AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0801650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 138 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAAGCACCTGTTATTTA+TGG 0.167139 5_3:+15769251 Msa0801650:CDS
CACATCAGCAATGGTTAAAA+AGG 0.169647 5_3:+15770371 Msa0801650:three_prime_UTR
CAAAATTATCAAGTAATTAT+TGG 0.175992 5_3:+15770440 Msa0801650:three_prime_UTR
TCTTCTAACCAGACTCTATC+TGG 0.204790 5_3:+15764460 None:intergenic
GAAATAGCTCCATTTATATA+AGG 0.225284 5_3:+15770306 Msa0801650:three_prime_UTR
AATCAAAACCCTTATATAAA+TGG 0.239371 5_3:-15770315 None:intergenic
AAAATTTCTCGGGCTTTATA+TGG 0.250180 5_3:+15769923 Msa0801650:three_prime_UTR
CCATCTTTGTACCACCTTTA+GGG 0.253436 5_3:-15770578 None:intergenic
TATCTGGGTGAGTGGCTTCC+AGG 0.263239 5_3:+15765809 Msa0801650:five_prime_UTR
CGCTGGATACCGCCGTAAGC+TGG 0.269843 5_3:-15764917 None:intergenic
GTGAACCTCTAGGATATATC+TGG 0.272319 5_3:+15765793 Msa0801650:intron
GACGCGAACCTTCAAGTTTC+CGG 0.274564 5_3:-15764875 None:intergenic
ACCATCTTTGTACCACCTTT+AGG 0.275965 5_3:-15770579 None:intergenic
AGAGCTACTCGTCAAATTTC+AGG 0.278349 5_3:-15769284 None:intergenic
AATGAAGATAGATCATATTT+AGG 0.298260 5_3:-15764643 None:intergenic
TAATAACATGGCTCATACTA+TGG 0.301736 5_3:-15764503 None:intergenic
GCAGATCACCTGGTCTTAAA+TGG 0.311454 5_3:+15770128 Msa0801650:three_prime_UTR
TTACATATCTTGTATAGAAT+TGG 0.314853 5_3:+15769720 Msa0801650:three_prime_UTR
TTGTATGGTACTTACAGTTT+AGG 0.316623 5_3:-15765985 None:intergenic
GTTTCCGGTTGGTGGGGATT+AGG 0.322209 5_3:-15764860 None:intergenic
TTGTAAGCTTGGAAACATAT+TGG 0.334850 5_3:+15765834 Msa0801650:five_prime_UTR
GAATGACACAATGGACAAAA+TGG 0.334957 5_3:-15765905 None:intergenic
AATAAATAATTAAAATTTCT+CGG 0.342425 5_3:+15769912 Msa0801650:three_prime_UTR
ATTACATAAAGGAGAGAATA+TGG 0.343599 5_3:+15769216 Msa0801650:CDS
AGTACTTCCATTAAATTGTC+AGG 0.350337 5_3:-15766190 None:intergenic
TGGTTCTTTCTGCTGCTACT+TGG 0.353667 5_3:-15764811 None:intergenic
GGCTCATACTATGGCCCAAT+TGG 0.359677 5_3:-15764494 None:intergenic
CATGCCAGATCAGATTGTTT+TGG 0.376117 5_3:+15766132 Msa0801650:five_prime_UTR
CAAGATACTGCCATTGAACT+TGG 0.379589 5_3:+15766409 Msa0801650:CDS
AGAAAGCACCTGTTATTTAT+GGG 0.379944 5_3:+15769252 Msa0801650:CDS
AAATAGCTCCATTTATATAA+GGG 0.383955 5_3:+15770307 Msa0801650:three_prime_UTR
GACCGGTGCGTCTCTGCCGC+TGG 0.389164 5_3:-15764934 None:intergenic
GCTTTCTTCCCATAAATAAC+AGG 0.391981 5_3:-15769260 None:intergenic
CTGGGCTAGAATGAGCCAAT+TGG 0.393429 5_3:+15764479 Msa0801650:five_prime_UTR
GCTTCCAGGGTTTGTAAGCT+TGG 0.401518 5_3:+15765823 Msa0801650:five_prime_UTR
ACCTTCAAGTTTCCGGTTGG+TGG 0.409910 5_3:-15764868 None:intergenic
ATAAATAATTAAAATTTCTC+GGG 0.419506 5_3:+15769913 Msa0801650:three_prime_UTR
TTCAGCTGGATGGCATGATA+AGG 0.419758 5_3:+15769849 Msa0801650:three_prime_UTR
TAATCTGGCTTAACATAGAA+AGG 0.421828 5_3:+15770002 Msa0801650:three_prime_UTR
GTGTGTGTGGCAGGAGGATA+TGG 0.427061 5_3:+15765935 Msa0801650:five_prime_UTR
CCATCATTATTTCTAAGAAT+AGG 0.428755 5_3:-15770189 None:intergenic
GATAACAAAGGATTACATAA+AGG 0.436486 5_3:+15769205 Msa0801650:CDS
GGCTTTATATGGAGAAGGTA+AGG 0.443686 5_3:+15769934 Msa0801650:three_prime_UTR
TCAGCTGGATGGCATGATAA+GGG 0.445078 5_3:+15769850 Msa0801650:three_prime_UTR
CCTTCAAGTTTCCGGTTGGT+GGG 0.448359 5_3:-15764867 None:intergenic
CGCACCTAATCCCCACCAAC+CGG 0.459271 5_3:+15764856 Msa0801650:five_prime_UTR
TTCTTTCTGCTGCTACTTGG+AGG 0.460359 5_3:-15764808 None:intergenic
GCAAGTGGTGAACTCTAAAC+AGG 0.462787 5_3:-15769308 None:intergenic
TAACCATTGCTGATGTGGTA+TGG 0.463307 5_3:-15770365 None:intergenic
GCTTTGAAAGTCCCAGCTTA+CGG 0.464321 5_3:+15764905 Msa0801650:five_prime_UTR
CCTATTCTTAGAAATAATGA+TGG 0.465042 5_3:+15770189 Msa0801650:three_prime_UTR
AAGGAGAGAATATGGCATAA+AGG 0.466216 5_3:+15769224 Msa0801650:CDS
TGGGCTAGAATGAGCCAATT+GGG 0.466453 5_3:+15764480 Msa0801650:five_prime_UTR
TACAATGATATAGGAGATTG+TGG 0.467972 5_3:+15769178 Msa0801650:intron
AGTAGATGAAAGAGAGATTG+TGG 0.468683 5_3:-15770538 None:intergenic
AATAATGATGGGTTATTAAG+CGG 0.473078 5_3:+15770201 Msa0801650:three_prime_UTR
TGATCTAAAATTGATGATAC+AGG 0.475870 5_3:-15769788 None:intergenic
CCCACCAACCGGAAACTTGA+AGG 0.477774 5_3:+15764867 Msa0801650:five_prime_UTR
ATCTGAAGATGTAATGATAG+TGG 0.480096 5_3:-15764777 None:intergenic
TAATTCATTTCCAAGTTCAA+TGG 0.482603 5_3:-15766419 None:intergenic
ATCTGGGTGAGTGGCTTCCA+GGG 0.485071 5_3:+15765810 Msa0801650:five_prime_UTR
CTTCAAGTTTCCGGTTGGTG+GGG 0.486413 5_3:-15764866 None:intergenic
AATGCTATTGAATATACAAA+TGG 0.489437 5_3:+15769668 Msa0801650:three_prime_UTR
TATTCGTGATGCTCAAGGCT+TGG 0.490197 5_3:-15764831 None:intergenic
TAGTGAGAAAGTGTTTCGTT+TGG 0.492808 5_3:-15764680 None:intergenic
AAACTGCTAGCAAACTATGA+AGG 0.493697 5_3:+15769824 Msa0801650:three_prime_UTR
CGCTGAATAATGTCTTCCTC+AGG 0.496613 5_3:+15765046 Msa0801650:five_prime_UTR
