AlfalfaGEDB | Msa0799220

M. sativa cultivar zhongmu-4 / Msa0799220

KEGG: K21630
GO: GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0799220	XP_003612004.2	90.377	239	12	5	1	232	71	305	4.08e-144	415

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0799220	sp\|Q8LC79\|GAT18_ARATH	41.281	281	104	10	5	232	9	281	1.64e-47	161

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0799220	A0A396HLL4	90.377	239	12	5	1	232	71	305	1.95e-144	415

TFs/TRs:

Gene ID	Type	Classification
Msa0799220	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0689720	Msa0799220	0.849259	3.625930e-60	-8.615850e-47
Msa0716820	Msa0799220	0.820666	6.081062e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0799220	MtrunA17_Chr5g0404131	90.377	239	12	5	1	232	71	305	3.75e-148	415
Msa0799220	MtrunA17_Chr8g0373231	55.556	243	82	8	1	232	1	228	3.27e-59	186
Msa0799220	MtrunA17_Chr1g0151461	38.889	90	52	2	89	177	155	242	2.45e-14	70.9
Msa0799220	MtrunA17_Chr7g0271861	56.250	48	19	1	119	166	18	63	2.75e-13	64.7
Msa0799220	MtrunA17_Chr2g0326771	40.000	60	36	0	96	155	189	248	8.24e-13	66.6
Msa0799220	MtrunA17_Chr4g0068031	67.568	37	12	0	123	159	30	66	1.06e-12	63.5
Msa0799220	MtrunA17_Chr4g0071301	69.048	42	12	1	111	152	181	221	1.40e-12	65.9
Msa0799220	MtrunA17_Chr4g0028961	32.143	84	52	1	72	155	186	264	1.08e-11	63.2
Msa0799220	MtrunA17_Chr1g0213161	62.857	35	13	0	121	155	150	184	1.84e-11	62.0
Msa0799220	MtrunA17_Chr5g0404981	38.571	70	41	1	88	155	263	332	5.76e-11	61.6
Msa0799220	MtrunA17_Chr1g0199671	62.162	37	14	0	119	155	238	274	6.40e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0799220	AT3G50870.1	41.281	281	104	10	5	232	9	281	1.66e-48	161
Msa0799220	AT4G36620.1	43.891	221	83	10	27	232	3	197	7.21e-39	134
Msa0799220	AT2G18380.1	41.304	230	93	8	19	230	2	207	1.69e-36	128
Msa0799220	AT5G56860.1	49.462	93	33	3	64	156	185	263	5.78e-17	79.3
Msa0799220	AT5G49300.1	53.731	67	27	2	98	162	11	75	4.49e-15	70.1
Msa0799220	AT4G26150.1	63.830	47	16	1	107	153	184	229	1.16e-13	69.7
Msa0799220	AT1G08010.2	45.070	71	33	2	105	170	203	272	1.38e-12	66.2
Msa0799220	AT1G08010.1	45.070	71	33	2	105	170	203	272	1.38e-12	66.2
Msa0799220	AT1G08010.3	45.070	71	33	2	105	170	203	272	1.38e-12	66.2
Msa0799220	AT3G54810.1	37.234	94	54	1	106	194	212	305	4.33e-12	65.1
Msa0799220	AT3G54810.2	37.234	94	54	1	106	194	212	305	4.33e-12	65.1
Msa0799220	AT5G26930.1	67.568	37	12	0	123	159	26	62	4.39e-12	61.6
Msa0799220	AT3G06740.1	71.429	35	10	0	125	159	43	77	7.18e-12	61.6
Msa0799220	AT3G20750.1	70.588	34	10	0	127	160	163	196	1.66e-11	62.0
Msa0799220	AT2G45050.1	36.585	82	45	2	74	155	137	211	7.10e-11	60.8
Msa0799220	AT4G34680.1	50.980	51	23	1	107	155	162	212	8.06e-11	60.8
