Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799650 | KAG2376161.1 | 81.748 | 389 | 26 | 3 | 2 | 345 | 1 | 389 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799650 | sp|Q9SD33|PHAF1_ARATH | 66.749 | 403 | 71 | 5 | 1 | 345 | 12 | 409 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799650 | A0A1U8FVT9 | 85.756 | 344 | 48 | 1 | 2 | 345 | 1 | 343 | 0.0 | 626 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607340 | Msa0799650 | 0.808380 | 3.186694e-50 | -8.615850e-47 |
| Msa0799650 | Msa1007610 | 0.814357 | 1.605224e-51 | -8.615850e-47 |
| Msa0799650 | Msa1157420 | 0.816471 | 5.436908e-52 | -8.615850e-47 |
| Msa0799650 | Msa1307660 | 0.813481 | 2.504812e-51 | -8.615850e-47 |
| Msa0799650 | Msa1332040 | 0.808663 | 2.772354e-50 | -8.615850e-47 |
| Msa0799650 | Msa1453780 | 0.819551 | 1.094301e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799650 | MtrunA17_Chr5g0405081 | 78.818 | 406 | 22 | 5 | 1 | 345 | 1 | 403 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799650 | AT3G51130.1 | 66.749 | 403 | 71 | 5 | 1 | 345 | 12 | 409 | 0.0 | 525 |
Find 147 sgRNAs with CRISPR-Local
Find 447 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACATTAGCGTTATTTATT+TGG | 0.111647 | 5_3:-12932602 | None:intergenic |
| TGTGCCTTCGCAACGGCGTC+TGG | 0.182064 | 5_3:-12932885 | None:intergenic |
| TTTAGATTGGAAATGATATT+TGG | 0.216578 | 5_3:-12932715 | None:intergenic |
| TTCCTTTGCATTTCCTATTC+CGG | 0.218808 | 5_3:+12935662 | Msa0799650:CDS |
| TGTCTTGATGCAGGGGCTTT+TGG | 0.222102 | 5_3:+12938065 | Msa0799650:intron |
| TCCTTTGCATTTCCTATTCC+GGG | 0.232413 | 5_3:+12935663 | Msa0799650:CDS |
| TGTTGAATTGAATGCTTATA+TGG | 0.239303 | 5_3:-12932763 | None:intergenic |
| GGTTGGTGTGGGCTCTTTAA+TGG | 0.242971 | 5_3:+12935877 | Msa0799650:CDS |
| ATGGGGTTGGTTCGTTCTAT+TGG | 0.267130 | 5_3:-12932744 | None:intergenic |
| TCTTTCTGCCTATCATTCTA+AGG | 0.269440 | 5_3:+12938105 | Msa0799650:CDS |
| GTAAGATTCTCTCCTTTGTC+TGG | 0.269499 | 5_3:+12938361 | Msa0799650:three_prime_UTR |
| GGCTCCCAACACATTCCTTT+TGG | 0.284297 | 5_3:+12936138 | Msa0799650:CDS |
| TTTGGTTCTACTCTTGTATA+TGG | 0.294971 | 5_3:+12937601 | Msa0799650:CDS |
| TAATAACAATGTCCAACTTC+AGG | 0.309756 | 5_3:-12933883 | None:intergenic |
| AAATAACGCTAATGTGGGTT+TGG | 0.323662 | 5_3:+12932608 | Msa0799650:five_prime_UTR |
| TACTTGTTCCCACTTTGTGC+TGG | 0.327350 | 5_3:-12937330 | None:intergenic |
| ATTGGAAATGATATTTGGTT+TGG | 0.344793 | 5_3:-12932710 | None:intergenic |
| ATAGAAACGCGGCATGTAAC+TGG | 0.345848 | 5_3:-12935830 | None:intergenic |
| CTGGGTCTCTGCAACATAAT+CGG | 0.348119 | 5_3:-12932866 | None:intergenic |
| CTCGATCTTCGTCCCGGTCT+CGG | 0.354526 | 5_3:+12932926 | Msa0799650:CDS |
| GGTTTGGGTGGCGTGCGAGA+GGG | 0.355632 | 5_3:+12932624 | Msa0799650:five_prime_UTR |
| AGTAGAACCAAACGGGTTAC+TGG | 0.360950 | 5_3:-12937590 | None:intergenic |
| GTTTGGGTGGCGTGCGAGAG+GGG | 0.364646 | 5_3:+12932625 | Msa0799650:five_prime_UTR |
| GTTATTAGCTTTCCTGATCA+TGG | 0.370440 | 5_3:+12933899 | Msa0799650:CDS |
| TTCATCTCCGTTTCGATCCA+TGG | 0.377870 | 5_3:+12933924 | Msa0799650:CDS |
| TGTGGGCTCTTTAATGGATA+AGG | 0.379884 | 5_3:+12935883 | Msa0799650:CDS |
| CATGGAAGAGGTTCACGTTA+AGG | 0.381289 | 5_3:+12935940 | Msa0799650:CDS |
| TACATTCTGCCTCTGATCTT+CGG | 0.382219 | 5_3:+12936883 | Msa0799650:CDS |
| TGGGTCTCTGCAACATAATC+GGG | 0.383661 | 5_3:-12932865 | None:intergenic |
| TAATTACTTTACTCGTGGTC+TGG | 0.395508 | 5_3:+12936938 | Msa0799650:CDS |
| GGTCTGGACATCTTATTTGA+TGG | 0.395571 | 5_3:+12936954 | Msa0799650:CDS |
| CCATCTGGAAGTTAAGCATT+AGG | 0.397502 | 5_3:-12938329 | None:intergenic |
| GGGTTTGGGTGGCGTGCGAG+AGG | 0.398090 | 5_3:+12932623 | Msa0799650:five_prime_UTR |
| TTTGGGTGGCGTGCGAGAGG+GGG | 0.402293 | 5_3:+12932626 | Msa0799650:five_prime_UTR |
| GTGCCTTCGCAACGGCGTCT+GGG | 0.403078 | 5_3:-12932884 | None:intergenic |
| CTATTGGTTTAGATTTAGAT+TGG | 0.403746 | 5_3:-12932728 | None:intergenic |
| TGCTTTGCAGGTAGATCAAA+TGG | 0.404548 | 5_3:+12936857 | Msa0799650:intron |
| GCCCACACCAACCTTCTTAC+CGG | 0.404838 | 5_3:-12935867 | None:intergenic |
| TGAGCAAATGCTTCACATAT+AGG | 0.410133 | 5_3:-12933378 | None:intergenic |
| TCTGTAAACTGACCCGGAAT+AGG | 0.411115 | 5_3:-12935675 | None:intergenic |
| AATAACGCTAATGTGGGTTT+GGG | 0.416386 | 5_3:+12932609 | Msa0799650:five_prime_UTR |
| GTAACTGGCGTTGTCCCATC+TGG | 0.416753 | 5_3:-12935815 | None:intergenic |
| GGACATCTTATTTGATGGAC+AGG | 0.424619 | 5_3:+12936959 | Msa0799650:CDS |
| GGATTCTTGTAGGAAATACT+TGG | 0.426223 | 5_3:+12937529 | Msa0799650:intron |
| CTTCGTCCCGGTCTCGGAAT+CGG | 0.433942 | 5_3:+12932932 | Msa0799650:CDS |
| ACTTGTTCCCACTTTGTGCT+GGG | 0.438309 | 5_3:-12937329 | None:intergenic |
| AGGAAATACTTGGGGATTGT+GGG | 0.438967 | 5_3:+12937539 | Msa0799650:intron |
| TAGGAAATACTTGGGGATTG+TGG | 0.444881 | 5_3:+12937538 | Msa0799650:intron |
| TAAGATTCTCTCCTTTGTCT+GGG | 0.450581 | 5_3:+12938362 | Msa0799650:three_prime_UTR |
| TGCACCACATCATACAAATT+CGG | 0.452570 | 5_3:-12933414 | None:intergenic |
| AATAACAATGTCCAACTTCA+GGG | 0.453191 | 5_3:-12933882 | None:intergenic |
| CGGAGATGAAAACCATGATC+AGG | 0.458778 | 5_3:-12933911 | None:intergenic |
| ACCTACTGGCAGCATTTACA+TGG | 0.461032 | 5_3:+12935922 | Msa0799650:CDS |
| TCTTACAAAGTGAAACCATC+TGG | 0.465665 | 5_3:-12938344 | None:intergenic |
| CAGGATGTGTGGACTGAACT+AGG | 0.467300 | 5_3:+12936315 | Msa0799650:intron |
| ACCATCATTATCGTGCGAAT+GGG | 0.467715 | 5_3:+12938213 | Msa0799650:three_prime_UTR |
| CCAAATAAATAACGCTAATG+TGG | 0.468784 | 5_3:+12932602 | Msa0799650:five_prime_UTR |
| GTTGAATTGAATGCTTATAT+GGG | 0.469312 | 5_3:-12932762 | None:intergenic |
| TCGGTACTGTTTGGATTAGT+CGG | 0.469688 | 5_3:-12938397 | None:intergenic |
| TTTACAGACTGCTGTCATGA+TGG | 0.473501 | 5_3:+12935690 | Msa0799650:CDS |
| GAATGATAGGCAGAAAGATT+AGG | 0.475973 | 5_3:-12938100 | None:intergenic |
| CCGTTTCGATCCATGGTCTC+AGG | 0.476105 | 5_3:+12933931 | Msa0799650:CDS |
| AGAATTAAAATCAGCATGAC+CGG | 0.480217 | 5_3:-12937110 | None:intergenic |
| TCTGCTCCTCCATTACCTAC+TGG | 0.482262 | 5_3:+12935908 | Msa0799650:CDS |
| TTCGCAAACCTTAGAATGAT+AGG | 0.483457 | 5_3:-12938113 | None:intergenic |
| TGCAACATAATCGGGGAAGT+TGG | 0.484482 | 5_3:-12932857 | None:intergenic |
| CACCATCATTATCGTGCGAA+TGG | 0.487125 | 5_3:+12938212 | Msa0799650:three_prime_UTR |
| GATTCTTGTAGGAAATACTT+GGG | 0.490667 | 5_3:+12937530 | Msa0799650:intron |
| CCATGGCTGTGCCTTCGCAA+CGG | 0.491711 | 5_3:-12932892 | None:intergenic |
| CACAAAGTGGGAACAAGTAA+AGG | 0.495128 | 5_3:+12937334 | Msa0799650:CDS |
| TCTATATATGATAGTTCCTC+CGG | 0.496625 | 5_3:+12935848 | Msa0799650:CDS |
| TTTGCAGGAACCCCTGAAGT+TGG | 0.497216 | 5_3:+12933871 | Msa0799650:intron |
| AGAGAATTACCGAGGGAGAA+AGG | 0.497513 | 5_3:-12932956 | None:intergenic |
| ATCGTTCTCGATCTTCGTCC+CGG | 0.499554 | 5_3:+12932920 | Msa0799650:CDS |
| TAAATGCTGCCAGTAGGTAA+TGG | 0.500733 | 5_3:-12935917 | None:intergenic |
| CGTTGCGAAGGCACAGCCAT+GGG | 0.504040 | 5_3:+12932893 | Msa0799650:CDS |
| TTTGTCATCTATTGCTCCGA+TGG | 0.505532 | 5_3:+12937148 | Msa0799650:CDS |
