AlfalfaGEDB | Msa0689720

M. sativa cultivar zhongmu-4 / Msa0689720

KEGG: K21630
GO: GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689720	XP_003612004.2	90.377	239	12	5	1	232	71	305	4.08e-144	415

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689720	sp\|Q8LC79\|GAT18_ARATH	41.281	281	104	10	5	232	9	281	1.64e-47	161

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689720	A0A396HLL4	90.377	239	12	5	1	232	71	305	1.95e-144	415

TFs/TRs:

Gene ID	Type	Classification
Msa0689720	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032980	Msa0689720	0.803453	3.461814e-49	-8.615850e-47
Msa0091350	Msa0689720	0.802651	5.069423e-49	-8.615850e-47
Msa0606100	Msa0689720	0.809898	1.506788e-50	-8.615850e-47
Msa0620500	Msa0689720	0.805411	1.352643e-49	-8.615850e-47
Msa0647050	Msa0689720	0.810181	1.309387e-50	-8.615850e-47
Msa0654740	Msa0689720	0.824553	7.582128e-54	-8.615850e-47
Msa0689720	Msa0716820	0.855888	4.663597e-62	-8.615850e-47
Msa0689720	Msa0799220	0.849259	3.625930e-60	-8.615850e-47
Msa0689720	Msa1213830	0.804548	2.048662e-49	-8.615850e-47
Msa0689720	Msa1214350	0.806680	7.314875e-50	-8.615850e-47
Msa0689720	Msa1215980	0.807506	4.888732e-50	-8.615850e-47
Msa0689720	Msa1220030	0.804928	1.706767e-49	-8.615850e-47
Msa0689720	Msa1220170	0.806125	9.573544e-50	-8.615850e-47
Msa0689720	Msa1261050	0.803627	3.185722e-49	-8.615850e-47
Msa0689720	Msa1266300	0.800250	1.573628e-48	-8.615850e-47
Msa0689720	Msa1294790	0.802253	6.123218e-49	-8.615850e-47
Msa0689720	Msa1300460	0.804468	2.128957e-49	-8.615850e-47
Msa0373170	Msa0689720	0.807619	4.625686e-50	-8.615850e-47
Msa0421750	Msa0689720	0.808782	2.614872e-50	-8.615850e-47
Msa0467690	Msa0689720	0.810631	1.047123e-50	-8.615850e-47
Msa0561560	Msa0689720	0.821163	4.673110e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689720	MtrunA17_Chr5g0404131	90.377	239	12	5	1	232	71	305	3.75e-148	415
Msa0689720	MtrunA17_Chr8g0373231	55.556	243	82	8	1	232	1	228	3.27e-59	186
Msa0689720	MtrunA17_Chr1g0151461	38.889	90	52	2	89	177	155	242	2.45e-14	70.9
Msa0689720	MtrunA17_Chr7g0271861	56.250	48	19	1	119	166	18	63	2.75e-13	64.7
Msa0689720	MtrunA17_Chr2g0326771	40.000	60	36	0	96	155	189	248	8.24e-13	66.6
Msa0689720	MtrunA17_Chr4g0068031	67.568	37	12	0	123	159	30	66	1.06e-12	63.5
Msa0689720	MtrunA17_Chr4g0071301	69.048	42	12	1	111	152	181	221	1.40e-12	65.9
Msa0689720	MtrunA17_Chr4g0028961	32.143	84	52	1	72	155	186	264	1.08e-11	63.2
Msa0689720	MtrunA17_Chr1g0213161	62.857	35	13	0	121	155	150	184	1.84e-11	62.0
Msa0689720	MtrunA17_Chr5g0404981	38.571	70	41	1	88	155	263	332	5.76e-11	61.6
Msa0689720	MtrunA17_Chr1g0199671	62.162	37	14	0	119	155	238	274	6.40e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689720	AT3G50870.1	41.281	281	104	10	5	232	9	281	1.66e-48	161
Msa0689720	AT4G36620.1	43.891	221	83	10	27	232	3	197	7.21e-39	134