Msa0799220	AT4G34680.2	50.980	51	23	1	107	155	162	212	8.06e-11	60.8

Find 73 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCAATCATGATTCTGAAAA+TGG	0.202815	5_3:+12315541	Msa0799220:CDS
GGAGTGAAACAATAGGTTTC+AGG	0.229794	5_3:-12314916	None:intergenic
GTTGGAGTTGTTGTTATTAT+TGG	0.243633	5_3:-12315130	None:intergenic
CTTCATTTCATTAATTTCAT+TGG	0.284470	5_3:+12314542	Msa0799220:five_prime_UTR
GAAGAAGAAGATGAAGAATT+AGG	0.286532	5_3:-12314937	None:intergenic
ATGGCATTCCATTTCTCTCT+TGG	0.336081	5_3:+12315560	Msa0799220:CDS
GAGTGAATGGTAATAATAAA+AGG	0.354102	5_3:-12314728	None:intergenic
GAGAGAAACACTGCATCTTC+TGG	0.356763	5_3:-12315483	None:intergenic
TTCATTTCATTAATTTCATT+GGG	0.375952	5_3:+12314543	Msa0799220:five_prime_UTR
AGTGTTTGAAGATAATAAAA+TGG	0.376545	5_3:-12314674	None:intergenic
AACGCCATCTATCGGCATAA+TGG	0.385803	5_3:+12315399	Msa0799220:CDS
TTTATGACACCCTTCATGTA+AGG	0.390850	5_3:-12314432	None:intergenic
CAGGGAGTGAGTGTGATTGT+AGG	0.390962	5_3:-12314512	None:intergenic
AATGAAAATGAATGATTTGA+AGG	0.402129	5_3:-12314769	None:intergenic
CGGAACTCGTTAGTCATTGC+TGG	0.406108	5_3:-12315505	None:intergenic
TGTTCATGTGGTATGTTTCA+TGG	0.414708	5_3:+12314847	Msa0799220:CDS
CCACCTCCACACCGCTTTGG+AGG	0.424846	5_3:+12315193	Msa0799220:CDS
TAGGTTTCAGGTTCATCATA+AGG	0.424993	5_3:-12314904	None:intergenic
AATGAAATGAAGGGTAAGTC+AGG	0.429512	5_3:-12314531	None:intergenic
ATGCCGATAGATGGCGTTGC+CGG	0.430815	5_3:-12315394	None:intergenic
TTAGAGTAGAGAAGAGTGAA+TGG	0.442320	5_3:-12314741	None:intergenic
TAGAGTCTCCAAGAGAGAAA+TGG	0.442835	5_3:-12315568	None:intergenic
CAATGAAATTAATGAAATGA+AGG	0.448951	5_3:-12314541	None:intergenic
ATAGTAAAGGAGATAAATAG+AGG	0.453860	5_3:-12314572	None:intergenic
AGAATTAGGAGTGAAACAAT+AGG	0.458450	5_3:-12314923	None:intergenic
AGGGAGTGAGTGTGATTGTA+GGG	0.460006	5_3:-12314511	None:intergenic
AGAAGAGCAACTGCTGCAGC+CGG	0.462808	5_3:+12315367	Msa0799220:CDS
ACACCACCTCCACACCGCTT+TGG	0.463073	5_3:+12315190	Msa0799220:CDS
GATTCCATTATGCCGATAGA+TGG	0.464364	5_3:-12315403	None:intergenic
CCTCCAAAGCGGTGTGGAGG+TGG	0.470303	5_3:-12315193	None:intergenic
TGAGTACTGTTGTACTGTTT+AGG	0.483115	5_3:-12315078	None:intergenic
CACTGCATCTTCTGGTTCTG+TGG	0.485352	5_3:-12315475	None:intergenic
AGCAAGAAGAGAATCATTGT+TGG	0.486549	5_3:-12315148	None:intergenic
GATTGGTTTCATCAATGAAA+CGG	0.487226	5_3:-12315525	None:intergenic
AACTGCTGCAGCCGGCACAC+CGG	0.491074	5_3:+12315375	Msa0799220:CDS
AGATGGCGTTGCCGGTGTGC+CGG	0.497703	5_3:-12315386	None:intergenic
ATGAAAATGAATGATTTGAA+GGG	0.497940	5_3:-12314768	None:intergenic
ACGTTGTCGTCAATTGCAAA+TGG	0.500974	5_3:-12314624	None:intergenic
ATCTCAAGGGCAACACGTGA+TGG	0.509206	5_3:+12314819	Msa0799220:CDS
