AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1007610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007610 MtrunA17_Chr7g0217961 97.738 221 5 0 1 221 1 221 1.25e-159 440
Msa1007610 MtrunA17_Chr6g0453631 81.900 221 40 0 1 221 1 221 1.64e-133 374
Msa1007610 MtrunA17_Chr3g0091631 67.727 220 71 0 1 220 64 283 5.55e-108 311
Msa1007610 MtrunA17_Chr5g0418041 61.538 221 84 1 1 220 1 221 6.13e-98 284
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007610 AT3G29100.3 71.041 221 64 0 1 221 1 221 9.78e-117 332
Msa1007610 AT5G39510.1 66.968 221 73 0 1 221 1 221 7.99e-106 304
Msa1007610 AT1G26670.1 64.253 221 78 1 1 220 1 221 1.18e-100 291
Msa1007610 AT3G29100.1 70.588 170 50 0 52 221 26 195 2.40e-86 254
Msa1007610 AT3G29100.2 71.257 167 48 0 55 221 1 167 2.21e-85 250
Msa1007610 AT3G29100.4 71.257 167 48 0 55 221 1 167 2.21e-85 250
Msa1007610 AT3G29100.5 71.257 167 48 0 55 221 1 167 2.21e-85 250
Msa1007610 AT5G39630.1 42.986 221 112 3 1 221 1 207 5.51e-48 157

Find 82 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATTTGTAGATTCGGAAAA+TGG 0.148334 7_1:-7227821 Msa1007610:intron
TCCTTTGGGAATATTGTAAT+TGG 0.172421 7_1:-7225043 Msa1007610:three_prime_UTR
CCTAATCGTTTCAACGAATT+AGG 0.206242 7_1:-7231224 Msa1007610:five_prime_UTR
AGCAGCTGCAGTACAAATTT+TGG 0.223793 7_1:+7230977 None:intergenic
GCCTTGCATCTTGGCGATTT+AGG 0.243127 7_1:+7225370 None:intergenic
AAGTTTGCAGCCAAACATTA+AGG 0.247833 7_1:-7227785 Msa1007610:CDS
TTCTGTCGAACATGTCTAAA+AGG 0.278857 7_1:-7225499 Msa1007610:CDS
ACTGCAGCTGCTGCTCTTAA+TGG 0.279246 7_1:-7230966 Msa1007610:CDS
GCAAAATATTTCAGATATAA+AGG 0.306073 7_1:-7227950 Msa1007610:CDS
CAAATCTAGTGACAGAATTA+AGG 0.325551 7_1:-7226034 Msa1007610:CDS
TGTTTCGTTGAAGGATATTC+TGG 0.339103 7_1:+7231412 None:intergenic
TATTCTCTTATGCAGCTTCA+TGG 0.340552 7_1:-7225554 Msa1007610:intron
TTTAATTATGTGTCTTGTGC+TGG 0.345893 7_1:-7225241 Msa1007610:three_prime_UTR
CGGGATATGTTGTTGGAATC+AGG 0.359202 7_1:-7227664 Msa1007610:CDS
GGAAAACACCGCTCGAGTTT+CGG 0.366811 7_1:-7225022 Msa1007610:three_prime_UTR
CCTAATTCGTTGAAACGATT+AGG 0.370095 7_1:+7231224 None:intergenic
TGTTGGAAACGGAAGAGCTT+GGG 0.371438 7_1:-7225996 Msa1007610:CDS
GAACTTAAGAAACTTGTATC+TGG 0.383535 7_1:-7227706 Msa1007610:CDS
TAGCACCATTGTTGGAGTCC+TGG 0.397903 7_1:-7225453 Msa1007610:CDS
TGTACTTCTTGCTAAGTTGC+GGG 0.406118 7_1:-7227761 Msa1007610:CDS
CTTATAAAAGCCTTGCATCT+TGG 0.411208 7_1:+7225361 None:intergenic
TAGTAACTTAACCTATCCTT+TGG 0.413810 7_1:-7225058 Msa1007610:three_prime_UTR
TGTATTATTAGCACCATTGT+TGG 0.413937 7_1:-7225461 Msa1007610:CDS
ACGAATTAGGCCTGGTTTCG+TGG 0.417483 7_1:-7231211 Msa1007610:five_prime_UTR
TTGATAGAGGTGTTGGTTGG+AGG 0.417981 7_1:+7231250 None:intergenic
AGAAGTACACCCTTAATGTT+TGG 0.429162 7_1:+7227775 None:intergenic
CTCTGCCCGGGATATGTTGT+TGG 0.438296 7_1:-7227671 Msa1007610:CDS
AGTTTGCAGCCAAACATTAA+GGG 0.439151 7_1:-7227784 Msa1007610:CDS
AACGATTAGGAATTTGATAG+AGG 0.448744 7_1:+7231237 None:intergenic
AATCGATGAGGCAGAAGCTT+TGG 0.451935 7_1:-7227923 Msa1007610:intron
ATGTTTATGTTGTGCAATGC+TGG 0.454115 7_1:-7225289 Msa1007610:three_prime_UTR
GCTGAGAATGCAAATCTTGA+AGG 0.459483 7_1:+7225965 None:intergenic
AGTAACTTAACCTATCCTTT+GGG 0.462133 7_1:-7225057 Msa1007610:three_prime_UTR
ACATGTCTAAAAGGATGAAC+AGG 0.462889 7_1:-7225490 Msa1007610:CDS
AGAGGTGTTGGTTGGAGGAT+CGG 0.466471 7_1:+7231255 None:intergenic
TAGGAATTTGATAGAGGTGT+TGG 0.475140 7_1:+7231243 None:intergenic
TTGGCGATTTAGGAGGTGTC+TGG 0.480923 7_1:+7225380 None:intergenic
AATATTTCAGATATAAAGGC+TGG 0.486099 7_1:-7227946 Msa1007610:CDS
AATTTGATAGAGGTGTTGGT+TGG 0.495640 7_1:+7231247 None:intergenic
GTGACAGAATTAAGGACAGC+AGG 0.496887 7_1:-7226026 Msa1007610:CDS
GTAACATGAACCCCTCTGCC+CGG 0.498653 7_1:-7227684 Msa1007610:CDS
GGCATCCACGTGCGTATTGA+CGG 0.499536 7_1:-7231455 Msa1007610:five_prime_UTR
GTAAAATTAGTCTAATCCAT+TGG 0.503673 7_1:-7225138 Msa1007610:three_prime_UTR
TGGAGGATCGGAGATGTGGC+CGG 0.506715 7_1:+7231267 None:intergenic
TCCAATTACAATATTCCCAA+AGG 0.509570 7_1:+7225042 None:intergenic
CTGATTCCAACAACATATCC+CGG 0.518713 7_1:+7227665 None:intergenic
GTGTACTTCTTGCTAAGTTG+CGG 0.523629 7_1:-7227762 Msa1007610:CDS
TCCTAAATCGCCAAGATGCA+AGG 0.529990 7_1:-7225371 Msa1007610:three_prime_UTR
TCGTTTCAACGAATTAGGCC+TGG 0.530133 7_1:-7231219 Msa1007610:five_prime_UTR
TTACAATATTCCCAAAGGAT+AGG 0.530254 7_1:+7225047 None:intergenic
GGACAGCAGGAGAACAATGT+TGG 0.535680 7_1:-7226013 Msa1007610:CDS
CAGGAGAACAATGTTGGAAA+CGG 0.537387 7_1:-7226007 Msa1007610:CDS
ACGATGAGTACCGTGTTTGA+AGG 0.542645 7_1:-7231038 Msa1007610:CDS
CCGGCGATCTCAACAACCTC+CGG 0.547185 7_1:-7231286 Msa1007610:five_prime_UTR
TATAATACTAAAATGTAATG+TGG 0.548251 7_1:-7225168 Msa1007610:three_prime_UTR
CAACAACATATCCCGGGCAG+AGG 0.549166 7_1:+7227672 None:intergenic
TAACATGAACCCCTCTGCCC+GGG 0.559609 7_1:-7227683 Msa1007610:CDS
ATGTTGGAAACGGAAGAGCT+TGG 0.571336 7_1:-7225997 Msa1007610:CDS
TTGCATCTTGGCGATTTAGG+AGG 0.575745 7_1:+7225373 None:intergenic
AACAACATATCCCGGGCAGA+GGG 0.578673 7_1:+7227673 None:intergenic
CCGGAGGTTGTTGAGATCGC+CGG 0.580642 7_1:+7231286 None:intergenic