GCGGCAGAGGGCAGAAGGTG+TGG 0.498337 5_3:-15770061 None:intergenic
AGAAGGCGGCAGAGGGCAGA+AGG 0.499716 5_3:-15770066 None:intergenic
AACCATTGCTGATGTGGTAT+GGG 0.500296 5_3:-15770364 None:intergenic
TCTACCAAAACAATCTGATC+TGG 0.501716 5_3:-15766136 None:intergenic
GCTGGATACCGCCGTAAGCT+GGG 0.503736 5_3:-15764916 None:intergenic
CAAAGAGGCAAGAAATTACA+TGG 0.507736 5_3:+15769643 Msa0801650:intron
TCATGCCATCTCGCTTTGCT+AGG 0.511900 5_3:+15765875 Msa0801650:five_prime_UTR
GTTCACCACTTGCATGATCA+AGG 0.514280 5_3:+15769318 Msa0801650:three_prime_UTR
GGTCGGGAAAGATGCTGTCC+AGG 0.517739 5_3:+15764953 Msa0801650:five_prime_UTR
AAGCAACTGTTTCGCTGATG+TGG 0.519623 5_3:-15770282 None:intergenic
ATTCTAGCCCAGATAGAGTC+TGG 0.519890 5_3:-15764468 None:intergenic
TCTCTCTCTTCTATCCCTAA+AGG 0.520462 5_3:+15770564 Msa0801650:three_prime_UTR
GGTGAGAAGTGCAGATCACC+TGG 0.524126 5_3:+15770118 Msa0801650:three_prime_UTR
GGATTGTCAGAAGGCGGCAG+AGG 0.525146 5_3:-15770074 None:intergenic
CTTAACATGCAACATCATCC+TGG 0.527083 5_3:-15764971 None:intergenic
GCGATTATTCGTGATGCTCA+AGG 0.527097 5_3:-15764836 None:intergenic
TGCATGTTAAGATTCAGATC+TGG 0.534302 5_3:+15764983 Msa0801650:five_prime_UTR
GTCCCAATGAGAAAAGTTGT+TGG 0.539840 5_3:+15769745 Msa0801650:three_prime_UTR
TCTCGGGCTTTATATGGAGA+AGG 0.541439 5_3:+15769929 Msa0801650:three_prime_UTR
CGAAGATGCCCATGCCACAT+GGG 0.543117 5_3:-15770499 None:intergenic
CTATTCTTAGAAATAATGAT+GGG 0.545280 5_3:+15770190 Msa0801650:three_prime_UTR
ACGAAGATGCCCATGCCACA+TGG 0.549271 5_3:-15770500 None:intergenic
GATTGTCAGAAGGCGGCAGA+GGG 0.550966 5_3:-15770073 None:intergenic
CTCTAGGAAATGTAATAACA+TGG 0.553824 5_3:-15764515 None:intergenic
AAAAGGGTGTATAGAAAGAG+TGG 0.553979 5_3:+15770388 Msa0801650:three_prime_UTR
CGAACCTTCAAGTTTCCGGT+TGG 0.555151 5_3:-15764871 None:intergenic
TGATTTGGCCATTTAAGACC+AGG 0.558051 5_3:-15770136 None:intergenic
TGATAAGGGTTCAAGTAGGA+TGG 0.559261 5_3:+15769864 Msa0801650:three_prime_UTR
ATCCAGCGGCAGAGACGCAC+CGG 0.560526 5_3:+15764932 Msa0801650:five_prime_UTR
AACTGCTAGCAAACTATGAA+GGG 0.561604 5_3:+15769825 Msa0801650:three_prime_UTR
CAAAATGCCATTGCAAGTTG+CGG 0.562316 5_3:+15764561 Msa0801650:five_prime_UTR
AAACTATGAAGGGTTTCAGC+TGG 0.563201 5_3:+15769835 Msa0801650:three_prime_UTR
CTTCTAACCAGACTCTATCT+GGG 0.564783 5_3:+15764461 None:intergenic
ATAATGATGGGTTATTAAGC+GGG 0.567133 5_3:+15770202 Msa0801650:three_prime_UTR
ATGCAATCCGCAACTTGCAA+TGG 0.571590 5_3:-15764568 None:intergenic
TATGAAGGGTTTCAGCTGGA+TGG 0.571906 5_3:+15769839 Msa0801650:three_prime_UTR
GTTTCCAAGCTTACAAACCC+TGG 0.573801 5_3:-15765827 None:intergenic
GTACTTCCATTAAATTGTCA+GGG 0.580022 5_3:-15766189 None:intergenic
CTCTCTTCTATCCCTAAAGG+TGG 0.588934 5_3:+15770567 Msa0801650:three_prime_UTR
TGAGACAAAGTTCAAGAGGG+TGG 0.589004 5_3:+15766351 Msa0801650:CDS
AGCGGCAGAGACGCACCGGT+CGG 0.589019 5_3:+15764936 Msa0801650:five_prime_UTR
TGCCCATACCACATCAGCAA+TGG 0.589254 5_3:+15770362 Msa0801650:three_prime_UTR
ATAATGAGACAAAGTTCAAG+AGG 0.589640 5_3:+15766347 Msa0801650:CDS
TGGACAGCATCTTTCCCGAC+CGG 0.591526 5_3:-15764951 None:intergenic
GAGACAAAGTTCAAGAGGGT+GGG 0.600020 5_3:+15766352 Msa0801650:CDS
TGAACCTCTAGGATATATCT+GGG 0.608940 5_3:+15765794 Msa0801650:intron
CATAGAAAGGCTTTATACGA+GGG 0.610134 5_3:+15770015 Msa0801650:three_prime_UTR
TCATTCATGATGTGTGTGTG+TGG 0.610190 5_3:+15765922 Msa0801650:five_prime_UTR
TTAATGGAAGTACTTTCATG+AGG 0.616108 5_3:+15766199 Msa0801650:five_prime_UTR
CTAGGATATATCTGGGTGAG+TGG 0.616847 5_3:+15765801 Msa0801650:intron
AGCCTGTGTGGATTGTCAGA+AGG 0.620100 5_3:-15770083 None:intergenic
ATCTTCCTAGCAAAGCGAGA+TGG 0.622229 5_3:-15765880 None:intergenic
GCTTTATATGGAGAAGGTAA+GGG 0.623958 5_3:+15769935 Msa0801650:three_prime_UTR
ACACAGGCTGATCATCCACT+TGG 0.630161 5_3:+15770097 Msa0801650:three_prime_UTR
GAAGATGCCCATGCCACATG+GGG 0.630848 5_3:-15770498 None:intergenic
CGCCTTCTGACAATCCACAC+AGG 0.642397 5_3:+15770081 Msa0801650:three_prime_UTR
CTGTGTGGATTGTCAGAAGG+CGG 0.647153 5_3:-15770080 None:intergenic
GATTGTGGTAAAGATAACAA+AGG 0.647801 5_3:+15769193 Msa0801650:CDS
GCTGCTACTTGGAGGACGCG+AGG 0.647862 5_3:-15764800 None:intergenic
ACATAGAAAGGCTTTATACG+AGG 0.656319 5_3:+15770014 Msa0801650:three_prime_UTR
TCTAAAATTGATGATACAGG+TGG 0.658257 5_3:-15769785 None:intergenic
TAATGAGACAAAGTTCAAGA+GGG 0.659889 5_3:+15766348 Msa0801650:CDS
TATCTTGATAGCTACTCGCA+AGG 0.663358 5_3:-15766393 None:intergenic
GGCATGATAAGGGTTCAAGT+AGG 0.663612 5_3:+15769860 Msa0801650:three_prime_UTR
GATTACCTTGATCATGCAAG+TGG 0.664617 5_3:-15769323 None:intergenic
ACACATCATGAATGACACAA+TGG 0.669594 5_3:-15765914 None:intergenic
GATCTGCACTTCTCACCAAG+TGG 0.671647 5_3:-15770112 None:intergenic
AAGTGGATGATCAGCCTGTG+TGG 0.676233 5_3:-15770095 None:intergenic
AAACAATCTGATCTGGCATG+TGG 0.676765 5_3:-15766129 None:intergenic