TCCACACCGCTTTGGAGGAA+CGG	0.515774	5_3:+12315198	Msa0799220:CDS
GTTGATTGTACTCTTTCACT+TGG	0.527724	5_3:+12314961	Msa0799220:CDS
ATGATGCATCGTTCATCTCA+AGG	0.533388	5_3:+12314805	Msa0799220:CDS
AATCTCCTCCCCTTACATGA+AGG	0.537474	5_3:+12314422	None:intergenic
TAAAGGAGATAAATAGAGGG+AGG	0.538887	5_3:-12314568	None:intergenic
CAGAACGACGTTCATGATGT+CGG	0.540322	5_3:-12315026	None:intergenic
ATACAAAATATATATAGTAA+AGG	0.543734	5_3:-12314585	None:intergenic
ACACCGGCAACGCCATCTAT+CGG	0.547655	5_3:+12315391	Msa0799220:CDS
TTGACGACAACGTGGACTGC+AGG	0.547708	5_3:+12314634	Msa0799220:five_prime_UTR
TGAAAATGAATGATTTGAAG+GGG	0.547996	5_3:-12314767	None:intergenic
TAGTAAAGGAGATAAATAGA+GGG	0.561536	5_3:-12314571	None:intergenic
ACCATGAGTTGTTGTGATGA+TGG	0.569537	5_3:-12315444	None:intergenic
ACCATCATCACAACAACTCA+TGG	0.576219	5_3:+12315443	Msa0799220:CDS
TTATGACACCCTTCATGTAA+GGG	0.576621	5_3:-12314431	None:intergenic
TCTCAAGGGCAACACGTGAT+GGG	0.577571	5_3:+12314820	Msa0799220:CDS
AAAGGAGATAAATAGAGGGA+GGG	0.578878	5_3:-12314567	None:intergenic
ATCTCCTCCCCTTACATGAA+GGG	0.582931	5_3:+12314423	None:intergenic
CAGTCACTATGCAATGCATG+TGG	0.582954	5_3:+12315322	Msa0799220:intron
CAGTACTCAGTCTCAAACAA+AGG	0.584934	5_3:+12315092	Msa0799220:CDS
TCTTCAGTGAAACGAGTGGA+TGG	0.587900	5_3:-12314988	None:intergenic
AATGAAATTAATGAAATGAA+GGG	0.589066	5_3:-12314540	None:intergenic
TGATGCATCGTTCATCTCAA+GGG	0.590177	5_3:+12314806	Msa0799220:CDS
GTTCCTCCAAAGCGGTGTGG+AGG	0.595180	5_3:-12315196	None:intergenic
ATGAAATGAAGGGTAAGTCA+GGG	0.605058	5_3:-12314530	None:intergenic
GAACGGTCCACGAGGCCCAA+AGG	0.609147	5_3:+12315215	Msa0799220:CDS
ACCGTTCCTCCAAAGCGGTG+TGG	0.617219	5_3:-12315199	None:intergenic
TTCATCTTCAGTGAAACGAG+TGG	0.627984	5_3:-12314992	None:intergenic
ATGTGGGATCAGATTCAAGA+AGG	0.634149	5_3:+12315339	Msa0799220:CDS
AGTCACTATGCAATGCATGT+GGG	0.668102	5_3:+12315323	Msa0799220:intron
ATTTGCAATTGACGACAACG+TGG	0.678136	5_3:+12314626	Msa0799220:five_prime_UTR
CGTGGACCGTTCCTCCAAAG+CGG	0.688334	5_3:-12315204	None:intergenic
ATGAGTTGTTGTGATGATGG+TGG	0.688340	5_3:-12315441	None:intergenic
CTTTGGAGGAACGGTCCACG+AGG	0.702547	5_3:+12315207	Msa0799220:CDS
GTGATGGGACACTGTTCATG+TGG	0.723745	5_3:+12314835	Msa0799220:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATACAAAATATATATAGTAA+AGG	-	chr5_3:12314588-12314607	None:intergenic	10.0%
!!	ATACAAAATATATATAGTAA+AGG	-	chr5_3:12314588-12314607	None:intergenic	10.0%
!!	AATGAAATTAATGAAATGAA+GGG	-	chr5_3:12314543-12314562	None:intergenic	15.0%
!!	TTCATTTCATTAATTTCATT+GGG	+	chr5_3:12314543-12314562	Msa0799220:five_prime_UTR	15.0%
!!	TAAAATGTTATATTTCATGT+TGG	-	chr5_3:12315287-12315306	None:intergenic	15.0%