AAGAACCAGGACTCCAACAA+TGG 0.584898 7_1:+7225448 None:intergenic
TCTTATGCAGCTTCATGGAG+TGG 0.586053 7_1:-7225549 Msa1007610:intron
GTTGGAAACGGAAGAGCTTG+GGG 0.586866 7_1:-7225995 Msa1007610:CDS
TGTTCTCCGCTTAAAATCTC+CGG 0.587174 7_1:-7231305 Msa1007610:five_prime_UTR
GATTCGGAAAATGGATCTTG+AGG 0.594367 7_1:-7227812 Msa1007610:CDS
AGCGGAGAACAGCGACGGAA+CGG 0.602932 7_1:+7231317 None:intergenic
AGGCATGGCAGATGCTATGA+CGG 0.603594 7_1:-7227644 Msa1007610:intron
TGATTCCAACAACATATCCC+GGG 0.605197 7_1:+7227666 None:intergenic
TATGTTGTTGGAATCAGGCA+TGG 0.631211 7_1:-7227659 Msa1007610:CDS
TGCTACCGTCAATACGCACG+TGG 0.631475 7_1:+7231450 None:intergenic
ATGATATTGATTGATTACAA+CGG 0.649747 7_1:+7231378 None:intergenic
TGGTTGGAGGATCGGAGATG+TGG 0.651028 7_1:+7231263 None:intergenic
GCAGCTGCTGCTCTTAATGG+AGG 0.656845 7_1:-7230963 Msa1007610:intron
CGGTGATTTGATCGAAACGA+CGG 0.666806 7_1:+7231337 None:intergenic
TCAAGATAATAACAAGAACC+AGG 0.668867 7_1:+7225435 None:intergenic
AGGATCGGAGATGTGGCCGG+AGG 0.683639 7_1:+7231270 None:intergenic
ACGTTCATATCCTTCAAACA+CGG 0.683882 7_1:+7231028 None:intergenic
GTCAACTACCGAAACTCGAG+CGG 0.684393 7_1:+7225014 None:intergenic
TATAAAGGCTGGAATCGATG+AGG 0.704491 7_1:-7227935 Msa1007610:CDS
ACAACATATCCCGGGCAGAG+GGG 0.706468 7_1:+7227674 None:intergenic
TGTGGAACGAATTAAACACG+TGG 0.727449 7_1:-7231476 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr7_1:7229029-7229048 Msa1007610:intron 0.0%
!! TATATATATATATATATATA+GGG - chr7_1:7229028-7229047 Msa1007610:intron 0.0%
!! TAATAATAATAATAATAATA+AGG - chr7_1:7229365-7229384 Msa1007610:intron 0.0%
!! AATAATAATAATAATAATAA+GGG - chr7_1:7229366-7229385 Msa1007610:intron 0.0%
!! AAATTAAGTGATATTAATTT+AGG + chr7_1:7225661-7225680 None:intergenic 10.0%
!! TAATTTATATACATATTTCT+TGG - chr7_1:7226483-7226502 Msa1007610:intron 10.0%
!! AATTTATATACATATTTCTT+GGG - chr7_1:7226484-7226503 Msa1007610:intron 10.0%
!! TAAAAATAAAAATCAATTAG+AGG + chr7_1:7226755-7226774 None:intergenic 10.0%
!! TTGAAAAAATATATGTAAAA+AGG + chr7_1:7227338-7227357 None:intergenic 10.0%
!!! AAATGCTTTTTTTTTTAATA+GGG + chr7_1:7228026-7228045 None:intergenic 10.0%
!!! AAAATGCTTTTTTTTTTAAT+AGG + chr7_1:7228027-7228046 None:intergenic 10.0%
!!! ATTAAAAAAAAAAGCATTTT+TGG - chr7_1:7228027-7228046 Msa1007610:intron 10.0%
!!! TGAAATTATATTTAGTTTTA+GGG + chr7_1:7228358-7228377 None:intergenic 10.0%
!!! TTGAAATTATATTTAGTTTT+AGG + chr7_1:7228359-7228378 None:intergenic 10.0%
!! TATTTAACCTTAAAATAATT+GGG + chr7_1:7229541-7229560 None:intergenic 10.0%
!! ATATTTAACCTTAAAATAAT+TGG + chr7_1:7229542-7229561 None:intergenic 10.0%
!! AAAACATTTATTGAAATATA+AGG + chr7_1:7229605-7229624 None:intergenic 10.0%
!!! ATATTAAAGTGATGTTATTT+AGG + chr7_1:7225906-7225925 None:intergenic 15.0%
!!! GTATAAAAATTAAGTTTGTT+TGG - chr7_1:7226239-7226258 Msa1007610:intron 15.0%
!!! ATGTGTTTATTTTCTATATA+AGG - chr7_1:7227003-7227022 Msa1007610:intron 15.0%
!!! TTCTTTTTTTAACAAACAAA+AGG + chr7_1:7227845-7227864 None:intergenic 15.0%
!!! AATGCTTTTTTTTTTAATAG+GGG + chr7_1:7228025-7228044 None:intergenic 15.0%
!!! TTTTGCCATTTTTTTTAATA+GGG - chr7_1:7228200-7228219 Msa1007610:intron 15.0%
!! AAAACATTTAATGAAATGTA+GGG + chr7_1:7229795-7229814 None:intergenic 15.0%
!! AAAAACATTTAATGAAATGT+AGG + chr7_1:7229794-7229813 None:intergenic 15.0%
!!! TTTAAGGTTAAATATGTTTT+TGG - chr7_1:7229547-7229566 Msa1007610:intron 15.0%
!! TTAAAATCCCTAAAATAATA+AGG - chr7_1:7229624-7229643 Msa1007610:intron 15.0%
!! AAAAACATTTAATGAAATGT+AGG - chr7_1:7229794-7229813 Msa1007610:intron 15.0%
!! AAAACATTTAATGAAATGTA+GGG - chr7_1:7229795-7229814 Msa1007610:intron 15.0%
!! GAAATTCTAATTTCTAATAA+TGG - chr7_1:7230640-7230659 Msa1007610:intron 15.0%
!!! AATTGATTAAGTTTTATCTT+CGG - chr7_1:7230723-7230742 Msa1007610:intron 15.0%
!! TATAATACTAAAATGTAATG+TGG - chr7_1:7231302-7231321 Msa1007610:five_prime_UTR 15.0%
!!! ATGATATTGATTGATTACAA+CGG + chr7_1:7225095-7225114 None:intergenic 20.0%
!!! TTGTTTGAGTTTAATTTGAT+TGG - chr7_1:7226205-7226224 Msa1007610:intron 20.0%
!! CAAAATAAATTCTACAACTT+TGG + chr7_1:7226294-7226313 None:intergenic 20.0%
!! AATTGATTATGTGTATGTTT+GGG - chr7_1:7226320-7226339 Msa1007610:intron 20.0%
!! TGAATTAAACACGAAATTTA+AGG + chr7_1:7226779-7226798 None:intergenic 20.0%
!!! TTTGATATTTCTGATCTAAT+AGG - chr7_1:7227568-7227587 Msa1007610:intron 20.0%
!!! TTGATATTTCTGATCTAATA+GGG - chr7_1:7227569-7227588 Msa1007610:intron 20.0%
!!! ATGCTTTTTTTTTTAATAGG+GGG + chr7_1:7228024-7228043 None:intergenic 20.0%
!! TTTAGAAAAAGTTGCAATTA+TGG + chr7_1:7228105-7228124 None:intergenic 20.0%
!!! CTTTTGCCATTTTTTTTAAT+AGG - chr7_1:7228199-7228218 Msa1007610:intron 20.0%
!!! TTTGCCATTTTTTTTAATAG+GGG - chr7_1:7228201-7228220 Msa1007610:intron 20.0%
!! GCAAAATATTTCAGATATAA+AGG - chr7_1:7228520-7228539 Msa1007610:intron 20.0%
!! AAGTTAATAAATACACCTTA+AGG + chr7_1:7229288-7229307 None:intergenic 20.0%
!!! GAATAGTCCTTATTATTTTA+GGG + chr7_1:7229634-7229653 None:intergenic 20.0%
!!! AGAATAGTCCTTATTATTTT+AGG + chr7_1:7229635-7229654 None:intergenic 20.0%
