Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801620 | XP_003612546.1 | 93.095 | 391 | 25 | 1 | 1 | 389 | 1 | 391 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801620 | sp|A8MS41|CCR4D_ARATH | 56.204 | 411 | 127 | 5 | 17 | 389 | 22 | 417 | 3.50e-153 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801620 | G7K5F4 | 93.095 | 391 | 25 | 1 | 1 | 389 | 1 | 391 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0115190 | Msa0801620 | -0.806356 | 8.559977e-50 | -8.615850e-47 |
| Msa0801620 | Msa1039810 | -0.811267 | 7.623782e-51 | -8.615850e-47 |
| Msa0801620 | Msa1165270 | -0.809952 | 1.467350e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801620 | MtrunA17_Chr5g0408891 | 93.095 | 391 | 25 | 1 | 1 | 389 | 1 | 391 | 0.0 | 754 |
| Msa0801620 | MtrunA17_Chr1g0176001 | 27.126 | 435 | 231 | 15 | 1 | 388 | 102 | 497 | 2.73e-30 | 121 |
| Msa0801620 | MtrunA17_Chr1g0175921 | 27.126 | 435 | 231 | 15 | 1 | 388 | 192 | 587 | 3.20e-30 | 122 |
| Msa0801620 | MtrunA17_Chr7g0268331 | 28.079 | 406 | 209 | 11 | 30 | 389 | 228 | 596 | 5.37e-30 | 121 |
| Msa0801620 | MtrunA17_Chr6g0484571 | 26.076 | 395 | 189 | 13 | 52 | 388 | 62 | 411 | 7.82e-21 | 93.6 |
| Msa0801620 | MtrunA17_Chr1g0148921 | 26.357 | 258 | 126 | 9 | 45 | 293 | 170 | 372 | 8.50e-18 | 85.5 |
| Msa0801620 | MtrunA17_Chr1g0175941 | 26.974 | 152 | 100 | 5 | 1 | 142 | 420 | 570 | 1.05e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801620 | AT1G31500.1 | 60.465 | 387 | 133 | 5 | 8 | 389 | 17 | 388 | 1.59e-161 | 459 |
| Msa0801620 | AT1G31500.5 | 61.273 | 377 | 127 | 4 | 17 | 389 | 22 | 383 | 2.54e-161 | 458 |
| Msa0801620 | AT1G31500.2 | 61.662 | 373 | 124 | 4 | 21 | 389 | 1 | 358 | 2.92e-160 | 454 |
| Msa0801620 | AT1G31500.7 | 55.582 | 421 | 133 | 6 | 8 | 389 | 17 | 422 | 3.36e-154 | 441 |
| Msa0801620 | AT1G31500.4 | 56.204 | 411 | 127 | 5 | 17 | 389 | 22 | 417 | 3.56e-154 | 441 |
| Msa0801620 | AT1G31500.6 | 58.596 | 285 | 101 | 3 | 8 | 288 | 17 | 288 | 3.45e-114 | 335 |
| Msa0801620 | AT1G31500.3 | 59.636 | 275 | 95 | 2 | 17 | 288 | 22 | 283 | 5.72e-114 | 334 |
| Msa0801620 | AT1G31500.8 | 53.074 | 309 | 95 | 3 | 17 | 288 | 22 | 317 | 9.43e-107 | 317 |
| Msa0801620 | AT1G31530.1 | 37.117 | 326 | 151 | 8 | 65 | 386 | 4 | 279 | 2.05e-52 | 176 |
| Msa0801620 | AT3G58560.1 | 26.636 | 428 | 224 | 11 | 12 | 387 | 204 | 593 | 1.31e-29 | 120 |
| Msa0801620 | AT3G58580.1 | 26.667 | 435 | 226 | 13 | 3 | 385 | 202 | 595 | 1.17e-27 | 115 |
| Msa0801620 | AT3G18500.4 | 26.972 | 393 | 169 | 13 | 49 | 384 | 108 | 439 | 1.00e-26 | 111 |
| Msa0801620 | AT3G18500.2 | 27.273 | 396 | 167 | 14 | 49 | 384 | 108 | 442 | 2.24e-26 | 110 |
| Msa0801620 | AT3G18500.3 | 26.700 | 397 | 169 | 13 | 49 | 384 | 108 | 443 | 3.50e-26 | 109 |
| Msa0801620 | AT1G73875.1 | 23.881 | 402 | 197 | 13 | 49 | 389 | 99 | 452 | 2.94e-22 | 98.6 |
| Msa0801620 | AT5G11350.5 | 25.911 | 247 | 137 | 7 | 49 | 292 | 22 | 225 | 4.15e-19 | 89.7 |
| Msa0801620 | AT5G11350.1 | 25.249 | 301 | 155 | 8 | 45 | 323 | 178 | 430 | 6.77e-19 | 89.4 |
| Msa0801620 | AT5G11350.2 | 25.249 | 301 | 155 | 8 | 45 | 323 | 178 | 430 | 7.12e-19 | 89.0 |
| Msa0801620 | AT5G11350.4 | 25.249 | 301 | 155 | 8 | 45 | 323 | 179 | 431 | 7.35e-19 | 89.0 |
| Msa0801620 | AT5G11350.3 | 25.249 | 301 | 155 | 8 | 45 | 323 | 178 | 430 | 8.07e-19 | 89.0 |
| Msa0801620 | AT1G73875.2 | 25.490 | 255 | 142 | 9 | 49 | 301 | 99 | 307 | 1.58e-17 | 84.0 |
Find 97 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTGCTGTGTATTATTT+TGG | 0.033476 | 5_3:+15708310 | Msa0801620:three_prime_UTR |
| GGCTTCAACTGATATGAATT+TGG | 0.153010 | 5_3:-15703557 | None:intergenic |
| TTCTGATGCAGGACCTAAAT+TGG | 0.171248 | 5_3:+15706642 | Msa0801620:intron |
| CCTTGTCTCCTATAACATTT+TGG | 0.193392 | 5_3:+15703735 | Msa0801620:CDS |
| TAGCCAACACACATCTTTAT+TGG | 0.200756 | 5_3:+15706776 | Msa0801620:CDS |
| TTCCTTGATGAAAATTTCTT+AGG | 0.274006 | 5_3:+15708140 | Msa0801620:three_prime_UTR |
| GCGTGATTGTGTTGGAATTC+TGG | 0.283637 | 5_3:+15706711 | Msa0801620:CDS |
| AGAGACGAAGGAGGTGAGTA+TGG | 0.287346 | 5_3:-15704120 | None:intergenic |
| CGATCTACTGTACCCAATTT+AGG | 0.298320 | 5_3:-15706655 | None:intergenic |
| GTTTATCTGGCTGGGTTGTC+TGG | 0.301301 | 5_3:-15705806 | None:intergenic |
| ATATCAACTGCTTCAGAATC+TGG | 0.308260 | 5_3:-15707894 | None:intergenic |
| GTAACCGCAAATCTATCTAT+AGG | 0.317941 | 5_3:+15703307 | Msa0801620:five_prime_UTR |
| ATGAATTTGGGATATGATAT+TGG | 0.325599 | 5_3:-15703544 | None:intergenic |
| CAATCTGCATTTACCAGCTT+TGG | 0.335174 | 5_3:-15705844 | None:intergenic |
| CTTACCATCAGGTTTAGTTC+TGG | 0.346738 | 5_3:-15703593 | None:intergenic |
| TCTCATGTTTACAGGTTTAT+CGG | 0.353133 | 5_3:+15707673 | Msa0801620:intron |
| TAGACACTACTTAGAGGAAT+TGG | 0.359910 | 5_3:-15707753 | None:intergenic |
| GCTTCAACTGATATGAATTT+GGG | 0.366536 | 5_3:-15703556 | None:intergenic |
| GTTTATCGGTATCTCGTATC+AGG | 0.375163 | 5_3:+15707687 | Msa0801620:CDS |
| TCACTTGGATGACTCAAGTT+TGG | 0.382846 | 5_3:-15707930 | None:intergenic |
| TACCTGAGCCAAAATGTTAT+AGG | 0.386114 | 5_3:-15703743 | None:intergenic |
| CCAGGTGTGTAATTTGTAAA+TGG | 0.387093 | 5_3:-15707798 | None:intergenic |
