AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1348480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 95 sgRNAs with CRISPR-Local

Find 490 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAAGGACCTGTTATTTA+TGG 0.167139 tig0010469:+18500 Msa1348480:CDS
CTTTATGCTTGATTCAAATT+AGG 0.202072 tig0010469:+10505 None:intergenic
GAAATAGCTCCATTTATATA+AGG 0.225284 tig0010469:+19555 Msa1348480:three_prime_UTR
TCAAATTAGGTTATGTAGTT+AGG 0.230730 tig0010469:+10518 Msa1348480:five_prime_UTR
AATCAAAACCCTTATATAAA+TGG 0.237418 tig0010469:-19564 None:intergenic
AAAATTTCTCGGGCTTTATA+TGG 0.250180 tig0010469:+19172 Msa1348480:three_prime_UTR
GTGAACCTCTAGGATATATA+TGG 0.255741 tig0010469:+10570 Msa1348480:five_prime_UTR
AGAGCTACTCATCAAATTTC+AGG 0.270993 tig0010469:-18533 None:intergenic
AAAATGCAGTAAATATTTAT+AGG 0.311082 tig0010469:-19826 None:intergenic
GCAGATCACCTGGTCTTAAA+TGG 0.311454 tig0010469:+19377 Msa1348480:three_prime_UTR
TTACATATCTTGTATAGAAT+TGG 0.314853 tig0010469:+18969 Msa1348480:three_prime_UTR
TTGTATGGTACTTACAGTTT+AGG 0.316623 tig0010469:-10762 None:intergenic
TATATGGGTGAGTGGCTTCC+AGG 0.322103 tig0010469:+10586 Msa1348480:five_prime_UTR
CTAGCTTATACTCGATTAAA+TGG 0.322745 tig0010469:+19624 Msa1348480:three_prime_UTR
TTGTAAGCTTGGAAACATAT+TGG 0.334850 tig0010469:+10611 Msa1348480:five_prime_UTR
GAATGACACAATGGACAAAA+TGG 0.334957 tig0010469:-10682 None:intergenic
AATAAATAATTAAAATTTCT+CGG 0.342425 tig0010469:+19161 Msa1348480:three_prime_UTR
ATTACATCAAGGAGAGAATA+TGG 0.352657 tig0010469:+18465 Msa1348480:CDS
CATGCCAGATCAGATTGTTT+TGG 0.376117 tig0010469:+10909 Msa1348480:five_prime_UTR
CAAGATACTGCCATTGAACT+TGG 0.379589 tig0010469:+11186 Msa1348480:CDS
AGAAAGGACCTGTTATTTAT+GGG 0.379944 tig0010469:+18501 Msa1348480:CDS
AGTACTTCCATTAAATTGTC+GGG 0.382795 tig0010469:-10967 None:intergenic
AAATAGCTCCATTTATATAA+GGG 0.383955 tig0010469:+19556 Msa1348480:three_prime_UTR
GCTTTCTTCCCATAAATAAC+AGG 0.391981 tig0010469:-18509 None:intergenic
CAAATTAGGTTATGTAGTTA+GGG 0.400366 tig0010469:+10519 Msa1348480:five_prime_UTR
GCTTCCAGGGTTTGTAAGCT+TGG 0.401518 tig0010469:+10600 Msa1348480:five_prime_UTR
ATAAATAATTAAAATTTCTC+GGG 0.419506 tig0010469:+19162 Msa1348480:three_prime_UTR
TTCAGCTGGATGGCATGATA+AGG 0.419758 tig0010469:+19098 Msa1348480:three_prime_UTR
CCATCATTATTTCTAAGAAT+AGG 0.419876 tig0010469:-19438 None:intergenic
TAATCTGGCTTAACATAGAA+AGG 0.421828 tig0010469:+19251 Msa1348480:three_prime_UTR