!!!	ATATAACATTTTATGTTGAA+TGG	+	chr5_3:12315294-12315313	Msa0799220:intron	15.0%
!!	AATGAAATTAATGAAATGAA+GGG	-	chr5_3:12314543-12314562	None:intergenic	15.0%
!!	TTCATTTCATTAATTTCATT+GGG	+	chr5_3:12314543-12314562	Msa0799220:five_prime_UTR	15.0%
!!	TAAAATGTTATATTTCATGT+TGG	-	chr5_3:12315287-12315306	None:intergenic	15.0%
!!!	ATATAACATTTTATGTTGAA+TGG	+	chr5_3:12315294-12315313	Msa0799220:intron	15.0%
!!	CAATGAAATTAATGAAATGA+AGG	-	chr5_3:12314544-12314563	None:intergenic	20.0%
!!	CTTCATTTCATTAATTTCAT+TGG	+	chr5_3:12314542-12314561	Msa0799220:five_prime_UTR	20.0%
!!	AGTGTTTGAAGATAATAAAA+TGG	-	chr5_3:12314677-12314696	None:intergenic	20.0%
!!	ATGAAAATGAATGATTTGAA+GGG	-	chr5_3:12314771-12314790	None:intergenic	20.0%
!!	AATGAAAATGAATGATTTGA+AGG	-	chr5_3:12314772-12314791	None:intergenic	20.0%
!!	TTATATTTCATGTTGGTATT+TGG	-	chr5_3:12315280-12315299	None:intergenic	20.0%
!!	CAATGAAATTAATGAAATGA+AGG	-	chr5_3:12314544-12314563	None:intergenic	20.0%
!!	CTTCATTTCATTAATTTCAT+TGG	+	chr5_3:12314542-12314561	Msa0799220:five_prime_UTR	20.0%
!!	AGTGTTTGAAGATAATAAAA+TGG	-	chr5_3:12314677-12314696	None:intergenic	20.0%
!!	ATGAAAATGAATGATTTGAA+GGG	-	chr5_3:12314771-12314790	None:intergenic	20.0%
!!	AATGAAAATGAATGATTTGA+AGG	-	chr5_3:12314772-12314791	None:intergenic	20.0%
!!	TTATATTTCATGTTGGTATT+TGG	-	chr5_3:12315280-12315299	None:intergenic	20.0%
!	TAGTAAAGGAGATAAATAGA+GGG	-	chr5_3:12314574-12314593	None:intergenic	25.0%
!	ATAGTAAAGGAGATAAATAG+AGG	-	chr5_3:12314575-12314594	None:intergenic	25.0%
!	GAGTGAATGGTAATAATAAA+AGG	-	chr5_3:12314731-12314750	None:intergenic	25.0%
!	TGAAAATGAATGATTTGAAG+GGG	-	chr5_3:12314770-12314789	None:intergenic	25.0%
!	TTCTGTCAAAAATTTCTGTT+GGG	+	chr5_3:12315044-12315063	Msa0799220:CDS	25.0%
!!!	TGTAGAGTATTTTTACCTTT+GGG	-	chr5_3:12315233-12315252	None:intergenic	25.0%
!!!	ATGTAGAGTATTTTTACCTT+TGG	-	chr5_3:12315234-12315253	None:intergenic	25.0%
!	TAGTAAAGGAGATAAATAGA+GGG	-	chr5_3:12314574-12314593	None:intergenic	25.0%
!	ATAGTAAAGGAGATAAATAG+AGG	-	chr5_3:12314575-12314594	None:intergenic	25.0%
!	GAGTGAATGGTAATAATAAA+AGG	-	chr5_3:12314731-12314750	None:intergenic	25.0%
!	TGAAAATGAATGATTTGAAG+GGG	-	chr5_3:12314770-12314789	None:intergenic	25.0%
!	TTCTGTCAAAAATTTCTGTT+GGG	+	chr5_3:12315044-12315063	Msa0799220:CDS	25.0%
!!!	TGTAGAGTATTTTTACCTTT+GGG	-	chr5_3:12315233-12315252	None:intergenic	25.0%
!!!	ATGTAGAGTATTTTTACCTT+TGG	-	chr5_3:12315234-12315253	None:intergenic	25.0%
	AGAATTAGGAGTGAAACAAT+AGG	-	chr5_3:12314926-12314945	None:intergenic	30.0%
	GAAGAAGAAGATGAAGAATT+AGG	-	chr5_3:12314940-12314959	None:intergenic	30.0%
	GTTCTGTCAAAAATTTCTGT+TGG	+	chr5_3:12315043-12315062	Msa0799220:CDS	30.0%