TTGAAAGTCCCAGCTTACGG+CGG 0.681091 5_3:+15764908 Msa0801650:five_prime_UTR
AAGATGCCCATGCCACATGG+GGG 0.751057 5_3:-15770497 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTATTATTAATTTAAAAG+AGG - chr5_3:15765152-15765171 None:intergenic 10.0%
!!! AGTTTAAAATTTATTTTGAA+AGG - chr5_3:15769547-15769566 None:intergenic 10.0%
!! ATAAATAATTAAAATTTCTC+GGG + chr5_3:15769913-15769932 Msa0801650:three_prime_UTR 10.0%
!!! AATATTTTTAATTCTTGATT+TGG - chr5_3:15770154-15770173 None:intergenic 10.0%
!!! TTTGTTTAAAGTTTTTAATA+GGG - chr5_3:15770233-15770252 None:intergenic 10.0%
!!! TTTTGTTTAAAGTTTTTAAT+AGG - chr5_3:15770234-15770253 None:intergenic 10.0%
!! ACTACAATATATAATAGAAA+GGG + chr5_3:15765393-15765412 Msa0801650:intron 15.0%
!!! GAATTTTATACTTAACTAAT+TGG + chr5_3:15765767-15765786 Msa0801650:intron 15.0%
!! ATGACTATTAAAATATTGTA+TGG - chr5_3:15766003-15766022 None:intergenic 15.0%
!! ATGTCATATTTATATACAAA+TGG - chr5_3:15766064-15766083 None:intergenic 15.0%
!!! TTTTGTTTTTTTTTTTGATG+TGG + chr5_3:15766527-15766546 Msa0801650:intron 15.0%
!!! TTTGTTTTTTTTTTTGATGT+GGG + chr5_3:15766528-15766547 Msa0801650:intron 15.0%
!!! TTTTATCAATTGAGATTTTT+TGG + chr5_3:15766719-15766738 Msa0801650:intron 15.0%
!!! TTTTGATTTGTTTTGATATA+TGG + chr5_3:15766794-15766813 Msa0801650:intron 15.0%
!! TCTTAATCTATAAAAATTTG+CGG + chr5_3:15767027-15767046 Msa0801650:intron 15.0%
!!! TATTATTTTTAGCTTGAATA+TGG + chr5_3:15767311-15767330 Msa0801650:intron 15.0%
!! ATTATTAAGAGATAAAATAG+AGG + chr5_3:15767509-15767528 Msa0801650:intron 15.0%
!!! ACTTAAAAAAATGAAAGTAT+TGG - chr5_3:15767873-15767892 None:intergenic 15.0%
!! TATAGTAAAAATTTCATTGT+AGG + chr5_3:15767977-15767996 Msa0801650:intron 15.0%
!!! TTATGAATAAAGTATTTAAG+TGG + chr5_3:15768107-15768126 Msa0801650:intron 15.0%
!! TGAAATTTAAATATGATCTA+TGG - chr5_3:15768811-15768830 None:intergenic 15.0%
!!! GATTACATTTTTGTTTTTTA+CGG + chr5_3:15769972-15769991 Msa0801650:three_prime_UTR 15.0%
!!! ATTACATTTTTGTTTTTTAC+GGG + chr5_3:15769973-15769992 Msa0801650:three_prime_UTR 15.0%
!!! ATAATTTTGTTACGTTATTT+AGG - chr5_3:15770429-15770448 None:intergenic 15.0%
!! CAAAATTATCAAGTAATTAT+TGG + chr5_3:15770440-15770459 Msa0801650:three_prime_UTR 15.0%
!! AATGAAGATAGATCATATTT+AGG - chr5_3:15764646-15764665 None:intergenic 20.0%
!! TTGCCAAATATTATAAACAA+CGG + chr5_3:15765105-15765124 Msa0801650:intron 20.0%
!! CACTACAATATATAATAGAA+AGG + chr5_3:15765392-15765411 Msa0801650:intron 20.0%
!! ATATAATAGAAAGGGAAAAA+AGG + chr5_3:15765401-15765420 Msa0801650:intron 20.0%
!! AATCTGTAGAATGAAAATAA+TGG + chr5_3:15765630-15765649 Msa0801650:intron 20.0%
!!! GTGTTATTTTCAATTACTTT+TGG + chr5_3:15766235-15766254 Msa0801650:intron 20.0%
!! ACAAAATTTAGAAATACTCA+TGG - chr5_3:15766284-15766303 None:intergenic 20.0%
!! GAGAAAAAAACTTAATATGA+GGG - chr5_3:15766469-15766488 None:intergenic 20.0%
!! AGAGAAAAAAACTTAATATG+AGG - chr5_3:15766470-15766489 None:intergenic 20.0%
!! ATGCAAAAAAGAAAAGTAAA+AGG - chr5_3:15766657-15766676 None:intergenic 20.0%
!! TATTACAAAGATAAGTAAGA+TGG + chr5_3:15766892-15766911 Msa0801650:intron 20.0%
!! ATCGTTTAAATCATAATTTC+TGG + chr5_3:15766979-15766998 Msa0801650:intron 20.0%
!! CTTAATCTATAAAAATTTGC+GGG + chr5_3:15767028-15767047 Msa0801650:intron 20.0%
!! TGTTTAGATAAACAAAATAC+TGG + chr5_3:15767209-15767228 Msa0801650:intron 20.0%
!!! TATGGTTTTTGATTGTTTTA+TGG + chr5_3:15767329-15767348 Msa0801650:intron 20.0%
!!! TTAAGGTATAACATCTTTTT+TGG - chr5_3:15767660-15767679 None:intergenic 20.0%
!! AGAAAATGAAGATGTTAAAT+AGG + chr5_3:15767812-15767831 Msa0801650:intron 20.0%
!! AATTAATCAAAATCCAAGTT+AGG - chr5_3:15768350-15768369 None:intergenic 20.0%
!!! AGTTTAGAATCATATGTTAA+TGG + chr5_3:15768476-15768495 Msa0801650:intron 20.0%
!!! AAAATTTTCTATGTAACCTT+TGG + chr5_3:15768509-15768528 Msa0801650:intron 20.0%
!! TCACTAAAAATATACCAAAT+TGG - chr5_3:15768761-15768780 None:intergenic 20.0%
!! TTACTACCAATAAACAATTT+GGG - chr5_3:15769002-15769021 None:intergenic 20.0%
!! ATTACTACCAATAAACAATT+TGG - chr5_3:15769003-15769022 None:intergenic 20.0%
!!! CTGAAATTTTACAATGATAT+AGG + chr5_3:15769169-15769188 Msa0801650:intron 20.0%
!!! TTTTAATTTTTATGCAACCA+AGG - chr5_3:15769492-15769511 None:intergenic 20.0%
!! AATGCTATTGAATATACAAA+TGG + chr5_3:15769668-15769687 Msa0801650:three_prime_UTR 20.0%
!! TTACATATCTTGTATAGAAT+TGG + chr5_3:15769720-15769739 Msa0801650:three_prime_UTR 20.0%
!!! TTACATTTTTGTTTTTTACG+GGG + chr5_3:15769974-15769993 Msa0801650:three_prime_UTR 20.0%
!! CTATTCTTAGAAATAATGAT+GGG + chr5_3:15770190-15770209 Msa0801650:three_prime_UTR 20.0%
!! AAATAGCTCCATTTATATAA+GGG + chr5_3:15770307-15770326 Msa0801650:three_prime_UTR 20.0%
!! AATCAAAACCCTTATATAAA+TGG - chr5_3:15770318-15770337 None:intergenic 20.0%
!!! AGAAAAAATGACTTTTGAAG+TGG - chr5_3:15764707-15764726 None:intergenic 25.0%