| TGCACCAAAAGGAATGTGTT+GGG | 0.510729 | 5_3:-12936142 | None:intergenic |
| AAAAGAAGCACCTGAGACCA+TGG | 0.511392 | 5_3:-12933941 | None:intergenic |
| TTACAGACTGCTGTCATGAT+GGG | 0.511785 | 5_3:+12935691 | Msa0799650:CDS |
| GAAAGGACCGATTCCGAGAC+CGG | 0.513666 | 5_3:-12932939 | None:intergenic |
| AGGTTTGCGAAGCGTGGTTG+CGG | 0.513786 | 5_3:+12938125 | Msa0799650:CDS |
| GGTTCTGCCAGTAACCCGTT+TGG | 0.518885 | 5_3:+12937583 | Msa0799650:CDS |
| GAAGAATTGTACTTCACTGT+TGG | 0.523243 | 5_3:+12936117 | Msa0799650:CDS |
| AACATAATCGGGGAAGTTGG+AGG | 0.526428 | 5_3:-12932854 | None:intergenic |
| ACCTGTGGGGATGCACCAAA+AGG | 0.526488 | 5_3:-12936153 | None:intergenic |
| TGATAGTTCCTCCGGTAAGA+AGG | 0.528379 | 5_3:+12935856 | Msa0799650:CDS |
| ATTGAATGCTTATATGGGGT+TGG | 0.530836 | 5_3:-12932757 | None:intergenic |
| GGCAGAACCTTGTGTCTGAA+TGG | 0.531123 | 5_3:-12937569 | None:intergenic |
| GGAATCGGTCCTTTCTCCCT+CGG | 0.532561 | 5_3:+12932947 | Msa0799650:CDS |
| GGAACTTCACAAGGAGTGGC+AGG | 0.534042 | 5_3:+12938146 | Msa0799650:CDS |
| TATACAAGAGTAGAACCAAA+CGG | 0.534505 | 5_3:-12937598 | None:intergenic |
| TATGAAAGTGGAATTGCCGT+TGG | 0.537786 | 5_3:+12935787 | Msa0799650:intron |
| CTCCGGTAAGAAGGTTGGTG+TGG | 0.537886 | 5_3:+12935865 | Msa0799650:CDS |
| ATGCACCAAAAGGAATGTGT+TGG | 0.539650 | 5_3:-12936143 | None:intergenic |
| TGGCAGCATTTACATGGAAG+AGG | 0.545209 | 5_3:+12935928 | Msa0799650:CDS |
| ATACAAGAGTAGAACCAAAC+GGG | 0.545894 | 5_3:-12937597 | None:intergenic |
| GGTTGGAATTCCGTTACTAT+CGG | 0.546765 | 5_3:-12932813 | None:intergenic |
| CTGCCTCTGATCTTCGGCCA+CGG | 0.547314 | 5_3:+12936889 | Msa0799650:CDS |
| ATTATCGTGCGAATGGGCTA+TGG | 0.549970 | 5_3:+12938219 | Msa0799650:three_prime_UTR |
| GCCCATTCGCACGATAATGA+TGG | 0.550969 | 5_3:-12938214 | None:intergenic |
| CAAATAAATAACGCTAATGT+GGG | 0.552572 | 5_3:+12932603 | Msa0799650:five_prime_UTR |
| CCTAATGCTTAACTTCCAGA+TGG | 0.553275 | 5_3:+12938329 | Msa0799650:three_prime_UTR |
| TTGCCGTTGGAGTTTCCAGA+TGG | 0.554234 | 5_3:+12935800 | Msa0799650:CDS |
| AACGCTAATGTGGGTTTGGG+TGG | 0.558431 | 5_3:+12932612 | Msa0799650:five_prime_UTR |
| AGACCCAGACGCCGTTGCGA+AGG | 0.560921 | 5_3:+12932881 | Msa0799650:CDS |
| CGTGGTTGCGGAACTTCACA+AGG | 0.568987 | 5_3:+12938137 | Msa0799650:CDS |
| ATCGAGAACGATAGCGCCCA+TGG | 0.570136 | 5_3:-12932909 | None:intergenic |
| TCCGGTAAGAAGGTTGGTGT+GGG | 0.572473 | 5_3:+12935866 | Msa0799650:CDS |
| TGCCGTTGGAGTTTCCAGAT+GGG | 0.573414 | 5_3:+12935801 | Msa0799650:CDS |
| CCTGAGACCATGGATCGAAA+CGG | 0.574278 | 5_3:-12933931 | None:intergenic |
| CCGTTGCGAAGGCACAGCCA+TGG | 0.574589 | 5_3:+12932892 | Msa0799650:CDS |
| CTGCGGTATTCATCAAAAGC+AGG | 0.574717 | 5_3:+12936344 | Msa0799650:CDS |
| AAAGGACCGATTCCGAGACC+GGG | 0.581971 | 5_3:-12932938 | None:intergenic |
| GAATTAAAATCAGCATGACC+GGG | 0.582160 | 5_3:-12937109 | None:intergenic |
| ATTCTAAGGTTTGCGAAGCG+TGG | 0.583526 | 5_3:+12938119 | Msa0799650:CDS |
| TACAGACTGCTGTCATGATG+GGG | 0.586308 | 5_3:+12935692 | Msa0799650:CDS |
| TGTAAATAACAGCAAACAGA+GGG | 0.594190 | 5_3:+12937298 | Msa0799650:CDS |
| TGTCCGTGGCCGAAGATCAG+AGG | 0.608913 | 5_3:-12936892 | None:intergenic |
| TTGAATTGAATGCTTATATG+GGG | 0.610807 | 5_3:-12932761 | None:intergenic |
| GTCCCATCTGGAAACTCCAA+CGG | 0.610879 | 5_3:-12935803 | None:intergenic |
| ACATAATCGGGGAAGTTGGA+GGG | 0.610981 | 5_3:-12932853 | None:intergenic |
| CAGCAGTCTGTAAACTGACC+CGG | 0.612527 | 5_3:-12935681 | None:intergenic |
| AGTTCCTCCGGTAAGAAGGT+TGG | 0.612682 | 5_3:+12935860 | Msa0799650:CDS |
| CGAGCTGCCATTCAGACACA+AGG | 0.619307 | 5_3:+12937562 | Msa0799650:CDS |
| TTGCGGAACTTCACAAGGAG+TGG | 0.624607 | 5_3:+12938142 | Msa0799650:CDS |
| TATTACACCCAGCACAAAGT+GGG | 0.625935 | 5_3:+12937322 | Msa0799650:CDS |
| ATGCTGCCAGTAGGTAATGG+AGG | 0.626369 | 5_3:-12935914 | None:intergenic |
| ACTTTCATCTCCGATAGTAA+CGG | 0.628715 | 5_3:+12932803 | Msa0799650:five_prime_UTR |
| ACCCGGAATAGGAAATGCAA+AGG | 0.631836 | 5_3:-12935664 | None:intergenic |
| GTGTTACATACTAACTACCC+CGG | 0.635264 | 5_3:+12937091 | Msa0799650:CDS |
| ATAACAATGTCCAACTTCAG+GGG | 0.646983 | 5_3:-12933881 | None:intergenic |
| ATTCTTGTAGGAAATACTTG+GGG | 0.654576 | 5_3:+12937531 | Msa0799650:intron |
| CATCATGATAACCCAGACAA+AGG | 0.662970 | 5_3:-12938373 | None:intergenic |
| ATGTAAATAACAGCAAACAG+AGG | 0.665253 | 5_3:+12937297 | Msa0799650:CDS |
| CACACCAACCTTCTTACCGG+AGG | 0.683590 | 5_3:-12935864 | None:intergenic |
| ACAGACTGCTGTCATGATGG+GGG | 0.684198 | 5_3:+12935693 | Msa0799650:CDS |
| GGGTCTCTGCAACATAATCG+GGG | 0.684538 | 5_3:-12932864 | None:intergenic |
| TCCATGTAAATGCTGCCAGT+AGG | 0.688788 | 5_3:-12935923 | None:intergenic |
| AATTAAAATCAGCATGACCG+GGG | 0.689111 | 5_3:-12937108 | None:intergenic |
| TTATTACACCCAGCACAAAG+TGG | 0.689380 | 5_3:+12937321 | Msa0799650:CDS |
| TCTCCGCAGATAGTTGTCCG+TGG | 0.695489 | 5_3:-12936906 | None:intergenic |
| CGGCCACGGACAACTATCTG+CGG | 0.712852 | 5_3:+12936903 | Msa0799650:CDS |
| AACTATCATATATAGAAACG+CGG | 0.714215 | 5_3:-12935841 | None:intergenic |
| GCAGCCGAATTTGTATGATG+TGG | 0.725515 | 5_3:+12933410 | Msa0799650:CDS |
| GGATGTTAAGCTCACCTGTG+GGG | 0.778877 | 5_3:-12936166 | None:intergenic |
| ACTGAACTAGGACGTCCCTG+CGG | 0.782286 | 5_3:+12936327 | Msa0799650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAAATCAAATTAAT+CGG | - | chr5_3:12933100-12933119 | None:intergenic | 10.0% |
| !!! | TATTTTATTATTGCATTAAT+AGG | + | chr5_3:12934080-12934099 | Msa0799650:intron | 10.0% |
| !!! | TTAAATTGATAATTTTTGTT+TGG | - | chr5_3:12936727-12936746 | None:intergenic | 10.0% |
| !! | TAAATAGAACTTATAAAGTT+TGG | + | chr5_3:12934528-12934547 | Msa0799650:intron | 15.0% |
| !! | TTACATCAAATATTTCAATA+AGG | - | chr5_3:12935074-12935093 | None:intergenic | 15.0% |
| !!! | TTTATTTCAACTTTTATGAA+AGG | + | chr5_3:12935308-12935327 | Msa0799650:intron | 15.0% |
| !! | TTTCATAATAAAAGTTAGTT+TGG | - | chr5_3:12935414-12935433 | None:intergenic | 15.0% |
| !! | GATAAAGAATAATAATAAAG+TGG | - | chr5_3:12936261-12936280 | None:intergenic | 15.0% |
| !!! | TTTTAAGAACTAGTAATTTA+TGG | - | chr5_3:12936372-12936391 | None:intergenic | 15.0% |
| !!! | AAATTACTAGTTCTTAAAAA+TGG | + | chr5_3:12936373-12936392 | Msa0799650:intron | 15.0% |
| !! | GAAATTGAATTTATATTTAC+TGG | - | chr5_3:12936569-12936588 | None:intergenic | 15.0% |
| !! | AAAATACAAAACATATAAGA+GGG | - | chr5_3:12937047-12937066 | None:intergenic | 15.0% |
| !! | TATAATAATATAGCATGTAA+TGG | + | chr5_3:12937508-12937527 | Msa0799650:intron | 15.0% |
| !!! | AACTAACAAGTTTTTGTTTT+TGG | - | chr5_3:12932674-12932693 | None:intergenic | 20.0% |
| !! | TTTAGATTGGAAATGATATT+TGG | - | chr5_3:12932718-12932737 | None:intergenic | 20.0% |
| !! | TAAATAATGTTAGAAACTAG+AGG | + | chr5_3:12933508-12933527 | Msa0799650:intron | 20.0% |
| !! | AGGTTTATTTATGTTTACAA+TGG | + | chr5_3:12933830-12933849 | Msa0799650:intron | 20.0% |
| !! | AGAATGTCACAATTTATTTA+TGG | + | chr5_3:12934131-12934150 | Msa0799650:intron | 20.0% |
| !! | GAATGTCACAATTTATTTAT+GGG | + | chr5_3:12934132-12934151 | Msa0799650:intron | 20.0% |