GTGTGTGTGGCAGGAGGATA+TGG 0.427061 tig0010469:+10712 Msa1348480:five_prime_UTR
GGCTTTATATGGAGAAGGTA+AGG 0.443686 tig0010469:+19183 Msa1348480:three_prime_UTR
TCAGCTGGATGGCATGATAA+GGG 0.445078 tig0010469:+19099 Msa1348480:three_prime_UTR
CCTATTCTTAGAAATAATGA+TGG 0.462602 tig0010469:+19438 Msa1348480:three_prime_UTR
GCAAGTGGTGAACTCTAAAC+AGG 0.462787 tig0010469:-18557 None:intergenic
TACAATGATATAGGAGATTG+TGG 0.467972 tig0010469:+18427 Msa1348480:intron
AAGTACTTCCATTAAATTGT+CGG 0.471399 tig0010469:-10968 None:intergenic
AAGGAGAGAATATGGCATAA+AGG 0.473036 tig0010469:+18473 Msa1348480:CDS
AATAATGATGGGTTATTAAG+CGG 0.473078 tig0010469:+19450 Msa1348480:three_prime_UTR
TGATCTAAAATTGATGATAC+AGG 0.475870 tig0010469:-19037 None:intergenic
TAATTCATTTCCAAGTTCAA+TGG 0.482603 tig0010469:-11196 None:intergenic
AATGCTATTGAATATACAAA+TGG 0.489437 tig0010469:+18917 Msa1348480:three_prime_UTR
AAACTGCTAGCAAACTATGA+AGG 0.493697 tig0010469:+19073 Msa1348480:three_prime_UTR
GCGGCAGAGGGCAGAAGGTG+TGG 0.498337 tig0010469:-19310 None:intergenic
AGAAGGCGGCAGAGGGCAGA+AGG 0.499716 tig0010469:-19315 None:intergenic
TCTACCAAAACAATCTGATC+TGG 0.501716 tig0010469:-10913 None:intergenic
CAAAGAGGCAAGAAATTACA+TGG 0.507736 tig0010469:+18892 Msa1348480:intron
TCATGCCATCTCGCTTTGCT+AGG 0.511900 tig0010469:+10652 Msa1348480:five_prime_UTR
GTTCACCACTTGCATGATCA+AGG 0.514280 tig0010469:+18567 Msa1348480:three_prime_UTR
AAGCAACTGTTTCGCTGATG+TGG 0.519623 tig0010469:-19531 None:intergenic
GGTGAGAAGTGCAGATCACC+TGG 0.524126 tig0010469:+19367 Msa1348480:three_prime_UTR
GGATTGTCAGAAGGCGGCAG+AGG 0.525146 tig0010469:-19323 None:intergenic
GTCCCAATGAGAAAAGTTGT+TGG 0.539840 tig0010469:+18994 Msa1348480:three_prime_UTR
TCTCGGGCTTTATATGGAGA+AGG 0.541439 tig0010469:+19178 Msa1348480:three_prime_UTR
CTATTCTTAGAAATAATGAT+GGG 0.547480 tig0010469:+19439 Msa1348480:three_prime_UTR
CATTTAATCGAGTATAAGCT+AGG 0.549780 tig0010469:-19623 None:intergenic
GATTGTCAGAAGGCGGCAGA+GGG 0.550966 tig0010469:-19322 None:intergenic
TGATTTGGCCATTTAAGACC+AGG 0.558051 tig0010469:-19385 None:intergenic
TGATAAGGGTTCAAGTAGGA+TGG 0.559261 tig0010469:+19113 Msa1348480:three_prime_UTR
AACTGCTAGCAAACTATGAA+GGG 0.561604 tig0010469:+19074 Msa1348480:three_prime_UTR
AAACTATGAAGGGTTTCAGC+TGG 0.563201 tig0010469:+19084 Msa1348480:three_prime_UTR
GATAACAAAGGATTACATCA+AGG 0.563859 tig0010469:+18454 Msa1348480:CDS
ATAATGATGGGTTATTAAGC+GGG 0.567133 tig0010469:+19451 Msa1348480:three_prime_UTR
