_3:11896536-11896555 | Msa0798900:CDS | 35.0% | |
| ACTTGATACTAACCTTGTTG+AGG | - | chr5_3:11896551-11896570 | None:intergenic | 35.0% | |
| CGTAGTAAGAAGAACAAAAG+TGG | + | chr5_3:11896675-11896694 | Msa0798900:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_3:11896788-11896807 | Msa0798900:CDS | 35.0% | |
| AAGGAGATACTTCTCAAGAA+TGG | - | chr5_3:11896943-11896962 | None:intergenic | 35.0% | |
| GCATAAAAAGAGGAAGAAAG+AGG | - | chr5_3:11896980-11896999 | None:intergenic | 35.0% | |
| ACATGAAATGAAACATCGTG+TGG | - | chr5_3:11897521-11897540 | None:intergenic | 35.0% | |
| ACACGATGTTTCATTTCATG+TGG | + | chr5_3:11897520-11897539 | Msa0798900:intron | 35.0% | |
| TAGCAATGCTCATGGAAATA+TGG | - | chr5_3:11897623-11897642 | None:intergenic | 35.0% | |
| !! | TTGTTATTTGGCGGAAATCA+AGG | + | chr5_3:11897700-11897719 | Msa0798900:intron | 35.0% |
| ! | TGTTATTTGGCGGAAATCAA+GGG | + | chr5_3:11897701-11897720 | Msa0798900:intron | 35.0% |
| !! | TGTATAGGTGTTGAAGCTAA+CGG | + | chr5_3:11897813-11897832 | Msa0798900:intron | 35.0% |
| CAAATTCACCAAGAAAAGGT+GGG | - | chr5_3:11897951-11897970 | None:intergenic | 35.0% | |
| ACACCAAATTCACCAAGAAA+AGG | - | chr5_3:11897955-11897974 | None:intergenic | 35.0% | |
| !! | GGTGAATTTGGTGTTGATAA+CGG | + | chr5_3:11897961-11897980 | Msa0798900:CDS | 35.0% |
| AACATGTTACTACAATGGCA+TGG | + | chr5_3:11898017-11898036 | Msa0798900:CDS | 35.0% | |
| ! | TATAATAGGGGTGAAGTGTT+GGG | - | chr5_3:11896326-11896345 | None:intergenic | 35.0% |
| TTATAATAGGGGTGAAGTGT+TGG | - | chr5_3:11896327-11896346 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGAGACAACGTTA+AGG | - | chr5_3:11896363-11896382 | None:intergenic | 35.0% |
| AACGTTGTCTCCAAAAAACA+AGG | + | chr5_3:11896364-11896383 | Msa0798900:five_prime_UTR | 35.0% | |
| !! | TAAGCATCATTTGGTCTTGA+TGG | - | chr5_3:11896487-11896506 | None:intergenic | 35.0% |
| ACTGAGACATAAGCATCATT+TGG | - | chr5_3:11896496-11896515 | None:intergenic | 35.0% | |
| TATTTGGGTGTATTCACAAG+CGG | - | chr5_3:11896525-11896544 | None:intergenic | 35.0% | |
| ACCCAAATAATTCCTCAACA+AGG | + | chr5_3:11896536-11896555 | Msa0798900:CDS | 35.0% | |
| ACTTGATACTAACCTTGTTG+AGG | - | chr5_3:11896551-11896570 | None:intergenic | 35.0% | |
| CGTAGTAAGAAGAACAAAAG+TGG | + | chr5_3:11896675-11896694 | Msa0798900:CDS | 35.0% | |
| TAAACTTGAGTCAGAGAAGA+AGG | + | chr5_3:11896788-11896807 | Msa0798900:CDS | 35.0% | |
| AAGGAGATACTTCTCAAGAA+TGG | - | chr5_3:11896943-11896962 | None:intergenic | 35.0% | |
| GCATAAAAAGAGGAAGAAAG+AGG | - | chr5_3:11896980-11896999 | None:intergenic | 35.0% | |
| ACATGAAATGAAACATCGTG+TGG | - | chr5_3:11897521-11897540 | None:intergenic | 35.0% | |
| ACACGATGTTTCATTTCATG+TGG | + | chr5_3:11897520-11897539 | Msa0798900:intron | 35.0% | |
| TAGCAATGCTCATGGAAATA+TGG | - | chr5_3:11897623-11897642 | None:intergenic | 35.0% | |