! CTTCCGTTGTTTATAATATT+TGG - chr5_3:15765111-15765130 None:intergenic 25.0%
!! ATCAATCTATGAGTGTTATT+GGG + chr5_3:15765361-15765380 Msa0801650:intron 25.0%
! AAAGTAATGATGTCAAACTT+TGG + chr5_3:15765445-15765464 Msa0801650:intron 25.0%
! TATAACTTCTGGTATGATTT+AGG + chr5_3:15765485-15765504 Msa0801650:intron 25.0%
! AGTAAAACTAGCAAATCATA+AGG - chr5_3:15765531-15765550 None:intergenic 25.0%
!!! TTACTGACTTACTTGTATTT+TGG + chr5_3:15765546-15765565 Msa0801650:intron 25.0%
!!! CTTGTATTTTGGTTTGTAAT+TGG + chr5_3:15765557-15765576 Msa0801650:intron 25.0%
! TTTGTAATTGGATATTTGAG+AGG + chr5_3:15765569-15765588 Msa0801650:intron 25.0%
! TGTAGAATGAAAATAATGGT+AGG + chr5_3:15765634-15765653 Msa0801650:intron 25.0%
! CTTTATGCTTGATTCAAATT+AGG + chr5_3:15765728-15765747 Msa0801650:intron 25.0%
! TCAAATTAGGTTATGTAGTT+AGG + chr5_3:15765741-15765760 Msa0801650:intron 25.0%
! CAAATTAGGTTATGTAGTTA+GGG + chr5_3:15765742-15765761 Msa0801650:intron 25.0%
! TAATTCATTTCCAAGTTCAA+TGG - chr5_3:15766422-15766441 None:intergenic 25.0%
! ATTCCTTTGTAAATTTCAGT+TGG + chr5_3:15766590-15766609 Msa0801650:intron 25.0%
! TTCCTTTGTAAATTTCAGTT+GGG + chr5_3:15766591-15766610 Msa0801650:intron 25.0%
! AAAAGGTTTGACATGAAAAA+TGG - chr5_3:15766640-15766659 None:intergenic 25.0%
! TCTCTAAATTGACAAGTTTA+AGG - chr5_3:15767677-15767696 None:intergenic 25.0%
! TTAAACTTGTCAATTTAGAG+AGG + chr5_3:15767676-15767695 Msa0801650:intron 25.0%
! TATCATATGCCTTCATAATA+CGG + chr5_3:15767702-15767721 Msa0801650:intron 25.0%
! ATCTCATATCTAATCTTTCA+TGG + chr5_3:15767923-15767942 Msa0801650:intron 25.0%
! ATGAAAGGATTCATAATCTT+TGG + chr5_3:15768201-15768220 Msa0801650:intron 25.0%
!! TATGTAACCTTTGGTTTATT+TGG + chr5_3:15768518-15768537 Msa0801650:intron 25.0%
!!! AGGTAATAAAAGTACCAATT+TGG + chr5_3:15768744-15768763 Msa0801650:intron 25.0%
! GATAACAAAGGATTACATAA+AGG + chr5_3:15769205-15769224 Msa0801650:CDS 25.0%
! ATTACATAAAGGAGAGAATA+TGG + chr5_3:15769216-15769235 Msa0801650:CDS 25.0%
! AAAGGATCATATGATATGTT+GGG - chr5_3:15769358-15769377 None:intergenic 25.0%
! AAAAGGATCATATGATATGT+TGG - chr5_3:15769359-15769378 None:intergenic 25.0%
! AGTAAATTGAATTGGACAAA+AGG - chr5_3:15769376-15769395 None:intergenic 25.0%
! AGTTCTACATAATTGAAGTT+TGG - chr5_3:15769448-15769467 None:intergenic 25.0%
!!! TTCTAATTGTTGTGTTGTTT+TGG + chr5_3:15769578-15769597 Msa0801650:intron 25.0%
!! TGATCTAAAATTGATGATAC+AGG - chr5_3:15769791-15769810 None:intergenic 25.0%
!!! CCATCATTATTTCTAAGAAT+AGG - chr5_3:15770192-15770211 None:intergenic 25.0%
! CCTATTCTTAGAAATAATGA+TGG + chr5_3:15770189-15770208 Msa0801650:three_prime_UTR 25.0%
!!! AATAATGATGGGTTATTAAG+CGG + chr5_3:15770201-15770220 Msa0801650:three_prime_UTR 25.0%
!! TTAAAGTTTTTAATAGGGAG+TGG - chr5_3:15770228-15770247 None:intergenic 25.0%
! GAAATAGCTCCATTTATATA+AGG + chr5_3:15770306-15770325 Msa0801650:three_prime_UTR 25.0%
TAATAACATGGCTCATACTA+TGG - chr5_3:15764506-15764525 None:intergenic 30.0%
! CTCTAGGAAATGTAATAACA+TGG - chr5_3:15764518-15764537 None:intergenic 30.0%
!!! TCAAGTTAGCTTTTATCTCT+AGG - chr5_3:15764534-15764553 None:intergenic 30.0%
!!! TTTTCTGAAACCACATTCAA+CGG + chr5_3:15764721-15764740 Msa0801650:five_prime_UTR 30.0%
ATCTGAAGATGTAATGATAG+TGG - chr5_3:15764780-15764799 None:intergenic 30.0%
! GTAATCAGAGCATTTATGAA+GGG - chr5_3:15765081-15765100 None:intergenic 30.0%
TAACACTCATAGATTGATCA+AGG - chr5_3:15765359-15765378 None:intergenic 30.0%
GATCAATCTATGAGTGTTAT+TGG + chr5_3:15765360-15765379 Msa0801650:intron 30.0%
! ACTGACTTAGATATAACTTC+TGG + chr5_3:15765474-15765493 Msa0801650:intron 30.0%
AGAATGAAAATAATGGTAGG+TGG + chr5_3:15765637-15765656 Msa0801650:intron 30.0%
TTGTAAGCTTGGAAACATAT+TGG + chr5_3:15765834-15765853 Msa0801650:five_prime_UTR 30.0%
TTGTATGGTACTTACAGTTT+AGG - chr5_3:15765988-15766007 None:intergenic 30.0%
GTCAAAAAACTCTTCATGAA+TGG - chr5_3:15766170-15766189 None:intergenic 30.0%
! TTTTGACCCTGACAATTTAA+TGG + chr5_3:15766183-15766202 Msa0801650:five_prime_UTR 30.0%
GTACTTCCATTAAATTGTCA+GGG - chr5_3:15766192-15766211 None:intergenic 30.0%
AGTACTTCCATTAAATTGTC+AGG - chr5_3:15766193-15766212 None:intergenic 30.0%
!! TTAATGGAAGTACTTTCATG+AGG + chr5_3:15766199-15766218 Msa0801650:five_prime_UTR 30.0%
! TGTTTTGTGAAACTTTTAGC+AGG + chr5_3:15766301-15766320 Msa0801650:intron 30.0%
ATAATGAGACAAAGTTCAAG+AGG + chr5_3:15766347-15766366 Msa0801650:CDS 30.0%
TAATGAGACAAAGTTCAAGA+GGG + chr5_3:15766348-15766367 Msa0801650:CDS 30.0%
!!! TTTTTTTGATGTGGGAGAAA+TGG + chr5_3:15766536-15766555 Msa0801650:intron 30.0%
! AAATGGTTACTTTGAACACA+AGG - chr5_3:15766623-15766642 None:intergenic 30.0%
! TAATTTCTGGAGACATCTTA+TGG + chr5_3:15766992-15767011 Msa0801650:intron 30.0%
TTACAGTGATACTGTGTATT+TGG - chr5_3:15767151-15767170 None:intergenic 30.0%
!! TTGATTGTTTTATGGAGAAC+AGG + chr5_3:15767337-15767356 Msa0801650:intron 30.0%