| ATGAACATGATAATACTCAT+AGG | 0.388719 | 5_3:-15708059 | None:intergenic |
| CCAAGTGATCATTTACCAAT+TGG | 0.400115 | 5_3:+15707945 | Msa0801620:CDS |
| TTTAGTTCTGGAATGTATAT+CGG | 0.406679 | 5_3:-15703581 | None:intergenic |
| GTTTAGTGCAGAGTTGCTCT+TGG | 0.409527 | 5_3:+15705704 | Msa0801620:intron |
| TAGTCTCACACGAGGATCAT+TGG | 0.413853 | 5_3:-15706686 | None:intergenic |
| TAACCGCAAATCTATCTATA+GGG | 0.417131 | 5_3:+15703308 | Msa0801620:five_prime_UTR |
| CAAAGGAAGGATGCAGGAGC+TGG | 0.427052 | 5_3:+15704447 | Msa0801620:CDS |
| CCATATGAAGAGTTCTCATC+TGG | 0.427848 | 5_3:-15705765 | None:intergenic |
| ACGAAAGCAGAAATTTAAGT+TGG | 0.440270 | 5_3:+15703252 | None:intergenic |
| AATTACACACCTGGCTTCAC+CGG | 0.444856 | 5_3:+15707807 | Msa0801620:CDS |
| TTTAGAAGTTCTCAAGAACT+TGG | 0.445338 | 5_3:+15704277 | Msa0801620:CDS |
| TCTGATGCAGGACCTAAATT+GGG | 0.446665 | 5_3:+15706643 | Msa0801620:intron |
| ATTTCAAATTCAGCACCAAT+TGG | 0.447157 | 5_3:-15707960 | None:intergenic |
| GAAGCATAGACACTACTTAG+AGG | 0.447994 | 5_3:-15707759 | None:intergenic |
| AGTCTCACACGAGGATCATT+GGG | 0.450974 | 5_3:-15706685 | None:intergenic |
| TCGCCGGCCACAATCACTTC+AGG | 0.453606 | 5_3:-15707051 | None:intergenic |
| TCATGATATTAACGACTAGA+AGG | 0.467808 | 5_3:+15708078 | Msa0801620:three_prime_UTR |
| CCAGATGAGAACTCTTCATA+TGG | 0.468323 | 5_3:+15705765 | Msa0801620:CDS |
| TAATATATAATCAAGCGTTC+CGG | 0.474855 | 5_3:-15707826 | None:intergenic |
| AAGGATAATGCGACCAAAGC+TGG | 0.476836 | 5_3:+15705831 | Msa0801620:CDS |
| CCATTTACAAATTACACACC+TGG | 0.485021 | 5_3:+15707798 | Msa0801620:CDS |
| TCTATTTATATGAAGAGAAG+TGG | 0.487325 | 5_3:+15704478 | Msa0801620:CDS |
| TCTGAAGCAGTTGATATTGT+TGG | 0.491623 | 5_3:+15707900 | Msa0801620:CDS |
| TACAATAAGAAATTGTTGAG+AGG | 0.497016 | 5_3:-15706755 | None:intergenic |
| TCAGTAATCAGTTCTGATGA+AGG | 0.498552 | 5_3:-15707714 | None:intergenic |
| CAACTCTCAGCCAGGAGATC+CGG | 0.501892 | 5_3:+15707077 | Msa0801620:CDS |
| ATGCTAGGTACCGGATCTCC+TGG | 0.504948 | 5_3:-15707087 | None:intergenic |
| GGAAGCTCGAGATAGCTAAC+TGG | 0.507220 | 5_3:-15707873 | None:intergenic |
| TAAATACCTAGTTGCGGAGA+GGG | 0.509266 | 5_3:-15703363 | None:intergenic |
| ACTGATTACTGATTGTATAG+AGG | 0.511248 | 5_3:+15707725 | Msa0801620:CDS |
| TAGTGCAGAGTTGCTCTTGG+AGG | 0.513067 | 5_3:+15705707 | Msa0801620:intron |
| CCAATTGGTAAATGATCACT+TGG | 0.514902 | 5_3:-15707945 | None:intergenic |
| TGCTGAATTTGAAATCATCA+AGG | 0.517114 | 5_3:+15707968 | Msa0801620:CDS |
| GGCGACTTCAACTCTCAGCC+AGG | 0.519345 | 5_3:+15707069 | Msa0801620:CDS |
| GAGACGAAGGAGGTGAGTAT+GGG | 0.529339 | 5_3:-15704119 | None:intergenic |
| AACCCAGCCAGATAAACAAA+AGG | 0.530228 | 5_3:+15705812 | Msa0801620:CDS |
| GAAGCAGTTGATATTGTTGG+TGG | 0.533751 | 5_3:+15707903 | Msa0801620:CDS |
| CTGGCTGCATTTAAATTCAA+CGG | 0.536380 | 5_3:+15706730 | Msa0801620:CDS |
| TCAAGCGTTCCGGTGAAGCC+AGG | 0.539791 | 5_3:-15707816 | None:intergenic |
| ATACCCTATAGATAGATTTG+CGG | 0.543764 | 5_3:-15703311 | None:intergenic |
| TTAGAAGTTCTCAAGAACTT+GGG | 0.544623 | 5_3:+15704278 | Msa0801620:CDS |
| ACTGGTTTCATGTGGTCAGA+GGG | 0.548085 | 5_3:-15707855 | None:intergenic |
| CTTGTCACAATTTAAAACAC+TGG | 0.553960 | 5_3:+15707005 | Msa0801620:CDS |
| CTCCTTCCCTCTCCGCAACT+AGG | 0.555387 | 5_3:+15703357 | Msa0801620:CDS |
| AGGGTTTCAAGATTGACAAA+GGG | 0.555645 | 5_3:-15708039 | None:intergenic |
| TTACCAATAAAGATGTGTGT+TGG | 0.558067 | 5_3:-15706779 | None:intergenic |
| TGAACATGATAATACTCATA+GGG | 0.562296 | 5_3:-15708058 | None:intergenic |
| AGTGTCTATGCTTCTACAAG+AGG | 0.563020 | 5_3:+15707768 | Msa0801620:CDS |
| TAGGGTTTCAAGATTGACAA+AGG | 0.565595 | 5_3:-15708040 | None:intergenic |
| ACAATAAGAAATTGTTGAGA+GGG | 0.569461 | 5_3:-15706754 | None:intergenic |
| AGACTAAAGCGTGATTGTGT+TGG | 0.575207 | 5_3:+15706703 | Msa0801620:CDS |
| AAAGGAAGGATGCAGGAGCT+GGG | 0.578041 | 5_3:+15704448 | Msa0801620:CDS |
| AACTGGTTTCATGTGGTCAG+AGG | 0.578328 | 5_3:-15707856 | None:intergenic |
| GTAAGTTACTTGAGAGACGA+AGG | 0.585748 | 5_3:-15704132 | None:intergenic |
| ATAAATACCTAGTTGCGGAG+AGG | 0.586586 | 5_3:-15703364 | None:intergenic |
| TACCTAGTTGCGGAGAGGGA+AGG | 0.587229 | 5_3:-15703359 | None:intergenic |
| CCAAAATGTTATAGGAGACA+AGG | 0.597671 | 5_3:-15703735 | None:intergenic |
| TCAATTACTTCAGTGTTGTG+AGG | 0.599086 | 5_3:+15703506 | Msa0801620:intron |
| CAGTAATCAGTTCTGATGAA+GGG | 0.601957 | 5_3:-15707713 | None:intergenic |
| AAGCCTGAAGTGATTGTGGC+CGG | 0.607012 | 5_3:+15707048 | Msa0801620:CDS |
| TTCAGCTGCAAATTTATCAG+AGG | 0.608153 | 5_3:-15708182 | None:intergenic |
| CTAGTTGCGGAGAGGGAAGG+AGG | 0.616139 | 5_3:-15703356 | None:intergenic |
| CATTCCAGAACTAAACCTGA+TGG | 0.620976 | 5_3:+15703589 | Msa0801620:CDS |
| GGTGTGTAATTTGTAAATGG+TGG | 0.623521 | 5_3:-15707795 | None:intergenic |
| ATGTACCAGGGATCCTGAGT+GGG | 0.626562 | 5_3:+15706942 | Msa0801620:intron |
| ACTATATAAATACCTAGTTG+CGG | 0.631904 | 5_3:-15703369 | None:intergenic |
| ATGCAAGCCTGAAGTGATTG+TGG | 0.637832 | 5_3:+15707044 | Msa0801620:CDS |
| AGTTCTGGAATGTATATCGG+CGG | 0.653177 | 5_3:-15703578 | None:intergenic |
| TGGCTGAGAGTTGAAGTCGC+CGG | 0.660546 | 5_3:-15707067 | None:intergenic |