| !! | TTGTTATTTGGCGGAAATCA+AGG | + | chr5_3:11897700-11897719 | Msa0798900:intron | 35.0% |
| ! | TGTTATTTGGCGGAAATCAA+GGG | + | chr5_3:11897701-11897720 | Msa0798900:intron | 35.0% |
| !! | TGTATAGGTGTTGAAGCTAA+CGG | + | chr5_3:11897813-11897832 | Msa0798900:intron | 35.0% |
| CAAATTCACCAAGAAAAGGT+GGG | - | chr5_3:11897951-11897970 | None:intergenic | 35.0% | |
| ACACCAAATTCACCAAGAAA+AGG | - | chr5_3:11897955-11897974 | None:intergenic | 35.0% | |
| !! | GGTGAATTTGGTGTTGATAA+CGG | + | chr5_3:11897961-11897980 | Msa0798900:CDS | 35.0% |
| AACATGTTACTACAATGGCA+TGG | + | chr5_3:11898017-11898036 | Msa0798900:CDS | 35.0% | |
| ATTTGGGTGTATTCACAAGC+GGG | - | chr5_3:11896524-11896543 | None:intergenic | 40.0% | |
| TTGAGTCAGAGAAGAAGGAT+AGG | + | chr5_3:11896793-11896812 | Msa0798900:CDS | 40.0% | |
| AACCATACTGCAACTTGTCT+GGG | - | chr5_3:11896843-11896862 | None:intergenic | 40.0% | |
| GAGATACTTCTCAAGAATGG+TGG | - | chr5_3:11896940-11896959 | None:intergenic | 40.0% | |
| ! | GAAGTATCTCCTTGAAACCA+AGG | + | chr5_3:11896950-11896969 | Msa0798900:CDS | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_3:11896962-11896981 | None:intergenic | 40.0% |
| ! | AGGAAGAAAGAGGTATACCT+TGG | - | chr5_3:11896970-11896989 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_3:11897244-11897263 | Msa0798900:intron | 40.0% | |
| !! | GAATAAGTACTGGCATGCAA+CGG | + | chr5_3:11897394-11897413 | Msa0798900:intron | 40.0% |
| !! | ACTTGATAATGTGAACGGCT+TGG | - | chr5_3:11897485-11897504 | None:intergenic | 40.0% |
| CTGCATGTTACCCTTTCAAT+TGG | - | chr5_3:11897883-11897902 | None:intergenic | 40.0% | |
| CCAAATTCACCAAGAAAAGG+TGG | - | chr5_3:11897952-11897971 | None:intergenic | 40.0% | |
| ! | CCACCTTTTCTTGGTGAATT+TGG | + | chr5_3:11897949-11897968 | Msa0798900:CDS | 40.0% |
| GTTACTACAATGGCATGGAA+TGG | + | chr5_3:11898022-11898041 | Msa0798900:CDS | 40.0% | |
| ATTTGGGTGTATTCACAAGC+GGG | - | chr5_3:11896524-11896543 | None:intergenic | 40.0% | |
| TTGAGTCAGAGAAGAAGGAT+AGG | + | chr5_3:11896793-11896812 | Msa0798900:CDS | 40.0% | |
| AACCATACTGCAACTTGTCT+GGG | - | chr5_3:11896843-11896862 | None:intergenic | 40.0% | |
| GAGATACTTCTCAAGAATGG+TGG | - | chr5_3:11896940-11896959 | None:intergenic | 40.0% | |
| ! | GAAGTATCTCCTTGAAACCA+AGG | + | chr5_3:11896950-11896969 | Msa0798900:CDS | 40.0% |
| ! | AGAGGTATACCTTGGTTTCA+AGG | - | chr5_3:11896962-11896981 | None:intergenic | 40.0% |
| ! | AGGAAGAAAGAGGTATACCT+TGG | - | chr5_3:11896970-11896989 | None:intergenic | 40.0% |
| ATGCTACCATGTTTCTTCTC+TGG | + | chr5_3:11897244-11897263 | Msa0798900:intron | 40.0% | |
| !! | GAATAAGTACTGGCATGCAA+CGG | + | chr5_3:11897394-11897413 | Msa0798900:intron | 40.0% |
| !! | ACTTGATAATGTGAACGGCT+TGG | - | chr5_3:11897485-11897504 | None:intergenic | 40.0% |
| CTGCATGTTACCCTTTCAAT+TGG | - | chr5_3:11897883-11897902 | None:intergenic | 40.0% | |