TAGTGCAAAACAGAGTTATA+TGG - chr5_3:15767429-15767448 None:intergenic 30.0%
AACTCTCAATGTAGAAAAGA+TGG + chr5_3:15767533-15767552 Msa0801650:intron 30.0%
!! TCTTAGGTGATTTGGTTATT+CGG + chr5_3:15767566-15767585 Msa0801650:intron 30.0%
ATCATATGCCTTCATAATAC+GGG + chr5_3:15767703-15767722 Msa0801650:intron 30.0%
TTCCATCTGCATAAATGAAT+AGG + chr5_3:15767727-15767746 Msa0801650:intron 30.0%
ATCCTATTCATTTATGCAGA+TGG - chr5_3:15767732-15767751 None:intergenic 30.0%
! GTGGAAGTTTTCTTCTTTAT+TGG + chr5_3:15768126-15768145 Msa0801650:intron 30.0%
AATGATCAAGAAGAGATGAA+AGG + chr5_3:15768186-15768205 Msa0801650:intron 30.0%
! AGGATTCATAATCTTTGGAA+TGG + chr5_3:15768206-15768225 Msa0801650:intron 30.0%
! GCTTTTATACTGCACTATAA+AGG - chr5_3:15768625-15768644 None:intergenic 30.0%
AGTGCAGTATAAAAGCTTAT+TGG + chr5_3:15768629-15768648 Msa0801650:intron 30.0%
TAAACTGCATAACTTACATG+AGG + chr5_3:15768724-15768743 Msa0801650:intron 30.0%
TTTCAGTTTGAATCTTGTGT+AGG + chr5_3:15768901-15768920 Msa0801650:intron 30.0%
TTCAGTTTGAATCTTGTGTA+GGG + chr5_3:15768902-15768921 Msa0801650:intron 30.0%
CTAATGATTAAGTAATCAGC+AGG - chr5_3:15768962-15768981 None:intergenic 30.0%
AAGTTGCCCAAATTGTTTAT+TGG + chr5_3:15768993-15769012 Msa0801650:intron 30.0%
GAAACACAATGCAAAACATT+TGG + chr5_3:15769052-15769071 Msa0801650:intron 30.0%
TACAATGATATAGGAGATTG+TGG + chr5_3:15769178-15769197 Msa0801650:intron 30.0%
GATTGTGGTAAAGATAACAA+AGG + chr5_3:15769193-15769212 Msa0801650:CDS 30.0%
!! AAGAAAGCACCTGTTATTTA+TGG + chr5_3:15769251-15769270 Msa0801650:CDS 30.0%
!! AGAAAGCACCTGTTATTTAT+GGG + chr5_3:15769252-15769271 Msa0801650:CDS 30.0%
TCCAATTCAATTTACTGCTA+TGG + chr5_3:15769380-15769399 Msa0801650:intron 30.0%
ACCATAGCAGTAAATTGAAT+TGG - chr5_3:15769384-15769403 None:intergenic 30.0%
GTTAAACTACATTTACACCT+TGG + chr5_3:15769472-15769491 Msa0801650:intron 30.0%
! AACCAACAACTTTTCTCATT+GGG - chr5_3:15769750-15769769 None:intergenic 30.0%
! AAACCAACAACTTTTCTCAT+TGG - chr5_3:15769751-15769770 None:intergenic 30.0%
! TCTAAAATTGATGATACAGG+TGG - chr5_3:15769788-15769807 None:intergenic 30.0%
! AAAATTTCTCGGGCTTTATA+TGG + chr5_3:15769923-15769942 Msa0801650:three_prime_UTR 30.0%
!!! ATTTTTGTTTTTTACGGGGA+AGG + chr5_3:15769978-15769997 Msa0801650:three_prime_UTR 30.0%
! TAATCTGGCTTAACATAGAA+AGG + chr5_3:15770002-15770021 Msa0801650:three_prime_UTR 30.0%
!! ATAATGATGGGTTATTAAGC+GGG + chr5_3:15770202-15770221 Msa0801650:three_prime_UTR 30.0%
ACATCAGCAATGGTTAAAAA+GGG + chr5_3:15770372-15770391 Msa0801650:three_prime_UTR 30.0%
!! TAGTGAGAAAGTGTTTCGTT+TGG - chr5_3:15764683-15764702 None:intergenic 35.0%
TGCATGTTAAGATTCAGATC+TGG + chr5_3:15764983-15765002 Msa0801650:five_prime_UTR 35.0%
! CGTAATCAGAGCATTTATGA+AGG - chr5_3:15765082-15765101 None:intergenic 35.0%
! CAGTCCTTGAAATCTGAAAT+CGG + chr5_3:15765181-15765200 Msa0801650:intron 35.0%
! ACAACCGATTTCAGATTTCA+AGG - chr5_3:15765188-15765207 None:intergenic 35.0%
GACTCTTAACCTCAAAATCT+TGG - chr5_3:15765212-15765231 None:intergenic 35.0%
!! TGAACCTCTAGGATATATCT+GGG + chr5_3:15765794-15765813 Msa0801650:intron 35.0%
GAATGACACAATGGACAAAA+TGG - chr5_3:15765908-15765927 None:intergenic 35.0%
ACACATCATGAATGACACAA+TGG - chr5_3:15765917-15765936 None:intergenic 35.0%
TCTACCAAAACAATCTGATC+TGG - chr5_3:15766139-15766158 None:intergenic 35.0%
CACCCAACTGAAATTTACAA+AGG - chr5_3:15766596-15766615 None:intergenic 35.0%
! TGAGAAACTGTCAAAGTGTT+TGG + chr5_3:15767111-15767130 Msa0801650:intron 35.0%
! ACTGTCAAAGTGTTTGGTTA+TGG + chr5_3:15767117-15767136 Msa0801650:intron 35.0%
! CTGTCAAAGTGTTTGGTTAT+GGG + chr5_3:15767118-15767137 Msa0801650:intron 35.0%
AATGAGAGAGAACTCAAAAG+AGG - chr5_3:15767239-15767258 None:intergenic 35.0%
!! AGATGGTAGAGTATTGTCTT+AGG + chr5_3:15767550-15767569 Msa0801650:intron 35.0%
! GAGTATTGTCTTAGGTGATT+TGG + chr5_3:15767558-15767577 Msa0801650:intron 35.0%
!! CTTAGGTGATTTGGTTATTC+GGG + chr5_3:15767567-15767586 Msa0801650:intron 35.0%
!! TTAGGTGATTTGGTTATTCG+GGG + chr5_3:15767568-15767587 Msa0801650:intron 35.0%
AGATACTGTTAACTCTCTCT+TGG - chr5_3:15767635-15767654 None:intergenic 35.0%
AGAAAGAGCAAGTCATTTCA+TGG + chr5_3:15767896-15767915 Msa0801650:intron 35.0%
TCTTTATTGGACAGATTGCA+TGG + chr5_3:15768139-15768158 Msa0801650:intron 35.0%
TTGACCACAAATGTCATAGT+TGG + chr5_3:15768239-15768258 Msa0801650:intron 35.0%
TGACCACAAATGTCATAGTT+GGG + chr5_3:15768240-15768259 Msa0801650:intron 35.0%
ATACCCAACTATGACATTTG+TGG - chr5_3:15768246-15768265 None:intergenic 35.0%
ATCAAAATCCAAGTTAGGCA+AGG - chr5_3:15768345-15768364 None:intergenic 35.0%
GCATAGAGATAAAAGACATC+AGG - chr5_3:15768547-15768566 None:intergenic 35.0%
CTATAAAGGACTTTGTAGGA+AGG - chr5_3:15768611-15768630 None:intergenic 35.0%
TGCACTATAAAGGACTTTGT+AGG - chr5_3:15768615-15768634 None:intergenic 35.0%