!! ACATATTTAACCCAAAATAT+TGG - chr7_1:7229685-7229704 Msa1007610:intron 20.0%
!! CATATTTAACCCAAAATATT+GGG - chr7_1:7229686-7229705 Msa1007610:intron 20.0%
!!! CTATATAATTTGTGAAGATT+TGG - chr7_1:7229920-7229939 Msa1007610:intron 20.0%
!!! ATTTGGTTGAATTTTTACTA+TGG - chr7_1:7229937-7229956 Msa1007610:intron 20.0%
!!! CAGAAAGTTTATATTTCTTT+TGG + chr7_1:7229985-7230004 None:intergenic 20.0%
!! AGAAATATAAACTTTCTGTA+CGG - chr7_1:7229987-7230006 Msa1007610:intron 20.0%
!! TTAAAACATCAGGAATTAAA+TGG + chr7_1:7230263-7230282 None:intergenic 20.0%
!!! CTCAATTAATTTAAAACATC+AGG + chr7_1:7230273-7230292 None:intergenic 20.0%
!!! TTCTGAATATTCATTTTTCT+TGG - chr7_1:7230309-7230328 Msa1007610:intron 20.0%
!!! TCTGAATATTCATTTTTCTT+GGG - chr7_1:7230310-7230329 Msa1007610:intron 20.0%
!!! ATTTCTCTTTTTTTGTTTTC+TGG - chr7_1:7231133-7231152 Msa1007610:intron 20.0%
!!! TCATCTTTTTCTGAATAATA+AGG + chr7_1:7231160-7231179 None:intergenic 20.0%
!!! TATAGTTTTTGTTTCGTTGA+AGG + chr7_1:7225070-7225089 None:intergenic 25.0%
!! TTTTCTGAATTTCCTGAATT+CGG - chr7_1:7225319-7225338 Msa1007610:three_prime_UTR 25.0%
! TAATAATATACACCGAATTC+AGG + chr7_1:7225334-7225353 None:intergenic 25.0%
!!! GAATTCGGTGTATATTATTA+TGG - chr7_1:7225334-7225353 Msa1007610:three_prime_UTR 25.0%
! CTAGTAAGTGATATGATTTA+GGG + chr7_1:7225629-7225648 None:intergenic 25.0%
! TCTAGTAAGTGATATGATTT+AGG + chr7_1:7225630-7225649 None:intergenic 25.0%
!!! CATCTCTGAAATTTATGAAT+AGG + chr7_1:7225997-7226016 None:intergenic 25.0%
!!! GGTGATTTACTATATTTTAG+TGG - chr7_1:7226052-7226071 Msa1007610:CDS 25.0%
!!! ACTATATTTTAGTGGTTACT+TGG - chr7_1:7226060-7226079 Msa1007610:CDS 25.0%
!!! TTTGAGTTTAATTTGATTGG+TGG - chr7_1:7226208-7226227 Msa1007610:intron 25.0%
!! AGTTTGTTTGGTTTCAATTT+AGG - chr7_1:7226251-7226270 Msa1007610:intron 25.0%
! GAATTGATTATGTGTATGTT+TGG - chr7_1:7226319-7226338 Msa1007610:intron 25.0%
! AAGTTAAACTTTATTCAGCT+GGG + chr7_1:7226651-7226670 None:intergenic 25.0%
! TAAGTTAAACTTTATTCAGC+TGG + chr7_1:7226652-7226671 None:intergenic 25.0%
!! ATCCATTTGAAGCTAAAATT+TGG - chr7_1:7226721-7226740 Msa1007610:intron 25.0%
!!! GTGTTTAATTCACTTTTACA+TGG - chr7_1:7226787-7226806 Msa1007610:intron 25.0%
! TTAACATTATGTCTAGACAT+GGG - chr7_1:7226930-7226949 Msa1007610:intron 25.0%
! AAGTATTAAATTGACATGAG+AGG - chr7_1:7227459-7227478 Msa1007610:intron 25.0%
! CATCAAACATAAAGATAAAG+AGG + chr7_1:7227627-7227646 None:intergenic 25.0%
! AAGTTAATCCAAAAAAAGGA+GGG + chr7_1:7227651-7227670 None:intergenic 25.0%
!! AACAAAAGGCACATAAATAA+GGG + chr7_1:7227831-7227850 None:intergenic 25.0%
!! AAACAAAAGGCACATAAATA+AGG + chr7_1:7227832-7227851 None:intergenic 25.0%
!! GTTTCAAAATGTTGCAATTT+TGG - chr7_1:7227998-7228017 Msa1007610:intron 25.0%
!!! TGCAACTTTTTCTAAAGATA+AGG - chr7_1:7228109-7228128 Msa1007610:intron 25.0%
!!! GCAACTTTTTCTAAAGATAA+GGG - chr7_1:7228110-7228129 Msa1007610:intron 25.0%
!!! CAACTTTTTCTAAAGATAAG+GGG - chr7_1:7228111-7228130 Msa1007610:intron 25.0%
!!! TTGCCATTTTTTTTAATAGG+GGG - chr7_1:7228202-7228221 Msa1007610:intron 25.0%
!! GTTTCAAAATGTTGCAATTT+TGG + chr7_1:7227998-7228017 None:intergenic 25.0%
!!! TTGCAACATTTTGAAACTTA+AGG - chr7_1:7228231-7228250 Msa1007610:intron 25.0%
!!! TGCAACATTTTGAAACTTAA+GGG - chr7_1:7228232-7228251 Msa1007610:intron 25.0%
! AAATATACCCTATTCTCATA+AGG + chr7_1:7228276-7228295 None:intergenic 25.0%
!!! AATAGGGTATATTTTGCTAT+TGG - chr7_1:7228282-7228301 Msa1007610:intron 25.0%
! CTTCTTGATAAACATCTTAA+TGG + chr7_1:7228396-7228415 None:intergenic 25.0%
! AATATTTCAGATATAAAGGC+TGG - chr7_1:7228524-7228543 Msa1007610:intron 25.0%
! GCTTTCAAACAAAATGAAAA+AGG + chr7_1:7228584-7228603 None:intergenic 25.0%
! TCAAAATCACGCAAAATATA+GGG + chr7_1:7229574-7229593 None:intergenic 25.0%
! TTCAAAATCACGCAAAATAT+AGG + chr7_1:7229575-7229594 None:intergenic 25.0%
!!! TTTTGGGTTAAATATGTTTG+TGG + chr7_1:7229682-7229701 None:intergenic 25.0%
! GAAATATAAACTTTCTGTAC+GGG - chr7_1:7229988-7230007 Msa1007610:intron 25.0%
!!! ACATTTTAGAACAGTAGTTA+TGG - chr7_1:7230044-7230063 Msa1007610:intron 25.0%
! TAAGCAATAGGAATCAAATT+TGG + chr7_1:7230345-7230364 None:intergenic 25.0%
!!! TACATTGCTTTTCTTCTTTA+CGG - chr7_1:7230760-7230779 Msa1007610:intron 25.0%
!! GTAAAATTAGTCTAATCCAT+TGG - chr7_1:7231332-7231351 Msa1007610:five_prime_UTR 25.0%
!!! AGAACAACATTTTAATCCAA+TGG + chr7_1:7231351-7231370 None:intergenic 25.0%
AACGATTAGGAATTTGATAG+AGG + chr7_1:7225236-7225255 None:intergenic 30.0%
! ATAGCGATTTTCTTTTGTGT+TGG - chr7_1:7225407-7225426 Msa1007610:exon 30.0%
TTCAGTGTTATCATATGTGT+CGG - chr7_1:7225771-7225790 Msa1007610:intron 30.0%
!! CTAATTTGTGTTAGCTTGTA+AGG + chr7_1:7225849-7225868 None:intergenic 30.0%
GCTAGTTAGCAATATAATTC+AGG + chr7_1:7225874-7225893 None:intergenic 30.0%
TTCCCGACATAATTCAAAAT+CGG - chr7_1:7225961-7225980 Msa1007610:CDS 30.0%
! AGTCTGACCCTTATAATTTT+AGG - chr7_1:7226021-7226040 Msa1007610:CDS 30.0%
! GTCTGACCCTTATAATTTTA+GGG - chr7_1:7226022-7226041 Msa1007610:CDS 30.0%
! TCTGACCCTTATAATTTTAG+GGG - chr7_1:7226023-7226042 Msa1007610:CDS 30.0%
ATTCGCCCCTAAAATTATAA+GGG + chr7_1:7226031-7226050 None:intergenic 30.0%