Msa0689720	AT2G18380.1	41.304	230	93	8	19	230	2	207	1.69e-36	128
Msa0689720	AT5G56860.1	49.462	93	33	3	64	156	185	263	5.78e-17	79.3
Msa0689720	AT5G49300.1	53.731	67	27	2	98	162	11	75	4.49e-15	70.1
Msa0689720	AT4G26150.1	63.830	47	16	1	107	153	184	229	1.16e-13	69.7
Msa0689720	AT1G08010.2	45.070	71	33	2	105	170	203	272	1.38e-12	66.2
Msa0689720	AT1G08010.1	45.070	71	33	2	105	170	203	272	1.38e-12	66.2
Msa0689720	AT1G08010.3	45.070	71	33	2	105	170	203	272	1.38e-12	66.2
Msa0689720	AT3G54810.1	37.234	94	54	1	106	194	212	305	4.33e-12	65.1
Msa0689720	AT3G54810.2	37.234	94	54	1	106	194	212	305	4.33e-12	65.1
Msa0689720	AT5G26930.1	67.568	37	12	0	123	159	26	62	4.39e-12	61.6
Msa0689720	AT3G06740.1	71.429	35	10	0	125	159	43	77	7.18e-12	61.6
Msa0689720	AT3G20750.1	70.588	34	10	0	127	160	163	196	1.66e-11	62.0
Msa0689720	AT2G45050.1	36.585	82	45	2	74	155	137	211	7.10e-11	60.8
Msa0689720	AT4G34680.1	50.980	51	23	1	107	155	162	212	8.06e-11	60.8
Msa0689720	AT4G34680.2	50.980	51	23	1	107	155	162	212	8.06e-11	60.8

Find 73 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCAATCATGATTCTGAAAA+TGG	0.202815	4_4:-56927812	Msa0689720:CDS
GGAGTGAAACAATAGGTTTC+AGG	0.229794	4_4:+56928449	None:intergenic
GTTGGAGTTGTTGTTATTAT+TGG	0.243633	4_4:+56928235	None:intergenic
CTTCATTTCATTAATTTCAT+TGG	0.284470	4_4:-56928821	Msa0689720:five_prime_UTR
GAAGAAGAAGATGAAGAATT+AGG	0.286532	4_4:+56928428	None:intergenic
ATGGCATTCCATTTCTCTCT+TGG	0.336081	4_4:-56927793	Msa0689720:CDS
GAGTGAATGGTAATAATAAA+AGG	0.354102	4_4:+56928637	None:intergenic
GAGAGAAACACTGCATCTTC+TGG	0.356763	4_4:+56927870	None:intergenic
TTCATTTCATTAATTTCATT+GGG	0.375952	4_4:-56928820	Msa0689720:five_prime_UTR
AGTGTTTGAAGATAATAAAA+TGG	0.376545	4_4:+56928691	None:intergenic
AACGCCATCTATCGGCATAA+TGG	0.385803	4_4:-56927954	Msa0689720:CDS
CAGGGAGTGAGTGTGATTGT+AGG	0.390962	4_4:+56928851	None:intergenic
AATGAAAATGAATGATTTGA+AGG	0.402129	4_4:+56928596	None:intergenic
CGGAACTCGTTAGTCATTGC+TGG	0.406108	4_4:+56927848	None:intergenic
TGTTCATGTGGTATGTTTCA+TGG	0.414708	4_4:-56928518	Msa0689720:CDS
CCACCTCCACACCGCTTTGG+AGG	0.424846	4_4:-56928172	Msa0689720:CDS
TAGGTTTCAGGTTCATCATA+AGG	0.424993	4_4:+56928461	None:intergenic
AATGAAATGAAGGGTAAGTC+AGG	0.429512	4_4:+56928832	None:intergenic
ATGCCGATAGATGGCGTTGC+CGG	0.430815	4_4:+56927959	None:intergenic
TTAGAGTAGAGAAGAGTGAA+TGG	0.442320	4_4:+56928624	None:intergenic
TAGAGTCTCCAAGAGAGAAA+TGG	0.442835	4_4:+56927785	None:intergenic
CAATGAAATTAATGAAATGA+AGG	0.448951	4_4:+56928822	None:intergenic
ATAGTAAAGGAGATAAATAG+AGG	0.453860	4_4:+56928791	None:intergenic
AGAATTAGGAGTGAAACAAT+AGG	0.458450	4_4:+56928442	None:intergenic
AGGGAGTGAGTGTGATTGTA+GGG	0.460006	4_4:+56928852	None:intergenic
AGAAGAGCAACTGCTGCAGC+CGG	0.462808	4_4:-56927986	Msa0689720:CDS
ACACCACCTCCACACCGCTT+TGG	0.463073	4_4:-56928175	Msa0689720:CDS
GATTCCATTATGCCGATAGA+TGG	0.464364	4_4:+56927950	None:intergenic