TGAACCTCTAGGATATATAT+GGG 0.567144 tig0010469:+10571 Msa1348480:five_prime_UTR
TATGAAGGGTTTCAGCTGGA+TGG 0.571906 tig0010469:+19088 Msa1348480:three_prime_UTR
GTTTCCAAGCTTACAAACCC+TGG 0.573801 tig0010469:-10604 None:intergenic
TGGCATAAAGGAGAGAAGAA+AGG 0.575554 tig0010469:+18485 Msa1348480:CDS
ATATGGGTGAGTGGCTTCCA+GGG 0.579999 tig0010469:+10587 Msa1348480:five_prime_UTR
TGAGACAAAGTTCAAGAGGG+TGG 0.589004 tig0010469:+11128 Msa1348480:CDS
ATAATGAGACAAAGTTCAAG+AGG 0.589640 tig0010469:+11124 Msa1348480:CDS
GAGACAAAGTTCAAGAGGGT+GGG 0.600020 tig0010469:+11129 Msa1348480:CDS
CATAGAAAGGCTTTATACGA+GGG 0.610134 tig0010469:+19264 Msa1348480:three_prime_UTR
TCATTCATGATGTGTGTGTG+TGG 0.610190 tig0010469:+10699 Msa1348480:five_prime_UTR
TTAATGGAAGTACTTTCATG+AGG 0.616108 tig0010469:+10976 Msa1348480:five_prime_UTR
CTAGGATATATATGGGTGAG+TGG 0.618744 tig0010469:+10578 Msa1348480:five_prime_UTR
AGCCTGTGTGGATTGTCAGA+AGG 0.620100 tig0010469:-19332 None:intergenic
ATCTTCCTAGCAAAGCGAGA+TGG 0.622229 tig0010469:-10657 None:intergenic
GCTTTATATGGAGAAGGTAA+GGG 0.623958 tig0010469:+19184 Msa1348480:three_prime_UTR
GTACTTCCATTAAATTGTCG+GGG 0.628480 tig0010469:-10966 None:intergenic
ACACAGGCTGATCATCCACT+TGG 0.630161 tig0010469:+19346 Msa1348480:three_prime_UTR
TAATTGGCTTGTGAACCTCT+AGG 0.640540 tig0010469:+10560 Msa1348480:five_prime_UTR
CGCCTTCTGACAATCCACAC+AGG 0.642397 tig0010469:+19330 Msa1348480:three_prime_UTR
CTGTGTGGATTGTCAGAAGG+CGG 0.647153 tig0010469:-19329 None:intergenic
GATTGTGGTAAAGATAACAA+AGG 0.647801 tig0010469:+18442 Msa1348480:CDS
ACATAGAAAGGCTTTATACG+AGG 0.656319 tig0010469:+19263 Msa1348480:three_prime_UTR
TCTAAAATTGATGATACAGG+TGG 0.658257 tig0010469:-19034 None:intergenic
TAATGAGACAAAGTTCAAGA+GGG 0.659889 tig0010469:+11125 Msa1348480:CDS
TATCTTGATAGCTACTCGCA+AGG 0.663358 tig0010469:-11170 None:intergenic
GGCATGATAAGGGTTCAAGT+AGG 0.663612 tig0010469:+19109 Msa1348480:three_prime_UTR
GATTACCTTGATCATGCAAG+TGG 0.664617 tig0010469:-18572 None:intergenic
ACACATCATGAATGACACAA+TGG 0.669594 tig0010469:-10691 None:intergenic
GATCTGCACTTCTCACCAAG+TGG 0.671647 tig0010469:-19361 None:intergenic
AAGTGGATGATCAGCCTGTG+TGG 0.676233 tig0010469:-19344 None:intergenic
AAACAATCTGATCTGGCATG+TGG 0.676765 tig0010469:-10906 None:intergenic
CTCACCCATATATATCCTAG+AGG 0.681740 tig0010469:-10575 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTAAAATTTATTTTGAA+AGG - tig0010469:18796-18815 None:intergenic 10.0%