!	GTTGGAGTTGTTGTTATTAT+TGG	-	chr5_3:12315133-12315152	None:intergenic	30.0%
!!	GATTGGTTTCATCAATGAAA+CGG	-	chr5_3:12315528-12315547	None:intergenic	30.0%
!	ACCAATCATGATTCTGAAAA+TGG	+	chr5_3:12315541-12315560	Msa0799220:CDS	30.0%
	AGAATTAGGAGTGAAACAAT+AGG	-	chr5_3:12314926-12314945	None:intergenic	30.0%
	GAAGAAGAAGATGAAGAATT+AGG	-	chr5_3:12314940-12314959	None:intergenic	30.0%
	GTTCTGTCAAAAATTTCTGT+TGG	+	chr5_3:12315043-12315062	Msa0799220:CDS	30.0%
!	GTTGGAGTTGTTGTTATTAT+TGG	-	chr5_3:12315133-12315152	None:intergenic	30.0%
!!	GATTGGTTTCATCAATGAAA+CGG	-	chr5_3:12315528-12315547	None:intergenic	30.0%
!	ACCAATCATGATTCTGAAAA+TGG	+	chr5_3:12315541-12315560	Msa0799220:CDS	30.0%
	ATGAAATGAAGGGTAAGTCA+GGG	-	chr5_3:12314533-12314552	None:intergenic	35.0%
	AATGAAATGAAGGGTAAGTC+AGG	-	chr5_3:12314534-12314553	None:intergenic	35.0%
	AAAGGAGATAAATAGAGGGA+GGG	-	chr5_3:12314570-12314589	None:intergenic	35.0%
	TAAAGGAGATAAATAGAGGG+AGG	-	chr5_3:12314571-12314590	None:intergenic	35.0%
	TTAGAGTAGAGAAGAGTGAA+TGG	-	chr5_3:12314744-12314763	None:intergenic	35.0%
	TGTTCATGTGGTATGTTTCA+TGG	+	chr5_3:12314847-12314866	Msa0799220:CDS	35.0%
!!	TAGGTTTCAGGTTCATCATA+AGG	-	chr5_3:12314907-12314926	None:intergenic	35.0%
	GTTGATTGTACTCTTTCACT+TGG	+	chr5_3:12314961-12314980	Msa0799220:CDS	35.0%
!	TGAGTACTGTTGTACTGTTT+AGG	-	chr5_3:12315081-12315100	None:intergenic	35.0%
	AGCAAGAAGAGAATCATTGT+TGG	-	chr5_3:12315151-12315170	None:intergenic	35.0%
!!	GCCATTTTCAGAATCATGAT+TGG	-	chr5_3:12315545-12315564	None:intergenic	35.0%
	ATGAAATGAAGGGTAAGTCA+GGG	-	chr5_3:12314533-12314552	None:intergenic	35.0%
	AATGAAATGAAGGGTAAGTC+AGG	-	chr5_3:12314534-12314553	None:intergenic	35.0%
	AAAGGAGATAAATAGAGGGA+GGG	-	chr5_3:12314570-12314589	None:intergenic	35.0%
	TAAAGGAGATAAATAGAGGG+AGG	-	chr5_3:12314571-12314590	None:intergenic	35.0%
	TTAGAGTAGAGAAGAGTGAA+TGG	-	chr5_3:12314744-12314763	None:intergenic	35.0%
	TGTTCATGTGGTATGTTTCA+TGG	+	chr5_3:12314847-12314866	Msa0799220:CDS	35.0%
!!	TAGGTTTCAGGTTCATCATA+AGG	-	chr5_3:12314907-12314926	None:intergenic	35.0%
	GTTGATTGTACTCTTTCACT+TGG	+	chr5_3:12314961-12314980	Msa0799220:CDS	35.0%
!	TGAGTACTGTTGTACTGTTT+AGG	-	chr5_3:12315081-12315100	None:intergenic	35.0%
	AGCAAGAAGAGAATCATTGT+TGG	-	chr5_3:12315151-12315170	None:intergenic	35.0%
!!	GCCATTTTCAGAATCATGAT+TGG	-	chr5_3:12315545-12315564	None:intergenic	35.0%
	ACGTTGTCGTCAATTGCAAA+TGG	-	chr5_3:12314627-12314646	None:intergenic	40.0%
	ATTTGCAATTGACGACAACG+TGG	+	chr5_3:12314626-12314645	Msa0799220:five_prime_UTR	40.0%
	ATGATGCATCGTTCATCTCA+AGG	+	chr5_3:12314805-12314824	Msa0799220:CDS	40.0%
	TGATGCATCGTTCATCTCAA+GGG	+	chr5_3:12314806-12314825	Msa0799220:CDS	40.0%