| CCAAATTCACCAAGAAAAGG+TGG | - | chr5_3:11897952-11897971 | None:intergenic | 40.0% | |
| ! | CCACCTTTTCTTGGTGAATT+TGG | + | chr5_3:11897949-11897968 | Msa0798900:CDS | 40.0% |
| GTTACTACAATGGCATGGAA+TGG | + | chr5_3:11898022-11898041 | Msa0798900:CDS | 40.0% | |
| TTTGGGTGTATTCACAAGCG+GGG | - | chr5_3:11896523-11896542 | None:intergenic | 45.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | - | chr5_3:11896666-11896685 | None:intergenic | 45.0% | |
| GAAGAAGGATAGGCTTGCAA+TGG | + | chr5_3:11896803-11896822 | Msa0798900:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTA+TGG | + | chr5_3:11896838-11896857 | Msa0798900:CDS | 45.0% | |
| GAACCATACTGCAACTTGTC+TGG | - | chr5_3:11896844-11896863 | None:intergenic | 45.0% | |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_3:11897247-11897266 | Msa0798900:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_3:11897253-11897272 | None:intergenic | 45.0% | |
| TGTTTCTTCTCTGGTGGTCT+TGG | + | chr5_3:11897253-11897272 | Msa0798900:intron | 45.0% | |
| TATTTGGCGGAAATCAAGGG+AGG | + | chr5_3:11897704-11897723 | Msa0798900:intron | 45.0% | |
| GCTTCGAGAGCCAATTGAAA+GGG | + | chr5_3:11897870-11897889 | Msa0798900:CDS | 45.0% | |
| TTCATCCATGTCTCAGTCAG+TGG | + | chr5_3:11897915-11897934 | Msa0798900:CDS | 45.0% | |
| ! | AACTTCCACTGACTGAGACA+TGG | - | chr5_3:11897923-11897942 | None:intergenic | 45.0% |
| TTTGGGTGTATTCACAAGCG+GGG | - | chr5_3:11896523-11896542 | None:intergenic | 45.0% | |
| TTCTTACTACGCTTGCGTCT+TGG | - | chr5_3:11896666-11896685 | None:intergenic | 45.0% | |
| GAAGAAGGATAGGCTTGCAA+TGG | + | chr5_3:11896803-11896822 | Msa0798900:CDS | 45.0% | |
| ATCCCAGACAAGTTGCAGTA+TGG | + | chr5_3:11896838-11896857 | Msa0798900:CDS | 45.0% | |
| GAACCATACTGCAACTTGTC+TGG | - | chr5_3:11896844-11896863 | None:intergenic | 45.0% | |
| CTACCATGTTTCTTCTCTGG+TGG | + | chr5_3:11897247-11897266 | Msa0798900:intron | 45.0% | |
| AGACCACCAGAGAAGAAACA+TGG | - | chr5_3:11897253-11897272 | None:intergenic | 45.0% | |
| TGTTTCTTCTCTGGTGGTCT+TGG | + | chr5_3:11897253-11897272 | Msa0798900:intron | 45.0% | |
| TATTTGGCGGAAATCAAGGG+AGG | + | chr5_3:11897704-11897723 | Msa0798900:intron | 45.0% | |
| GCTTCGAGAGCCAATTGAAA+GGG | + | chr5_3:11897870-11897889 | Msa0798900:CDS | 45.0% | |
| TTCATCCATGTCTCAGTCAG+TGG | + | chr5_3:11897915-11897934 | Msa0798900:CDS | 45.0% | |
| ! | AACTTCCACTGACTGAGACA+TGG | - | chr5_3:11897923-11897942 | None:intergenic | 45.0% |
| !!! | TAGTTAATTATAATATTTTT+TGG | + | chr5_3:11896610-11896629 | Msa0798900:intron | 5.0% |
| !!! | TAGTTAATTATAATATTTTT+TGG | + | chr5_3:11896610-11896629 | Msa0798900:intron | 5.0% |
| GATAGGCTTGCAATGGAGCT+TGG | + | chr5_3:11896810-11896829 | Msa0798900:CDS | 50.0% | |
| GGTTCCAGAATCGAAGAGCT+AGG | + | chr5_3:11896859-11896878 | Msa0798900:CDS | 50.0% | |