| !!! | TTTATTTCTCCAATTTCATT+GGG | + | chr5_3:12934720-12934739 | Msa0799650:intron | 20.0% |
| !! | TTGAAATATTTGATGTAAAG+CGG | + | chr5_3:12935076-12935095 | Msa0799650:intron | 20.0% |
| !! | AATAGAATATTATAGTACCA+AGG | - | chr5_3:12935352-12935371 | None:intergenic | 20.0% |
| !!! | ATAAGTATTGGTCTTTATTT+TGG | + | chr5_3:12935577-12935596 | Msa0799650:intron | 20.0% |
| !! | TATTCCACATTAAAATATTC+TGG | + | chr5_3:12935606-12935625 | Msa0799650:intron | 20.0% |
| !!! | TTAACCAGAATATTTTAATG+TGG | - | chr5_3:12935613-12935632 | None:intergenic | 20.0% |
| !!! | ATTCTGGTTAATATTTTTCT+TGG | + | chr5_3:12935622-12935641 | Msa0799650:intron | 20.0% |
| !! | TTTCATAATGAAAAGAAACA+AGG | - | chr5_3:12935774-12935793 | None:intergenic | 20.0% |
| !!! | GTATAACTAACAATTTTGAT+TGG | - | chr5_3:12936190-12936209 | None:intergenic | 20.0% |
| !! | AAGAATAATAATAAAGTGGA+AGG | - | chr5_3:12936257-12936276 | None:intergenic | 20.0% |
| !! | TAGTTCTTAAAAATGGAATA+TGG | + | chr5_3:12936380-12936399 | Msa0799650:intron | 20.0% |
| !!! | TTTTATAATTACTTTACTCG+TGG | + | chr5_3:12936933-12936952 | Msa0799650:CDS | 20.0% |
| !! | GAAAATACAAAACATATAAG+AGG | - | chr5_3:12937048-12937067 | None:intergenic | 20.0% |
| !!! | TAAAATGCATGAAGTAATTT+TGG | + | chr5_3:12937450-12937469 | Msa0799650:intron | 20.0% |
| !!! | AAAATGCATGAAGTAATTTT+GGG | + | chr5_3:12937451-12937470 | Msa0799650:intron | 20.0% |
| !!! | TTATCAAAATATTGCTTTTG+AGG | + | chr5_3:12937624-12937643 | Msa0799650:CDS | 20.0% |
| !!! | GCTATTTAATTTGAATAAAG+TGG | - | chr5_3:12937843-12937862 | None:intergenic | 20.0% |
| !! | GAGTTAAGAAAAGAAAATTA+AGG | - | chr5_3:12937875-12937894 | None:intergenic | 20.0% |
| ! | CAAATAAATAACGCTAATGT+GGG | + | chr5_3:12932603-12932622 | Msa0799650:five_prime_UTR | 25.0% |
| ! | ATTGGAAATGATATTTGGTT+TGG | - | chr5_3:12932713-12932732 | None:intergenic | 25.0% |
| !!! | CTATTGGTTTAGATTTAGAT+TGG | - | chr5_3:12932731-12932750 | None:intergenic | 25.0% |
| ! | TTGAATTGAATGCTTATATG+GGG | - | chr5_3:12932764-12932783 | None:intergenic | 25.0% |
| ! | GTTGAATTGAATGCTTATAT+GGG | - | chr5_3:12932765-12932784 | None:intergenic | 25.0% |
| ! | TGTTGAATTGAATGCTTATA+TGG | - | chr5_3:12932766-12932785 | None:intergenic | 25.0% |
| ! | GATGAATGTAATAATCGAAT+TGG | - | chr5_3:12932992-12933011 | None:intergenic | 25.0% |
| !! | GAAATGAAGTTTGTGTTATT+GGG | + | chr5_3:12933284-12933303 | Msa0799650:intron | 25.0% |
| !! | TTGTTTTCTTTGTGATGTTT+AGG | + | chr5_3:12933351-12933370 | Msa0799650:intron | 25.0% |
| !! | TGTTTTCTTTGTGATGTTTA+GGG | + | chr5_3:12933352-12933371 | Msa0799650:intron | 25.0% |
| ! | CGGTTAATAATTTGAGAAAA+TGG | - | chr5_3:12933735-12933754 | None:intergenic | 25.0% |
| ! | AACAGGTAAAAATCAATTGT+TGG | - | chr5_3:12933983-12934002 | None:intergenic | 25.0% |
| ! | TTATTTATGGGAACTATCAT+TGG | + | chr5_3:12934144-12934163 | Msa0799650:intron | 25.0% |
| ! | GCACGAATTATTATCAATAT+AGG | + | chr5_3:12934190-12934209 | Msa0799650:intron | 25.0% |
| ! | TTTGATACCATCTTAAGTTT+CGG | - | chr5_3:12934394-12934413 | None:intergenic | 25.0% |
| ! | TTCATTATTATTCTCTTACC+AGG | - | chr5_3:12934616-12934635 | None:intergenic | 25.0% |
| ! | ATAATAATGAAAACCGTGTA+AGG | + | chr5_3:12934625-12934644 | Msa0799650:intron | 25.0% |
| !! | CTTTATTTCTCCAATTTCAT+TGG | + | chr5_3:12934719-12934738 | Msa0799650:intron | 25.0% |
| !! | TTATTTCTCCAATTTCATTG+GGG | + | chr5_3:12934721-12934740 | Msa0799650:intron | 25.0% |
| ! | ATAGATTGTAGCAAAATTGT+AGG | - | chr5_3:12935147-12935166 | None:intergenic | 25.0% |
| ! | GAAGAACCAAAATAATAACT+AGG | - | chr5_3:12935209-12935228 | None:intergenic | 25.0% |
| !!! | TATTGTTTTTAAAGACTCCT+TGG | + | chr5_3:12935332-12935351 | Msa0799650:intron | 25.0% |
| ! | TTGAAAAGAATATCAGTTAG+GGG | - | chr5_3:12935437-12935456 | None:intergenic | 25.0% |
| ! | GTTGAAAAGAATATCAGTTA+GGG | - | chr5_3:12935438-12935457 | None:intergenic | 25.0% |
| ! | AGTTGAAAAGAATATCAGTT+AGG | - | chr5_3:12935439-12935458 | None:intergenic | 25.0% |
| !! | TGATATTCTTTTCAACTTCT+AGG | + | chr5_3:12935442-12935461 | Msa0799650:intron | 25.0% |
| !! | GATATTCTTTTCAACTTCTA+GGG | + | chr5_3:12935443-12935462 | Msa0799650:intron | 25.0% |
| !! | ATATTCTTTTCAACTTCTAG+GGG | + | chr5_3:12935444-12935463 | Msa0799650:intron | 25.0% |
| !!! | TTTTTCTTGGTTTGTTCTTT+AGG | + | chr5_3:12935635-12935654 | Msa0799650:intron | 25.0% |
| !!! | TTTTCTTGGTTTGTTCTTTA+GGG | + | chr5_3:12935636-12935655 | Msa0799650:intron | 25.0% |
| !! | GTTTCTTTTCATTATGAAAG+TGG | + | chr5_3:12935775-12935794 | Msa0799650:intron | 25.0% |
| ! | AACTATCATATATAGAAACG+CGG | - | chr5_3:12935844-12935863 | None:intergenic | 25.0% |
| !! | ATTATTCTTTATCTGAAACG+AGG | + | chr5_3:12936268-12936287 | Msa0799650:intron | 25.0% |
| !! | ATCAAAATTTCAATTTTCCC+TGG | - | chr5_3:12936497-12936516 | None:intergenic | 25.0% |
| ! | CTATGATCCATTAAAATATC+AGG | - | chr5_3:12936615-12936634 | None:intergenic | 25.0% |
| !!! | CTGATATTTTAATGGATCAT+AGG | + | chr5_3:12936613-12936632 | Msa0799650:intron | 25.0% |
| !!! | ATATTTTAATGGATCATAGG+AGG | + | chr5_3:12936616-12936635 | Msa0799650:intron | 25.0% |
| ! | AATAAAAGATTGCTTACCAT+CGG | - | chr5_3:12937167-12937186 | None:intergenic | 25.0% |
| !!! | ATTTTTTGCTGTGAAAAAAG+TGG | + | chr5_3:12937230-12937249 | Msa0799650:intron | 25.0% |
| ! | CAACATGAAACATCATTATA+AGG | - | chr5_3:12937392-12937411 | None:intergenic | 25.0% |
| ! | CTTATAATGATGTTTCATGT+TGG | + | chr5_3:12937390-12937409 | Msa0799650:intron | 25.0% |
| ! | TTTAATAGTCCAGTCTATTA+TGG | + | chr5_3:12937681-12937700 | Msa0799650:intron | 25.0% |
| !! | AATCACAAAAGTATAGCTTA+GGG | - | chr5_3:12937721-12937740 | None:intergenic | 25.0% |
| !! | AAATCACAAAAGTATAGCTT+AGG | - | chr5_3:12937722-12937741 | None:intergenic | 25.0% |
| !!! | TATACTTTTGTGATTTTAGC+AGG | + | chr5_3:12937726-12937745 | Msa0799650:intron | 25.0% |
| !! | TTTTCTTAACTCGTAGTTAT+TGG | + | chr5_3:12937883-12937902 | Msa0799650:intron | 25.0% |
| CCACATTAGCGTTATTTATT+TGG | - | chr5_3:12932605-12932624 | None:intergenic | 30.0% | |
| CCAAATAAATAACGCTAATG+TGG | + | chr5_3:12932602-12932621 | Msa0799650:five_prime_UTR | 30.0% | |
| !! | TATTTTAGAGATTTCTGGGT+TGG | - | chr5_3:12932833-12932852 | None:intergenic | 30.0% |
| !! | AGGGTATTTTAGAGATTTCT+GGG | - | chr5_3:12932837-12932856 | None:intergenic | 30.0% |
| AATGAAAAGAGAATTACCGA+GGG | - | chr5_3:12932966-12932985 | None:intergenic | 30.0% | |
| AAATGAAAAGAGAATTACCG+AGG | - | chr5_3:12932967-12932986 | None:intergenic | 30.0% | |
| TCGAAGAAATGAAAATGGAA+TGG | - | chr5_3:12933074-12933093 | None:intergenic | 30.0% | |
| GGATTTCGAAGAAATGAAAA+TGG | - | chr5_3:12933079-12933098 | None:intergenic | 30.0% | |
| GTTAGCGCGTTTATAAATTT+AGG | + | chr5_3:12933149-12933168 | Msa0799650:intron | 30.0% | |
| CGAAATGAAGTTTGTGTTAT+TGG | + | chr5_3:12933283-12933302 | Msa0799650:intron | 30.0% | |
| AGCACAAAAAGTCAAAAAGT+AGG | + | chr5_3:12933568-12933587 | Msa0799650:intron | 30.0% | |
| GAATTGAAAAAACTACAGTG+TGG | - | chr5_3:12933604-12933623 | None:intergenic | 30.0% | |