	GGAGTGAAACAATAGGTTTC+AGG	-	chr5_3:12314919-12314938	None:intergenic	40.0%
	TTCATCTTCAGTGAAACGAG+TGG	-	chr5_3:12314995-12315014	None:intergenic	40.0%
	CAGTACTCAGTCTCAAACAA+AGG	+	chr5_3:12315092-12315111	Msa0799220:CDS	40.0%
	AGTCACTATGCAATGCATGT+GGG	+	chr5_3:12315323-12315342	Msa0799220:intron	40.0%
	ATGTGGGATCAGATTCAAGA+AGG	+	chr5_3:12315339-12315358	Msa0799220:CDS	40.0%
	GATTCCATTATGCCGATAGA+TGG	-	chr5_3:12315406-12315425	None:intergenic	40.0%
!!	ATGAGTTGTTGTGATGATGG+TGG	-	chr5_3:12315444-12315463	None:intergenic	40.0%
	ACCATCATCACAACAACTCA+TGG	+	chr5_3:12315443-12315462	Msa0799220:CDS	40.0%
	ACCATGAGTTGTTGTGATGA+TGG	-	chr5_3:12315447-12315466	None:intergenic	40.0%
	ATGGCATTCCATTTCTCTCT+TGG	+	chr5_3:12315560-12315579	Msa0799220:CDS	40.0%
	TAGAGTCTCCAAGAGAGAAA+TGG	-	chr5_3:12315571-12315590	None:intergenic	40.0%
	ACGTTGTCGTCAATTGCAAA+TGG	-	chr5_3:12314627-12314646	None:intergenic	40.0%
	ATTTGCAATTGACGACAACG+TGG	+	chr5_3:12314626-12314645	Msa0799220:five_prime_UTR	40.0%
	ATGATGCATCGTTCATCTCA+AGG	+	chr5_3:12314805-12314824	Msa0799220:CDS	40.0%
	TGATGCATCGTTCATCTCAA+GGG	+	chr5_3:12314806-12314825	Msa0799220:CDS	40.0%
	GGAGTGAAACAATAGGTTTC+AGG	-	chr5_3:12314919-12314938	None:intergenic	40.0%
	TTCATCTTCAGTGAAACGAG+TGG	-	chr5_3:12314995-12315014	None:intergenic	40.0%
	CAGTACTCAGTCTCAAACAA+AGG	+	chr5_3:12315092-12315111	Msa0799220:CDS	40.0%
	AGTCACTATGCAATGCATGT+GGG	+	chr5_3:12315323-12315342	Msa0799220:intron	40.0%
	ATGTGGGATCAGATTCAAGA+AGG	+	chr5_3:12315339-12315358	Msa0799220:CDS	40.0%
	GATTCCATTATGCCGATAGA+TGG	-	chr5_3:12315406-12315425	None:intergenic	40.0%
!!	ATGAGTTGTTGTGATGATGG+TGG	-	chr5_3:12315444-12315463	None:intergenic	40.0%
	ACCATCATCACAACAACTCA+TGG	+	chr5_3:12315443-12315462	Msa0799220:CDS	40.0%
	ACCATGAGTTGTTGTGATGA+TGG	-	chr5_3:12315447-12315466	None:intergenic	40.0%
	ATGGCATTCCATTTCTCTCT+TGG	+	chr5_3:12315560-12315579	Msa0799220:CDS	40.0%
	TAGAGTCTCCAAGAGAGAAA+TGG	-	chr5_3:12315571-12315590	None:intergenic	40.0%
	AGGGAGTGAGTGTGATTGTA+GGG	-	chr5_3:12314514-12314533	None:intergenic	45.0%
	TCTTCAGTGAAACGAGTGGA+TGG	-	chr5_3:12314991-12315010	None:intergenic	45.0%
	CAGAACGACGTTCATGATGT+CGG	-	chr5_3:12315029-12315048	None:intergenic	45.0%
!	ATTTTTACCTTTGGGCCTCG+TGG	-	chr5_3:12315225-12315244	None:intergenic	45.0%
	CAGTCACTATGCAATGCATG+TGG	+	chr5_3:12315322-12315341	Msa0799220:intron	45.0%
	AACGCCATCTATCGGCATAA+TGG	+	chr5_3:12315399-12315418	Msa0799220:CDS	45.0%
	GAGAGAAACACTGCATCTTC+TGG	-	chr5_3:12315486-12315505	None:intergenic	45.0%
	AGGGAGTGAGTGTGATTGTA+GGG	-	chr5_3:12314514-12314533	None:intergenic	45.0%
	TCTTCAGTGAAACGAGTGGA+TGG	-	chr5_3:12314991-12315010	None:intergenic	45.0%