| TATGTACCAGGGATCCTGAG+TGG | 0.661692 | 5_3:+15706941 | Msa0801620:intron |
| CTGGTTTCATGTGGTCAGAG+GGG | 0.662284 | 5_3:-15707854 | None:intergenic |
| AAATTGGGTACAGTAGATCG+TGG | 0.665355 | 5_3:+15706658 | Msa0801620:CDS |
| GATAGCTAACTGGTTTCATG+TGG | 0.674895 | 5_3:-15707863 | None:intergenic |
| AGTTACTTGAGAGACGAAGG+AGG | 0.683391 | 5_3:-15704129 | None:intergenic |
| TCACGCTTTAGTCTCACACG+AGG | 0.758091 | 5_3:-15706694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTTTAAATCAAATATT+GGG | - | chr5_3:15705257-15705276 | None:intergenic | 10.0% |
| !!! | TCAATTTTTAAATCAAATAT+TGG | - | chr5_3:15705258-15705277 | None:intergenic | 10.0% |
| !! | CAAATTGATATTATAATTAA+TGG | - | chr5_3:15706006-15706025 | None:intergenic | 10.0% |
| !! | TTAATTATAATATCAATTTG+CGG | + | chr5_3:15706006-15706025 | Msa0801620:intron | 10.0% |
| !! | TAATAATAATAATAATTGCT+AGG | + | chr5_3:15706040-15706059 | Msa0801620:intron | 10.0% |
| !! | ATGAATTAATTATTAATAGA+AGG | + | chr5_3:15706258-15706277 | Msa0801620:intron | 10.0% |
| !! | TAATTTAAACTAAAGATTAT+TGG | - | chr5_3:15707374-15707393 | None:intergenic | 10.0% |
| !! | ATAAATAATACAATATTATG+AGG | + | chr5_3:15707515-15707534 | Msa0801620:intron | 10.0% |
| !! | TAATAATTCAATTAGTTAGT+TGG | + | chr5_3:15703650-15703669 | Msa0801620:intron | 15.0% |
| !!! | CTATTAAACAAATTTTTCAA+AGG | - | chr5_3:15705386-15705405 | None:intergenic | 15.0% |
| !! | ATTGCATAAAAACAAATAAT+GGG | - | chr5_3:15706194-15706213 | None:intergenic | 15.0% |
| !!! | ATTGATAATTATCAATGAAT+CGG | + | chr5_3:15706215-15706234 | Msa0801620:intron | 15.0% |
| !! | ATTAATTATTAATAGAAGGA+AGG | + | chr5_3:15706262-15706281 | Msa0801620:intron | 15.0% |
| !! | TTAATTATTAATAGAAGGAA+GGG | + | chr5_3:15706263-15706282 | Msa0801620:intron | 15.0% |
| !!! | TTGACTTTTAAATGAATTTT+TGG | + | chr5_3:15706841-15706860 | Msa0801620:intron | 15.0% |
| !! | ATAAAAATAAGTTTGGAAAT+AGG | - | chr5_3:15707193-15707212 | None:intergenic | 15.0% |
| !! | TTAAAATAAGCATACTATAT+AGG | - | chr5_3:15707334-15707353 | None:intergenic | 15.0% |
| !! | TCAACTCTATAATATATTCA+AGG | + | chr5_3:15703430-15703449 | Msa0801620:intron | 20.0% |
| !! | AATTGAAATTGAATTGAGTA+AGG | - | chr5_3:15703492-15703511 | None:intergenic | 20.0% |
| !! | TAATGTATCTATGTATATAC+AGG | - | chr5_3:15704026-15704045 | None:intergenic | 20.0% |
| !!! | AATACTTTGTTATGTAATGT+AGG | + | chr5_3:15704074-15704093 | Msa0801620:intron | 20.0% |
| !! | AAATAAAAGAAAAAACCTGT+AGG | - | chr5_3:15704319-15704338 | None:intergenic | 20.0% |
| !! | TTGAATAATGTTCTTTGTTA+TGG | + | chr5_3:15704385-15704404 | Msa0801620:intron | 20.0% |
| !!! | ATTTTAGATTTTGGATTTGA+GGG | - | chr5_3:15704859-15704878 | None:intergenic | 20.0% |
| !!! | TATGATACCATTTTAGATTT+TGG | - | chr5_3:15704868-15704887 | None:intergenic | 20.0% |
| !! | TCTATCCTAGATTTATTATT+TGG | + | chr5_3:15704889-15704908 | Msa0801620:intron | 20.0% |
| !!! | AATTCAAAAAGCATATATTC+CGG | - | chr5_3:15705201-15705220 | None:intergenic | 20.0% |
| !! | ATTCATGAATAACAAAAATC+CGG | + | chr5_3:15705414-15705433 | Msa0801620:intron | 20.0% |
| !! | TATAATTAATGGCTAAGATT+TGG | - | chr5_3:15705995-15706014 | None:intergenic | 20.0% |
| !! | GATTGCATAAAAACAAATAA+TGG | - | chr5_3:15706195-15706214 | None:intergenic | 20.0% |
| !! | TGTGAATGAATTAAAACATT+TGG | - | chr5_3:15706405-15706424 | None:intergenic | 20.0% |
| !! | AATCTAGACAAAATAAGAAA+CGG | - | chr5_3:15707132-15707151 | None:intergenic | 20.0% |
| !!! | TAAAGATTATTGGTTTAGTT+TGG | - | chr5_3:15707364-15707383 | None:intergenic | 20.0% |
| !! | GTAAAACATTCTATGAAATA+CGG | - | chr5_3:15707641-15707660 | None:intergenic | 20.0% |
| !!! | ATCTTTTTGAAGAAAGAAAA+TGG | + | chr5_3:15708204-15708223 | Msa0801620:three_prime_UTR | 20.0% |
| ! | ACTATATAAATACCTAGTTG+CGG | - | chr5_3:15703372-15703391 | None:intergenic | 25.0% |
| !! | ATGAATTTGGGATATGATAT+TGG | - | chr5_3:15703547-15703566 | None:intergenic | 25.0% |
| !!! | TTTAGTTCTGGAATGTATAT+CGG | - | chr5_3:15703584-15703603 | None:intergenic | 25.0% |
| ! | CACGTATAATTCATTATTAC+CGG | - | chr5_3:15703896-15703915 | None:intergenic | 25.0% |
| ! | GCAAAAAATTGTTACGTTAT+CGG | - | chr5_3:15704185-15704204 | None:intergenic | 25.0% |
| ! | ACTCAAATAATCAAAACTCA+AGG | - | chr5_3:15704357-15704376 | None:intergenic | 25.0% |
| !!! | TTGTTATGGTGATTTTTTTC+AGG | + | chr5_3:15704399-15704418 | Msa0801620:intron | 25.0% |
| ! | TCTATTTATATGAAGAGAAG+TGG | + | chr5_3:15704478-15704497 | Msa0801620:CDS | 25.0% |
| !!! | TAGCTTTTAGTTTTACATTC+AGG | + | chr5_3:15704579-15704598 | Msa0801620:intron | 25.0% |
| !! | ATTTTCAAAACATTGATCGT+AGG | - | chr5_3:15704670-15704689 | None:intergenic | 25.0% |
| !!! | TACGATCAATGTTTTGAAAA+TGG | + | chr5_3:15704669-15704688 | Msa0801620:intron | 25.0% |
| ! | TTGCAGTAAAATATAACTGA+TGG | - | chr5_3:15704732-15704751 | None:intergenic | 25.0% |
| !!! | GCAATTTTTTCACTATATCA+AGG | + | chr5_3:15704748-15704767 | Msa0801620:intron | 25.0% |
| !! | CATTTTAGATTTTGGATTTG+AGG | - | chr5_3:15704860-15704879 | None:intergenic | 25.0% |
| ! | CTCAAATCCAAAATCTAAAA+TGG | + | chr5_3:15704858-15704877 | Msa0801620:intron | 25.0% |
| ! | CTTGACCAAATAATAAATCT+AGG | - | chr5_3:15704897-15704916 | None:intergenic | 25.0% |