!! ATAAATAATTAAAATTTCTC+GGG + tig0010469:19162-19181 Msa1348480:three_prime_UTR 10.0%
!!! AATATTTTTAATTCTTGATT+TGG - tig0010469:19403-19422 None:intergenic 10.0%
!!! TTTGTTTAAAGTTTTTAATA+GGG - tig0010469:19482-19501 None:intergenic 10.0%
!!! TTTTGTTTAAAGTTTTTAAT+AGG - tig0010469:19483-19502 None:intergenic 10.0%
!!! GAATTTTATACTTAACTAAT+TGG + tig0010469:10544-10563 Msa1348480:five_prime_UTR 15.0%
!! ATGACTATTAAAATATTGTA+TGG - tig0010469:10780-10799 None:intergenic 15.0%
!! ATGTCATATTTATATACAAA+TGG - tig0010469:10841-10860 None:intergenic 15.0%
!!! TTGTTTTTTTTTTTTTGATG+TGG + tig0010469:11304-11323 Msa1348480:intron 15.0%
!!! TGTTTTTTTTTTTTTGATGT+GGG + tig0010469:11305-11324 Msa1348480:intron 15.0%
!!! TTTTATCAATTGAGATTTTT+TGG + tig0010469:11496-11515 Msa1348480:intron 15.0%
!!! TTTTGATTTGTTTTGATATA+TGG + tig0010469:11571-11590 Msa1348480:intron 15.0%
!! TCTTAATCTATAAAAATTTG+CGG + tig0010469:11804-11823 Msa1348480:intron 15.0%
!!! TATTATTTTTAGCTTGAATA+TGG + tig0010469:12088-12107 Msa1348480:intron 15.0%
!! ATTATTAAGAGATAAAATAG+AGG + tig0010469:12286-12305 Msa1348480:intron 15.0%
!!! ACTTAAAAAAATGAAAGTAT+TGG - tig0010469:12650-12669 None:intergenic 15.0%
!! TATAGTAAAAATTTCATTGT+AGG + tig0010469:12754-12773 Msa1348480:intron 15.0%
!!! TTATGAATAAAGTATTTAAG+TGG + tig0010469:12884-12903 Msa1348480:intron 15.0%
!! AACAAAAAATAAAAGAGATA+AGG + tig0010469:13653-13672 Msa1348480:intron 15.0%
!! ACAAAAAATAAAAGAGATAA+GGG + tig0010469:13654-13673 Msa1348480:intron 15.0%
!!! TATCATTTTTCACTATAAAT+AGG - tig0010469:14114-14133 None:intergenic 15.0%
!! TATTATTCATTTATAAGCAA+CGG - tig0010469:14213-14232 None:intergenic 15.0%
!! TTATAATACATTGTTTCATT+TGG - tig0010469:14302-14321 None:intergenic 15.0%
!!! TGAAAAGTCATATTTTATTT+TGG - tig0010469:14444-14463 None:intergenic 15.0%
!!! AAAATTTGATTTTGTTTTGT+AGG - tig0010469:15165-15184 None:intergenic 15.0%
!!! TTTGTTAAATGTTTTTATTG+TGG - tig0010469:15324-15343 None:intergenic 15.0%
!! CAATAAAAACATTTAACAAA+AGG + tig0010469:15324-15343 Msa1348480:intron 15.0%
!!! AAAAGTTTTTCATGATTTTT+TGG + tig0010469:15384-15403 Msa1348480:intron 15.0%
!!! TATTTTGAAAATTGAAATTG+AGG - tig0010469:15514-15533 None:intergenic 15.0%
!! AACAAAAAATAAAAGAGATA+AGG + tig0010469:13653-13672 Msa1348480:intron 15.0%
!! ACAAAAAATAAAAGAGATAA+GGG + tig0010469:13654-13673 Msa1348480:intron 15.0%
!!! TATCATTTTTCACTATAAAT+AGG - tig0010469:14114-14133 None:intergenic 15.0%