! AAATGTGAGTATTGTGCGTT+GGG - chr5_3:15769102-15769121 None:intergenic 35.0%
!! TAAGAAGGCACTTCTAAAGA+GGG - chr5_3:15769138-15769157 None:intergenic 35.0%
TCAGCATTGTATCAGTAAGA+AGG - chr5_3:15769153-15769172 None:intergenic 35.0%
AAGGAGAGAATATGGCATAA+AGG + chr5_3:15769224-15769243 Msa0801650:CDS 35.0%
GCTTTCTTCCCATAAATAAC+AGG - chr5_3:15769263-15769282 None:intergenic 35.0%
CAAAGAGGCAAGAAATTACA+TGG + chr5_3:15769643-15769662 Msa0801650:intron 35.0%
AAACTGCTAGCAAACTATGA+AGG + chr5_3:15769824-15769843 Msa0801650:three_prime_UTR 35.0%
AACTGCTAGCAAACTATGAA+GGG + chr5_3:15769825-15769844 Msa0801650:three_prime_UTR 35.0%
GCTTTATATGGAGAAGGTAA+GGG + chr5_3:15769935-15769954 Msa0801650:three_prime_UTR 35.0%
! ACATAGAAAGGCTTTATACG+AGG + chr5_3:15770014-15770033 Msa0801650:three_prime_UTR 35.0%
! CATAGAAAGGCTTTATACGA+GGG + chr5_3:15770015-15770034 Msa0801650:three_prime_UTR 35.0%
! CTTTTTAACCATTGCTGATG+TGG - chr5_3:15770373-15770392 None:intergenic 35.0%
CACATCAGCAATGGTTAAAA+AGG + chr5_3:15770371-15770390 Msa0801650:three_prime_UTR 35.0%
! AAAAGGGTGTATAGAAAGAG+TGG + chr5_3:15770388-15770407 Msa0801650:three_prime_UTR 35.0%
!! AAAGAGAGATTGTGGTTTTG+AGG - chr5_3:15770533-15770552 None:intergenic 35.0%
AGTAGATGAAAGAGAGATTG+TGG - chr5_3:15770541-15770560 None:intergenic 35.0%
CAAAATGCCATTGCAAGTTG+CGG + chr5_3:15764561-15764580 Msa0801650:five_prime_UTR 40.0%
CAAAATGCCATTGCAAGTTG+CGG + chr5_3:15764561-15764580 Msa0801650:five_prime_UTR 40.0%
CTTAACATGCAACATCATCC+TGG - chr5_3:15764974-15764993 None:intergenic 40.0%
CGATTTCAGATTTCAAGGAC+TGG - chr5_3:15765183-15765202 None:intergenic 40.0%
! TCGGTTGTTCCAAGATTTTG+AGG + chr5_3:15765200-15765219 Msa0801650:intron 40.0%
!! TAATTGGCTTGTGAACCTCT+AGG + chr5_3:15765783-15765802 Msa0801650:intron 40.0%
!! GTGAACCTCTAGGATATATC+TGG + chr5_3:15765793-15765812 Msa0801650:intron 40.0%
TCATTCATGATGTGTGTGTG+TGG + chr5_3:15765922-15765941 Msa0801650:five_prime_UTR 40.0%
AAACAATCTGATCTGGCATG+TGG - chr5_3:15766132-15766151 None:intergenic 40.0%
! CATGCCAGATCAGATTGTTT+TGG + chr5_3:15766132-15766151 Msa0801650:five_prime_UTR 40.0%
! TATCTTGATAGCTACTCGCA+AGG - chr5_3:15766396-15766415 None:intergenic 40.0%
CAAGATACTGCCATTGAACT+TGG + chr5_3:15766409-15766428 Msa0801650:CDS 40.0%
! ACTGTACTTTGTTTCGCTCT+TGG + chr5_3:15766855-15766874 Msa0801650:intron 40.0%
! AAAGTGTTTAGATAGCAGCC+AGG - chr5_3:15767092-15767111 None:intergenic 40.0%
!! TAGGTGATTTGGTTATTCGG+GGG + chr5_3:15767569-15767588 Msa0801650:intron 40.0%
TAATCTTTCATGGTACCTGC+AGG + chr5_3:15767933-15767952 Msa0801650:intron 40.0%
TGTTCAAACCTTGCCTAACT+TGG + chr5_3:15768334-15768353 Msa0801650:intron 40.0%
!!! GCTCTAAGATTTTGCAAGCT+TGG + chr5_3:15768431-15768450 Msa0801650:intron 40.0%
CAGGCATCCAAATAAACCAA+AGG - chr5_3:15768528-15768547 None:intergenic 40.0%
TAGTTGAGGGAGAACTTGAA+AGG + chr5_3:15768670-15768689 Msa0801650:intron 40.0%
GGGAGAACTTGAAAGGAAAA+TGG + chr5_3:15768677-15768696 Msa0801650:intron 40.0%
TATGCAGTTTAGCACTCTCA+TGG - chr5_3:15768715-15768734 None:intergenic 40.0%
TTGAATCTTGTGTAGGGACT+TGG + chr5_3:15768908-15768927 Msa0801650:intron 40.0%
TGAATCTTGTGTAGGGACTT+GGG + chr5_3:15768909-15768928 Msa0801650:intron 40.0%
AGTAATCAGCAGGATTGAGT+GGG - chr5_3:15768952-15768971 None:intergenic 40.0%
AAGTAATCAGCAGGATTGAG+TGG - chr5_3:15768953-15768972 None:intergenic 40.0%
! AATGTGAGTATTGTGCGTTG+GGG - chr5_3:15769101-15769120 None:intergenic 40.0%
! GAAATGTGAGTATTGTGCGT+TGG - chr5_3:15769103-15769122 None:intergenic 40.0%
!! GTAAGAAGGCACTTCTAAAG+AGG - chr5_3:15769139-15769158 None:intergenic 40.0%
AGAGCTACTCGTCAAATTTC+AGG - chr5_3:15769287-15769306 None:intergenic 40.0%
GATTACCTTGATCATGCAAG+TGG - chr5_3:15769326-15769345 None:intergenic 40.0%
! GAAGTTTGGAAGCATGTTTG+TGG - chr5_3:15769434-15769453 None:intergenic 40.0%
!! GTAACTTCAACTTGCTGCTA+TGG + chr5_3:15769602-15769621 Msa0801650:intron 40.0%
GTCCCAATGAGAAAAGTTGT+TGG + chr5_3:15769745-15769764 Msa0801650:three_prime_UTR 40.0%
AAACTATGAAGGGTTTCAGC+TGG + chr5_3:15769835-15769854 Msa0801650:three_prime_UTR 40.0%
TGATAAGGGTTCAAGTAGGA+TGG + chr5_3:15769864-15769883 Msa0801650:three_prime_UTR 40.0%
! GGCTTTATATGGAGAAGGTA+AGG + chr5_3:15769934-15769953 Msa0801650:three_prime_UTR 40.0%
! TTTTACGGGGAAGGTTAATC+TGG + chr5_3:15769987-15770006 Msa0801650:three_prime_UTR 40.0%
! TGATTTGGCCATTTAAGACC+AGG - chr5_3:15770139-15770158 None:intergenic 40.0%
AACCATTGCTGATGTGGTAT+GGG - chr5_3:15770367-15770386 None:intergenic 40.0%
TAACCATTGCTGATGTGGTA+TGG - chr5_3:15770368-15770387 None:intergenic 40.0%
TCTCTCTCTTCTATCCCTAA+AGG + chr5_3:15770564-15770583 Msa0801650:three_prime_UTR 40.0%
ATTCTAGCCCAGATAGAGTC+TGG - chr5_3:15764471-15764490 None:intergenic 45.0%
! TGGGCTAGAATGAGCCAATT+GGG + chr5_3:15764480-15764499 Msa0801650:five_prime_UTR 45.0%
ATGCAATCCGCAACTTGCAA+TGG - chr5_3:15764571-15764590 None:intergenic 45.0%