| !! | CTAAGGTTTTTCTTAGAATT+TGG | - | chr5_3:15705165-15705184 | None:intergenic | 25.0% |
| ! | AAAAATCCGGAAGTAATTAT+GGG | + | chr5_3:15705427-15705446 | Msa0801620:intron | 25.0% |
| !! | TTTTTCGTTCTTTCATTTTC+TGG | + | chr5_3:15705576-15705595 | Msa0801620:intron | 25.0% |
| ! | ACACACACATATTTATAAGA+AGG | + | chr5_3:15705932-15705951 | Msa0801620:intron | 25.0% |
| ! | CACACACATATTTATAAGAA+GGG | + | chr5_3:15705933-15705952 | Msa0801620:intron | 25.0% |
| ! | ACAATAAGAAATTGTTGAGA+GGG | - | chr5_3:15706757-15706776 | None:intergenic | 25.0% |
| ! | TACAATAAGAAATTGTTGAG+AGG | - | chr5_3:15706758-15706777 | None:intergenic | 25.0% |
| ! | TACATACAAATTTATGTACC+AGG | + | chr5_3:15706929-15706948 | Msa0801620:intron | 25.0% |
| ! | ACATACAAATTTATGTACCA+GGG | + | chr5_3:15706930-15706949 | Msa0801620:intron | 25.0% |
| !!! | CTTAAGATTTTAGAAATGCT+AGG | - | chr5_3:15707105-15707124 | None:intergenic | 25.0% |
| ! | ATCTAGACAAAATAAGAAAC+GGG | - | chr5_3:15707131-15707150 | None:intergenic | 25.0% |
| !! | TTTTTACAAGAAAAGGGTTA+TGG | - | chr5_3:15707300-15707319 | None:intergenic | 25.0% |
| !! | TAACCCTTTTCTTGTAAAAA+CGG | + | chr5_3:15707300-15707319 | Msa0801620:intron | 25.0% |
| ! | GAAAGATTTATTAGAGTACA+TGG | - | chr5_3:15707407-15707426 | None:intergenic | 25.0% |
| ! | CTAATAAATCTTTCTACCAT+CGG | + | chr5_3:15707413-15707432 | Msa0801620:intron | 25.0% |
| !!! | TGCTCTTTTGTTGTTTAAAT+TGG | + | chr5_3:15707553-15707572 | Msa0801620:intron | 25.0% |
| ! | TAATATATAATCAAGCGTTC+CGG | - | chr5_3:15707829-15707848 | None:intergenic | 25.0% |
| ! | TGAACATGATAATACTCATA+GGG | - | chr5_3:15708061-15708080 | None:intergenic | 25.0% |
| ! | ATGAACATGATAATACTCAT+AGG | - | chr5_3:15708062-15708081 | None:intergenic | 25.0% |
| ! | TTCCTTGATGAAAATTTCTT+AGG | + | chr5_3:15708140-15708159 | Msa0801620:three_prime_UTR | 25.0% |
| !! | ATCCTAAGAAATTTTCATCA+AGG | - | chr5_3:15708145-15708164 | None:intergenic | 25.0% |
| !! | ATATGTTTTACATGAATCAG+AGG | - | chr5_3:15708268-15708287 | None:intergenic | 25.0% |
| TAACCGCAAATCTATCTATA+GGG | + | chr5_3:15703308-15703327 | Msa0801620:five_prime_UTR | 30.0% | |
| ATACCCTATAGATAGATTTG+CGG | - | chr5_3:15703314-15703333 | None:intergenic | 30.0% | |
| GCTTCAACTGATATGAATTT+GGG | - | chr5_3:15703559-15703578 | None:intergenic | 30.0% | |
| ! | TATTACGCGAAAAGTATAAG+AGG | - | chr5_3:15703635-15703654 | None:intergenic | 30.0% |
| !! | TATTTGTTATCAAGTGTCGA+TGG | + | chr5_3:15703972-15703991 | Msa0801620:intron | 30.0% |
| ! | TTGATTTTGCTTTCTGTAGA+TGG | + | chr5_3:15704234-15704253 | Msa0801620:intron | 30.0% |
| TTTAGAAGTTCTCAAGAACT+TGG | + | chr5_3:15704277-15704296 | Msa0801620:CDS | 30.0% | |
| TTAGAAGTTCTCAAGAACTT+GGG | + | chr5_3:15704278-15704297 | Msa0801620:CDS | 30.0% | |
| !! | GAGTTTGATAGCTTTTACAA+AGG | + | chr5_3:15704430-15704449 | Msa0801620:CDS | 30.0% |
| !! | TTGATAGCTTTTACAAAGGA+AGG | + | chr5_3:15704434-15704453 | Msa0801620:CDS | 30.0% |
| TGCAAAAACATTGTACATAC+CGG | - | chr5_3:15704546-15704565 | None:intergenic | 30.0% | |
| !!! | ATAGTTTTAGATCACAATCG+CGG | - | chr5_3:15704786-15704805 | None:intergenic | 30.0% |
| ACTCTTAACATATTACGCTT+CGG | - | chr5_3:15705037-15705056 | None:intergenic | 30.0% | |
| !! | TAATTAGTTCTTTTCCTGCT+TGG | + | chr5_3:15705081-15705100 | Msa0801620:intron | 30.0% |
| ! | TTCTAAGAAAAACCTTAGCT+TGG | + | chr5_3:15705167-15705186 | Msa0801620:intron | 30.0% |
| ACAATTACTTTGCTAATCCA+AGG | + | chr5_3:15705230-15705249 | Msa0801620:intron | 30.0% | |
| CAATTACTTTGCTAATCCAA+GGG | + | chr5_3:15705231-15705250 | Msa0801620:intron | 30.0% | |
| !!! | TAGAGTGTAAGTTTTAAGCT+TGG | + | chr5_3:15705308-15705327 | Msa0801620:intron | 30.0% |
| CAAAAATCCGGAAGTAATTA+TGG | + | chr5_3:15705426-15705445 | Msa0801620:intron | 30.0% | |
| AAAATCCGGAAGTAATTATG+GGG | + | chr5_3:15705428-15705447 | Msa0801620:intron | 30.0% | |
| AATTACCCCATAATTACTTC+CGG | - | chr5_3:15705436-15705455 | None:intergenic | 30.0% | |
| CTTGCATGTTATCAGTTATT+TGG | + | chr5_3:15705477-15705496 | Msa0801620:intron | 30.0% | |
| TAACCTCAAAAAGATGAGAA+GGG | - | chr5_3:15705545-15705564 | None:intergenic | 30.0% | |
| ATAACCTCAAAAAGATGAGA+AGG | - | chr5_3:15705546-15705565 | None:intergenic | 30.0% | |
| !!! | CATCTTTTTGAGGTTATTTG+TGG | + | chr5_3:15705549-15705568 | Msa0801620:intron | 30.0% |
| AATCTTCATTGATGCTCTTT+CGG | + | chr5_3:15705622-15705641 | Msa0801620:intron | 30.0% | |
| !! | GCATTATCCTTTTGTTTATC+TGG | - | chr5_3:15705822-15705841 | None:intergenic | 30.0% |
| TAACTAAACAGAGTTACTCT+CGG | - | chr5_3:15705970-15705989 | None:intergenic | 30.0% | |
| AAAGACTACAATATCAGAGT+TGG | + | chr5_3:15706120-15706139 | Msa0801620:intron | 30.0% | |
| GATTGCAAAAACCAATTAAC+TGG | + | chr5_3:15706147-15706166 | Msa0801620:intron | 30.0% | |
| CAAAAACCAATTAACTGGAT+CGG | + | chr5_3:15706152-15706171 | Msa0801620:intron | 30.0% | |
| ATTAATAGAAGGAAGGGTTT+CGG | + | chr5_3:15706269-15706288 | Msa0801620:intron | 30.0% | |
| TCCTAACAGGGTAAAAAAAT+GGG | + | chr5_3:15706292-15706311 | Msa0801620:intron | 30.0% | |
| ACACGTTGCAAAACTAAAAT+GGG | + | chr5_3:15706373-15706392 | Msa0801620:intron | 30.0% | |
| CAATGAAGTAACAGAAAGTA+AGG | - | chr5_3:15706535-15706554 | None:intergenic | 30.0% | |