!! TATTATTCATTTATAAGCAA+CGG - tig0010469:14213-14232 None:intergenic 15.0%
!! TTATAATACATTGTTTCATT+TGG - tig0010469:14302-14321 None:intergenic 15.0%
!!! TGAAAAGTCATATTTTATTT+TGG - tig0010469:14444-14463 None:intergenic 15.0%
!! TGAAATTTAAATATGATCTA+TGG - tig0010469:18060-18079 None:intergenic 15.0%
!!! GATTACATTTTTGTTTTTTA+CGG + tig0010469:19221-19240 Msa1348480:three_prime_UTR 15.0%
!!! ATTACATTTTTGTTTTTTAC+GGG + tig0010469:19222-19241 Msa1348480:three_prime_UTR 15.0%
!! AAAATGCAGTAAATATTTAT+AGG - tig0010469:19829-19848 None:intergenic 15.0%
!!! TAAATATTTACTGCATTTTA+CGG + tig0010469:19830-19849 Msa1348480:three_prime_UTR 15.0%
!!! GTGTTATTTTCAATTACTTT+TGG + tig0010469:11012-11031 Msa1348480:intron 20.0%
!! ACAAAATTTAGAAATACTCA+TGG - tig0010469:11061-11080 None:intergenic 20.0%
!! GAGAAAAAAACTTAATATGA+GGG - tig0010469:11246-11265 None:intergenic 20.0%
!! AGAGAAAAAAACTTAATATG+AGG - tig0010469:11247-11266 None:intergenic 20.0%
!! ATGCAAAAAAGAAAAGTAAA+AGG - tig0010469:11434-11453 None:intergenic 20.0%
!! TATTACAAAGATAAGTAAGA+TGG + tig0010469:11669-11688 Msa1348480:intron 20.0%
!! ATCGTTTAAATCATAATTTC+TGG + tig0010469:11756-11775 Msa1348480:intron 20.0%
!! CTTAATCTATAAAAATTTGC+GGG + tig0010469:11805-11824 Msa1348480:intron 20.0%
!! TGTTTAGATAAACAAAATAC+TGG + tig0010469:11986-12005 Msa1348480:intron 20.0%
!!! TATGGTTTTTGATTGTTTTA+TGG + tig0010469:12106-12125 Msa1348480:intron 20.0%
!!! TTAAGGTATAACATCTTTTT+TGG - tig0010469:12437-12456 None:intergenic 20.0%
!! AGAAAATGAAGATGTTAAAT+AGG + tig0010469:12589-12608 Msa1348480:intron 20.0%
!! TATATCTACACTTATATTGT+TGG - tig0010469:12814-12833 None:intergenic 20.0%
!! AATTAATCAAAATCCAAGTT+AGG - tig0010469:13127-13146 None:intergenic 20.0%
!!! AGTTTAGAATCATATGTTAA+TGG + tig0010469:13253-13272 Msa1348480:intron 20.0%
!!! AAAATTTTCTATGTAACCTT+TGG + tig0010469:13286-13305 Msa1348480:intron 20.0%
!!! TTGTAACTCTTATTTGTATT+GGG - tig0010469:13903-13922 None:intergenic 20.0%
!!! ATTGTAACTCTTATTTGTAT+TGG - tig0010469:13904-13923 None:intergenic 20.0%
!!! ATTTGTTATATCTACACATT+TGG - tig0010469:13941-13960 None:intergenic 20.0%
!! GTTGCTTATAAATGAATAAT+AGG + tig0010469:14212-14231 Msa1348480:intron 20.0%
!!! AACATTTTGTTATGTATTAG+TGG - tig0010469:14253-14272 None:intergenic 20.0%
!! TGAAACAATGTATTATAACT+CGG + tig0010469:14304-14323 Msa1348480:intron 20.0%
!!! TTTGATTTGAACTCTATTTT+TGG - tig0010469:14377-14396 None:intergenic 20.0%
!! ACCAATATTCTTGTAATAAT+AGG + tig0010469:15056-15075 Msa1348480:intron 20.0%