| !!! | CTGTAGTTTTTTCAATTCTG+TGG | + | chr5_3:12933606-12933625 | Msa0799650:intron | 30.0% |
| !! | TTTTTCAATTCTGTGGTAAC+CGG | + | chr5_3:12933613-12933632 | Msa0799650:intron | 30.0% |
| !! | CTATATTTTTACTTTGTGCG+AGG | + | chr5_3:12933810-12933829 | Msa0799650:intron | 30.0% |
| AATAACAATGTCCAACTTCA+GGG | - | chr5_3:12933885-12933904 | None:intergenic | 30.0% | |
| TAATAACAATGTCCAACTTC+AGG | - | chr5_3:12933886-12933905 | None:intergenic | 30.0% | |
| AATTGTTGGTATCCTAAAGA+GGG | - | chr5_3:12933969-12933988 | None:intergenic | 30.0% | |
| ! | ATAGTTCTACATAGATTCCA+TGG | - | chr5_3:12934260-12934279 | None:intergenic | 30.0% |
| TGGAATCTATGTAGAACTAT+CGG | + | chr5_3:12934260-12934279 | Msa0799650:intron | 30.0% | |
| ! | AAGCTTTGTAAGCTCTATTT+AGG | - | chr5_3:12934321-12934340 | None:intergenic | 30.0% |
| AAATAGAGCTTACAAAGCTT+TGG | + | chr5_3:12934321-12934340 | Msa0799650:intron | 30.0% | |
| ! | ACCTTACAAGTCAATTTTGT+GGG | + | chr5_3:12934359-12934378 | Msa0799650:intron | 30.0% |
| TTGATACCATCTTAAGTTTC+GGG | - | chr5_3:12934393-12934412 | None:intergenic | 30.0% | |
| GTCTATCTTAAACCAGTTAT+CGG | + | chr5_3:12934414-12934433 | Msa0799650:intron | 30.0% | |
| TCTATCTTAAACCAGTTATC+GGG | + | chr5_3:12934415-12934434 | Msa0799650:intron | 30.0% | |
| CAAAATCAGTTTGTAAAGTG+AGG | - | chr5_3:12934559-12934578 | None:intergenic | 30.0% | |
| TATTTCTCCAATTTCATTGG+GGG | + | chr5_3:12934722-12934741 | Msa0799650:intron | 30.0% | |
| GCTATTCTACTTCTTTGATT+GGG | + | chr5_3:12935109-12935128 | Msa0799650:intron | 30.0% | |
| ! | GCACTTCCTAGTTATTATTT+TGG | + | chr5_3:12935200-12935219 | Msa0799650:intron | 30.0% |
| TCCAAAAAGTCATTGTAAGT+AGG | + | chr5_3:12935232-12935251 | Msa0799650:intron | 30.0% | |
| !! | TTTCTTGGTTTGTTCTTTAG+GGG | + | chr5_3:12935637-12935656 | Msa0799650:intron | 30.0% |
| TCTATATATGATAGTTCCTC+CGG | + | chr5_3:12935848-12935867 | Msa0799650:CDS | 30.0% | |
| TTTAGTACAACACCTTTAGT+TGG | + | chr5_3:12936012-12936031 | Msa0799650:intron | 30.0% | |
| TTCTTTCTCTGTTATATAGC+TGG | + | chr5_3:12936092-12936111 | Msa0799650:intron | 30.0% | |
| TCTTTCTCTGTTATATAGCT+GGG | + | chr5_3:12936093-12936112 | Msa0799650:intron | 30.0% | |
| ! | ATGGAATATGGATCTTTTGT+AGG | + | chr5_3:12936392-12936411 | Msa0799650:intron | 30.0% |
| ! | GATCTTTTGTAGGATTTTTG+TGG | + | chr5_3:12936402-12936421 | Msa0799650:intron | 30.0% |
| TGATCCATTAAAATATCAGG+TGG | - | chr5_3:12936612-12936631 | None:intergenic | 30.0% | |
| GAATGAGTATTTCCTTTGTT+TGG | + | chr5_3:12936821-12936840 | Msa0799650:intron | 30.0% | |
| TGTATAGATAGAGAAGAATG+TGG | - | chr5_3:12936996-12937015 | None:intergenic | 30.0% | |
| AGAATTAAAATCAGCATGAC+CGG | - | chr5_3:12937113-12937132 | None:intergenic | 30.0% | |
| TTGCATTGCAGTATTTAGAT+TGG | + | chr5_3:12937186-12937205 | Msa0799650:intron | 30.0% | |
| ATGTAAATAACAGCAAACAG+AGG | + | chr5_3:12937297-12937316 | Msa0799650:CDS | 30.0% | |
| TGTAAATAACAGCAAACAGA+GGG | + | chr5_3:12937298-12937317 | Msa0799650:CDS | 30.0% | |
| ATAAGGCAAAGCATACAATT+TGG | - | chr5_3:12937375-12937394 | None:intergenic | 30.0% | |
| GATTCTTGTAGGAAATACTT+GGG | + | chr5_3:12937530-12937549 | Msa0799650:intron | 30.0% | |
| ATTCTTGTAGGAAATACTTG+GGG | + | chr5_3:12937531-12937550 | Msa0799650:intron | 30.0% | |
| !! | TTTGGTTCTACTCTTGTATA+TGG | + | chr5_3:12937601-12937620 | Msa0799650:CDS | 30.0% |
| TAACTCATTCTTTGTGCTTA+TGG | + | chr5_3:12937647-12937666 | Msa0799650:intron | 30.0% | |
| ! | ATCACAAAAGTATAGCTTAG+GGG | - | chr5_3:12937720-12937739 | None:intergenic | 30.0% |
| AAATATACCATCATCATGAC+TGG | - | chr5_3:12937789-12937808 | None:intergenic | 30.0% | |
| !! | TGGTTGGTAAGAAATAAACT+TGG | - | chr5_3:12937924-12937943 | None:intergenic | 30.0% |
| TGGAAATATCAGGACAATAA+TGG | - | chr5_3:12937957-12937976 | None:intergenic | 30.0% | |
| CTAGACTTTGATTATACATC+AGG | + | chr5_3:12937989-12938008 | Msa0799650:intron | 30.0% | |
| TATGTTAACCTATCTATTGC+TGG | + | chr5_3:12938022-12938041 | Msa0799650:intron | 30.0% | |
| GAATTAAATGTCTTGATGCA+GGG | + | chr5_3:12938057-12938076 | Msa0799650:intron | 30.0% | |
| AATTAAATGTCTTGATGCAG+GGG | + | chr5_3:12938058-12938077 | Msa0799650:intron | 30.0% | |
| AAATAACGCTAATGTGGGTT+TGG | + | chr5_3:12932608-12932627 | Msa0799650:five_prime_UTR | 35.0% | |
| AATAACGCTAATGTGGGTTT+GGG | + | chr5_3:12932609-12932628 | Msa0799650:five_prime_UTR | 35.0% | |
| ATTGAATGCTTATATGGGGT+TGG | - | chr5_3:12932760-12932779 | None:intergenic | 35.0% | |
| ACTTTCATCTCCGATAGTAA+CGG | + | chr5_3:12932803-12932822 | Msa0799650:five_prime_UTR | 35.0% | |
| !!! | GAGGGTATTTTAGAGATTTC+TGG | - | chr5_3:12932838-12932857 | None:intergenic | 35.0% |
| GATCGGAGAATTATTCGATT+GGG | - | chr5_3:12933025-12933044 | None:intergenic | 35.0% | |
| TGATCGGAGAATTATTCGAT+TGG | - | chr5_3:12933026-12933045 | None:intergenic | 35.0% | |
| ATGGAATGGAAATGATGAAG+CGG | - | chr5_3:12933060-12933079 | None:intergenic | 35.0% | |
| ! | AATGTTGTTGTTAAGTGCTG+TGG | + | chr5_3:12933226-12933245 | Msa0799650:intron | 35.0% |
| ! | TGTGTTATTGGGAATCTTGT+TGG | + | chr5_3:12933295-12933314 | Msa0799650:intron | 35.0% |
| TCTTGTTGGAGTTTGAGAAT+TGG | + | chr5_3:12933309-12933328 | Msa0799650:intron | 35.0% | |
| GAATTGGTACTGTGTTTAAG+AGG | + | chr5_3:12933325-12933344 | Msa0799650:intron | 35.0% | |
| TGAGCAAATGCTTCACATAT+AGG | - | chr5_3:12933381-12933400 | None:intergenic | 35.0% | |
| TGCACCACATCATACAAATT+CGG | - | chr5_3:12933417-12933436 | None:intergenic | 35.0% | |
| !!! | GCATGTCAAGTATTTTGATG+AGG | + | chr5_3:12933434-12933453 | Msa0799650:CDS | 35.0% |
| AACTAGAGGTAACAGATTTG+TGG | + | chr5_3:12933522-12933541 | Msa0799650:intron | 35.0% | |
| GTAAAAATATAGAGCAGCAG+AGG | - | chr5_3:12933802-12933821 | None:intergenic | 35.0% | |
| TTTATGCTTTGTGCATTTGC+AGG | + | chr5_3:12933856-12933875 | Msa0799650:intron | 35.0% | |
| ATAACAATGTCCAACTTCAG+GGG | - | chr5_3:12933884-12933903 | None:intergenic | 35.0% | |
| !! | GTTATTAGCTTTCCTGATCA+TGG | + | chr5_3:12933899-12933918 | Msa0799650:CDS | 35.0% |
| !!! | TGCTTCTTTTTTCCCTCTTT+AGG | + | chr5_3:12933954-12933973 | Msa0799650:intron | 35.0% |
| CAATTGTTGGTATCCTAAAG+AGG | - | chr5_3:12933970-12933989 | None:intergenic | 35.0% | |
| ACCTGTTTAAATGCCTATTC+AGG | + | chr5_3:12933996-12934015 | Msa0799650:intron | 35.0% | |
| ACCTGAATAGGCATTTAAAC+AGG | - | chr5_3:12934000-12934019 | None:intergenic | 35.0% | |
| GGAATCTATGTAGAACTATC+GGG | + | chr5_3:12934261-12934280 | Msa0799650:intron | 35.0% | |
| ! | CACCTTACAAGTCAATTTTG+TGG | + | chr5_3:12934358-12934377 | Msa0799650:intron | 35.0% |
| ATCAGTTTGTAAAGTGAGGA+TGG | - | chr5_3:12934555-12934574 | None:intergenic | 35.0% | |
| AGAAACACAAGATCCTTACA+CGG | - | chr5_3:12934641-12934660 | None:intergenic | 35.0% | |
| ! | GCATGATATCATCTTTTCAC+AGG | - | chr5_3:12934815-12934834 | None:intergenic | 35.0% |
| AAGAAGAGAAGAGAGAAGAT+TGG | - | chr5_3:12934895-12934914 | None:intergenic | 35.0% | |
| !! | CGCAGTCTCTAAAATAGTAT+TGG | - | chr5_3:12935051-12935070 | None:intergenic | 35.0% |