	CAGAACGACGTTCATGATGT+CGG	-	chr5_3:12315029-12315048	None:intergenic	45.0%
!	ATTTTTACCTTTGGGCCTCG+TGG	-	chr5_3:12315225-12315244	None:intergenic	45.0%
	CAGTCACTATGCAATGCATG+TGG	+	chr5_3:12315322-12315341	Msa0799220:intron	45.0%
	AACGCCATCTATCGGCATAA+TGG	+	chr5_3:12315399-12315418	Msa0799220:CDS	45.0%
	GAGAGAAACACTGCATCTTC+TGG	-	chr5_3:12315486-12315505	None:intergenic	45.0%
	CAGGGAGTGAGTGTGATTGT+AGG	-	chr5_3:12314515-12314534	None:intergenic	50.0%
	ATCTCAAGGGCAACACGTGA+TGG	+	chr5_3:12314819-12314838	Msa0799220:CDS	50.0%
	TCTCAAGGGCAACACGTGAT+GGG	+	chr5_3:12314820-12314839	Msa0799220:CDS	50.0%
!	GTGATGGGACACTGTTCATG+TGG	+	chr5_3:12314835-12314854	Msa0799220:CDS	50.0%
!!	CACTGCATCTTCTGGTTCTG+TGG	-	chr5_3:12315478-12315497	None:intergenic	50.0%
	CGGAACTCGTTAGTCATTGC+TGG	-	chr5_3:12315508-12315527	None:intergenic	50.0%
	CAGGGAGTGAGTGTGATTGT+AGG	-	chr5_3:12314515-12314534	None:intergenic	50.0%
	ATCTCAAGGGCAACACGTGA+TGG	+	chr5_3:12314819-12314838	Msa0799220:CDS	50.0%
	TCTCAAGGGCAACACGTGAT+GGG	+	chr5_3:12314820-12314839	Msa0799220:CDS	50.0%
!	GTGATGGGACACTGTTCATG+TGG	+	chr5_3:12314835-12314854	Msa0799220:CDS	50.0%
!!	CACTGCATCTTCTGGTTCTG+TGG	-	chr5_3:12315478-12315497	None:intergenic	50.0%
	CGGAACTCGTTAGTCATTGC+TGG	-	chr5_3:12315508-12315527	None:intergenic	50.0%
!	TTGACGACAACGTGGACTGC+AGG	+	chr5_3:12314634-12314653	Msa0799220:five_prime_UTR	55.0%
!!	TCCACACCGCTTTGGAGGAA+CGG	+	chr5_3:12315198-12315217	Msa0799220:CDS	55.0%
	AGAAGAGCAACTGCTGCAGC+CGG	+	chr5_3:12315367-12315386	Msa0799220:CDS	55.0%
	ACACCGGCAACGCCATCTAT+CGG	+	chr5_3:12315391-12315410	Msa0799220:CDS	55.0%
	ATGCCGATAGATGGCGTTGC+CGG	-	chr5_3:12315397-12315416	None:intergenic	55.0%
!	TTGACGACAACGTGGACTGC+AGG	+	chr5_3:12314634-12314653	Msa0799220:five_prime_UTR	55.0%
!!	TCCACACCGCTTTGGAGGAA+CGG	+	chr5_3:12315198-12315217	Msa0799220:CDS	55.0%
	AGAAGAGCAACTGCTGCAGC+CGG	+	chr5_3:12315367-12315386	Msa0799220:CDS	55.0%
	ACACCGGCAACGCCATCTAT+CGG	+	chr5_3:12315391-12315410	Msa0799220:CDS	55.0%
	ATGCCGATAGATGGCGTTGC+CGG	-	chr5_3:12315397-12315416	None:intergenic	55.0%
	ACACCACCTCCACACCGCTT+TGG	+	chr5_3:12315190-12315209	Msa0799220:CDS	60.0%
	GTTCCTCCAAAGCGGTGTGG+AGG	-	chr5_3:12315199-12315218	None:intergenic	60.0%
	ACCGTTCCTCCAAAGCGGTG+TGG	-	chr5_3:12315202-12315221	None:intergenic	60.0%
	CGTGGACCGTTCCTCCAAAG+CGG	-	chr5_3:12315207-12315226	None:intergenic	60.0%
!	CTTTGGAGGAACGGTCCACG+AGG	+	chr5_3:12315207-12315226	Msa0799220:CDS	60.0%
	ACACCACCTCCACACCGCTT+TGG	+	chr5_3:12315190-12315209	Msa0799220:CDS	60.0%
	GTTCCTCCAAAGCGGTGTGG+AGG	-	chr5_3:12315199-12315218	None:intergenic	60.0%
	ACCGTTCCTCCAAAGCGGTG+TGG	-	chr5_3:12315202-12315221	None:intergenic	60.0%