CCTCCAAAGCGGTGTGGAGG+TGG	0.470303	4_4:+56928172	None:intergenic
TATCTCTGCAGAATTACTAC+TGG	0.478719	4_4:+56928909	None:intergenic
TGAGTACTGTTGTACTGTTT+AGG	0.483115	4_4:+56928287	None:intergenic
CACTGCATCTTCTGGTTCTG+TGG	0.485352	4_4:+56927878	None:intergenic
AGCAAGAAGAGAATCATTGT+TGG	0.486549	4_4:+56928217	None:intergenic
GATTGGTTTCATCAATGAAA+CGG	0.487226	4_4:+56927828	None:intergenic
AACTGCTGCAGCCGGCACAC+CGG	0.491074	4_4:-56927978	Msa0689720:CDS
AGATGGCGTTGCCGGTGTGC+CGG	0.497703	4_4:+56927967	None:intergenic
ATGAAAATGAATGATTTGAA+GGG	0.497940	4_4:+56928597	None:intergenic
ACGTTGTCGTGAATTGCAAA+TGG	0.506728	4_4:+56928741	None:intergenic
ATCTCAAGGGCAACACGTGA+TGG	0.509206	4_4:-56928546	Msa0689720:CDS
TCCACACCGCTTTGGAGGAA+CGG	0.515774	4_4:-56928167	Msa0689720:CDS
TTCACGACAACGTGGACTGC+AGG	0.517568	4_4:-56928731	Msa0689720:five_prime_UTR
GTTGATTGTACTCTTTCACT+TGG	0.527724	4_4:-56928404	Msa0689720:CDS
ATGATGCATCGTTCATCTCA+AGG	0.533388	4_4:-56928560	Msa0689720:CDS
TAAAGGAGATAAATAGAGGG+AGG	0.538887	4_4:+56928795	None:intergenic
CAGAACGACGTTCATGATGT+CGG	0.540322	4_4:+56928339	None:intergenic
ATACATACTTACTTACATGA+AGG	0.540444	4_4:-56928942	None:intergenic
ACACCGGCAACGCCATCTAT+CGG	0.547655	4_4:-56927962	Msa0689720:CDS
TGAAAATGAATGATTTGAAG+GGG	0.547996	4_4:+56928598	None:intergenic
AAATACAAAATATATAGTAA+AGG	0.558250	4_4:+56928778	None:intergenic
TAGTAAAGGAGATAAATAGA+GGG	0.561536	4_4:+56928792	None:intergenic
TCTCAAGGGCAACACGTGAT+GGG	0.577571	4_4:-56928545	Msa0689720:CDS
AAAGGAGATAAATAGAGGGA+GGG	0.578878	4_4:+56928796	None:intergenic
CAGTCACTATGCAATGCATG+TGG	0.582954	4_4:-56928031	Msa0689720:CDS
TACATACTTACTTACATGAA+GGG	0.583328	4_4:-56928941	None:intergenic
ACCACCATCACAACAACTCA+TGG	0.584082	4_4:-56927910	Msa0689720:CDS
CAGTACTCAGTCTCAAACAA+AGG	0.584934	4_4:-56928273	Msa0689720:CDS
ATGAGTTGTTGTGATGGTGG+TGG	0.588375	4_4:+56927912	None:intergenic
AATGAAATTAATGAAATGAA+GGG	0.589066	4_4:+56928823	None:intergenic
TGATGCATCGTTCATCTCAA+GGG	0.590177	4_4:-56928559	Msa0689720:CDS
GTTCCTCCAAAGCGGTGTGG+AGG	0.595180	4_4:+56928169	None:intergenic
ATGAAATGAAGGGTAAGTCA+GGG	0.605058	4_4:+56928833	None:intergenic
TCTTCAGTGAATCGAGTGGA+TGG	0.606627	4_4:+56928377	None:intergenic
GAACGGTCCACGAGGCCCAA+AGG	0.609147	4_4:-56928150	Msa0689720:intron
ACCGTTCCTCCAAAGCGGTG+TGG	0.617219	4_4:+56928166	None:intergenic
TTCATCTTCAGTGAATCGAG+TGG	0.625964	4_4:+56928373	None:intergenic
ATGTGGGATCAGATTCAAGA+AGG	0.634149	4_4:-56928014	Msa0689720:CDS
ACCATGAGTTGTTGTGATGG+TGG	0.656581	4_4:+56927909	None:intergenic
AGTCACTATGCAATGCATGT+GGG	0.668102	4_4:-56928030	Msa0689720:CDS
CGTACCATGAGTTGTTGTGA+TGG	0.677789	4_4:+56927906	None:intergenic
CGTGGACCGTTCCTCCAAAG+CGG	0.688334	4_4:+56928161	None:intergenic
ATTTGCAATTCACGACAACG+TGG	0.691520	4_4:-56928739	Msa0689720:five_prime_UTR
CTTTGGAGGAACGGTCCACG+AGG	0.702547	4_4:-56928158	Msa0689720:CDS