| ! | TACTTTCTGTTACTTCATTG+AGG | + | chr5_3:15706535-15706554 | Msa0801620:intron | 30.0% |
| !! | ATTAACTGATTTTCTGATGC+AGG | + | chr5_3:15706631-15706650 | Msa0801620:intron | 30.0% |
| TTACCAATAAAGATGTGTGT+TGG | - | chr5_3:15706782-15706801 | None:intergenic | 30.0% | |
| AACACACATCTTTATTGGTA+AGG | + | chr5_3:15706781-15706800 | Msa0801620:intron | 30.0% | |
| ! | CTTGTCACAATTTAAAACAC+TGG | + | chr5_3:15707005-15707024 | Msa0801620:CDS | 30.0% |
| !! | ATTTTAGAAATGCTAGGTAC+CGG | - | chr5_3:15707099-15707118 | None:intergenic | 30.0% |
| GATTCTATTGTCTTGATGTT+TGG | + | chr5_3:15707148-15707167 | Msa0801620:intron | 30.0% | |
| !! | TGATGTTTGGTTCTAGATTA+AGG | + | chr5_3:15707161-15707180 | Msa0801620:intron | 30.0% |
| CAGGGCAATAAAAATAAGTT+TGG | - | chr5_3:15707200-15707219 | None:intergenic | 30.0% | |
| ! | TGTCTATTGATGGGTAAAAT+TGG | - | chr5_3:15707444-15707463 | None:intergenic | 30.0% |
| ACTCTACAATGTCTATTGAT+GGG | - | chr5_3:15707453-15707472 | None:intergenic | 30.0% | |
| TACTCTACAATGTCTATTGA+TGG | - | chr5_3:15707454-15707473 | None:intergenic | 30.0% | |
| TCTCATGTTTACAGGTTTAT+CGG | + | chr5_3:15707673-15707692 | Msa0801620:intron | 30.0% | |
| ! | ACTGATTACTGATTGTATAG+AGG | + | chr5_3:15707725-15707744 | Msa0801620:CDS | 30.0% |
| ATTTCAAATTCAGCACCAAT+TGG | - | chr5_3:15707963-15707982 | None:intergenic | 30.0% | |
| ! | TGCTGAATTTGAAATCATCA+AGG | + | chr5_3:15707968-15707987 | Msa0801620:CDS | 30.0% |
| TCATGATATTAACGACTAGA+AGG | + | chr5_3:15708078-15708097 | Msa0801620:three_prime_UTR | 30.0% | |
| AAATGTCACCAAAAAGCAAA+TGG | + | chr5_3:15708103-15708122 | Msa0801620:three_prime_UTR | 30.0% | |
| ! | AACTCTGCTGTGTATTATTT+TGG | + | chr5_3:15708310-15708329 | Msa0801620:three_prime_UTR | 30.0% |
| AAGTTGGAATAGAAAAACGG+CGG | + | chr5_3:15703268-15703287 | Msa0801620:five_prime_UTR | 35.0% | |
| GTAACCGCAAATCTATCTAT+AGG | + | chr5_3:15703307-15703326 | Msa0801620:five_prime_UTR | 35.0% | |
| TCAATTACTTCAGTGTTGTG+AGG | + | chr5_3:15703506-15703525 | Msa0801620:intron | 35.0% | |
| GGCTTCAACTGATATGAATT+TGG | - | chr5_3:15703560-15703579 | None:intergenic | 35.0% | |
| CCAAAATGTTATAGGAGACA+AGG | - | chr5_3:15703738-15703757 | None:intergenic | 35.0% | |
| ! | CCTTGTCTCCTATAACATTT+TGG | + | chr5_3:15703735-15703754 | Msa0801620:CDS | 35.0% |
| TACCTGAGCCAAAATGTTAT+AGG | - | chr5_3:15703746-15703765 | None:intergenic | 35.0% | |
| ! | GCATATTTTACAAGCATGAC+CGG | + | chr5_3:15704524-15704543 | Msa0801620:CDS | 35.0% |
| ATTATAGCTCCGGTAACTAT+AGG | - | chr5_3:15704631-15704650 | None:intergenic | 35.0% | |
| ATAGTTACCGGAGCTATAAT+CGG | + | chr5_3:15704631-15704650 | Msa0801620:intron | 35.0% | |
| !!! | TCAATGTTTTGAAAATGGCG+TGG | + | chr5_3:15704674-15704693 | Msa0801620:intron | 35.0% |
| ATAACTGATGGAACTGCAAA+TGG | - | chr5_3:15704720-15704739 | None:intergenic | 35.0% | |
| CAAAATCAGCTTGTAAGACA+AGG | - | chr5_3:15704817-15704836 | None:intergenic | 35.0% | |
| !! | TGTCTTACAAGCTGATTTTG+TGG | + | chr5_3:15704817-15704836 | Msa0801620:intron | 35.0% |
| !! | GTCTTACAAGCTGATTTTGT+GGG | + | chr5_3:15704818-15704837 | Msa0801620:intron | 35.0% |
| ! | ATCTAAAGTGTGGACAAATG+CGG | - | chr5_3:15704936-15704955 | None:intergenic | 35.0% |
| TAACATATTACGCTTCGGAT+TGG | - | chr5_3:15705032-15705051 | None:intergenic | 35.0% | |
| GATCATATCTTTAGTCAGTG+TGG | - | chr5_3:15705061-15705080 | None:intergenic | 35.0% | |
| ACAATGATCACCTTACAAGT+CGG | + | chr5_3:15705104-15705123 | Msa0801620:intron | 35.0% | |
| !! | AAAGTCAAAACCGACTTGTA+AGG | - | chr5_3:15705117-15705136 | None:intergenic | 35.0% |
| !!! | AAGTCGGTTTTGACTTTTGT+GGG | + | chr5_3:15705120-15705139 | Msa0801620:intron | 35.0% |
| TAAATCAAATATTGGGCCCT+TGG | - | chr5_3:15705250-15705269 | None:intergenic | 35.0% | |
| ! | AAATCCCTTTTCTCTTGTGT+CGG | + | chr5_3:15705277-15705296 | Msa0801620:intron | 35.0% |
| !!! | GTGTAAGTTTTAAGCTTGGA+AGG | + | chr5_3:15705312-15705331 | Msa0801620:intron | 35.0% |
| ATAAGTGCTTCTATGATCAC+AGG | - | chr5_3:15705352-15705371 | None:intergenic | 35.0% | |
| TTATCAGTTATTTGGCATCC+AGG | + | chr5_3:15705485-15705504 | Msa0801620:intron | 35.0% | |
| !! | ATCCTTTTGTTTATCTGGCT+GGG | - | chr5_3:15705817-15705836 | None:intergenic | 35.0% |
| !! | TATCCTTTTGTTTATCTGGC+TGG | - | chr5_3:15705818-15705837 | None:intergenic | 35.0% |
| ! | TTTTGCCGTAGAGAAACAAA+AGG | - | chr5_3:15706071-15706090 | None:intergenic | 35.0% |
| TCTTATCCGATCCAGTTAAT+TGG | - | chr5_3:15706161-15706180 | None:intergenic | 35.0% | |
| GTCCTAACAGGGTAAAAAAA+TGG | + | chr5_3:15706291-15706310 | Msa0801620:intron | 35.0% | |
| !!! | ACCCATTTTTTTACCCTGTT+AGG | - | chr5_3:15706296-15706315 | None:intergenic | 35.0% |
| !! | ATTCACACCTTTGAGATTCA+TGG | + | chr5_3:15706345-15706364 | Msa0801620:intron | 35.0% |
| CACACGTTGCAAAACTAAAA+TGG | + | chr5_3:15706372-15706391 | Msa0801620:intron | 35.0% | |
| CTGGCTGCATTTAAATTCAA+CGG | + | chr5_3:15706730-15706749 | Msa0801620:CDS | 35.0% | |
| TAGCCAACACACATCTTTAT+TGG | + | chr5_3:15706776-15706795 | Msa0801620:CDS | 35.0% | |
| ATGTGTTTGCGTAACTTTAG+TGG | + | chr5_3:15706890-15706909 | Msa0801620:intron | 35.0% | |