	CGTGGACCGTTCCTCCAAAG+CGG	-	chr5_3:12315207-12315226	None:intergenic	60.0%
!	CTTTGGAGGAACGGTCCACG+AGG	+	chr5_3:12315207-12315226	Msa0799220:CDS	60.0%
	CCTCCAAAGCGGTGTGGAGG+TGG	-	chr5_3:12315196-12315215	None:intergenic	65.0%
	CCACCTCCACACCGCTTTGG+AGG	+	chr5_3:12315193-12315212	Msa0799220:CDS	65.0%
	GAACGGTCCACGAGGCCCAA+AGG	+	chr5_3:12315215-12315234	Msa0799220:CDS	65.0%
	AACTGCTGCAGCCGGCACAC+CGG	+	chr5_3:12315375-12315394	Msa0799220:CDS	65.0%
	AGATGGCGTTGCCGGTGTGC+CGG	-	chr5_3:12315389-12315408	None:intergenic	65.0%
	CCTCCAAAGCGGTGTGGAGG+TGG	-	chr5_3:12315196-12315215	None:intergenic	65.0%
	CCACCTCCACACCGCTTTGG+AGG	+	chr5_3:12315193-12315212	Msa0799220:CDS	65.0%
	GAACGGTCCACGAGGCCCAA+AGG	+	chr5_3:12315215-12315234	Msa0799220:CDS	65.0%
	AACTGCTGCAGCCGGCACAC+CGG	+	chr5_3:12315375-12315394	Msa0799220:CDS	65.0%
	AGATGGCGTTGCCGGTGTGC+CGG	-	chr5_3:12315389-12315408	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	12314434	12315591	12314434	ID=Msa0799220;Name=Msa0799220
chr5_3	mRNA	12314434	12315591	12314434	ID=Msa0799220-mRNA-1;Parent=Msa0799220;Name=Msa0799220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=371\|1\|0.5\|1\|1\|1\|2\|0\|232
chr5_3	exon	12314434	12315236	12314434	ID=Msa0799220-mRNA-1:exon:5066;Parent=Msa0799220-mRNA-1
chr5_3	exon	12315325	12315591	12315325	ID=Msa0799220-mRNA-1:exon:5067;Parent=Msa0799220-mRNA-1
chr5_3	five_prime_UTR	12314434	12314804	12314434	ID=Msa0799220-mRNA-1:five_prime_utr;Parent=Msa0799220-mRNA-1
chr5_3	CDS	12314805	12315236	12314805	ID=Msa0799220-mRNA-1:cds;Parent=Msa0799220-mRNA-1
chr5_3	CDS	12315325	12315591	12315325	ID=Msa0799220-mRNA-1:cds;Parent=Msa0799220-mRNA-1

Gene Sequence

>Msa0799220

ATGATGCATCGTTCATCTCAAGGGCAACACGTGATGGGACACTGTTCATGTGGTATGTTTCATGGACAAAACAACTCATTCTCAATGTTATTCTCTACACCTTATGATGAACCTGAAACCTATTGTTTCACTCCTAATTCTTCATCTTCTTCTTCTGTTGATTGTACTCTTTCACTTGGAACACCATCCACTCGTTTCACTGAAGATGAAGAGAAAAGAAGCCGACATCATGAACGTCGTTCTGTCAAAAATTTCTGTTGGGATTTGCTAACACCTAAACAGTACAACAGTACTCAGTCTCAAACAAAGGCAACACGTGCAAATACCAATAATAACAACAACTCCAACAATGATTCTCTTCTTGCTCGTAGATGTGCAAACTGTGACACCACCTCCACACCGCTTTGGAGGAACGGTCCACGAGGCCCAAAGTCACTATGCAATGCATGTGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCAACTGCTGCAGCCGGCACACCGGCAACGCCATCTATCGGCATAATGGAATCAGCTTCGATGTATAACCACCATCATCACAACAACTCATGGTACGTACAACCACAGAACCAGAAGATGCAGTGTTTCTCTCCAGCAATGACTAACGAGTTCCGTTTCATTGATGAAACCAATCATGATTCTGAAAATGGCATTCCATTTCTCTCTTGGAGACTCTAA

Protein sequence

>Msa0799220

MMHRSSQGQHVMGHCSCGMFHGQNNSFSMLFSTPYDEPETYCFTPNSSSSSSVDCTLSLGTPSTRFTEDEEKRSRHHERRSVKNFCWDLLTPKQYNSTQSQTKATRANTNNNNNSNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAAGTPATPSIGIMESASMYNHHHHNNSWYVQPQNQKMQCFSPAMTNEFRFIDETNHDSENGIPFLSWRL*