| CGCTATTCTACTTCTTTGAT+TGG | + | chr5_3:12935108-12935127 | Msa0799650:intron | 35.0% | |
| AATCTATACTTGCACACAGT+TGG | + | chr5_3:12935160-12935179 | Msa0799650:intron | 35.0% | |
| ! | GCCTACTTACAATGACTTTT+TGG | - | chr5_3:12935236-12935255 | None:intergenic | 35.0% |
| TATCCTTATCGAAAATCCCT+GGG | - | chr5_3:12935524-12935543 | None:intergenic | 35.0% | |
| ACCAATACTTATGCATTACC+GGG | - | chr5_3:12935569-12935588 | None:intergenic | 35.0% | |
| GACCAATACTTATGCATTAC+CGG | - | chr5_3:12935570-12935589 | None:intergenic | 35.0% | |
| TTCCTTTGCATTTCCTATTC+CGG | + | chr5_3:12935662-12935681 | Msa0799650:CDS | 35.0% | |
| CTTTCTCTGTTATATAGCTG+GGG | + | chr5_3:12936094-12936113 | Msa0799650:intron | 35.0% | |
| TTTCTCTGTTATATAGCTGG+GGG | + | chr5_3:12936095-12936114 | Msa0799650:intron | 35.0% | |
| GAAGAATTGTACTTCACTGT+TGG | + | chr5_3:12936117-12936136 | Msa0799650:CDS | 35.0% | |
| ! | CAGTTCCACTATTGAGATTT+TGG | + | chr5_3:12936525-12936544 | Msa0799650:intron | 35.0% |
| GTACACCAAAATCTCAATAG+TGG | - | chr5_3:12936533-12936552 | None:intergenic | 35.0% | |
| CCATTAAAATATCAGGTGGA+AGG | - | chr5_3:12936608-12936627 | None:intergenic | 35.0% | |
| !! | CCTTCCACCTGATATTTTAA+TGG | + | chr5_3:12936605-12936624 | Msa0799650:intron | 35.0% |
| ! | CGAACTGACAAGTTCTTTTT+GGG | + | chr5_3:12936667-12936686 | Msa0799650:intron | 35.0% |
| TAACGTCAGAATCCAAACAA+AGG | - | chr5_3:12936836-12936855 | None:intergenic | 35.0% | |
| TAATTACTTTACTCGTGGTC+TGG | + | chr5_3:12936938-12936957 | Msa0799650:CDS | 35.0% | |
| AGATAGAGAAGAATGTGGTA+AGG | - | chr5_3:12936991-12937010 | None:intergenic | 35.0% | |
| AATTAAAATCAGCATGACCG+GGG | - | chr5_3:12937111-12937130 | None:intergenic | 35.0% | |
| GAATTAAAATCAGCATGACC+GGG | - | chr5_3:12937112-12937131 | None:intergenic | 35.0% | |
| CAAAGCATACAATTTGGAAG+GGG | - | chr5_3:12937369-12937388 | None:intergenic | 35.0% | |
| GCAAAGCATACAATTTGGAA+GGG | - | chr5_3:12937370-12937389 | None:intergenic | 35.0% | |
| !! | AGCATGTAATGGATTCTTGT+AGG | + | chr5_3:12937519-12937538 | Msa0799650:intron | 35.0% |
| GGATTCTTGTAGGAAATACT+TGG | + | chr5_3:12937529-12937548 | Msa0799650:intron | 35.0% | |
| ! | TTTTAGCAGGTGATGAAGAA+TGG | + | chr5_3:12937739-12937758 | Msa0799650:intron | 35.0% |
| TTTCTTACCAACCACAGTAT+TGG | + | chr5_3:12937930-12937949 | Msa0799650:intron | 35.0% | |
| ACAATAATGGTCCAATACTG+TGG | - | chr5_3:12937944-12937963 | None:intergenic | 35.0% | |
| GGAATTAAATGTCTTGATGC+AGG | + | chr5_3:12938056-12938075 | Msa0799650:intron | 35.0% | |
| GAATGATAGGCAGAAAGATT+AGG | - | chr5_3:12938103-12938122 | None:intergenic | 35.0% | |
| TCTTTCTGCCTATCATTCTA+AGG | + | chr5_3:12938105-12938124 | Msa0799650:CDS | 35.0% | |
| TTCGCAAACCTTAGAATGAT+AGG | - | chr5_3:12938116-12938135 | None:intergenic | 35.0% | |
| TCTTACAAAGTGAAACCATC+TGG | - | chr5_3:12938347-12938366 | None:intergenic | 35.0% | |
| TAAGATTCTCTCCTTTGTCT+GGG | + | chr5_3:12938362-12938381 | Msa0799650:three_prime_UTR | 35.0% | |
| GGTTGGAATTCCGTTACTAT+CGG | - | chr5_3:12932816-12932835 | None:intergenic | 40.0% | |
| AGCGGAATTCGGAAATTGAT+CGG | - | chr5_3:12933042-12933061 | None:intergenic | 40.0% | |
| GGAAATGATGAAGCGGAATT+CGG | - | chr5_3:12933053-12933072 | None:intergenic | 40.0% | |
| AGGCAAAACCATCAATAAGC+CGG | - | chr5_3:12933641-12933660 | None:intergenic | 40.0% | |
| !! | CTTATTGATGGTTTTGCCTC+TGG | + | chr5_3:12933642-12933661 | Msa0799650:intron | 40.0% |
| ! | AGGAAGCATGAGTGTTTCAA+TGG | + | chr5_3:12934100-12934119 | Msa0799650:intron | 40.0% |
| TGTAGTGTCTTTGCATTCCA+TGG | + | chr5_3:12934240-12934259 | Msa0799650:intron | 40.0% | |
| !! | GCCCACAAAATTGACTTGTA+AGG | - | chr5_3:12934363-12934382 | None:intergenic | 40.0% |
| GTTAAGCCCGAAACTTAAGA+TGG | + | chr5_3:12934384-12934403 | Msa0799650:intron | 40.0% | |
| ATTGAACCCCAAAACCTAAG+CGG | + | chr5_3:12934588-12934607 | Msa0799650:intron | 40.0% | |
| TCCCACAGTTTACATTTGCA+CGG | - | chr5_3:12934668-12934687 | None:intergenic | 40.0% | |
| TAATCCACCCCCAATGAAAT+TGG | - | chr5_3:12934732-12934751 | None:intergenic | 40.0% | |
| !! | GGTGGATTAGTTGAAAGTGA+GGG | + | chr5_3:12934743-12934762 | Msa0799650:intron | 40.0% |
| !! | GTGGATTAGTTGAAAGTGAG+GGG | + | chr5_3:12934744-12934763 | Msa0799650:intron | 40.0% |
| TCATTGTAAGTAGGCATCTG+TGG | + | chr5_3:12935241-12935260 | Msa0799650:intron | 40.0% | |
| ACAAAAGTAGCTAGCGTTGT+TGG | - | chr5_3:12935471-12935490 | None:intergenic | 40.0% | |
| !!! | AACGCTAGCTACTTTTGTTG+CGG | + | chr5_3:12935473-12935492 | Msa0799650:intron | 40.0% |
| ! | ATACCCAGGGATTTTCGATA+AGG | + | chr5_3:12935518-12935537 | Msa0799650:intron | 40.0% |
| CTATCCTTATCGAAAATCCC+TGG | - | chr5_3:12935525-12935544 | None:intergenic | 40.0% | |
| ! | GGGATTTTCGATAAGGATAG+AGG | + | chr5_3:12935525-12935544 | Msa0799650:intron | 40.0% |
| !! | CATTTACACGCTGTTTTACC+CGG | + | chr5_3:12935548-12935567 | Msa0799650:intron | 40.0% |
| ACCCGGTAATGCATAAGTAT+TGG | + | chr5_3:12935565-12935584 | Msa0799650:intron | 40.0% | |
| TCCTTTGCATTTCCTATTCC+GGG | + | chr5_3:12935663-12935682 | Msa0799650:CDS | 40.0% | |
| TTTACAGACTGCTGTCATGA+TGG | + | chr5_3:12935690-12935709 | Msa0799650:CDS | 40.0% | |
| TTACAGACTGCTGTCATGAT+GGG | + | chr5_3:12935691-12935710 | Msa0799650:CDS | 40.0% | |
| TATGAAAGTGGAATTGCCGT+TGG | + | chr5_3:12935787-12935806 | Msa0799650:intron | 40.0% | |
| ! | TGTGGGCTCTTTAATGGATA+AGG | + | chr5_3:12935883-12935902 | Msa0799650:CDS | 40.0% |
| TAAATGCTGCCAGTAGGTAA+TGG | - | chr5_3:12935920-12935939 | None:intergenic | 40.0% | |
| AAGAGGTTCACGTTAAGGTT+TGG | + | chr5_3:12935945-12935964 | Msa0799650:intron | 40.0% | |
| AAGCTTATGCAGCCAACTAA+AGG | - | chr5_3:12936027-12936046 | None:intergenic | 40.0% | |
| CATAAGCTTTCTGCTTGTCT+TGG | + | chr5_3:12936038-12936057 | Msa0799650:intron | 40.0% | |
| TGCACCAAAAGGAATGTGTT+GGG | - | chr5_3:12936145-12936164 | None:intergenic | 40.0% | |
| ATGCACCAAAAGGAATGTGT+TGG | - | chr5_3:12936146-12936165 | None:intergenic | 40.0% | |
| ! | AAGAGAAGAAGTGAAAGCAC+GGG | - | chr5_3:12936230-12936249 | None:intergenic | 40.0% |
| CAAGAGAAGAAGTGAAAGCA+CGG | - | chr5_3:12936231-12936250 | None:intergenic | 40.0% | |
| ! | TGCTTTTGATGAATACCGCA+GGG | - | chr5_3:12936345-12936364 | None:intergenic | 40.0% |
| ! | ATCTTTACAGTTGATGCACC+AGG | + | chr5_3:12936476-12936495 | Msa0799650:intron | 40.0% |
| ! | TCTTTACAGTTGATGCACCA+GGG | + | chr5_3:12936477-12936496 | Msa0799650:intron | 40.0% |
| !! | ATCAGGTGGAAGGCATTTAT+TGG | - | chr5_3:12936598-12936617 | None:intergenic | 40.0% |
| ! | GCGAACTGACAAGTTCTTTT+TGG | + | chr5_3:12936666-12936685 | Msa0799650:intron | 40.0% |
| TTCTGACGTTATTGCTTTGC+AGG | + | chr5_3:12936845-12936864 | Msa0799650:intron | 40.0% | |
| TGCTTTGCAGGTAGATCAAA+TGG | + | chr5_3:12936857-12936876 | Msa0799650:intron | 40.0% | |
| TACATTCTGCCTCTGATCTT+CGG | + | chr5_3:12936883-12936902 | Msa0799650:CDS | 40.0% | |
| ! | GGTCTGGACATCTTATTTGA+TGG | + | chr5_3:12936954-12936973 | Msa0799650:CDS | 40.0% |
| ! | GGACATCTTATTTGATGGAC+AGG | + | chr5_3:12936959-12936978 | Msa0799650:CDS | 40.0% |