AATTCGCCCCTAAAATTATA+AGG + chr7_1:7226032-7226051 None:intergenic 30.0%
!! TTATAATTTTAGGGGCGAAT+TGG - chr7_1:7226031-7226050 Msa1007610:CDS 30.0%
! ATTGCATTGCATGTTTGTTT+TGG - chr7_1:7226151-7226170 Msa1007610:intron 30.0%
! TTGTTTGGTTTCAATTTAGG+AGG - chr7_1:7226254-7226273 Msa1007610:intron 30.0%
AATATAATTAGGATGCGAAG+TGG + chr7_1:7226358-7226377 None:intergenic 30.0%
CGCATTGAGACAATATAATT+AGG + chr7_1:7226369-7226388 None:intergenic 30.0%
AAATTTGGGAAGCTACAATT+TGG - chr7_1:7226400-7226419 Msa1007610:intron 30.0%
TAAAAGGACTACATCAAAAC+TGG + chr7_1:7226465-7226484 None:intergenic 30.0%
!!! TTTTAGCTTCAAATGGATTG+TGG + chr7_1:7226719-7226738 None:intergenic 30.0%
!!! CTCCAAATTTTAGCTTCAAA+TGG + chr7_1:7226726-7226745 None:intergenic 30.0%
AGTTGAATGTAAAGCGATTT+AGG + chr7_1:7226824-7226843 None:intergenic 30.0%
GTTAACATTATGTCTAGACA+TGG - chr7_1:7226929-7226948 Msa1007610:intron 30.0%
ATCAAGGGAATACTCATTAA+TGG + chr7_1:7227079-7227098 None:intergenic 30.0%
AATTTGAGGAATGCAATCAA+GGG + chr7_1:7227094-7227113 None:intergenic 30.0%
AAATTTGAGGAATGCAATCA+AGG + chr7_1:7227095-7227114 None:intergenic 30.0%
TTGATTGCATTCCTCAAATT+TGG - chr7_1:7227094-7227113 Msa1007610:intron 30.0%
! ACAAAGCATTACCAAATTTG+AGG + chr7_1:7227108-7227127 None:intergenic 30.0%
TCAACACAATTTCCAAAGAA+AGG + chr7_1:7227179-7227198 None:intergenic 30.0%
TCTGACGGAAATTTCTTAAT+AGG + chr7_1:7227211-7227230 None:intergenic 30.0%
! ATGTCATAGAGATTTTCTGA+CGG + chr7_1:7227226-7227245 None:intergenic 30.0%
TCAGAAAATCTCTATGACAT+TGG - chr7_1:7227226-7227245 Msa1007610:intron 30.0%
AGCAACTCAATAACCATTAA+GGG + chr7_1:7227516-7227535 None:intergenic 30.0%
AGTTAATCCAAAAAAAGGAG+GGG + chr7_1:7227650-7227669 None:intergenic 30.0%
GAAGTTAATCCAAAAAAAGG+AGG + chr7_1:7227652-7227671 None:intergenic 30.0%
GGAGAAGTTAATCCAAAAAA+AGG + chr7_1:7227655-7227674 None:intergenic 30.0%
CTAAAGCGAATTATTCACTT+TGG + chr7_1:7227676-7227695 None:intergenic 30.0%
AAGTGAATAATTCGCTTTAG+AGG - chr7_1:7227676-7227695 Msa1007610:CDS 30.0%
GTGAACAATTCATCTTAGAA+GGG + chr7_1:7227769-7227788 None:intergenic 30.0%
! ACAAAAGGCACATAAATAAG+GGG + chr7_1:7227830-7227849 None:intergenic 30.0%
! GTGCCTTTTGTTAGTTAATT+AGG - chr7_1:7227877-7227896 Msa1007610:intron 30.0%
CCTTCTCATAAAATGACTAT+TGG + chr7_1:7227953-7227972 None:intergenic 30.0%
!! CCAATAGTCATTTTATGAGA+AGG - chr7_1:7227950-7227969 Msa1007610:CDS 30.0%
!!! GCAACATTTTGAAACTTAGA+GGG + chr7_1:7227993-7228012 None:intergenic 30.0%
!!! TGCAACATTTTGAAACTTAG+AGG + chr7_1:7227994-7228013 None:intergenic 30.0%
CATATTTCCCTTATGTTAGA+GGG - chr7_1:7228142-7228161 Msa1007610:intron 30.0%
AAGACATATTTCCCTAAACA+CGG - chr7_1:7228169-7228188 Msa1007610:intron 30.0%
!!! GCAACATTTTGAAACTTAAG+GGG - chr7_1:7228233-7228252 Msa1007610:intron 30.0%
!! AGTTTAGCCTTATGAGAATA+GGG - chr7_1:7228266-7228285 Msa1007610:intron 30.0%
AAGATGTTTATCAAGAAGAG+AGG - chr7_1:7228398-7228417 Msa1007610:intron 30.0%
TCCTTCTTTCTTCTGTATTA+TGG - chr7_1:7228605-7228624 Msa1007610:intron 30.0%
CCTTCTTTCTTCTGTATTAT+GGG - chr7_1:7228606-7228625 Msa1007610:intron 30.0%
!! TGCTTATCGATTTGTAGATT+CGG - chr7_1:7228642-7228661 Msa1007610:intron 30.0%
GAACTTAAGAAACTTGTATC+TGG - chr7_1:7228764-7228783 Msa1007610:intron 30.0%
!! ACACTCTTTGATGATGTTAA+AGG - chr7_1:7228868-7228887 Msa1007610:intron 30.0%
TTCACAGAATATAAAGGAGA+TGG + chr7_1:7228941-7228960 None:intergenic 30.0%
CATGGTTTCACAGAATATAA+AGG + chr7_1:7228947-7228966 None:intergenic 30.0%
TATATTCTGTGAAACCATGA+TGG - chr7_1:7228948-7228967 Msa1007610:intron 30.0%
GCAAGTGAATAACTAAAAAG+TGG + chr7_1:7229156-7229175 None:intergenic 30.0%
! TACTCCTTCTAAAAAGTAAG+TGG - chr7_1:7229181-7229200 Msa1007610:intron 30.0%
! ACTCCTTCTAAAAAGTAAGT+GGG - chr7_1:7229182-7229201 Msa1007610:intron 30.0%
ACCTTCTAACAAAAACAAGT+GGG + chr7_1:7229247-7229266 None:intergenic 30.0%
TTATAGCAACATACACCTTA+AGG - chr7_1:7229270-7229289 Msa1007610:intron 30.0%
TGTAGGGACTATTATTCAAA+GGG + chr7_1:7229415-7229434 None:intergenic 30.0%
ATGTAGGGACTATTATTCAA+AGG + chr7_1:7229416-7229435 None:intergenic 30.0%
!!! AACGACTAATTTTGATAACG+GGG + chr7_1:7229473-7229492 None:intergenic 30.0%
!! CAACGACTAATTTTGATAAC+GGG + chr7_1:7229474-7229493 None:intergenic 30.0%
!! GCAACGACTAATTTTGATAA+CGG + chr7_1:7229475-7229494 None:intergenic 30.0%
! AAATGCCATTTGCAACATTA+GGG + chr7_1:7230237-7230256 None:intergenic 30.0%
! AATAGGAATCAAATTTGGTG+GGG + chr7_1:7230340-7230359 None:intergenic 30.0%
CAATAGGAATCAAATTTGGT+GGG + chr7_1:7230341-7230360 None:intergenic 30.0%
CAAATCTAGTGACAGAATTA+AGG - chr7_1:7230436-7230455 Msa1007610:intron 30.0%
GTTTCTTGGACTTATATCAT+AGG - chr7_1:7230680-7230699 Msa1007610:intron 30.0%
! ATGAAAGTGTAACTCTGTAA+TGG - chr7_1:7230846-7230865 Msa1007610:intron 30.0%
TGTATTATTAGCACCATTGT+TGG - chr7_1:7231009-7231028 Msa1007610:CDS 30.0%
TCAAGATAATAACAAGAACC+AGG + chr7_1:7231038-7231057 None:intergenic 30.0%
TTTAATTATGTGTCTTGTGC+TGG - chr7_1:7231229-7231248 Msa1007610:five_prime_UTR 30.0%
TAGTAACTTAACCTATCCTT+TGG - chr7_1:7231412-7231431 Msa1007610:five_prime_UTR 30.0%