| !! | CCACCGTTTTTACAAGAAAA+GGG | - | chr5_3:15707306-15707325 | None:intergenic | 35.0% |
| !! | TCCACCGTTTTTACAAGAAA+AGG | - | chr5_3:15707307-15707326 | None:intergenic | 35.0% |
| ! | CAGTAATCAGTTCTGATGAA+GGG | - | chr5_3:15707716-15707735 | None:intergenic | 35.0% |
| ! | TCAGTAATCAGTTCTGATGA+AGG | - | chr5_3:15707717-15707736 | None:intergenic | 35.0% |
| ! | GGTGTGTAATTTGTAAATGG+TGG | - | chr5_3:15707798-15707817 | None:intergenic | 35.0% |
| ! | CCAGGTGTGTAATTTGTAAA+TGG | - | chr5_3:15707801-15707820 | None:intergenic | 35.0% |
| CCATTTACAAATTACACACC+TGG | + | chr5_3:15707798-15707817 | Msa0801620:CDS | 35.0% | |
| ATATCAACTGCTTCAGAATC+TGG | - | chr5_3:15707897-15707916 | None:intergenic | 35.0% | |
| ! | TCTGAAGCAGTTGATATTGT+TGG | + | chr5_3:15707900-15707919 | Msa0801620:CDS | 35.0% |
| CCAATTGGTAAATGATCACT+TGG | - | chr5_3:15707948-15707967 | None:intergenic | 35.0% | |
| CCAAGTGATCATTTACCAAT+TGG | + | chr5_3:15707945-15707964 | Msa0801620:CDS | 35.0% | |
| AGGGTTTCAAGATTGACAAA+GGG | - | chr5_3:15708042-15708061 | None:intergenic | 35.0% | |
| TAGGGTTTCAAGATTGACAA+AGG | - | chr5_3:15708043-15708062 | None:intergenic | 35.0% | |
| !! | AACCTACACCATTTGCTTTT+TGG | - | chr5_3:15708114-15708133 | None:intergenic | 35.0% |
| TTCAGCTGCAAATTTATCAG+AGG | - | chr5_3:15708185-15708204 | None:intergenic | 35.0% | |
| TAAATACCTAGTTGCGGAGA+GGG | - | chr5_3:15703366-15703385 | None:intergenic | 40.0% | |
| ATAAATACCTAGTTGCGGAG+AGG | - | chr5_3:15703367-15703386 | None:intergenic | 40.0% | |
| !! | AGTTCTGGAATGTATATCGG+CGG | - | chr5_3:15703581-15703600 | None:intergenic | 40.0% |
| CATTCCAGAACTAAACCTGA+TGG | + | chr5_3:15703589-15703608 | Msa0801620:CDS | 40.0% | |
| ! | CTTACCATCAGGTTTAGTTC+TGG | - | chr5_3:15703596-15703615 | None:intergenic | 40.0% |
| ! | ATGCGTTGTTACTTACCATC+AGG | - | chr5_3:15703607-15703626 | None:intergenic | 40.0% |
| !!! | CTCCTATAACATTTTGGCTC+AGG | + | chr5_3:15703741-15703760 | Msa0801620:CDS | 40.0% |
| CCTAAATATTACGTCCTCGT+AGG | - | chr5_3:15703851-15703870 | None:intergenic | 40.0% | |
| CCTACGAGGACGTAATATTT+AGG | + | chr5_3:15703848-15703867 | Msa0801620:intron | 40.0% | |
| ! | TACAGGATTTGAAGCCTTTG+TGG | - | chr5_3:15704009-15704028 | None:intergenic | 40.0% |
| GTAAGTTACTTGAGAGACGA+AGG | - | chr5_3:15704135-15704154 | None:intergenic | 40.0% | |
| ! | CTTTTACAAAGGAAGGATGC+AGG | + | chr5_3:15704441-15704460 | Msa0801620:CDS | 40.0% |
| GAGCTTATGCCTATAGTTAC+CGG | + | chr5_3:15704619-15704638 | Msa0801620:intron | 40.0% | |
| !! | AGCTATAATCGGTGCTAGAT+AGG | + | chr5_3:15704642-15704661 | Msa0801620:intron | 40.0% |
| ! | ATGACAGGACATCTAAAGTG+TGG | - | chr5_3:15704946-15704965 | None:intergenic | 40.0% |
| ACACTTTAGATGTCCTGTCA+TGG | + | chr5_3:15704945-15704964 | Msa0801620:intron | 40.0% | |
| !!! | CAAGTCGGTTTTGACTTTTG+TGG | + | chr5_3:15705119-15705138 | Msa0801620:intron | 40.0% |
| !!! | AGTCGGTTTTGACTTTTGTG+GGG | + | chr5_3:15705121-15705140 | Msa0801620:intron | 40.0% |
| ! | CCTTAGCTTGGATATTGTAC+CGG | + | chr5_3:15705179-15705198 | Msa0801620:intron | 40.0% |
| TATGCCGACACAAGAGAAAA+GGG | - | chr5_3:15705284-15705303 | None:intergenic | 40.0% | |
| ATATGCCGACACAAGAGAAA+AGG | - | chr5_3:15705285-15705304 | None:intergenic | 40.0% | |
| TAAAGAGAACCATAGTTGCC+TGG | - | chr5_3:15705506-15705525 | None:intergenic | 40.0% | |
| ! | TCTCCCTTCTCATCTTTTTG+AGG | + | chr5_3:15705539-15705558 | Msa0801620:intron | 40.0% |
| CCATATGAAGAGTTCTCATC+TGG | - | chr5_3:15705768-15705787 | None:intergenic | 40.0% | |
| CCAGATGAGAACTCTTCATA+TGG | + | chr5_3:15705765-15705784 | Msa0801620:CDS | 40.0% | |
| AACCCAGCCAGATAAACAAA+AGG | + | chr5_3:15705812-15705831 | Msa0801620:CDS | 40.0% | |
| CAATCTGCATTTACCAGCTT+TGG | - | chr5_3:15705847-15705866 | None:intergenic | 40.0% | |
| !! | TGTGTGTTTTTGTGTGTGTG+TGG | - | chr5_3:15705919-15705938 | None:intergenic | 40.0% |
| !! | CTGAGCCTTTTGTTTCTCTA+CGG | + | chr5_3:15706063-15706082 | Msa0801620:intron | 40.0% |
| GTGTATGCCATGAATCTCAA+AGG | - | chr5_3:15706355-15706374 | None:intergenic | 40.0% | |
| ! | TTGCAACATGCACTGTTTTG+TGG | + | chr5_3:15706449-15706468 | Msa0801620:intron | 40.0% |
| ! | TGCAACATGCACTGTTTTGT+GGG | + | chr5_3:15706450-15706469 | Msa0801620:intron | 40.0% |
| TCCTTCCTCAATAGTAGACA+CGG | - | chr5_3:15706501-15706520 | None:intergenic | 40.0% | |
| TTCTGATGCAGGACCTAAAT+TGG | + | chr5_3:15706642-15706661 | Msa0801620:intron | 40.0% | |
| TCTGATGCAGGACCTAAATT+GGG | + | chr5_3:15706643-15706662 | Msa0801620:intron | 40.0% | |
| CGATCTACTGTACCCAATTT+AGG | - | chr5_3:15706658-15706677 | None:intergenic | 40.0% | |
| AAATTGGGTACAGTAGATCG+TGG | + | chr5_3:15706658-15706677 | Msa0801620:CDS | 40.0% | |
| AGACTAAAGCGTGATTGTGT+TGG | + | chr5_3:15706703-15706722 | Msa0801620:CDS | 40.0% | |
| CACCAGCATGAAAGATTTCA+GGG | - | chr5_3:15707218-15707237 | None:intergenic | 40.0% | |
| GAAGATTAGCGCTTACATAG+TGG | + | chr5_3:15707238-15707257 | Msa0801620:intron | 40.0% | |
| ! | CCCTTTTCTTGTAAAAACGG+TGG | + | chr5_3:15707303-15707322 | Msa0801620:intron | 40.0% |
| ! | GGTAAAATTGGTTTAGCCGA+TGG | - | chr5_3:15707432-15707451 | None:intergenic | 40.0% |