GTGATGGGACACTGTTCATG+TGG	0.723745	4_4:-56928530	Msa0689720:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATACAAAATATATAGTAA+AGG	+	chr4_4:56927945-56927964	None:intergenic	10.0%
!!	AAATACAAAATATATAGTAA+AGG	+	chr4_4:56927945-56927964	None:intergenic	10.0%
!!	AATGAAATTAATGAAATGAA+GGG	+	chr4_4:56927900-56927919	None:intergenic	15.0%
!!	TTCATTTCATTAATTTCATT+GGG	-	chr4_4:56927900-56927919	Msa0689720:CDS	15.0%
!!	TAAAATGTTATATTTCATGT+TGG	+	chr4_4:56928654-56928673	None:intergenic	15.0%
!!!	ATATAACATTTTATGTTGAA+TGG	-	chr4_4:56928661-56928680	Msa0689720:five_prime_UTR	15.0%
!!	AATGAAATTAATGAAATGAA+GGG	+	chr4_4:56927900-56927919	None:intergenic	15.0%
!!	TTCATTTCATTAATTTCATT+GGG	-	chr4_4:56927900-56927919	Msa0689720:CDS	15.0%
!!	TAAAATGTTATATTTCATGT+TGG	+	chr4_4:56928654-56928673	None:intergenic	15.0%
!!!	ATATAACATTTTATGTTGAA+TGG	-	chr4_4:56928661-56928680	Msa0689720:five_prime_UTR	15.0%
!!	CAATGAAATTAATGAAATGA+AGG	+	chr4_4:56927901-56927920	None:intergenic	20.0%
!!	CTTCATTTCATTAATTTCAT+TGG	-	chr4_4:56927899-56927918	Msa0689720:CDS	20.0%
!!	AGTGTTTGAAGATAATAAAA+TGG	+	chr4_4:56928032-56928051	None:intergenic	20.0%
!!	ATGAAAATGAATGATTTGAA+GGG	+	chr4_4:56928126-56928145	None:intergenic	20.0%
!!	AATGAAAATGAATGATTTGA+AGG	+	chr4_4:56928127-56928146	None:intergenic	20.0%
!!	TTATATTTCATGTTGGTATT+TGG	+	chr4_4:56928647-56928666	None:intergenic	20.0%
!!	CAATGAAATTAATGAAATGA+AGG	+	chr4_4:56927901-56927920	None:intergenic	20.0%
!!	CTTCATTTCATTAATTTCAT+TGG	-	chr4_4:56927899-56927918	Msa0689720:CDS	20.0%
!!	AGTGTTTGAAGATAATAAAA+TGG	+	chr4_4:56928032-56928051	None:intergenic	20.0%
!!	ATGAAAATGAATGATTTGAA+GGG	+	chr4_4:56928126-56928145	None:intergenic	20.0%
!!	AATGAAAATGAATGATTTGA+AGG	+	chr4_4:56928127-56928146	None:intergenic	20.0%
!!	TTATATTTCATGTTGGTATT+TGG	+	chr4_4:56928647-56928666	None:intergenic	20.0%
!	TAGTAAAGGAGATAAATAGA+GGG	+	chr4_4:56927931-56927950	None:intergenic	25.0%
!	ATAGTAAAGGAGATAAATAG+AGG	+	chr4_4:56927932-56927951	None:intergenic	25.0%
!	GAGTGAATGGTAATAATAAA+AGG	+	chr4_4:56928086-56928105	None:intergenic	25.0%
!	TGAAAATGAATGATTTGAAG+GGG	+	chr4_4:56928125-56928144	None:intergenic	25.0%
!	TTCTGTCAAAAATTTCTGTT+GGG	-	chr4_4:56928399-56928418	Msa0689720:CDS	25.0%
!!!	TGTAGAGTATTTTTACCTTT+GGG	+	chr4_4:56928588-56928607	None:intergenic	25.0%
!!!	ATGTAGAGTATTTTTACCTT+TGG	+	chr4_4:56928589-56928608	None:intergenic	25.0%
!	TAGTAAAGGAGATAAATAGA+GGG	+	chr4_4:56927931-56927950	None:intergenic	25.0%
!	ATAGTAAAGGAGATAAATAG+AGG	+	chr4_4:56927932-56927951	None:intergenic	25.0%
!	GAGTGAATGGTAATAATAAA+AGG	+	chr4_4:56928086-56928105	None:intergenic	25.0%
!	TGAAAATGAATGATTTGAAG+GGG	+	chr4_4:56928125-56928144	None:intergenic	25.0%
!	TTCTGTCAAAAATTTCTGTT+GGG	-	chr4_4:56928399-56928418	Msa0689720:CDS	25.0%
!!!	TGTAGAGTATTTTTACCTTT+GGG	+	chr4_4:56928588-56928607	None:intergenic	25.0%