| GTGTTACATACTAACTACCC+CGG | + | chr5_3:12937091-12937110 | Msa0799650:CDS | 40.0% | |
| TTTGTCATCTATTGCTCCGA+TGG | + | chr5_3:12937148-12937167 | Msa0799650:CDS | 40.0% | |
| TTATTACACCCAGCACAAAG+TGG | + | chr5_3:12937321-12937340 | Msa0799650:CDS | 40.0% | |
| TATTACACCCAGCACAAAGT+GGG | + | chr5_3:12937322-12937341 | Msa0799650:CDS | 40.0% | |
| CACAAAGTGGGAACAAGTAA+AGG | + | chr5_3:12937334-12937353 | Msa0799650:CDS | 40.0% | |
| GGCAAAGCATACAATTTGGA+AGG | - | chr5_3:12937371-12937390 | None:intergenic | 40.0% | |
| !! | AGTTGTGAGTAGCTTTGATG+TGG | + | chr5_3:12937479-12937498 | Msa0799650:intron | 40.0% |
| !! | GTTGTGAGTAGCTTTGATGT+GGG | + | chr5_3:12937480-12937499 | Msa0799650:intron | 40.0% |
| TAGGAAATACTTGGGGATTG+TGG | + | chr5_3:12937538-12937557 | Msa0799650:intron | 40.0% | |
| AGGAAATACTTGGGGATTGT+GGG | + | chr5_3:12937539-12937558 | Msa0799650:intron | 40.0% | |
| TAATGGTCCAATACTGTGGT+TGG | - | chr5_3:12937940-12937959 | None:intergenic | 40.0% | |
| TGACAGAAGCTGGAAATATC+AGG | - | chr5_3:12937967-12937986 | None:intergenic | 40.0% | |
| AAGTCTAGTATGACAGAAGC+TGG | - | chr5_3:12937977-12937996 | None:intergenic | 40.0% | |
| TCTCATCACCAGCAATAGAT+AGG | - | chr5_3:12938033-12938052 | None:intergenic | 40.0% | |
| ACCATCATTATCGTGCGAAT+GGG | + | chr5_3:12938213-12938232 | Msa0799650:three_prime_UTR | 40.0% | |
| CCATCTGGAAGTTAAGCATT+AGG | - | chr5_3:12938332-12938351 | None:intergenic | 40.0% | |
| CCTAATGCTTAACTTCCAGA+TGG | + | chr5_3:12938329-12938348 | Msa0799650:three_prime_UTR | 40.0% | |
| GTAAGATTCTCTCCTTTGTC+TGG | + | chr5_3:12938361-12938380 | Msa0799650:three_prime_UTR | 40.0% | |
| CATCATGATAACCCAGACAA+AGG | - | chr5_3:12938376-12938395 | None:intergenic | 40.0% | |
| !! | ATGGGGTTGGTTCGTTCTAT+TGG | - | chr5_3:12932747-12932766 | None:intergenic | 45.0% |
| ACATAATCGGGGAAGTTGGA+GGG | - | chr5_3:12932856-12932875 | None:intergenic | 45.0% | |
| AACATAATCGGGGAAGTTGG+AGG | - | chr5_3:12932857-12932876 | None:intergenic | 45.0% | |
| TGCAACATAATCGGGGAAGT+TGG | - | chr5_3:12932860-12932879 | None:intergenic | 45.0% | |
| TGGGTCTCTGCAACATAATC+GGG | - | chr5_3:12932868-12932887 | None:intergenic | 45.0% | |
| CTGGGTCTCTGCAACATAAT+CGG | - | chr5_3:12932869-12932888 | None:intergenic | 45.0% | |
| AGAGAATTACCGAGGGAGAA+AGG | - | chr5_3:12932959-12932978 | None:intergenic | 45.0% | |
| GCAGCCGAATTTGTATGATG+TGG | + | chr5_3:12933410-12933429 | Msa0799650:CDS | 45.0% | |
| AATTCTGTGGTAACCGGAAC+CGG | + | chr5_3:12933619-12933638 | Msa0799650:intron | 45.0% | |
| ! | AACCATCAATAAGCCGGTTC+CGG | - | chr5_3:12933635-12933654 | None:intergenic | 45.0% |
| AGAGCTATGAAACACGGACA+CGG | - | chr5_3:12933774-12933793 | None:intergenic | 45.0% | |
| CGGAGATGAAAACCATGATC+AGG | - | chr5_3:12933914-12933933 | None:intergenic | 45.0% | |
| TTCATCTCCGTTTCGATCCA+TGG | + | chr5_3:12933924-12933943 | Msa0799650:CDS | 45.0% | |
| !! | AAAAGAAGCACCTGAGACCA+TGG | - | chr5_3:12933944-12933963 | None:intergenic | 45.0% |
| ! | TTGGCGCTTTAGTTCAGTGT+TGG | + | chr5_3:12934163-12934182 | Msa0799650:intron | 45.0% |
| ! | TGGCGCTTTAGTTCAGTGTT+GGG | + | chr5_3:12934164-12934183 | Msa0799650:intron | 45.0% |
| GAAAAGTCCAACTCCCACAT+CGG | + | chr5_3:12934283-12934302 | Msa0799650:intron | 45.0% | |
| ! | TCCCACATCGGTTAGAGATA+TGG | + | chr5_3:12934295-12934314 | Msa0799650:intron | 45.0% |
| GCCATATCTCTAACCGATGT+GGG | - | chr5_3:12934299-12934318 | None:intergenic | 45.0% | |
| GTCAGCTGCATGGATAATGT+GGG | - | chr5_3:12934444-12934463 | None:intergenic | 45.0% | |
| TCCCGTGCAAATGTAAACTG+TGG | + | chr5_3:12934663-12934682 | Msa0799650:intron | 45.0% | |
| CCCACAGTTTACATTTGCAC+GGG | - | chr5_3:12934667-12934686 | None:intergenic | 45.0% | |
| CCCGTGCAAATGTAAACTGT+GGG | + | chr5_3:12934664-12934683 | Msa0799650:intron | 45.0% | |
| TTCTCCAATTTCATTGGGGG+TGG | + | chr5_3:12934725-12934744 | Msa0799650:intron | 45.0% | |
| !! | GGGTGGATTAGTTGAAAGTG+AGG | + | chr5_3:12934742-12934761 | Msa0799650:intron | 45.0% |
| AGAACTGCTACATACAGCTG+AGG | - | chr5_3:12934936-12934955 | None:intergenic | 45.0% | |
| TTGCGGTGTATGCACTGTTT+GGG | + | chr5_3:12935490-12935509 | Msa0799650:intron | 45.0% | |
| TCGAAAATCCCTGGGTATGT+GGG | - | chr5_3:12935516-12935535 | None:intergenic | 45.0% | |
| ATCGAAAATCCCTGGGTATG+TGG | - | chr5_3:12935517-12935536 | None:intergenic | 45.0% | |
| ACCCGGAATAGGAAATGCAA+AGG | - | chr5_3:12935667-12935686 | None:intergenic | 45.0% | |
| TCTGTAAACTGACCCGGAAT+AGG | - | chr5_3:12935678-12935697 | None:intergenic | 45.0% | |
| TACAGACTGCTGTCATGATG+GGG | + | chr5_3:12935692-12935711 | Msa0799650:CDS | 45.0% | |
| ATAGAAACGCGGCATGTAAC+TGG | - | chr5_3:12935833-12935852 | None:intergenic | 45.0% | |
| TGATAGTTCCTCCGGTAAGA+AGG | + | chr5_3:12935856-12935875 | Msa0799650:CDS | 45.0% | |
| ACCTACTGGCAGCATTTACA+TGG | + | chr5_3:12935922-12935941 | Msa0799650:CDS | 45.0% | |
| TCCATGTAAATGCTGCCAGT+AGG | - | chr5_3:12935926-12935945 | None:intergenic | 45.0% | |
| TGGCAGCATTTACATGGAAG+AGG | + | chr5_3:12935928-12935947 | Msa0799650:CDS | 45.0% | |
| CATGGAAGAGGTTCACGTTA+AGG | + | chr5_3:12935940-12935959 | Msa0799650:CDS | 45.0% | |
| TGGATGTTAAGCTCACCTGT+GGG | - | chr5_3:12936170-12936189 | None:intergenic | 45.0% | |
| TTGGATGTTAAGCTCACCTG+TGG | - | chr5_3:12936171-12936190 | None:intergenic | 45.0% | |
| ! | ACCATGCTTCTGTTTTACGC+AGG | + | chr5_3:12936296-12936315 | Msa0799650:intron | 45.0% |
| TCCTGCGTAAAACAGAAGCA+TGG | - | chr5_3:12936300-12936319 | None:intergenic | 45.0% | |
| ! | TCTGTTTTACGCAGGATGTG+TGG | + | chr5_3:12936304-12936323 | Msa0799650:intron | 45.0% |
| !! | CTGCTTTTGATGAATACCGC+AGG | - | chr5_3:12936346-12936365 | None:intergenic | 45.0% |
| CTGCGGTATTCATCAAAAGC+AGG | + | chr5_3:12936344-12936363 | Msa0799650:CDS | 45.0% | |
| GCTAAAACACAGCAGTCAGT+TGG | - | chr5_3:12936648-12936667 | None:intergenic | 45.0% | |
| ! | GGTAGAGCGCTCTAAATACT+GGG | + | chr5_3:12936688-12936707 | Msa0799650:intron | 45.0% |
| ! | CGCTCTAAATACTGGGAGTT+GGG | + | chr5_3:12936695-12936714 | Msa0799650:intron | 45.0% |
| CTAAATACTGGGAGTTGGGA+TGG | + | chr5_3:12936699-12936718 | Msa0799650:intron | 45.0% | |
| TGAAAAGATCCTCCAACAGC+TGG | - | chr5_3:12937275-12937294 | None:intergenic | 45.0% | |
| ! | AGCTGTTGGAGGATCTTTTC+AGG | + | chr5_3:12937274-12937293 | Msa0799650:intron | 45.0% |
| ACTTGTTCCCACTTTGTGCT+GGG | - | chr5_3:12937332-12937351 | None:intergenic | 45.0% | |
| TACTTGTTCCCACTTTGTGC+TGG | - | chr5_3:12937333-12937352 | None:intergenic | 45.0% | |
| TCACAGGCACCATAATAGAC+TGG | - | chr5_3:12937693-12937712 | None:intergenic | 45.0% | |
| CTCTCTTCCAGTCATGATGA+TGG | + | chr5_3:12937779-12937798 | Msa0799650:intron | 45.0% | |
| ! | CTATTGCTGGTGATGAGACT+TGG | + | chr5_3:12938035-12938054 | Msa0799650:intron | 45.0% |
| !! | ATTCTAAGGTTTGCGAAGCG+TGG | + | chr5_3:12938119-12938138 | Msa0799650:CDS | 45.0% |
| CACCATCATTATCGTGCGAA+TGG | + | chr5_3:12938212-12938231 | Msa0799650:three_prime_UTR | 45.0% | |