!! TCCTATTATTACAAGAATAT+TGG - tig0010469:15060-15079 None:intergenic 20.0%
!! CTTTCTTAAATTACAAATAG+AGG + tig0010469:15281-15300 Msa1348480:intron 20.0%
!! TATCTCTTGTGAAAATAAAA+AGG - tig0010469:15565-15584 None:intergenic 20.0%
!!! AGATTTATCTTTTATGTCTT+TGG - tig0010469:16108-16127 None:intergenic 20.0%
!!! TGAATTATTTAGGATGAAAT+CGG - tig0010469:16288-16307 None:intergenic 20.0%
!!! AGAATGAAAATTTTCATTGA+GGG - tig0010469:16602-16621 None:intergenic 20.0%
!!! TTGTAACTCTTATTTGTATT+GGG - tig0010469:13903-13922 None:intergenic 20.0%
!!! ATTGTAACTCTTATTTGTAT+TGG - tig0010469:13904-13923 None:intergenic 20.0%
!!! ATTTGTTATATCTACACATT+TGG - tig0010469:13941-13960 None:intergenic 20.0%
!! GTTGCTTATAAATGAATAAT+AGG + tig0010469:14212-14231 Msa1348480:intron 20.0%
!!! AACATTTTGTTATGTATTAG+TGG - tig0010469:14253-14272 None:intergenic 20.0%
!! TGAAACAATGTATTATAACT+CGG + tig0010469:14304-14323 Msa1348480:intron 20.0%
!!! TTTGATTTGAACTCTATTTT+TGG - tig0010469:14377-14396 None:intergenic 20.0%
!! TCACTAAAAATATACCAAAT+TGG - tig0010469:18010-18029 None:intergenic 20.0%
!! TTACTACCAATAAACAATTT+GGG - tig0010469:18251-18270 None:intergenic 20.0%
!! ATTACTACCAATAAACAATT+TGG - tig0010469:18252-18271 None:intergenic 20.0%
!!! CTGAAATTTTACAATGATAT+AGG + tig0010469:18418-18437 Msa1348480:intron 20.0%
!!! TTTTAATTTTTATGCAACCA+AGG - tig0010469:18741-18760 None:intergenic 20.0%
!! AATGCTATTGAATATACAAA+TGG + tig0010469:18917-18936 Msa1348480:three_prime_UTR 20.0%
!! TTACATATCTTGTATAGAAT+TGG + tig0010469:18969-18988 Msa1348480:three_prime_UTR 20.0%
!!! TTACATTTTTGTTTTTTACG+GGG + tig0010469:19223-19242 Msa1348480:three_prime_UTR 20.0%
!! CTATTCTTAGAAATAATGAT+GGG + tig0010469:19439-19458 Msa1348480:three_prime_UTR 20.0%
!! AAATAGCTCCATTTATATAA+GGG + tig0010469:19556-19575 Msa1348480:three_prime_UTR 20.0%
!! AATCAAAACCCTTATATAAA+TGG - tig0010469:19567-19586 None:intergenic 20.0%
!!! TTTTTGCACAAATAAAATTG+TGG + tig0010469:19732-19751 Msa1348480:three_prime_UTR 20.0%
! TCAAATTAGGTTATGTAGTT+AGG + tig0010469:10518-10537 Msa1348480:five_prime_UTR 25.0%
! CAAATTAGGTTATGTAGTTA+GGG + tig0010469:10519-10538 Msa1348480:five_prime_UTR 25.0%
! AAGTACTTCCATTAAATTGT+CGG - tig0010469:10971-10990 None:intergenic 25.0%
! TAATTCATTTCCAAGTTCAA+TGG - tig0010469:11199-11218 None:intergenic 25.0%
! ATTCCTTTGTAAATTTCAGT+TGG + tig0010469:11367-11386 Msa1348480:intron 25.0%