| CTGCTTGATCTCATGTTTAC+AGG | + | chr5_3:15707665-15707684 | Msa0801620:intron | 40.0% | |
| GTTTATCGGTATCTCGTATC+AGG | + | chr5_3:15707687-15707706 | Msa0801620:CDS | 40.0% | |
| AGTGTCTATGCTTCTACAAG+AGG | + | chr5_3:15707768-15707787 | Msa0801620:CDS | 40.0% | |
| ! | GATAGCTAACTGGTTTCATG+TGG | - | chr5_3:15707866-15707885 | None:intergenic | 40.0% |
| ! | GAAGCAGTTGATATTGTTGG+TGG | + | chr5_3:15707903-15707922 | Msa0801620:CDS | 40.0% |
| TCACTTGGATGACTCAAGTT+TGG | - | chr5_3:15707933-15707952 | None:intergenic | 40.0% | |
| CACCAAAAAGCAAATGGTGT+AGG | + | chr5_3:15708109-15708128 | Msa0801620:three_prime_UTR | 40.0% | |
| CTATAAGCCTGTAACCTACG+AGG | + | chr5_3:15703834-15703853 | Msa0801620:intron | 45.0% | |
| ATTACGTCCTCGTAGGTTAC+AGG | - | chr5_3:15703844-15703863 | None:intergenic | 45.0% | |
| TGAAACTAGCACGTACACAC+CGG | + | chr5_3:15703874-15703893 | Msa0801620:intron | 45.0% | |
| !! | AAGTGTCGATGGTGCTACAA+TGG | + | chr5_3:15703983-15704002 | Msa0801620:intron | 45.0% |
| AGTTACTTGAGAGACGAAGG+AGG | - | chr5_3:15704132-15704151 | None:intergenic | 45.0% | |
| ! | AGCTGAGTTTTTCTGCCTAC+AGG | + | chr5_3:15704301-15704320 | Msa0801620:CDS | 45.0% |
| ! | AGTGGAGAGAAAAAGCGTGA+TGG | + | chr5_3:15704496-15704515 | Msa0801620:CDS | 45.0% |
| ! | GTGGAGAGAAAAAGCGTGAT+GGG | + | chr5_3:15704497-15704516 | Msa0801620:CDS | 45.0% |
| !! | TCTAGCACCGATTATAGCTC+CGG | - | chr5_3:15704641-15704660 | None:intergenic | 45.0% |
| AAAGTGTGGACAAATGCGGA+TGG | - | chr5_3:15704932-15704951 | None:intergenic | 45.0% | |
| ! | ATGTCCTGTCATGGTCTTGA+AGG | + | chr5_3:15704954-15704973 | Msa0801620:intron | 45.0% |
| ! | TGTCCTGTCATGGTCTTGAA+GGG | + | chr5_3:15704955-15704974 | Msa0801620:intron | 45.0% |
| TCAATGAGGGTGGAATGACA+CGG | - | chr5_3:15704993-15705012 | None:intergenic | 45.0% | |
| TCCAAAGCGTGGATCAATGA+GGG | - | chr5_3:15705006-15705025 | None:intergenic | 45.0% | |
| ATCCAAAGCGTGGATCAATG+AGG | - | chr5_3:15705007-15705026 | None:intergenic | 45.0% | |
| AAGGTGATCATTGTCCAAGC+AGG | - | chr5_3:15705098-15705117 | None:intergenic | 45.0% | |
| CCGGTACAATATCCAAGCTA+AGG | - | chr5_3:15705182-15705201 | None:intergenic | 45.0% | |
| ATTTGGCATCCAGGCAACTA+TGG | + | chr5_3:15705494-15705513 | Msa0801620:intron | 45.0% | |
| CAAGGTAACAGCACAAGGTA+TGG | - | chr5_3:15705680-15705699 | None:intergenic | 45.0% | |
| ACTCTGCACTAAACAGCACA+AGG | - | chr5_3:15705698-15705717 | None:intergenic | 45.0% | |
| GTTTAGTGCAGAGTTGCTCT+TGG | + | chr5_3:15705704-15705723 | Msa0801620:intron | 45.0% | |
| AAGGATAATGCGACCAAAGC+TGG | + | chr5_3:15705831-15705850 | Msa0801620:CDS | 45.0% | |
| AGAGTTACTCTCGGAGTCAA+CGG | - | chr5_3:15705961-15705980 | None:intergenic | 45.0% | |
| ACACACCGTGTCTACTATTG+AGG | + | chr5_3:15706493-15706512 | Msa0801620:intron | 45.0% | |
| ACCGTGTCTACTATTGAGGA+AGG | + | chr5_3:15706497-15706516 | Msa0801620:intron | 45.0% | |
| GTCTACTATTGAGGAAGGAG+TGG | + | chr5_3:15706502-15706521 | Msa0801620:intron | 45.0% | |
| ACTTCATTGAGGCTGCTGTA+TGG | + | chr5_3:15706546-15706565 | Msa0801620:intron | 45.0% | |
| AGTCTCACACGAGGATCATT+GGG | - | chr5_3:15706688-15706707 | None:intergenic | 45.0% | |
| TAGTCTCACACGAGGATCAT+TGG | - | chr5_3:15706689-15706708 | None:intergenic | 45.0% | |
| GCGTGATTGTGTTGGAATTC+TGG | + | chr5_3:15706711-15706730 | Msa0801620:CDS | 45.0% | |
| !! | ATTTTGACATCAGCCCACTC+AGG | - | chr5_3:15706958-15706977 | None:intergenic | 45.0% |
| ATGCAAGCCTGAAGTGATTG+TGG | + | chr5_3:15707044-15707063 | Msa0801620:CDS | 45.0% | |
| TGCCCTGAAATCTTTCATGC+TGG | + | chr5_3:15707213-15707232 | Msa0801620:intron | 45.0% | |
| CCACCAGCATGAAAGATTTC+AGG | - | chr5_3:15707219-15707238 | None:intergenic | 45.0% | |
| CCTGAAATCTTTCATGCTGG+TGG | + | chr5_3:15707216-15707235 | Msa0801620:intron | 45.0% | |
| ATTAGCGCTTACATAGTGGC+TGG | + | chr5_3:15707242-15707261 | Msa0801620:intron | 45.0% | |
| TTAGCGCTTACATAGTGGCT+GGG | + | chr5_3:15707243-15707262 | Msa0801620:intron | 45.0% | |
| CTTACATAGTGGCTGGGAAA+GGG | + | chr5_3:15707249-15707268 | Msa0801620:intron | 45.0% | |
| AATTACACACCTGGCTTCAC+CGG | + | chr5_3:15707807-15707826 | Msa0801620:CDS | 45.0% | |
| ! | ACTGGTTTCATGTGGTCAGA+GGG | - | chr5_3:15707858-15707877 | None:intergenic | 45.0% |
| ! | AACTGGTTTCATGTGGTCAG+AGG | - | chr5_3:15707859-15707878 | None:intergenic | 45.0% |
| !!! | TTTATTTAATTTTTTAATTC+AGG | + | chr5_3:15703700-15703719 | Msa0801620:intron | 5.0% |
| !!! | ATAAATTTTATAAAGATTAT+AGG | - | chr5_3:15705657-15705676 | None:intergenic | 5.0% |
| TGTCAGTGTCAGTGTCGTGT+TGG | + | chr5_3:15703914-15703933 | Msa0801620:intron | 50.0% | |
| !! | TGGTGCTACAATGGCCACAA+AGG | + | chr5_3:15703992-15704011 | Msa0801620:intron | 50.0% |
| GAGACGAAGGAGGTGAGTAT+GGG | - | chr5_3:15704122-15704141 | None:intergenic | 50.0% | |
| AGAGACGAAGGAGGTGAGTA+TGG | - | chr5_3:15704123-15704142 | None:intergenic | 50.0% | |
| AAAGGAAGGATGCAGGAGCT+GGG | + | chr5_3:15704448-15704467 | Msa0801620:CDS | 50.0% | |
| !! | GAGAAAAAGCGTGATGGGTG+TGG | + | chr5_3:15704502-15704521 | Msa0801620:CDS | 50.0% |
| CATCCCTTCAAGACCATGAC+AGG | - | chr5_3:15704961-15704980 | None:intergenic | 50.0% | |
| AAAGCGTGGATCAATGAGGG+TGG | - | chr5_3:15705003-15705022 | None:intergenic | 50.0% | |