!!!	ATGTAGAGTATTTTTACCTT+TGG	+	chr4_4:56928589-56928608	None:intergenic	25.0%
	AGAATTAGGAGTGAAACAAT+AGG	+	chr4_4:56928281-56928300	None:intergenic	30.0%
	GAAGAAGAAGATGAAGAATT+AGG	+	chr4_4:56928295-56928314	None:intergenic	30.0%
	GTTCTGTCAAAAATTTCTGT+TGG	-	chr4_4:56928398-56928417	Msa0689720:CDS	30.0%
!	GTTGGAGTTGTTGTTATTAT+TGG	+	chr4_4:56928488-56928507	None:intergenic	30.0%
!!	GATTGGTTTCATCAATGAAA+CGG	+	chr4_4:56928895-56928914	None:intergenic	30.0%
!	ACCAATCATGATTCTGAAAA+TGG	-	chr4_4:56928908-56928927	Msa0689720:five_prime_UTR	30.0%
	AGAATTAGGAGTGAAACAAT+AGG	+	chr4_4:56928281-56928300	None:intergenic	30.0%
	GAAGAAGAAGATGAAGAATT+AGG	+	chr4_4:56928295-56928314	None:intergenic	30.0%
	GTTCTGTCAAAAATTTCTGT+TGG	-	chr4_4:56928398-56928417	Msa0689720:CDS	30.0%
!	GTTGGAGTTGTTGTTATTAT+TGG	+	chr4_4:56928488-56928507	None:intergenic	30.0%
!!	GATTGGTTTCATCAATGAAA+CGG	+	chr4_4:56928895-56928914	None:intergenic	30.0%
!	ACCAATCATGATTCTGAAAA+TGG	-	chr4_4:56928908-56928927	Msa0689720:five_prime_UTR	30.0%
	TATCTCTGCAGAATTACTAC+TGG	+	chr4_4:56927814-56927833	None:intergenic	35.0%
	ATGAAATGAAGGGTAAGTCA+GGG	+	chr4_4:56927890-56927909	None:intergenic	35.0%
	AATGAAATGAAGGGTAAGTC+AGG	+	chr4_4:56927891-56927910	None:intergenic	35.0%
	AAAGGAGATAAATAGAGGGA+GGG	+	chr4_4:56927927-56927946	None:intergenic	35.0%
	TAAAGGAGATAAATAGAGGG+AGG	+	chr4_4:56927928-56927947	None:intergenic	35.0%
	TTAGAGTAGAGAAGAGTGAA+TGG	+	chr4_4:56928099-56928118	None:intergenic	35.0%
	TGTTCATGTGGTATGTTTCA+TGG	-	chr4_4:56928202-56928221	Msa0689720:CDS	35.0%
!!	TAGGTTTCAGGTTCATCATA+AGG	+	chr4_4:56928262-56928281	None:intergenic	35.0%
	GTTGATTGTACTCTTTCACT+TGG	-	chr4_4:56928316-56928335	Msa0689720:CDS	35.0%
!	TGAGTACTGTTGTACTGTTT+AGG	+	chr4_4:56928436-56928455	None:intergenic	35.0%
	AGCAAGAAGAGAATCATTGT+TGG	+	chr4_4:56928506-56928525	None:intergenic	35.0%
!!	GCCATTTTCAGAATCATGAT+TGG	+	chr4_4:56928912-56928931	None:intergenic	35.0%
	TATCTCTGCAGAATTACTAC+TGG	+	chr4_4:56927814-56927833	None:intergenic	35.0%
	ATGAAATGAAGGGTAAGTCA+GGG	+	chr4_4:56927890-56927909	None:intergenic	35.0%
	AATGAAATGAAGGGTAAGTC+AGG	+	chr4_4:56927891-56927910	None:intergenic	35.0%
	AAAGGAGATAAATAGAGGGA+GGG	+	chr4_4:56927927-56927946	None:intergenic	35.0%
	TAAAGGAGATAAATAGAGGG+AGG	+	chr4_4:56927928-56927947	None:intergenic	35.0%
	TTAGAGTAGAGAAGAGTGAA+TGG	+	chr4_4:56928099-56928118	None:intergenic	35.0%
	TGTTCATGTGGTATGTTTCA+TGG	-	chr4_4:56928202-56928221	Msa0689720:CDS	35.0%
!!	TAGGTTTCAGGTTCATCATA+AGG	+	chr4_4:56928262-56928281	None:intergenic	35.0%
	GTTGATTGTACTCTTTCACT+TGG	-	chr4_4:56928316-56928335	Msa0689720:CDS	35.0%
!	TGAGTACTGTTGTACTGTTT+AGG	+	chr4_4:56928436-56928455	None:intergenic	35.0%
	AGCAAGAAGAGAATCATTGT+TGG	+	chr4_4:56928506-56928525	None:intergenic	35.0%
!!	GCCATTTTCAGAATCATGAT+TGG	+	chr4_4:56928912-56928931	None:intergenic	35.0%