AGTAACTTAACCTATCCTTT+GGG - chr7_1:7231413-7231432 Msa1007610:five_prime_UTR 30.0%
TTACAATATTCCCAAAGGAT+AGG + chr7_1:7231426-7231445 None:intergenic 30.0%
! TCCTTTGGGAATATTGTAAT+TGG - chr7_1:7231427-7231446 Msa1007610:five_prime_UTR 30.0%
TCCAATTACAATATTCCCAA+AGG + chr7_1:7231431-7231450 None:intergenic 30.0%
TGTTTCGTTGAAGGATATTC+TGG + chr7_1:7225061-7225080 None:intergenic 35.0%
!! AATTTGATAGAGGTGTTGGT+TGG + chr7_1:7225226-7225245 None:intergenic 35.0%
! TAGGAATTTGATAGAGGTGT+TGG + chr7_1:7225230-7225249 None:intergenic 35.0%
CCTAATTCGTTGAAACGATT+AGG + chr7_1:7225249-7225268 None:intergenic 35.0%
CCTAATCGTTTCAACGAATT+AGG - chr7_1:7225246-7225265 Msa1007610:three_prime_UTR 35.0%
!! GTGGCTGATTTTTGATCATA+AGG - chr7_1:7225278-7225297 Msa1007610:three_prime_UTR 35.0%
ACGTTCATATCCTTCAAACA+CGG + chr7_1:7225445-7225464 None:intergenic 35.0%
TTCGTGCATGTTTGGTATTA+CGG - chr7_1:7225557-7225576 Msa1007610:intron 35.0%
TCTCAAGTTATTAGCAGTGT+CGG + chr7_1:7225740-7225759 None:intergenic 35.0%
TCCCGACATAATTCAAAATC+GGG - chr7_1:7225962-7225981 Msa1007610:CDS 35.0%
! ACCCCGATTTTGAATTATGT+CGG + chr7_1:7225967-7225986 None:intergenic 35.0%
! TTTGGTTTCAATTTAGGAGG+AGG - chr7_1:7226257-7226276 Msa1007610:intron 35.0%
TTGTAGCTTCCCAAATTTCA+CGG + chr7_1:7226398-7226417 None:intergenic 35.0%
GTACTATTAAAACCGCGTTA+TGG + chr7_1:7226434-7226453 None:intergenic 35.0%
AGTTAATGAACCACTCGATT+CGG + chr7_1:7226542-7226561 None:intergenic 35.0%
TCAAGCTGGAAAAAAGTTTG+TGG - chr7_1:7226577-7226596 Msa1007610:intron 35.0%
ATGTAGCAGCAAAACATGAT+TGG + chr7_1:7226879-7226898 None:intergenic 35.0%
TTTGTATGTATACCATCGTG+TGG - chr7_1:7227123-7227142 Msa1007610:intron 35.0%
AAAACTAGTACAACTGTAGG+AGG + chr7_1:7227262-7227281 None:intergenic 35.0%
CAGAAAACTAGTACAACTGT+AGG + chr7_1:7227265-7227284 None:intergenic 35.0%
!!! ACAGTTGTACTAGTTTTCTG+TGG - chr7_1:7227265-7227284 Msa1007610:intron 35.0%
ACCTCTAATGTTTCCCTTAA+TGG - chr7_1:7227500-7227519 Msa1007610:intron 35.0%
ACCATTAAGGGAAACATTAG+AGG + chr7_1:7227504-7227523 None:intergenic 35.0%
GAGCAACTCAATAACCATTA+AGG + chr7_1:7227517-7227536 None:intergenic 35.0%
ATTTCTGATCTAATAGGGCT+AGG - chr7_1:7227574-7227593 Msa1007610:intron 35.0%
GGTGAACAATTCATCTTAGA+AGG + chr7_1:7227770-7227789 None:intergenic 35.0%
GCGCCTAATTAACTAACAAA+AGG + chr7_1:7227883-7227902 None:intergenic 35.0%
TTTGTTAGTTAATTAGGCGC+TGG - chr7_1:7227883-7227902 Msa1007610:intron 35.0%
TTGTTAGTTAATTAGGCGCT+GGG - chr7_1:7227884-7227903 Msa1007610:intron 35.0%
GCATATTTCCCTTATGTTAG+AGG - chr7_1:7228141-7228160 Msa1007610:intron 35.0%
! CTTTTGACCCTCTAACATAA+GGG + chr7_1:7228152-7228171 None:intergenic 35.0%
! TCTTTTGACCCTCTAACATA+AGG + chr7_1:7228153-7228172 None:intergenic 35.0%
AGACATATTTCCCTAAACAC+GGG - chr7_1:7228170-7228189 Msa1007610:intron 35.0%
TGGCCCCCTATTAAAAAAAA+TGG + chr7_1:7228018-7228037 None:intergenic 35.0%
!! CAGTTTAGCCTTATGAGAAT+AGG - chr7_1:7228265-7228284 Msa1007610:intron 35.0%
TGGCTTACTTGAGTATTTGA+TGG - chr7_1:7228302-7228321 Msa1007610:intron 35.0%
CAAAATGAAAAAGGCGAAGA+GGG + chr7_1:7228575-7228594 None:intergenic 35.0%
ACAAAATGAAAAAGGCGAAG+AGG + chr7_1:7228576-7228595 None:intergenic 35.0%
CCCATAATACAGAAGAAAGA+AGG + chr7_1:7228609-7228628 None:intergenic 35.0%
CGATTTGTAGATTCGGAAAA+TGG - chr7_1:7228649-7228668 Msa1007610:intron 35.0%
AAGTTTGCAGCCAAACATTA+AGG - chr7_1:7228685-7228704 Msa1007610:intron 35.0%
AGTTTGCAGCCAAACATTAA+GGG - chr7_1:7228686-7228705 Msa1007610:intron 35.0%
! AGAAGTACACCCTTAATGTT+TGG + chr7_1:7228698-7228717 None:intergenic 35.0%
TGGTCTCACATAACAATGAA+TGG + chr7_1:7228895-7228914 None:intergenic 35.0%
! ACCATGATAACGCAAAGAAT+TGG - chr7_1:7228911-7228930 Msa1007610:intron 35.0%
ACCAATTCTTTGCGTTATCA+TGG + chr7_1:7228915-7228934 None:intergenic 35.0%
ACAGAATATAAAGGAGATGG+AGG + chr7_1:7228938-7228957 None:intergenic 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr7_1:7229093-7229112 Msa1007610:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr7_1:7229099-7229118 None:intergenic 35.0%
! TTTTAGCAAAGCTACACCTT+AGG - chr7_1:7229120-7229139 Msa1007610:intron 35.0%
TTTAGCAAAGCTACACCTTA+GGG - chr7_1:7229121-7229140 Msa1007610:intron 35.0%
AAGTGGTTAAATACACCCTA+AGG + chr7_1:7229139-7229158 None:intergenic 35.0%
!!! ACACCCACTTACTTTTTAGA+AGG + chr7_1:7229188-7229207 None:intergenic 35.0%
TGTTCTAGCAAATCCTATAG+GGG + chr7_1:7229222-7229241 None:intergenic 35.0%
GTGTTCTAGCAAATCCTATA+GGG + chr7_1:7229223-7229242 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG + chr7_1:7229224-7229243 None:intergenic 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG - chr7_1:7229243-7229262 Msa1007610:intron 35.0%
CACCTTCTAACAAAAACAAG+TGG + chr7_1:7229248-7229267 None:intergenic 35.0%
GTAGGGACTATTATTCAAAG+GGG + chr7_1:7229414-7229433 None:intergenic 35.0%
! CGTTGCTGTTAATTCTCTAA+CGG - chr7_1:7229489-7229508 Msa1007610:intron 35.0%
CTCTAACGGAAATTCTGATT+TGG - chr7_1:7229503-7229522 Msa1007610:intron 35.0%
!! AATTCTGATTTGGCAGTTAG+TGG - chr7_1:7229513-7229532 Msa1007610:intron 35.0%
!! ATTCTGATTTGGCAGTTAGT+GGG - chr7_1:7229514-7229533 Msa1007610:intron 35.0%