! CTTCGTTTTGCCGTTGAATG+TGG - chr5_3:15764734-15764753 None:intergenic 45.0%
! TTCTTTCTGCTGCTACTTGG+AGG - chr5_3:15764811-15764830 None:intergenic 45.0%
TGGTTCTTTCTGCTGCTACT+TGG - chr5_3:15764814-15764833 None:intergenic 45.0%
TATTCGTGATGCTCAAGGCT+TGG - chr5_3:15764834-15764853 None:intergenic 45.0%
GCGATTATTCGTGATGCTCA+AGG - chr5_3:15764839-15764858 None:intergenic 45.0%
!! GCTTTGAAAGTCCCAGCTTA+CGG + chr5_3:15764905-15764924 Msa0801650:five_prime_UTR 45.0%
CGCTGAATAATGTCTTCCTC+AGG + chr5_3:15765046-15765065 Msa0801650:five_prime_UTR 45.0%
TGAAGGGAAATTCGTACCTG+AGG - chr5_3:15765065-15765084 None:intergenic 45.0%
AGAGTCGAACCAATGCTTAC+AGG + chr5_3:15765226-15765245 Msa0801650:intron 45.0%
GACTCTCTTCCTGTAAGCAT+TGG - chr5_3:15765238-15765257 None:intergenic 45.0%
CTCACCCAGATATATCCTAG+AGG - chr5_3:15765801-15765820 None:intergenic 45.0%
CTAGGATATATCTGGGTGAG+TGG + chr5_3:15765801-15765820 Msa0801650:intron 45.0%
GTTTCCAAGCTTACAAACCC+TGG - chr5_3:15765830-15765849 None:intergenic 45.0%
ATCTTCCTAGCAAAGCGAGA+TGG - chr5_3:15765883-15765902 None:intergenic 45.0%
TGGCATGTGGTAATCAGATC+TGG - chr5_3:15766119-15766138 None:intergenic 45.0%
TGAGACAAAGTTCAAGAGGG+TGG + chr5_3:15766351-15766370 Msa0801650:CDS 45.0%
GAGACAAAGTTCAAGAGGGT+GGG + chr5_3:15766352-15766371 Msa0801650:CDS 45.0%
GATGGAAGCCCGTATTATGA+AGG - chr5_3:15767714-15767733 None:intergenic 45.0%
CAATTGCTTGATTGTCCTGC+AGG - chr5_3:15767951-15767970 None:intergenic 45.0%
CATGCACTGCTTGTAGTTGA+GGG + chr5_3:15768657-15768676 Msa0801650:intron 45.0%
GCAAGTGGTGAACTCTAAAC+AGG - chr5_3:15769311-15769330 None:intergenic 45.0%
GTTCACCACTTGCATGATCA+AGG + chr5_3:15769318-15769337 Msa0801650:three_prime_UTR 45.0%
CTTGCTGCTATGGAATCCTA+CGG + chr5_3:15769612-15769631 Msa0801650:intron 45.0%
TGCTATGGAATCCTACGGAT+TGG + chr5_3:15769617-15769636 Msa0801650:intron 45.0%
TATGAAGGGTTTCAGCTGGA+TGG + chr5_3:15769839-15769858 Msa0801650:three_prime_UTR 45.0%
TTCAGCTGGATGGCATGATA+AGG + chr5_3:15769849-15769868 Msa0801650:three_prime_UTR 45.0%
TCAGCTGGATGGCATGATAA+GGG + chr5_3:15769850-15769869 Msa0801650:three_prime_UTR 45.0%
GGCATGATAAGGGTTCAAGT+AGG + chr5_3:15769860-15769879 Msa0801650:three_prime_UTR 45.0%
! TCTCGGGCTTTATATGGAGA+AGG + chr5_3:15769929-15769948 Msa0801650:three_prime_UTR 45.0%
!! GCAGATCACCTGGTCTTAAA+TGG + chr5_3:15770128-15770147 Msa0801650:three_prime_UTR 45.0%
! TTCGCTGATGTGGCATTTTG+TGG - chr5_3:15770275-15770294 None:intergenic 45.0%
AAGCAACTGTTTCGCTGATG+TGG - chr5_3:15770285-15770304 None:intergenic 45.0%
!! AATAAATAATTAAAATTTCT+CGG + chr5_3:15769912-15769931 Msa0801650:three_prime_UTR 5.0%
!! AAGAATTAAAAATATTAATT+AGG + chr5_3:15770158-15770177 Msa0801650:three_prime_UTR 5.0%
! CTGGGCTAGAATGAGCCAAT+TGG + chr5_3:15764479-15764498 Msa0801650:five_prime_UTR 50.0%
GGCTCATACTATGGCCCAAT+TGG - chr5_3:15764497-15764516 None:intergenic 50.0%
ATGCCATTGCAAGTTGCGGA+TGG + chr5_3:15764565-15764584 Msa0801650:five_prime_UTR 50.0%
ATGCCATCCGCAACTTGCAA+TGG - chr5_3:15764612-15764631 None:intergenic 50.0%
! CTTCAAGTTTCCGGTTGGTG+GGG - chr5_3:15764869-15764888 None:intergenic 50.0%
! CCTTCAAGTTTCCGGTTGGT+GGG - chr5_3:15764870-15764889 None:intergenic 50.0%
! ACCTTCAAGTTTCCGGTTGG+TGG - chr5_3:15764871-15764890 None:intergenic 50.0%
! CGAACCTTCAAGTTTCCGGT+TGG - chr5_3:15764874-15764893 None:intergenic 50.0%
! GACGCGAACCTTCAAGTTTC+CGG - chr5_3:15764878-15764897 None:intergenic 50.0%
TTGAAAGTCCCAGCTTACGG+CGG + chr5_3:15764908-15764927 Msa0801650:five_prime_UTR 50.0%
GCTTCCAGGGTTTGTAAGCT+TGG + chr5_3:15765823-15765842 Msa0801650:five_prime_UTR 50.0%
TCATGCCATCTCGCTTTGCT+AGG + chr5_3:15765875-15765894 Msa0801650:five_prime_UTR 50.0%
TCATGATGTGTGTGTGTGGC+AGG + chr5_3:15765926-15765945 Msa0801650:five_prime_UTR 50.0%
!! CAAGAGGGTGGGTGTTTTTG+TGG + chr5_3:15766363-15766382 Msa0801650:CDS 50.0%
TGCTTGCTTACATGCTTGCC+TGG + chr5_3:15767071-15767090 Msa0801650:intron 50.0%
!! GTGATTTGGTTATTCGGGGG+AGG + chr5_3:15767572-15767591 Msa0801650:intron 50.0%
ATTCGGGGGAGGAAACTTGT+AGG + chr5_3:15767583-15767602 Msa0801650:intron 50.0%
CCTCAACTACAAGCAGTGCA+TGG - chr5_3:15768659-15768678 None:intergenic 50.0%
CCATGCACTGCTTGTAGTTG+AGG + chr5_3:15768656-15768675 Msa0801650:intron 50.0%
CCTCTTTGTCTCCAATCCGT+AGG - chr5_3:15769631-15769650 None:intergenic 50.0%
!! CCTACGGATTGGAGACAAAG+AGG + chr5_3:15769628-15769647 Msa0801650:intron 50.0%
! CTGTGTGGATTGTCAGAAGG+CGG - chr5_3:15770083-15770102 None:intergenic 50.0%
! AGCCTGTGTGGATTGTCAGA+AGG - chr5_3:15770086-15770105 None:intergenic 50.0%
AAGTGGATGATCAGCCTGTG+TGG - chr5_3:15770098-15770117 None:intergenic 50.0%
ACACAGGCTGATCATCCACT+TGG + chr5_3:15770097-15770116 Msa0801650:three_prime_UTR 50.0%
GATCTGCACTTCTCACCAAG+TGG - chr5_3:15770115-15770134 None:intergenic 50.0%