	ACGTTGTCGTGAATTGCAAA+TGG	+	chr4_4:56927982-56928001	None:intergenic	40.0%
	ATTTGCAATTCACGACAACG+TGG	-	chr4_4:56927981-56928000	Msa0689720:CDS	40.0%
	ATGATGCATCGTTCATCTCA+AGG	-	chr4_4:56928160-56928179	Msa0689720:CDS	40.0%
	TGATGCATCGTTCATCTCAA+GGG	-	chr4_4:56928161-56928180	Msa0689720:CDS	40.0%
	GGAGTGAAACAATAGGTTTC+AGG	+	chr4_4:56928274-56928293	None:intergenic	40.0%
	TTCATCTTCAGTGAATCGAG+TGG	+	chr4_4:56928350-56928369	None:intergenic	40.0%
	CAGTACTCAGTCTCAAACAA+AGG	-	chr4_4:56928447-56928466	Msa0689720:CDS	40.0%
	AGTCACTATGCAATGCATGT+GGG	-	chr4_4:56928690-56928709	Msa0689720:five_prime_UTR	40.0%
	ATGTGGGATCAGATTCAAGA+AGG	-	chr4_4:56928706-56928725	Msa0689720:five_prime_UTR	40.0%
	GATTCCATTATGCCGATAGA+TGG	+	chr4_4:56928773-56928792	None:intergenic	40.0%
	ATGGCATTCCATTTCTCTCT+TGG	-	chr4_4:56928927-56928946	Msa0689720:five_prime_UTR	40.0%
	TAGAGTCTCCAAGAGAGAAA+TGG	+	chr4_4:56928938-56928957	None:intergenic	40.0%
	ACGTTGTCGTGAATTGCAAA+TGG	+	chr4_4:56927982-56928001	None:intergenic	40.0%
	ATTTGCAATTCACGACAACG+TGG	-	chr4_4:56927981-56928000	Msa0689720:CDS	40.0%
	ATGATGCATCGTTCATCTCA+AGG	-	chr4_4:56928160-56928179	Msa0689720:CDS	40.0%
	TGATGCATCGTTCATCTCAA+GGG	-	chr4_4:56928161-56928180	Msa0689720:CDS	40.0%
	GGAGTGAAACAATAGGTTTC+AGG	+	chr4_4:56928274-56928293	None:intergenic	40.0%
	TTCATCTTCAGTGAATCGAG+TGG	+	chr4_4:56928350-56928369	None:intergenic	40.0%
	CAGTACTCAGTCTCAAACAA+AGG	-	chr4_4:56928447-56928466	Msa0689720:CDS	40.0%
	AGTCACTATGCAATGCATGT+GGG	-	chr4_4:56928690-56928709	Msa0689720:five_prime_UTR	40.0%
	ATGTGGGATCAGATTCAAGA+AGG	-	chr4_4:56928706-56928725	Msa0689720:five_prime_UTR	40.0%
	GATTCCATTATGCCGATAGA+TGG	+	chr4_4:56928773-56928792	None:intergenic	40.0%
	ATGGCATTCCATTTCTCTCT+TGG	-	chr4_4:56928927-56928946	Msa0689720:five_prime_UTR	40.0%
	TAGAGTCTCCAAGAGAGAAA+TGG	+	chr4_4:56928938-56928957	None:intergenic	40.0%
	AGGGAGTGAGTGTGATTGTA+GGG	+	chr4_4:56927871-56927890	None:intergenic	45.0%
	TCTTCAGTGAATCGAGTGGA+TGG	+	chr4_4:56928346-56928365	None:intergenic	45.0%
	CAGAACGACGTTCATGATGT+CGG	+	chr4_4:56928384-56928403	None:intergenic	45.0%
!	ATTTTTACCTTTGGGCCTCG+TGG	+	chr4_4:56928580-56928599	None:intergenic	45.0%
	CAGTCACTATGCAATGCATG+TGG	-	chr4_4:56928689-56928708	Msa0689720:five_prime_UTR	45.0%
	AACGCCATCTATCGGCATAA+TGG	-	chr4_4:56928766-56928785	Msa0689720:five_prime_UTR	45.0%
!!	ATGAGTTGTTGTGATGGTGG+TGG	+	chr4_4:56928811-56928830	None:intergenic	45.0%
	ACCACCATCACAACAACTCA+TGG	-	chr4_4:56928810-56928829	Msa0689720:five_prime_UTR	45.0%
	ACCATGAGTTGTTGTGATGG+TGG	+	chr4_4:56928814-56928833	None:intergenic	45.0%
	CGTACCATGAGTTGTTGTGA+TGG	+	chr4_4:56928817-56928836	None:intergenic	45.0%
	GAGAGAAACACTGCATCTTC+TGG	+	chr4_4:56928853-56928872	None:intergenic	45.0%
	AGGGAGTGAGTGTGATTGTA+GGG	+	chr4_4:56927871-56927890	None:intergenic	45.0%
	TCTTCAGTGAATCGAGTGGA+TGG	+	chr4_4:56928346-56928365	None:intergenic	45.0%