!! AGTGGGTCCCAATTATTTTA+AGG - chr7_1:7229531-7229550 Msa1007610:intron 35.0%
TTCAAAGTCACGCAAAATGT+AGG - chr7_1:7229654-7229673 Msa1007610:intron 35.0%
TCAAAGTCACGCAAAATGTA+GGG - chr7_1:7229655-7229674 Msa1007610:intron 35.0%
!! TTAGTGGGTCCCAATATTTT+GGG + chr7_1:7229698-7229717 None:intergenic 35.0%
TAAAGTTAGGAAGACAGTAG+AGG - chr7_1:7229887-7229906 Msa1007610:intron 35.0%
! TCTCTTCAGACATTTCAAGT+TGG - chr7_1:7230184-7230203 Msa1007610:intron 35.0%
! GAAATGCCATTTGCAACATT+AGG + chr7_1:7230238-7230257 None:intergenic 35.0%
GCAATAGGAATCAAATTTGG+TGG + chr7_1:7230342-7230361 None:intergenic 35.0%
CCAGATTAGCAATAAGCAAT+AGG + chr7_1:7230357-7230376 None:intergenic 35.0%
CCTATTGCTTATTGCTAATC+TGG - chr7_1:7230354-7230373 Msa1007610:intron 35.0%
ATTGCTAATCTGGCAAAAAC+AGG - chr7_1:7230364-7230383 Msa1007610:intron 35.0%
ACGAGCAAATCATAAGTGAA+AGG + chr7_1:7230579-7230598 None:intergenic 35.0%
TATTCTCTTATGCAGCTTCA+TGG - chr7_1:7230916-7230935 Msa1007610:intron 35.0%
TTCTGTCGAACATGTCTAAA+AGG - chr7_1:7230971-7230990 Msa1007610:CDS 35.0%
ACATGTCTAAAAGGATGAAC+AGG - chr7_1:7230980-7230999 Msa1007610:CDS 35.0%
CTTATAAAAGCCTTGCATCT+TGG + chr7_1:7231112-7231131 None:intergenic 35.0%
ATGTTTATGTTGTGCAATGC+TGG - chr7_1:7231181-7231200 Msa1007610:intron 35.0%
TGTTCTCCGCTTAAAATCTC+CGG - chr7_1:7225165-7225184 Msa1007610:three_prime_UTR 40.0%
! AGCAGCTGCAGTACAAATTT+TGG + chr7_1:7225496-7225515 None:intergenic 40.0%
AAAATACCGCACCATGATTC+TGG + chr7_1:7225591-7225610 None:intergenic 40.0%
CGTAATGTGCTTCATAGGTA+AGG + chr7_1:7225693-7225712 None:intergenic 40.0%
AGTCTCGTAATGTGCTTCAT+AGG + chr7_1:7225698-7225717 None:intergenic 40.0%
! CCCCGATTTTGAATTATGTC+GGG + chr7_1:7225966-7225985 None:intergenic 40.0%
CCCGACATAATTCAAAATCG+GGG - chr7_1:7225963-7225982 Msa1007610:CDS 40.0%
!! AGTGGTTACTTGGTGTTTCT+TGG - chr7_1:7226070-7226089 Msa1007610:CDS 40.0%
! TGCGATTTTGCCGTGAAATT+TGG - chr7_1:7226385-7226404 Msa1007610:intron 40.0%
! GCGATTTTGCCGTGAAATTT+GGG - chr7_1:7226386-7226405 Msa1007610:intron 40.0%
AAAACGAGTGTAGTTCAAGC+TGG - chr7_1:7226563-7226582 Msa1007610:intron 40.0%
GCAGCAACATGTTATGGTTA+GGG + chr7_1:7226692-7226711 None:intergenic 40.0%
TGCAGCAACATGTTATGGTT+AGG + chr7_1:7226693-7226712 None:intergenic 40.0%
GGAATTGCAGCAACATGTTA+TGG + chr7_1:7226698-7226717 None:intergenic 40.0%
ACATTATGTCTAGACATGGG+TGG - chr7_1:7226933-7226952 Msa1007610:intron 40.0%
! AGGTATGCATTTGAAACAGC+AGG + chr7_1:7227607-7227626 None:intergenic 40.0%
!!! TTTGATGCCCCTCCTTTTTT+TGG - chr7_1:7227640-7227659 Msa1007610:intron 40.0%
AACTCATCACTTGTCAACAG+TGG + chr7_1:7227717-7227736 None:intergenic 40.0%
GTGTGCAACTCAGTTTAGAA+AGG + chr7_1:7227791-7227810 None:intergenic 40.0%
!! TCAGCAATTTTTGGACGAAG+GGG + chr7_1:7228054-7228073 None:intergenic 40.0%
!! CTCAGCAATTTTTGGACGAA+GGG + chr7_1:7228055-7228074 None:intergenic 40.0%
!! TCTCAGCAATTTTTGGACGA+AGG + chr7_1:7228056-7228075 None:intergenic 40.0%
GTCCAAAAATTGCTGAGAAG+AGG - chr7_1:7228058-7228077 Msa1007610:intron 40.0%
!!! GCAATTATGGCCCCTTTTTT+GGG + chr7_1:7228092-7228111 None:intergenic 40.0%
!!! TGCAATTATGGCCCCTTTTT+TGG + chr7_1:7228093-7228112 None:intergenic 40.0%
GACATATTTCCCTAAACACG+GGG - chr7_1:7228171-7228190 Msa1007610:intron 40.0%
ACATATTTCCCTAAACACGG+GGG - chr7_1:7228172-7228191 Msa1007610:intron 40.0%
!! CATGAAATGATAAGCGTCGA+TGG + chr7_1:7228426-7228445 None:intergenic 40.0%
TATAAAGGCTGGAATCGATG+AGG - chr7_1:7228535-7228554 Msa1007610:intron 40.0%
GATTCGGAAAATGGATCTTG+AGG - chr7_1:7228658-7228677 Msa1007610:intron 40.0%
GTGTACTTCTTGCTAAGTTG+CGG - chr7_1:7228708-7228727 Msa1007610:intron 40.0%
TGTACTTCTTGCTAAGTTGC+GGG - chr7_1:7228709-7228728 Msa1007610:intron 40.0%
TGATTCCAACAACATATCCC+GGG + chr7_1:7228807-7228826 None:intergenic 40.0%
CTGATTCCAACAACATATCC+CGG + chr7_1:7228808-7228827 None:intergenic 40.0%
TATGTTGTTGGAATCAGGCA+TGG - chr7_1:7228811-7228830 Msa1007610:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr7_1:7229092-7229111 Msa1007610:intron 40.0%
CACTCCCACATAAAAACTAG+TGG + chr7_1:7229100-7229119 None:intergenic 40.0%
! AAATCCTATAGGGGTTTGCT+AGG + chr7_1:7229213-7229232 None:intergenic 40.0%
!! GATAACGGGGATAAAATGTG+AGG + chr7_1:7229460-7229479 None:intergenic 40.0%
!! GTTAGTGGGTCCCAATATTT+TGG + chr7_1:7229699-7229718 None:intergenic 40.0%
GCATCCCGTTAGAGAATTAA+CGG - chr7_1:7229729-7229748 Msa1007610:intron 40.0%
!! GCAGGGACTAATTTTGAGAA+CGG - chr7_1:7229751-7229770 Msa1007610:intron 40.0%
GAGAACGGAGATAAAATGTG+AGG - chr7_1:7229766-7229785 Msa1007610:intron 40.0%
GTAGGGACTATTCTTCAAAG+AGG - chr7_1:7229812-7229831 Msa1007610:intron 40.0%
! TCAAAGAGGCGCAAAATGTA+AGG - chr7_1:7229826-7229845 Msa1007610:intron 40.0%
!! CTTCAGACATTTCAAGTTGG+TGG - chr7_1:7230187-7230206 Msa1007610:intron 40.0%
TTGAGCCCTAATGTTGCAAA+TGG - chr7_1:7230229-7230248 Msa1007610:intron 40.0%
CAGGAGAACAATGTTGGAAA+CGG - chr7_1:7230463-7230482 Msa1007610:intron 40.0%
GCTGAGAATGCAAATCTTGA+AGG + chr7_1:7230508-7230527 None:intergenic 40.0%
GTGTAACTCTGTAATGGTAG+TGG - chr7_1:7230852-7230871 Msa1007610:intron 40.0%