| !! | ATTATCGTGCGAATGGGCTA+TGG | + | chr5_3:12938219-12938238 | Msa0799650:three_prime_UTR | 45.0% |
| AACGCTAATGTGGGTTTGGG+TGG | + | chr5_3:12932612-12932631 | Msa0799650:five_prime_UTR | 50.0% | |
| GGGTCTCTGCAACATAATCG+GGG | - | chr5_3:12932867-12932886 | None:intergenic | 50.0% | |
| ATCGTTCTCGATCTTCGTCC+CGG | + | chr5_3:12932920-12932939 | Msa0799650:CDS | 50.0% | |
| ! | AACCGGAACCGGCTTATTGA+TGG | + | chr5_3:12933630-12933649 | Msa0799650:intron | 50.0% |
| CACATGTGTCAGTGTCGTGT+TGG | - | chr5_3:12933680-12933699 | None:intergenic | 50.0% | |
| GTGTCCGTGTTTCATAGCTC+TGG | + | chr5_3:12933773-12933792 | Msa0799650:intron | 50.0% | |
| !! | TCCGTGTTTCATAGCTCTGG+AGG | + | chr5_3:12933776-12933795 | Msa0799650:intron | 50.0% |
| GCCTCCAGAGCTATGAAACA+CGG | - | chr5_3:12933780-12933799 | None:intergenic | 50.0% | |
| TTTGCAGGAACCCCTGAAGT+TGG | + | chr5_3:12933871-12933890 | Msa0799650:intron | 50.0% | |
| CCTGAGACCATGGATCGAAA+CGG | - | chr5_3:12933934-12933953 | None:intergenic | 50.0% | |
| ! | GGCGCTTTAGTTCAGTGTTG+GGG | + | chr5_3:12934165-12934184 | Msa0799650:intron | 50.0% |
| TCTCTAACCGATGTGGGAGT+TGG | - | chr5_3:12934293-12934312 | None:intergenic | 50.0% | |
| GGCCATATCTCTAACCGATG+TGG | - | chr5_3:12934300-12934319 | None:intergenic | 50.0% | |
| AATGTGGGAAGCCCGATAAC+TGG | - | chr5_3:12934429-12934448 | None:intergenic | 50.0% | |
| GGTCAGCTGCATGGATAATG+TGG | - | chr5_3:12934445-12934464 | None:intergenic | 50.0% | |
| AATACACTGTGTCACGCCCA+AGG | - | chr5_3:12934474-12934493 | None:intergenic | 50.0% | |
| TTGGGCGTGACACAGTGTAT+TGG | + | chr5_3:12934473-12934492 | Msa0799650:intron | 50.0% | |
| TGGGCGTGACACAGTGTATT+GGG | + | chr5_3:12934474-12934493 | Msa0799650:intron | 50.0% | |
| ! | CAGGTTCCGCTTAGGTTTTG+GGG | - | chr5_3:12934597-12934616 | None:intergenic | 50.0% |
| ! | CCAGGTTCCGCTTAGGTTTT+GGG | - | chr5_3:12934598-12934617 | None:intergenic | 50.0% |
| ! | ACCAGGTTCCGCTTAGGTTT+TGG | - | chr5_3:12934599-12934618 | None:intergenic | 50.0% |
| TCTCTTACCAGGTTCCGCTT+AGG | - | chr5_3:12934605-12934624 | None:intergenic | 50.0% | |
| !! | GTGAGGGGTTTTTCGACACT+AGG | + | chr5_3:12934759-12934778 | Msa0799650:intron | 50.0% |
| CTGCTACATACAGCTGAGGT+TGG | - | chr5_3:12934932-12934951 | None:intergenic | 50.0% | |
| GTTGCGGTGTATGCACTGTT+TGG | + | chr5_3:12935489-12935508 | Msa0799650:intron | 50.0% | |
| CAGCAGTCTGTAAACTGACC+CGG | - | chr5_3:12935684-12935703 | None:intergenic | 50.0% | |
| ACAGACTGCTGTCATGATGG+GGG | + | chr5_3:12935693-12935712 | Msa0799650:CDS | 50.0% | |
| TTGCCGTTGGAGTTTCCAGA+TGG | + | chr5_3:12935800-12935819 | Msa0799650:CDS | 50.0% | |
| TGCCGTTGGAGTTTCCAGAT+GGG | + | chr5_3:12935801-12935820 | Msa0799650:CDS | 50.0% | |
| GTCCCATCTGGAAACTCCAA+CGG | - | chr5_3:12935806-12935825 | None:intergenic | 50.0% | |
| AGTTCCTCCGGTAAGAAGGT+TGG | + | chr5_3:12935860-12935879 | Msa0799650:CDS | 50.0% | |
| !! | TCCGGTAAGAAGGTTGGTGT+GGG | + | chr5_3:12935866-12935885 | Msa0799650:CDS | 50.0% |
| ! | GGTTGGTGTGGGCTCTTTAA+TGG | + | chr5_3:12935877-12935896 | Msa0799650:CDS | 50.0% |
| TCTGCTCCTCCATTACCTAC+TGG | + | chr5_3:12935908-12935927 | Msa0799650:CDS | 50.0% | |
| ! | ATGCTGCCAGTAGGTAATGG+AGG | - | chr5_3:12935917-12935936 | None:intergenic | 50.0% |
| GCTTTCTGCTTGTCTTGGCA+AGG | + | chr5_3:12936043-12936062 | Msa0799650:intron | 50.0% | |
| ! | GGCTCCCAACACATTCCTTT+TGG | + | chr5_3:12936138-12936157 | Msa0799650:CDS | 50.0% |
| GGATGTTAAGCTCACCTGTG+GGG | - | chr5_3:12936169-12936188 | None:intergenic | 50.0% | |
| ! | CAGGATGTGTGGACTGAACT+AGG | + | chr5_3:12936315-12936334 | Msa0799650:intron | 50.0% |
| AACACAGCAGTCAGTTGGCT+AGG | - | chr5_3:12936643-12936662 | None:intergenic | 50.0% | |
| ! | GGGTAGAGCGCTCTAAATAC+TGG | + | chr5_3:12936687-12936706 | Msa0799650:intron | 50.0% |
| ! | GCGCTCTAAATACTGGGAGT+TGG | + | chr5_3:12936694-12936713 | Msa0799650:intron | 50.0% |
| ! | TTTTCCCCCTTTCCAGCTGT+TGG | + | chr5_3:12937260-12937279 | Msa0799650:intron | 50.0% |
| ATCCTCCAACAGCTGGAAAG+GGG | - | chr5_3:12937268-12937287 | None:intergenic | 50.0% | |
| GATCCTCCAACAGCTGGAAA+GGG | - | chr5_3:12937269-12937288 | None:intergenic | 50.0% | |
| AGATCCTCCAACAGCTGGAA+AGG | - | chr5_3:12937270-12937289 | None:intergenic | 50.0% | |
| GGCAGAACCTTGTGTCTGAA+TGG | - | chr5_3:12937572-12937591 | None:intergenic | 50.0% | |
| ATAGCTTAGGGGTCACTCAC+AGG | - | chr5_3:12937709-12937728 | None:intergenic | 50.0% | |
| ! | TGTCTTGATGCAGGGGCTTT+TGG | + | chr5_3:12938065-12938084 | Msa0799650:intron | 50.0% |
| !!! | ATGCAGGGGCTTTTGGAGTT+TGG | + | chr5_3:12938072-12938091 | Msa0799650:intron | 50.0% |
| TTGCGGAACTTCACAAGGAG+TGG | + | chr5_3:12938142-12938161 | Msa0799650:CDS | 50.0% | |
| GCCCATTCGCACGATAATGA+TGG | - | chr5_3:12938217-12938236 | None:intergenic | 50.0% | |
| ATCGAGAACGATAGCGCCCA+TGG | - | chr5_3:12932912-12932931 | None:intergenic | 55.0% | |
| ! | AAAGGACCGATTCCGAGACC+GGG | - | chr5_3:12932941-12932960 | None:intergenic | 55.0% |
| ! | GAAAGGACCGATTCCGAGAC+CGG | - | chr5_3:12932942-12932961 | None:intergenic | 55.0% |
| GGAATCGGTCCTTTCTCCCT+CGG | + | chr5_3:12932947-12932966 | Msa0799650:CDS | 55.0% | |
| !! | TTGGTGCTACAGAGCTCCAG+AGG | - | chr5_3:12933661-12933680 | None:intergenic | 55.0% |
| !! | ACGGCACTGACACATCGACA+CGG | - | chr5_3:12933755-12933774 | None:intergenic | 55.0% |
| CCGTTTCGATCCATGGTCTC+AGG | + | chr5_3:12933931-12933950 | Msa0799650:CDS | 55.0% | |
| AGGCTATTGGGTCAGCTGCA+TGG | - | chr5_3:12934454-12934473 | None:intergenic | 55.0% | |
| TGCAGCTGACCCAATAGCCT+TGG | + | chr5_3:12934454-12934473 | Msa0799650:intron | 55.0% | |
| GCAGCTGACCCAATAGCCTT+GGG | + | chr5_3:12934455-12934474 | Msa0799650:intron | 55.0% | |
| GTGTCACGCCCAAGGCTATT+GGG | - | chr5_3:12934466-12934485 | None:intergenic | 55.0% | |
| TGTGTCACGCCCAAGGCTAT+TGG | - | chr5_3:12934467-12934486 | None:intergenic | 55.0% | |
| CCCAAAACCTAAGCGGAACC+TGG | + | chr5_3:12934595-12934614 | Msa0799650:intron | 55.0% | |
| TGTTTGGGCCCACATACCCA+GGG | + | chr5_3:12935505-12935524 | Msa0799650:intron | 55.0% | |
| GTAACTGGCGTTGTCCCATC+TGG | - | chr5_3:12935818-12935837 | None:intergenic | 55.0% | |
| CACACCAACCTTCTTACCGG+AGG | - | chr5_3:12935867-12935886 | None:intergenic | 55.0% | |
| !! | CTCCGGTAAGAAGGTTGGTG+TGG | + | chr5_3:12935865-12935884 | Msa0799650:CDS | 55.0% |
| GCCCACACCAACCTTCTTAC+CGG | - | chr5_3:12935870-12935889 | None:intergenic | 55.0% | |
| !! | TCCTTTTGGTGCATCCCCAC+AGG | + | chr5_3:12936152-12936171 | Msa0799650:CDS | 55.0% |
| ACCTGTGGGGATGCACCAAA+AGG | - | chr5_3:12936156-12936175 | None:intergenic | 55.0% | |
| ACTGAACTAGGACGTCCCTG+CGG | + | chr5_3:12936327-12936346 | Msa0799650:CDS | 55.0% | |
| TCTCCGCAGATAGTTGTCCG+TGG | - | chr5_3:12936909-12936928 | None:intergenic | 55.0% | |
| TCCTCCAACAGCTGGAAAGG+GGG | - | chr5_3:12937267-12937286 | None:intergenic | 55.0% | |
| CGAGCTGCCATTCAGACACA+AGG | + | chr5_3:12937562-12937581 | Msa0799650:CDS | 55.0% | |
| AGGTTTGCGAAGCGTGGTTG+CGG | + | chr5_3:12938125-12938144 | Msa0799650:CDS | 55.0% | |
| CGTGGTTGCGGAACTTCACA+AGG | + | chr5_3:12938137-12938156 | Msa0799650:CDS | 55.0% | |