TGCCCATACCACATCAGCAA+TGG + chr5_3:15770362-15770381 Msa0801650:three_prime_UTR 50.0%
!! GTTTCCGGTTGGTGGGGATT+AGG - chr5_3:15764863-15764882 None:intergenic 55.0%
CCCACCAACCGGAAACTTGA+AGG + chr5_3:15764867-15764886 Msa0801650:five_prime_UTR 55.0%
TGGACAGCATCTTTCCCGAC+CGG - chr5_3:15764954-15764973 None:intergenic 55.0%
TATCTGGGTGAGTGGCTTCC+AGG + chr5_3:15765809-15765828 Msa0801650:five_prime_UTR 55.0%
ATCTGGGTGAGTGGCTTCCA+GGG + chr5_3:15765810-15765829 Msa0801650:five_prime_UTR 55.0%
TGATGTGTGTGTGTGGCAGG+AGG + chr5_3:15765929-15765948 Msa0801650:five_prime_UTR 55.0%
GTGTGTGTGGCAGGAGGATA+TGG + chr5_3:15765935-15765954 Msa0801650:five_prime_UTR 55.0%
GATTGTCAGAAGGCGGCAGA+GGG - chr5_3:15770076-15770095 None:intergenic 55.0%
CGCCTTCTGACAATCCACAC+AGG + chr5_3:15770081-15770100 Msa0801650:three_prime_UTR 55.0%
! GGTGAGAAGTGCAGATCACC+TGG + chr5_3:15770118-15770137 Msa0801650:three_prime_UTR 55.0%
! CACATGGGGGTGTACATGAG+TGG - chr5_3:15770487-15770506 None:intergenic 55.0%
CACTCATGTACACCCCCATG+TGG + chr5_3:15770485-15770504 Msa0801650:three_prime_UTR 55.0%
ATGTACACCCCCATGTGGCA+TGG + chr5_3:15770490-15770509 Msa0801650:three_prime_UTR 55.0%
TGTACACCCCCATGTGGCAT+GGG + chr5_3:15770491-15770510 Msa0801650:three_prime_UTR 55.0%
AAGATGCCCATGCCACATGG+GGG - chr5_3:15770500-15770519 None:intergenic 55.0%
GAAGATGCCCATGCCACATG+GGG - chr5_3:15770501-15770520 None:intergenic 55.0%
CGAAGATGCCCATGCCACAT+GGG - chr5_3:15770502-15770521 None:intergenic 55.0%
ACGAAGATGCCCATGCCACA+TGG - chr5_3:15770503-15770522 None:intergenic 55.0%
CGCACCTAATCCCCACCAAC+CGG + chr5_3:15764856-15764875 Msa0801650:five_prime_UTR 60.0%
GCTGGATACCGCCGTAAGCT+GGG - chr5_3:15764919-15764938 None:intergenic 60.0%
CAGCTTACGGCGGTATCCAG+CGG + chr5_3:15764918-15764937 Msa0801650:five_prime_UTR 60.0%
GGTCGGGAAAGATGCTGTCC+AGG + chr5_3:15764953-15764972 Msa0801650:five_prime_UTR 60.0%
GGATTGTCAGAAGGCGGCAG+AGG - chr5_3:15770077-15770096 None:intergenic 60.0%
! GCTGCTACTTGGAGGACGCG+AGG - chr5_3:15764803-15764822 None:intergenic 65.0%
CGCTGGATACCGCCGTAAGC+TGG - chr5_3:15764920-15764939 None:intergenic 65.0%
ATCCAGCGGCAGAGACGCAC+CGG + chr5_3:15764932-15764951 Msa0801650:five_prime_UTR 65.0%
AGAAGGCGGCAGAGGGCAGA+AGG - chr5_3:15770069-15770088 None:intergenic 65.0%
! AGCGGCAGAGACGCACCGGT+CGG + chr5_3:15764936-15764955 Msa0801650:five_prime_UTR 70.0%
GCGGCAGAGGGCAGAAGGTG+TGG - chr5_3:15770064-15770083 None:intergenic 70.0%
GACCGGTGCGTCTCTGCCGC+TGG - chr5_3:15764937-15764956 None:intergenic 75.0%
! GCGGCAGAGACGCACCGGTC+GGG + chr5_3:15764937-15764956 Msa0801650:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 15764468 15770587 15764468 ID=Msa0801650;Name=Msa0801650
chr5_3 mRNA 15764468 15770587 15764468 ID=Msa0801650-mRNA-1;Parent=Msa0801650;Name=Msa0801650-mRNA-1;_AED=0.28;_eAED=0.28;_QI=865|0.83|1|1|0|0|7|984|69
chr5_3 exon 15764468 15764590 15764468 ID=Msa0801650-mRNA-1:exon:6544;Parent=Msa0801650-mRNA-1
chr5_3 exon 15764632 15765067 15764632 ID=Msa0801650-mRNA-1:exon:6545;Parent=Msa0801650-mRNA-1
chr5_3 exon 15765805 15765992 15765805 ID=Msa0801650-mRNA-1:exon:6546;Parent=Msa0801650-mRNA-1
chr5_3 exon 15766120 15766220 15766120 ID=Msa0801650-mRNA-1:exon:6547;Parent=Msa0801650-mRNA-1
chr5_3 exon 15766320 15766441 15766320 ID=Msa0801650-mRNA-1:exon:6548;Parent=Msa0801650-mRNA-1
chr5_3 exon 15769191 15769339 15769191 ID=Msa0801650-mRNA-1:exon:6549;Parent=Msa0801650-mRNA-1
chr5_3 exon 15769648 15770587 15769648 ID=Msa0801650-mRNA-1:exon:6550;Parent=Msa0801650-mRNA-1
chr5_3 five_prime_UTR 15764468 15764590 15764468 ID=Msa0801650-mRNA-1:five_prime_utr;Parent=Msa0801650-mRNA-1
chr5_3 five_prime_UTR 15764632 15765067 15764632 ID=Msa0801650-mRNA-1:five_prime_utr;Parent=Msa0801650-mRNA-1
chr5_3 five_prime_UTR 15765805 15765992 15765805 ID=Msa0801650-mRNA-1:five_prime_utr;Parent=Msa0801650-mRNA-1
chr5_3 five_prime_UTR 15766120 15766220 15766120 ID=Msa0801650-mRNA-1:five_prime_utr;Parent=Msa0801650-mRNA-1
chr5_3 five_prime_UTR 15766320 15766336 15766320 ID=Msa0801650-mRNA-1:five_prime_utr;Parent=Msa0801650-mRNA-1
chr5_3 CDS 15766337 15766441 15766337 ID=Msa0801650-mRNA-1:cds;Parent=Msa0801650-mRNA-1
chr5_3 CDS 15769191 15769295 15769191 ID=Msa0801650-mRNA-1:cds;Parent=Msa0801650-mRNA-1
chr5_3 three_prime_UTR 15769296 15769339 15769296 ID=Msa0801650-mRNA-1:three_prime_utr;Parent=Msa0801650-mRNA-1
chr5_3 three_prime_UTR 15769648 15770587 15769648 ID=Msa0801650-mRNA-1:three_prime_utr;Parent=Msa0801650-mRNA-1
Gene Sequence

>Msa0801650

ATGAAGACAAATAATGAGACAAAGTTCAAGAGGGTGGGTGTTTTTGTGGAAGTAGTCCTTGCGAGTAGCTATCAAGATACTGCCATTGAACTTGGAAATGAATTAGAGATTGTGGTAAAGATAACAAAGGATTACATAAAGGAGAGAATATGGCATAAAGGAGAGAAGAAAGCACCTGTTATTTATGGGAAGAAAGCACCTGAAATTTGA
Protein sequence

>Msa0801650

MKTNNETKFKRVGVFVEVVLASSYQDTAIELGNELEIVVKITKDYIKERIWHKGEKKAPVIYGKKAPEI*