| ACCCTCATTGATCCACGCTT+TGG | + | chr5_3:15705002-15705021 | Msa0801620:intron | 50.0% | |
| AGATGAGAAGGGAGAGAGAG+AGG | - | chr5_3:15705534-15705553 | None:intergenic | 50.0% | |
| CAGCACAAGGTAACAGCACA+AGG | - | chr5_3:15705685-15705704 | None:intergenic | 50.0% | |
| TAGTGCAGAGTTGCTCTTGG+AGG | + | chr5_3:15705707-15705726 | Msa0801620:intron | 50.0% | |
| GTTTATCTGGCTGGGTTGTC+TGG | - | chr5_3:15705809-15705828 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr5_3:15705887-15705906 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr5_3:15705886-15705905 | None:intergenic | 50.0% | |
| GAAGGGTTTCGGTCCTAACA+GGG | + | chr5_3:15706280-15706299 | Msa0801620:intron | 50.0% | |
| TCACGCTTTAGTCTCACACG+AGG | - | chr5_3:15706697-15706716 | None:intergenic | 50.0% | |
| TATGTACCAGGGATCCTGAG+TGG | + | chr5_3:15706941-15706960 | Msa0801620:intron | 50.0% | |
| ATGTACCAGGGATCCTGAGT+GGG | + | chr5_3:15706942-15706961 | Msa0801620:intron | 50.0% | |
| AAGCCTGAAGTGATTGTGGC+CGG | + | chr5_3:15707048-15707067 | Msa0801620:CDS | 50.0% | |
| GCTTACATAGTGGCTGGGAA+AGG | + | chr5_3:15707248-15707267 | Msa0801620:intron | 50.0% | |
| CTGGTTTCATGTGGTCAGAG+GGG | - | chr5_3:15707857-15707876 | None:intergenic | 50.0% | |
| GGAAGCTCGAGATAGCTAAC+TGG | - | chr5_3:15707876-15707895 | None:intergenic | 50.0% | |
| TACCTAGTTGCGGAGAGGGA+AGG | - | chr5_3:15703362-15703381 | None:intergenic | 55.0% | |
| CAAAGGAAGGATGCAGGAGC+TGG | + | chr5_3:15704447-15704466 | Msa0801620:CDS | 55.0% | |
| ! | CGGATTGGACATCCAAAGCG+TGG | - | chr5_3:15705017-15705036 | None:intergenic | 55.0% |
| GGAAGGGTTTCGGTCCTAAC+AGG | + | chr5_3:15706279-15706298 | Msa0801620:intron | 55.0% | |
| TGGCTGAGAGTTGAAGTCGC+CGG | - | chr5_3:15707070-15707089 | None:intergenic | 55.0% | |
| CAACTCTCAGCCAGGAGATC+CGG | + | chr5_3:15707077-15707096 | Msa0801620:CDS | 55.0% | |
| !! | ATGCTAGGTACCGGATCTCC+TGG | - | chr5_3:15707090-15707109 | None:intergenic | 55.0% |
| CTAGTTGCGGAGAGGGAAGG+AGG | - | chr5_3:15703359-15703378 | None:intergenic | 60.0% | |
| CTCCTTCCCTCTCCGCAACT+AGG | + | chr5_3:15703357-15703376 | Msa0801620:CDS | 60.0% | |
| ATCAGCCCACTCAGGATCCC+TGG | - | chr5_3:15706950-15706969 | None:intergenic | 60.0% | |
| TCGCCGGCCACAATCACTTC+AGG | - | chr5_3:15707054-15707073 | None:intergenic | 60.0% | |
| GGCGACTTCAACTCTCAGCC+AGG | + | chr5_3:15707069-15707088 | Msa0801620:CDS | 60.0% | |
| TCAAGCGTTCCGGTGAAGCC+AGG | - | chr5_3:15707819-15707838 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 15703266 | 15708333 | 15703266 | ID=Msa0801620;Name=Msa0801620 |
| chr5_3 | mRNA | 15703266 | 15708333 | 15703266 | ID=Msa0801620-mRNA-1;Parent=Msa0801620;Name=Msa0801620-mRNA-1;_AED=0.27;_eAED=0.27;_QI=66|1|1|1|1|1|10|338|389 |
| chr5_3 | exon | 15703266 | 15703378 | 15703266 | ID=Msa0801620-mRNA-1:exon:6534;Parent=Msa0801620-mRNA-1 |
| chr5_3 | exon | 15703519 | 15703610 | 15703519 | ID=Msa0801620-mRNA-1:exon:6535;Parent=Msa0801620-mRNA-1 |
| chr5_3 | exon | 15703722 | 15703762 | 15703722 | ID=Msa0801620-mRNA-1:exon:6536;Parent=Msa0801620-mRNA-1 |
| chr5_3 | exon | 15704096 | 15704145 | 15704096 | ID=Msa0801620-mRNA-1:exon:6537;Parent=Msa0801620-mRNA-1 |
| chr5_3 | exon | 15704253 | 15704322 | 15704253 | ID=Msa0801620-mRNA-1:exon:6538;Parent=Msa0801620-mRNA-1 |
| chr5_3 | exon | 15704421 | 15704545 | 15704421 | ID=Msa0801620-mRNA-1:exon:6539;Parent=Msa0801620-mRNA-1 |
| chr5_3 | exon | 15705710 | 15705852 | 15705710 | ID=Msa0801620-mRNA-1:exon:6540;Parent=Msa0801620-mRNA-1 |
| chr5_3 | exon | 15706653 | 15706797 | 15706653 | ID=Msa0801620-mRNA-1:exon:6541;Parent=Msa0801620-mRNA-1 |
| chr5_3 | exon | 15706951 | 15707098 | 15706951 | ID=Msa0801620-mRNA-1:exon:6542;Parent=Msa0801620-mRNA-1 |
| chr5_3 | exon | 15707687 | 15708333 | 15707687 | ID=Msa0801620-mRNA-1:exon:6543;Parent=Msa0801620-mRNA-1 |
| chr5_3 | five_prime_UTR | 15703266 | 15703331 | 15703266 | ID=Msa0801620-mRNA-1:five_prime_utr;Parent=Msa0801620-mRNA-1 |
| chr5_3 | CDS | 15703332 | 15703378 | 15703332 | ID=Msa0801620-mRNA-1:cds;Parent=Msa0801620-mRNA-1 |
| chr5_3 | CDS | 15703519 | 15703610 | 15703519 | ID=Msa0801620-mRNA-1:cds;Parent=Msa0801620-mRNA-1 |
| chr5_3 | CDS | 15703722 | 15703762 | 15703722 | ID=Msa0801620-mRNA-1:cds;Parent=Msa0801620-mRNA-1 |
| chr5_3 | CDS | 15704096 | 15704145 | 15704096 | ID=Msa0801620-mRNA-1:cds;Parent=Msa0801620-mRNA-1 |
| chr5_3 | CDS | 15704253 | 15704322 | 15704253 | ID=Msa0801620-mRNA-1:cds;Parent=Msa0801620-mRNA-1 |
| chr5_3 | CDS | 15704421 | 15704545 | 15704421 | ID=Msa0801620-mRNA-1:cds;Parent=Msa0801620-mRNA-1 |
| chr5_3 | CDS | 15705710 | 15705852 | 15705710 | ID=Msa0801620-mRNA-1:cds;Parent=Msa0801620-mRNA-1 |
| chr5_3 | CDS | 15706653 | 15706797 | 15706653 | ID=Msa0801620-mRNA-1:cds;Parent=Msa0801620-mRNA-1 |
| chr5_3 | CDS | 15706951 | 15707098 | 15706951 | ID=Msa0801620-mRNA-1:cds;Parent=Msa0801620-mRNA-1 |
| chr5_3 | CDS | 15707687 | 15707995 | 15707687 | ID=Msa0801620-mRNA-1:cds;Parent=Msa0801620-mRNA-1 |
| chr5_3 | three_prime_UTR | 15707996 | 15708333 | 15707996 | ID=Msa0801620-mRNA-1:three_prime_utr;Parent=Msa0801620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