CGGTGATTTGATCGAAACGA+CGG + chr7_1:7225136-7225155 None:intergenic 45.0%
! TTTTAAGCGGAGAACAGCGA+CGG + chr7_1:7225161-7225180 None:intergenic 45.0%
! AGATCGCCGGAGATTTTAAG+CGG + chr7_1:7225174-7225193 None:intergenic 45.0%
!! TTGATAGAGGTGTTGGTTGG+AGG + chr7_1:7225223-7225242 None:intergenic 45.0%
TCGTTTCAACGAATTAGGCC+TGG - chr7_1:7225251-7225270 Msa1007610:three_prime_UTR 45.0%
CAAAAATCAGCCACGAAACC+AGG + chr7_1:7225272-7225291 None:intergenic 45.0%
! ACGATGAGTACCGTGTTTGA+AGG - chr7_1:7225432-7225451 Msa1007610:CDS 45.0%
!!! CTCGCTTTTTCGTGCATGTT+TGG - chr7_1:7225549-7225568 Msa1007610:intron 45.0%
GTGCATGTTTGGTATTACGG+TGG - chr7_1:7225560-7225579 Msa1007610:intron 45.0%
GATTTGCCAGAATCATGGTG+CGG - chr7_1:7225582-7225601 Msa1007610:intron 45.0%
TATGAAGCACAGACACTCCT+CGG + chr7_1:7225824-7225843 None:intergenic 45.0%
CAACATGTTATGGTTAGGGC+TGG + chr7_1:7226688-7226707 None:intergenic 45.0%
GGACTTTCCCTTTCACACAT+TGG - chr7_1:7227144-7227163 Msa1007610:intron 45.0%
CAGTGCACCAATGTGTGAAA+GGG + chr7_1:7227154-7227173 None:intergenic 45.0%
GCTCAGTTTCTGCGTCAATT+CGG + chr7_1:7227539-7227558 None:intergenic 45.0%
!! CAGCAATTTTTGGACGAAGG+GGG + chr7_1:7228053-7228072 None:intergenic 45.0%
! GGCCTCTTCTCAGCAATTTT+TGG + chr7_1:7228063-7228082 None:intergenic 45.0%
CATATTTCCCTAAACACGGG+GGG - chr7_1:7228173-7228192 Msa1007610:intron 45.0%
CGACGCTTATCATTTCATGC+TGG - chr7_1:7228427-7228446 Msa1007610:intron 45.0%
AATCGATGAGGCAGAAGCTT+TGG - chr7_1:7228547-7228566 Msa1007610:intron 45.0%
CGGGATATGTTGTTGGAATC+AGG - chr7_1:7228806-7228825 Msa1007610:intron 45.0%
AAACCATGATGGCTACGTAC+TGG - chr7_1:7228959-7228978 Msa1007610:intron 45.0%
GTATCCTAGCAAACCCCTAT+AGG - chr7_1:7229206-7229225 Msa1007610:intron 45.0%
ATGCTGATGTGGCAGTTAGT+GGG + chr7_1:7229713-7229732 None:intergenic 45.0%
CCTGCCGTTAATTCTCTAAC+GGG + chr7_1:7229736-7229755 None:intergenic 45.0%
CCCTGCCGTTAATTCTCTAA+CGG + chr7_1:7229737-7229756 None:intergenic 45.0%
CCGTTAGAGAATTAACGGCA+GGG - chr7_1:7229734-7229753 Msa1007610:intron 45.0%
!!! TCTTTTGGTGTTTGCCTCAC+TGG + chr7_1:7229970-7229989 None:intergenic 45.0%
!! CAAGTTGGTGGTGCACAAAA+TGG - chr7_1:7230199-7230218 Msa1007610:intron 45.0%
GTGACAGAATTAAGGACAGC+AGG - chr7_1:7230444-7230463 Msa1007610:intron 45.0%
ATGTTGGAAACGGAAGAGCT+TGG - chr7_1:7230473-7230492 Msa1007610:intron 45.0%
TGTTGGAAACGGAAGAGCTT+GGG - chr7_1:7230474-7230493 Msa1007610:intron 45.0%
CTGCATTATGCAGCGTTTCT+TGG - chr7_1:7230666-7230685 Msa1007610:intron 45.0%
CACACTGTTCGATCTTCTGA+TGG - chr7_1:7230889-7230908 Msa1007610:intron 45.0%
TCTTATGCAGCTTCATGGAG+TGG - chr7_1:7230921-7230940 Msa1007610:intron 45.0%
AAGAACCAGGACTCCAACAA+TGG + chr7_1:7231025-7231044 None:intergenic 45.0%
TTGCATCTTGGCGATTTAGG+AGG + chr7_1:7231100-7231119 None:intergenic 45.0%
TCCTAAATCGCCAAGATGCA+AGG - chr7_1:7231099-7231118 Msa1007610:intron 45.0%
!! AAATATGTATATAAATTAAA+AGG + chr7_1:7226481-7226500 None:intergenic 5.0%
!!! ATTATTATTATTTTTTTGAA+TGG - chr7_1:7227361-7227380 Msa1007610:intron 5.0%
!! ATATATATATATATATATGT+GGG + chr7_1:7229336-7229355 None:intergenic 5.0%
!! TATATATATATATATATATG+TGG + chr7_1:7229337-7229356 None:intergenic 5.0%
!! TATTATTATTATTATGATTA+GGG + chr7_1:7229869-7229888 None:intergenic 5.0%
!! TTATTATTATTATTATGATT+AGG + chr7_1:7229870-7229889 None:intergenic 5.0%
!! ATAATAATAATAATAAAGTT+AGG - chr7_1:7229874-7229893 Msa1007610:intron 5.0%
!! AGAGGTGTTGGTTGGAGGAT+CGG + chr7_1:7225218-7225237 None:intergenic 50.0%
ACGAATTAGGCCTGGTTTCG+TGG - chr7_1:7225259-7225278 Msa1007610:three_prime_UTR 50.0%
ACTGCAGCTGCTGCTCTTAA+TGG - chr7_1:7225504-7225523 Msa1007610:CDS 50.0%
! CGGTGGATTTGCCAGAATCA+TGG - chr7_1:7225577-7225596 Msa1007610:intron 50.0%
GCACATTACGAGACTCAACC+CGG - chr7_1:7225703-7225722 Msa1007610:intron 50.0%
! TTGGTGCTTCGACCATAACG+CGG - chr7_1:7226419-7226438 Msa1007610:intron 50.0%
TGTCTAGACATGGGTGGAAG+TGG - chr7_1:7226939-7226958 Msa1007610:intron 50.0%
GAAAGGGAAAGTCCACACGA+TGG + chr7_1:7227138-7227157 None:intergenic 50.0%
GCAGTGCACCAATGTGTGAA+AGG + chr7_1:7227155-7227174 None:intergenic 50.0%
TGGTGCACTGCTCCTTTCTT+TGG - chr7_1:7227164-7227183 Msa1007610:intron 50.0%
!! AGTTAATTAGGCGCTGGGTG+AGG - chr7_1:7227889-7227908 Msa1007610:intron 50.0%
AGGCCACGTGTCCCAAAAAA+GGG - chr7_1:7228078-7228097 Msa1007610:intron 50.0%
AAAGTGACCCCCCGTGTTTA+GGG + chr7_1:7228183-7228202 None:intergenic 50.0%
AAAAGTGACCCCCCGTGTTT+AGG + chr7_1:7228184-7228203 None:intergenic 50.0%
AACAACATATCCCGGGCAGA+GGG + chr7_1:7228800-7228819 None:intergenic 50.0%
AGGCATGGCAGATGCTATGA+CGG - chr7_1:7228826-7228845 Msa1007610:intron 50.0%
AAGCCAGTACGTAGCCATCA+TGG + chr7_1:7228965-7228984 None:intergenic 50.0%
GATGCTGATGTGGCAGTTAG+TGG + chr7_1:7229714-7229733 None:intergenic 50.0%
TCTCTAACGGGATGCTGATG+TGG + chr7_1:7229724-7229743 None:intergenic 50.0%
CCCGTTAGAGAATTAACGGC+AGG - chr7_1:7229733-7229752 Msa1007610:intron 50.0%
ACTATGGACTCCTTCCAGTG+AGG - chr7_1:7229953-7229972 Msa1007610:intron 50.0%
! TTGGTGTTTGCCTCACTGGA+AGG + chr7_1:7229966-7229985 None:intergenic 50.0%
GGACAGCAGGAGAACAATGT+TGG - chr7_1:7230457-7230476 Msa1007610:intron 50.0%