	CAGAACGACGTTCATGATGT+CGG	+	chr4_4:56928384-56928403	None:intergenic	45.0%
!	ATTTTTACCTTTGGGCCTCG+TGG	+	chr4_4:56928580-56928599	None:intergenic	45.0%
	CAGTCACTATGCAATGCATG+TGG	-	chr4_4:56928689-56928708	Msa0689720:five_prime_UTR	45.0%
	AACGCCATCTATCGGCATAA+TGG	-	chr4_4:56928766-56928785	Msa0689720:five_prime_UTR	45.0%
!!	ATGAGTTGTTGTGATGGTGG+TGG	+	chr4_4:56928811-56928830	None:intergenic	45.0%
	ACCACCATCACAACAACTCA+TGG	-	chr4_4:56928810-56928829	Msa0689720:five_prime_UTR	45.0%
	ACCATGAGTTGTTGTGATGG+TGG	+	chr4_4:56928814-56928833	None:intergenic	45.0%
	CGTACCATGAGTTGTTGTGA+TGG	+	chr4_4:56928817-56928836	None:intergenic	45.0%
	GAGAGAAACACTGCATCTTC+TGG	+	chr4_4:56928853-56928872	None:intergenic	45.0%
	CAGGGAGTGAGTGTGATTGT+AGG	+	chr4_4:56927872-56927891	None:intergenic	50.0%
	ATCTCAAGGGCAACACGTGA+TGG	-	chr4_4:56928174-56928193	Msa0689720:CDS	50.0%
	TCTCAAGGGCAACACGTGAT+GGG	-	chr4_4:56928175-56928194	Msa0689720:CDS	50.0%
!	GTGATGGGACACTGTTCATG+TGG	-	chr4_4:56928190-56928209	Msa0689720:CDS	50.0%
!!	CACTGCATCTTCTGGTTCTG+TGG	+	chr4_4:56928845-56928864	None:intergenic	50.0%
	CGGAACTCGTTAGTCATTGC+TGG	+	chr4_4:56928875-56928894	None:intergenic	50.0%
	CAGGGAGTGAGTGTGATTGT+AGG	+	chr4_4:56927872-56927891	None:intergenic	50.0%
	ATCTCAAGGGCAACACGTGA+TGG	-	chr4_4:56928174-56928193	Msa0689720:CDS	50.0%
	TCTCAAGGGCAACACGTGAT+GGG	-	chr4_4:56928175-56928194	Msa0689720:CDS	50.0%
!	GTGATGGGACACTGTTCATG+TGG	-	chr4_4:56928190-56928209	Msa0689720:CDS	50.0%
!!	CACTGCATCTTCTGGTTCTG+TGG	+	chr4_4:56928845-56928864	None:intergenic	50.0%
	CGGAACTCGTTAGTCATTGC+TGG	+	chr4_4:56928875-56928894	None:intergenic	50.0%
!	TTCACGACAACGTGGACTGC+AGG	-	chr4_4:56927989-56928008	Msa0689720:CDS	55.0%
!!	TCCACACCGCTTTGGAGGAA+CGG	-	chr4_4:56928553-56928572	Msa0689720:CDS	55.0%
	AGAAGAGCAACTGCTGCAGC+CGG	-	chr4_4:56928734-56928753	Msa0689720:five_prime_UTR	55.0%
	ACACCGGCAACGCCATCTAT+CGG	-	chr4_4:56928758-56928777	Msa0689720:five_prime_UTR	55.0%
	ATGCCGATAGATGGCGTTGC+CGG	+	chr4_4:56928764-56928783	None:intergenic	55.0%
!	TTCACGACAACGTGGACTGC+AGG	-	chr4_4:56927989-56928008	Msa0689720:CDS	55.0%
!!	TCCACACCGCTTTGGAGGAA+CGG	-	chr4_4:56928553-56928572	Msa0689720:CDS	55.0%
	AGAAGAGCAACTGCTGCAGC+CGG	-	chr4_4:56928734-56928753	Msa0689720:five_prime_UTR	55.0%
	ACACCGGCAACGCCATCTAT+CGG	-	chr4_4:56928758-56928777	Msa0689720:five_prime_UTR	55.0%
	ATGCCGATAGATGGCGTTGC+CGG	+	chr4_4:56928764-56928783	None:intergenic	55.0%
	ACACCACCTCCACACCGCTT+TGG	-	chr4_4:56928545-56928564	Msa0689720:CDS	60.0%
	GTTCCTCCAAAGCGGTGTGG+AGG	+	chr4_4:56928554-56928573	None:intergenic	60.0%
	ACCGTTCCTCCAAAGCGGTG+TGG	+	chr4_4:56928557-56928576	None:intergenic	60.0%
	CGTGGACCGTTCCTCCAAAG+CGG	+	chr4_4:56928562-56928581	None:intergenic	60.0%
!	CTTTGGAGGAACGGTCCACG+AGG	-	chr4_4:56928562-56928581	Msa0689720:CDS	60.0%
	ACACCACCTCCACACCGCTT+TGG	-	chr4_4:56928545-56928564	Msa0689720:CDS	60.0%