| TCCAGAATCGAAGAGCTAGG+TGG | + | chr5_3:11896862-11896881 | Msa0798900:CDS | 50.0% | |
| ! | TCCACCTAGCTCTTCGATTC+TGG | - | chr5_3:11896866-11896885 | None:intergenic | 50.0% |
| GCGGAAATCAAGGGAGGTAA+TGG | + | chr5_3:11897710-11897729 | Msa0798900:intron | 50.0% | |
| GGCTTCGAGAGCCAATTGAA+AGG | + | chr5_3:11897869-11897888 | Msa0798900:CDS | 50.0% | |
| GTCTCAGTCAGTGGAAGTTG+TGG | + | chr5_3:11897924-11897943 | Msa0798900:CDS | 50.0% | |
| ! | GTTGTGGACCCACCTTTTCT+TGG | + | chr5_3:11897940-11897959 | Msa0798900:CDS | 50.0% |
| GATAGGCTTGCAATGGAGCT+TGG | + | chr5_3:11896810-11896829 | Msa0798900:CDS | 50.0% | |
| GGTTCCAGAATCGAAGAGCT+AGG | + | chr5_3:11896859-11896878 | Msa0798900:CDS | 50.0% | |
| TCCAGAATCGAAGAGCTAGG+TGG | + | chr5_3:11896862-11896881 | Msa0798900:CDS | 50.0% | |
| ! | TCCACCTAGCTCTTCGATTC+TGG | - | chr5_3:11896866-11896885 | None:intergenic | 50.0% |
| GCGGAAATCAAGGGAGGTAA+TGG | + | chr5_3:11897710-11897729 | Msa0798900:intron | 50.0% | |
| GGCTTCGAGAGCCAATTGAA+AGG | + | chr5_3:11897869-11897888 | Msa0798900:CDS | 50.0% | |
| GTCTCAGTCAGTGGAAGTTG+TGG | + | chr5_3:11897924-11897943 | Msa0798900:CDS | 50.0% | |
| ! | GTTGTGGACCCACCTTTTCT+TGG | + | chr5_3:11897940-11897959 | Msa0798900:CDS | 50.0% |
| CTACGCTTGCGTCTTGGCTT+TGG | - | chr5_3:11896660-11896679 | None:intergenic | 55.0% | |
| CTGGCATGCAACGGTTCTTC+AGG | + | chr5_3:11897403-11897422 | Msa0798900:intron | 55.0% | |
| CTACGCTTGCGTCTTGGCTT+TGG | - | chr5_3:11896660-11896679 | None:intergenic | 55.0% | |
| CTGGCATGCAACGGTTCTTC+AGG | + | chr5_3:11897403-11897422 | Msa0798900:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 11896325 | 11898129 | 11896325 | ID=Msa0798900;Name=Msa0798900 |
| chr5_3 | mRNA | 11896325 | 11898129 | 11896325 | ID=Msa0798900-mRNA-1;Parent=Msa0798900;Name=Msa0798900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=154|1|1|1|1|1|3|67|215 |
| chr5_3 | exon | 11896325 | 11896557 | 11896325 | ID=Msa0798900-mRNA-1:exon:4872;Parent=Msa0798900-mRNA-1 |
| chr5_3 | exon | 11896646 | 11896971 | 11896646 | ID=Msa0798900-mRNA-1:exon:4873;Parent=Msa0798900-mRNA-1 |
| chr5_3 | exon | 11897820 | 11898129 | 11897820 | ID=Msa0798900-mRNA-1:exon:4874;Parent=Msa0798900-mRNA-1 |
| chr5_3 | five_prime_UTR | 11896325 | 11896478 | 11896325 | ID=Msa0798900-mRNA-1:five_prime_utr;Parent=Msa0798900-mRNA-1 |
| chr5_3 | CDS | 11896479 | 11896557 | 11896479 | ID=Msa0798900-mRNA-1:cds;Parent=Msa0798900-mRNA-1 |
| chr5_3 | CDS | 11896646 | 11896971 | 11896646 | ID=Msa0798900-mRNA-1:cds;Parent=Msa0798900-mRNA-1 |
| chr5_3 | CDS | 11897820 | 11898062 | 11897820 | ID=Msa0798900-mRNA-1:cds;Parent=Msa0798900-mRNA-1 |
| chr5_3 | three_prime_UTR | 11898063 | 11898129 | 11898063 | ID=Msa0798900-mRNA-1:three_prime_utr;Parent=Msa0798900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