GTTGGAAACGGAAGAGCTTG+GGG - chr7_1:7230475-7230494 Msa1007610:intron 50.0%
TAGCACCATTGTTGGAGTCC+TGG - chr7_1:7231017-7231036 Msa1007610:CDS 50.0%
!! TTGGCGATTTAGGAGGTGTC+TGG + chr7_1:7231093-7231112 None:intergenic 50.0%
GCCTTGCATCTTGGCGATTT+AGG + chr7_1:7231103-7231122 None:intergenic 50.0%
GGAAAACACCGCTCGAGTTT+CGG - chr7_1:7231448-7231467 Msa1007610:five_prime_UTR 50.0%
GTCAACTACCGAAACTCGAG+CGG + chr7_1:7231459-7231478 None:intergenic 50.0%
GGCATCCACGTGCGTATTGA+CGG - chr7_1:7225015-7225034 Msa1007610:three_prime_UTR 55.0%
TGCTACCGTCAATACGCACG+TGG + chr7_1:7225023-7225042 None:intergenic 55.0%
TGGTTGGAGGATCGGAGATG+TGG + chr7_1:7225210-7225229 None:intergenic 55.0%
GCAGCTGCTGCTCTTAATGG+AGG - chr7_1:7225507-7225526 Msa1007610:CDS 55.0%
GCACAGACACTCCTCGGATA+AGG + chr7_1:7225818-7225837 None:intergenic 55.0%
ACCAATCGAGCCGAATCGAG+TGG - chr7_1:7226529-7226548 Msa1007610:intron 55.0%
!! ACCACTCGATTCGGCTCGAT+TGG + chr7_1:7226533-7226552 None:intergenic 55.0%
GACGCAGAAACTGAGCTCTG+TGG - chr7_1:7227543-7227562 Msa1007610:intron 55.0%
GAGGCCACGTGTCCCAAAAA+AGG - chr7_1:7228077-7228096 Msa1007610:intron 55.0%
GGCCACGTGTCCCAAAAAAG+GGG - chr7_1:7228079-7228098 Msa1007610:intron 55.0%
GTAACATGAACCCCTCTGCC+CGG - chr7_1:7228786-7228805 Msa1007610:intron 55.0%
TAACATGAACCCCTCTGCCC+GGG - chr7_1:7228787-7228806 Msa1007610:intron 55.0%
ACAACATATCCCGGGCAGAG+GGG + chr7_1:7228799-7228818 None:intergenic 55.0%
CAACAACATATCCCGGGCAG+AGG + chr7_1:7228801-7228820 None:intergenic 55.0%
CTCTGCCCGGGATATGTTGT+TGG - chr7_1:7228799-7228818 Msa1007610:intron 55.0%
AGCGGAGAACAGCGACGGAA+CGG + chr7_1:7225156-7225175 None:intergenic 60.0%
CCGGAGGTTGTTGAGATCGC+CGG + chr7_1:7225187-7225206 None:intergenic 60.0%
CCGGCGATCTCAACAACCTC+CGG - chr7_1:7225184-7225203 Msa1007610:three_prime_UTR 60.0%
TGGAGGATCGGAGATGTGGC+CGG + chr7_1:7225206-7225225 None:intergenic 60.0%
!! AGTGTCGGCGTGTCAGTGTC+CGG + chr7_1:7225725-7225744 None:intergenic 60.0%
TGTCGGTGTGAGACACGCCA+GGG - chr7_1:7225788-7225807 Msa1007610:intron 60.0%
!! TCCTCGGATAAGGAGTGCCC+TGG + chr7_1:7225808-7225827 None:intergenic 60.0%
!!! GGCCCCTTTTTTGGGACACG+TGG + chr7_1:7228084-7228103 None:intergenic 60.0%
AGGATCGGAGATGTGGCCGG+AGG + chr7_1:7225203-7225222 None:intergenic 65.0%
! GTGTCGGCGTGTCAGTGTCC+GGG + chr7_1:7225724-7225743 None:intergenic 65.0%
! GTGTCGGTGTGAGACACGCC+AGG - chr7_1:7225787-7225806 Msa1007610:intron 65.0%
! GCCAGGGCACTCCTTATCCG+AGG - chr7_1:7225804-7225823 Msa1007610:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 7225002 7231490 7225002 ID=Msa1007610;Name=Msa1007610
chr7_1 mRNA 7225002 7231490 7225002 ID=Msa1007610-mRNA-1;Parent=Msa1007610;Name=Msa1007610-mRNA-1;_AED=0.07;_eAED=0.07;_QI=301|0.8|0.83|1|0.8|0.66|6|407|221
chr7_1 exon 7225002 7225561 7225002 ID=Msa1007610-mRNA-1:exon:2208;Parent=Msa1007610-mRNA-1
chr7_1 exon 7225936 7226106 7225936 ID=Msa1007610-mRNA-1:exon:2207;Parent=Msa1007610-mRNA-1
chr7_1 exon 7227645 7227833 7227645 ID=Msa1007610-mRNA-1:exon:2206;Parent=Msa1007610-mRNA-1
chr7_1 exon 7227924 7227982 7227924 ID=Msa1007610-mRNA-1:exon:2205;Parent=Msa1007610-mRNA-1
chr7_1 exon 7230964 7231060 7230964 ID=Msa1007610-mRNA-1:exon:2204;Parent=Msa1007610-mRNA-1
chr7_1 exon 7231193 7231490 7231193 ID=Msa1007610-mRNA-1:exon:2203;Parent=Msa1007610-mRNA-1
chr7_1 five_prime_UTR 7231193 7231490 7231193 ID=Msa1007610-mRNA-1:five_prime_utr;Parent=Msa1007610-mRNA-1
chr7_1 five_prime_UTR 7231058 7231060 7231058 ID=Msa1007610-mRNA-1:five_prime_utr;Parent=Msa1007610-mRNA-1
chr7_1 CDS 7230964 7231057 7230964 ID=Msa1007610-mRNA-1:cds;Parent=Msa1007610-mRNA-1
chr7_1 CDS 7227924 7227982 7227924 ID=Msa1007610-mRNA-1:cds;Parent=Msa1007610-mRNA-1
chr7_1 CDS 7227645 7227833 7227645 ID=Msa1007610-mRNA-1:cds;Parent=Msa1007610-mRNA-1
chr7_1 CDS 7225936 7226106 7225936 ID=Msa1007610-mRNA-1:cds;Parent=Msa1007610-mRNA-1
chr7_1 CDS 7225409 7225561 7225409 ID=Msa1007610-mRNA-1:cds;Parent=Msa1007610-mRNA-1
chr7_1 three_prime_UTR 7225002 7225408 7225002 ID=Msa1007610-mRNA-1:three_prime_utr;Parent=Msa1007610-mRNA-1
Gene Sequence

>Msa1007610

ATGAGTACCGTGTTTGAAGGATATGAACGTCAATACTGCGAGCTTTCTGCTAAACTATCCAAAATTTGTACTGCAGCTGCTGCTCTTAATGGAGAGCAAAAGAAGCAAAATATTTCAGATATAAAGGCTGGAATCGATGAGGCAGAAGCTTTGATTCGGAAAATGGATCTTGAGGCAAGAAGTTTGCAGCCAAACATTAAGGGTGTACTTCTTGCTAAGTTGCGGGAATACAAATCAGATCTGAACAATAATAAAAGCGAACTTAAGAAACTTGTATCTGGTAACATGAACCCCTCTGCCCGGGATATGTTGTTGGAATCAGGCATGGCAGATGCTATGACGGTATCAGCTGATCAAAGAGACAGATTAATGTTTTCAACTGAGAAGTTGAACAAATCTAGTGACAGAATTAAGGACAGCAGGAGAACAATGTTGGAAACGGAAGAGCTTGGGGTTTCAATCCTTCAAGATTTGCATTCTCAGCGACAATCTCTACTGCATGCACATGACACACTTCATGGAGTGGATGATAACGTAAGCAAGAGCAAGAAAATTCTGTCGAACATGTCTAAAAGGATGAACAGGAACAAGTGTATTATTAGCACCATTGTTGGAGTCCTGGTTCTTGTTATTATCTTGACTCTGTACTTCAAACTTTCAAAATAG

Protein sequence

>Msa1007610

MSTVFEGYERQYCELSAKLSKICTAAAALNGEQKKQNISDIKAGIDEAEALIRKMDLEARSLQPNIKGVLLAKLREYKSDLNNNKSELKKLVSGNMNPSARDMLLESGMADAMTVSADQRDRLMFSTEKLNKSSDRIKDSRRTMLETEELGVSILQDLHSQRQSLLHAHDTLHGVDDNVSKSKKILSNMSKRMNRNKCIISTIVGVLVLVIILTLYFKLSK*