	GTTCCTCCAAAGCGGTGTGG+AGG	+	chr4_4:56928554-56928573	None:intergenic	60.0%
	ACCGTTCCTCCAAAGCGGTG+TGG	+	chr4_4:56928557-56928576	None:intergenic	60.0%
	CGTGGACCGTTCCTCCAAAG+CGG	+	chr4_4:56928562-56928581	None:intergenic	60.0%
!	CTTTGGAGGAACGGTCCACG+AGG	-	chr4_4:56928562-56928581	Msa0689720:CDS	60.0%
	CCTCCAAAGCGGTGTGGAGG+TGG	+	chr4_4:56928551-56928570	None:intergenic	65.0%
	CCACCTCCACACCGCTTTGG+AGG	-	chr4_4:56928548-56928567	Msa0689720:CDS	65.0%
	GAACGGTCCACGAGGCCCAA+AGG	-	chr4_4:56928570-56928589	Msa0689720:exon	65.0%
	AACTGCTGCAGCCGGCACAC+CGG	-	chr4_4:56928742-56928761	Msa0689720:five_prime_UTR	65.0%
	AGATGGCGTTGCCGGTGTGC+CGG	+	chr4_4:56928756-56928775	None:intergenic	65.0%
	CCTCCAAAGCGGTGTGGAGG+TGG	+	chr4_4:56928551-56928570	None:intergenic	65.0%
	CCACCTCCACACCGCTTTGG+AGG	-	chr4_4:56928548-56928567	Msa0689720:CDS	65.0%
	GAACGGTCCACGAGGCCCAA+AGG	-	chr4_4:56928570-56928589	Msa0689720:exon	65.0%
	AACTGCTGCAGCCGGCACAC+CGG	-	chr4_4:56928742-56928761	Msa0689720:five_prime_UTR	65.0%
	AGATGGCGTTGCCGGTGTGC+CGG	+	chr4_4:56928756-56928775	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	56927784	56928958	56927784	ID=Msa0689720;Name=Msa0689720
chr4_4	mRNA	56927784	56928958	56927784	ID=Msa0689720-mRNA-1;Parent=Msa0689720;Name=Msa0689720-mRNA-1;_AED=0.00;_eAED=0.00;_QI=376\|1\|0.5\|1\|1\|1\|2\|0\|232
chr4_4	exon	56927784	56928050	56927784	ID=Msa0689720-mRNA-1:exon:15163;Parent=Msa0689720-mRNA-1
chr4_4	exon	56928151	56928958	56928151	ID=Msa0689720-mRNA-1:exon:15162;Parent=Msa0689720-mRNA-1
chr4_4	five_prime_UTR	56928583	56928958	56928583	ID=Msa0689720-mRNA-1:five_prime_utr;Parent=Msa0689720-mRNA-1
chr4_4	CDS	56928151	56928582	56928151	ID=Msa0689720-mRNA-1:cds;Parent=Msa0689720-mRNA-1
chr4_4	CDS	56927784	56928050	56927784	ID=Msa0689720-mRNA-1:cds;Parent=Msa0689720-mRNA-1

Gene Sequence

>Msa0689720

ATGATGCATCGTTCATCTCAAGGGCAACACGTGATGGGACACTGTTCATGTGGTATGTTTCATGGACAAAACAACTCATTCTCAATGTTATTCTCTACACCTTATGATGAACCTGAAACCTATTGTTTCACTCCTAATTCTTCATCTTCTTCTTCTGTTGATTGTACTCTTTCACTTGGAACACCATCCACTCGATTCACTGAAGATGAAGAGAAAAGAAGCCGACATCATGAACGTCGTTCTGTCAAAAATTTCTGTTGGGATTTGCTAACACCTAAACAGTACAACAGTACTCAGTCTCAAACAAAGGCAACACGTGCAAATACCAATAATAACAACAACTCCAACAATGATTCTCTTCTTGCTCGTAGATGTGCAAACTGTGACACCACCTCCACACCGCTTTGGAGGAACGGTCCACGAGGCCCAAAGTCACTATGCAATGCATGTGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCAACTGCTGCAGCCGGCACACCGGCAACGCCATCTATCGGCATAATGGAATCAGCTTCGATGTATAACCACCACCATCACAACAACTCATGGTACGTACAACCACAGAACCAGAAGATGCAGTGTTTCTCTCCAGCAATGACTAACGAGTTCCGTTTCATTGATGAAACCAATCATGATTCTGAAAATGGCATTCCATTTCTCTCTTGGAGACTCTAA

Protein sequence

>Msa0689720

MMHRSSQGQHVMGHCSCGMFHGQNNSFSMLFSTPYDEPETYCFTPNSSSSSSVDCTLSLGTPSTRFTEDEEKRSRHHERRSVKNFCWDLLTPKQYNSTQSQTKATRANTNNNNNSNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAAGTPATPSIGIMESASMYNHHHHNNSWYVQPQNQKMQCFSPAMTNEFRFIDETNHDSENGIPFLSWRL*