| GGAACTTCACAAGGAGTGGC+AGG | + | chr5_3:12938146-12938165 | Msa0799650:CDS | 55.0% | |
| CCATGGCTGTGCCTTCGCAA+CGG | - | chr5_3:12932895-12932914 | None:intergenic | 60.0% | |
| ! | CGTTGCGAAGGCACAGCCAT+GGG | + | chr5_3:12932893-12932912 | Msa0799650:CDS | 60.0% |
| CTCGATCTTCGTCCCGGTCT+CGG | + | chr5_3:12932926-12932945 | Msa0799650:CDS | 60.0% | |
| CTTCGTCCCGGTCTCGGAAT+CGG | + | chr5_3:12932932-12932951 | Msa0799650:CDS | 60.0% | |
| ACACGCGCGCGTACCTGAAT+AGG | - | chr5_3:12934012-12934031 | None:intergenic | 60.0% | |
| TATTCAGGTACGCGCGCGTG+TGG | + | chr5_3:12934011-12934030 | Msa0799650:intron | 60.0% | |
| CTGTTTGGGCCCACATACCC+AGG | + | chr5_3:12935504-12935523 | Msa0799650:intron | 60.0% | |
| ! | GACTGCTGTCATGATGGGGG+AGG | + | chr5_3:12935696-12935715 | Msa0799650:CDS | 60.0% |
| CTGCCTCTGATCTTCGGCCA+CGG | + | chr5_3:12936889-12936908 | Msa0799650:CDS | 60.0% | |
| TGTCCGTGGCCGAAGATCAG+AGG | - | chr5_3:12936895-12936914 | None:intergenic | 60.0% | |
| CGGCCACGGACAACTATCTG+CGG | + | chr5_3:12936903-12936922 | Msa0799650:CDS | 60.0% | |
| TCCCCCTTTCCAGCTGTTGG+AGG | + | chr5_3:12937263-12937282 | Msa0799650:intron | 60.0% | |
| GGTTTGGGTGGCGTGCGAGA+GGG | + | chr5_3:12932624-12932643 | Msa0799650:five_prime_UTR | 65.0% | |
| GTTTGGGTGGCGTGCGAGAG+GGG | + | chr5_3:12932625-12932644 | Msa0799650:five_prime_UTR | 65.0% | |
| TTTGGGTGGCGTGCGAGAGG+GGG | + | chr5_3:12932626-12932645 | Msa0799650:five_prime_UTR | 65.0% | |
| AGACCCAGACGCCGTTGCGA+AGG | + | chr5_3:12932881-12932900 | Msa0799650:CDS | 65.0% | |
| GTGCCTTCGCAACGGCGTCT+GGG | - | chr5_3:12932887-12932906 | None:intergenic | 65.0% | |
| TGTGCCTTCGCAACGGCGTC+TGG | - | chr5_3:12932888-12932907 | None:intergenic | 65.0% | |
| ! | CCGTTGCGAAGGCACAGCCA+TGG | + | chr5_3:12932892-12932911 | Msa0799650:CDS | 65.0% |
| AGGTACGCGCGCGTGTGGTT+GGG | + | chr5_3:12934016-12934035 | Msa0799650:intron | 65.0% | |
| GGGTTTGGGTGGCGTGCGAG+AGG | + | chr5_3:12932623-12932642 | Msa0799650:five_prime_UTR | 70.0% | |
| CAGGTACGCGCGCGTGTGGT+TGG | + | chr5_3:12934015-12934034 | Msa0799650:intron | 70.0% | |
| GGTACGCGCGCGTGTGGTTG+GGG | + | chr5_3:12934017-12934036 | Msa0799650:intron | 70.0% | |
| GTACGCGCGCGTGTGGTTGG+GGG | + | chr5_3:12934018-12934037 | Msa0799650:intron | 70.0% | |
| TACGCGCGCGTGTGGTTGGG+GGG | + | chr5_3:12934019-12934038 | Msa0799650:intron | 70.0% | |
| ACGCGCGCGTGTGGTTGGGG+GGG | + | chr5_3:12934020-12934039 | Msa0799650:intron | 75.0% | |
| ! | CGCGCGCGTGTGGTTGGGGG+GGG | + | chr5_3:12934021-12934040 | Msa0799650:intron | 80.0% |
| ! | GCGCGCGTGTGGTTGGGGGG+GGG | + | chr5_3:12934022-12934041 | Msa0799650:intron | 80.0% |
| ! | CGCGCGTGTGGTTGGGGGGG+GGG | + | chr5_3:12934023-12934042 | Msa0799650:intron | 80.0% |
| ! | GCGCGTGTGGTTGGGGGGGG+GGG | + | chr5_3:12934024-12934043 | Msa0799650:intron | 80.0% |
| ! | CGCGTGTGGTTGGGGGGGGG+GGG | + | chr5_3:12934025-12934044 | Msa0799650:intron | 80.0% |
| ! | GCGTGTGGTTGGGGGGGGGG+GGG | + | chr5_3:12934026-12934045 | Msa0799650:intron | 80.0% |
| ! | CGTGTGGTTGGGGGGGGGGG+GGG | + | chr5_3:12934027-12934046 | Msa0799650:intron | 80.0% |
| ! | GTGTGGTTGGGGGGGGGGGG+GGG | + | chr5_3:12934028-12934047 | Msa0799650:intron | 80.0% |
| ! | TGTGGTTGGGGGGGGGGGGG+GGG | + | chr5_3:12934029-12934048 | Msa0799650:intron | 80.0% |
| !! | GGGGGGGGGGGGGTATGGCT+TGG | + | chr5_3:12934042-12934061 | Msa0799650:intron | 80.0% |
| ! | GTGGTTGGGGGGGGGGGGGG+GGG | + | chr5_3:12934030-12934049 | Msa0799650:intron | 85.0% |
| ! | TGGTTGGGGGGGGGGGGGGG+GGG | + | chr5_3:12934031-12934050 | Msa0799650:intron | 85.0% |
| ! | GGTTGGGGGGGGGGGGGGGG+GGG | + | chr5_3:12934032-12934051 | Msa0799650:intron | 90.0% |
| ! | GGGGGGGGGGGGGGGGGGTA+TGG | + | chr5_3:12934037-12934056 | Msa0799650:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 12932601 | 12938418 | 12932601 | ID=Msa0799650;Name=Msa0799650 |
| chr5_3 | mRNA | 12932601 | 12938418 | 12932601 | ID=Msa0799650-mRNA-1;Parent=Msa0799650;Name=Msa0799650-mRNA-1;_AED=0.19;_eAED=0.19;_QI=271|0.83|0.92|1|0.75|0.84|13|229|381 |
| chr5_3 | exon | 12932601 | 12932968 | 12932601 | ID=Msa0799650-mRNA-1:exon:5325;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12933373 | 12933455 | 12933373 | ID=Msa0799650-mRNA-1:exon:5326;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12933878 | 12933952 | 12933878 | ID=Msa0799650-mRNA-1:exon:5327;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12935657 | 12935717 | 12935657 | ID=Msa0799650-mRNA-1:exon:5328;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12935795 | 12935961 | 12935795 | ID=Msa0799650-mRNA-1:exon:5329;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12936111 | 12936173 | 12936111 | ID=Msa0799650-mRNA-1:exon:5330;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12936318 | 12936365 | 12936318 | ID=Msa0799650-mRNA-1:exon:5331;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12936867 | 12936980 | 12936867 | ID=Msa0799650-mRNA-1:exon:5332;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12937070 | 12937169 | 12937070 | ID=Msa0799650-mRNA-1:exon:5333;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12937276 | 12937355 | 12937276 | ID=Msa0799650-mRNA-1:exon:5334;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12937541 | 12937645 | 12937541 | ID=Msa0799650-mRNA-1:exon:5335;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12937748 | 12937788 | 12937748 | ID=Msa0799650-mRNA-1:exon:5336;Parent=Msa0799650-mRNA-1 |
| chr5_3 | exon | 12938078 | 12938418 | 12938078 | ID=Msa0799650-mRNA-1:exon:5337;Parent=Msa0799650-mRNA-1 |
| chr5_3 | five_prime_UTR | 12932601 | 12932871 | 12932601 | ID=Msa0799650-mRNA-1:five_prime_utr;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12932872 | 12932968 | 12932872 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12933373 | 12933455 | 12933373 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12933878 | 12933952 | 12933878 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12935657 | 12935717 | 12935657 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12935795 | 12935961 | 12935795 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12936111 | 12936173 | 12936111 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12936318 | 12936365 | 12936318 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12936867 | 12936980 | 12936867 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12937070 | 12937169 | 12937070 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12937276 | 12937355 | 12937276 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12937541 | 12937645 | 12937541 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12937748 | 12937788 | 12937748 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | CDS | 12938078 | 12938189 | 12938078 | ID=Msa0799650-mRNA-1:cds;Parent=Msa0799650-mRNA-1 |
| chr5_3 | three_prime_UTR | 12938190 | 12938418 | 12938190 | ID=Msa0799650-mRNA-1:three_prime_utr;Parent=Msa0799650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