! TTCCTTTGTAAATTTCAGTT+GGG + tig0010469:11368-11387 Msa1348480:intron 25.0%
! AAAAGGTTTGACATGAAAAA+TGG - tig0010469:11417-11436 None:intergenic 25.0%
! TAGTGAAAAACAGAGTTATA+TGG - tig0010469:12206-12225 None:intergenic 25.0%
! TCTCTAAATTGACAAGTTTA+AGG - tig0010469:12454-12473 None:intergenic 25.0%
! TTAAACTTGTCAATTTAGAG+AGG + tig0010469:12453-12472 Msa1348480:intron 25.0%
! TATCATATGCCTTCATAATA+CGG + tig0010469:12479-12498 Msa1348480:intron 25.0%
! ATCTCATATCTAATCTTTCA+TGG + tig0010469:12700-12719 Msa1348480:intron 25.0%
! ATGAAAGGATTCATAATCTT+TGG + tig0010469:12978-12997 Msa1348480:intron 25.0%
!! TATGTAACCTTTGGTTTATT+TGG + tig0010469:13295-13314 Msa1348480:intron 25.0%
!!! TAAGCACTTTTTTTCTACTT+TGG - tig0010469:13580-13599 None:intergenic 25.0%
! TGCGAAAAATAAAGATGTTA+AGG + tig0010469:13617-13636 Msa1348480:intron 25.0%
! ACAAGAAGTTTATACTAGTT+CGG + tig0010469:13691-13710 Msa1348480:intron 25.0%
!! ATAAATAGGTGCATTGTTTT+AGG - tig0010469:14100-14119 None:intergenic 25.0%
!! TATTTTCATTAAGAGTCCAA+CGG - tig0010469:14161-14180 None:intergenic 25.0%
!! GCTAGTTTCTTTATGTTAAA+TGG - tig0010469:14191-14210 None:intergenic 25.0%
! ACATAACAAAATGTTTCCAA+CGG + tig0010469:14258-14277 Msa1348480:intron 25.0%
!! ATAAATCATTTTCATACCGT+TGG - tig0010469:14277-14296 None:intergenic 25.0%
! ATGTTTGTCATCATCAAAAA+GGG - tig0010469:14705-14724 None:intergenic 25.0%
! AAATTCAAGAGAAGCAAATA+TGG - tig0010469:14985-15004 None:intergenic 25.0%
!! TTTGAGAAGAACTTTTGATA+AGG + tig0010469:15016-15035 Msa1348480:intron 25.0%
!! AATATTGGTTATGCATCATA+TGG - tig0010469:15045-15064 None:intergenic 25.0%
!!! ATTGTACCAATTTTAGTTCT+TGG + tig0010469:15127-15146 Msa1348480:intron 25.0%
!! CAAAATCAAATTTTCGCTTT+TGG + tig0010469:15171-15190 Msa1348480:intron 25.0%
! ACAATGATATGAATGGTAAA+TGG - tig0010469:15260-15279 None:intergenic 25.0%
! AGAAAGAACAATGATATGAA+TGG - tig0010469:15267-15286 None:intergenic 25.0%
!! AGAAAACTTGAACATCATTT+TGG - tig0010469:15454-15473 None:intergenic 25.0%
!! AGTAGAAATAGTTTTCTTAG+AGG + tig0010469:15668-15687 Msa1348480:intron 25.0%
! AAAGATACAAACTCATCTAA+TGG - tig0010469:15852-15871 None:intergenic 25.0%
!!! CTCTGAGATGATTTATTATA+TGG + tig0010469:16228-16247 Msa1348480:intron 25.0%
!!! TAAATCGTTTTTGCATATCT+TGG + tig0010469:16252-16271 Msa1348480:intron 25.0%
!! GAATTATTTAGGATGAAATC+GGG - tig0010469:16287-16306 None:intergenic 25.0%
! CTCATGAGTATGAATTATTT+AGG - tig0010469:16298-16317 None:intergenic 25.0%
!! AACCTTTTTCTTTTCATCTT+TGG + tig0010469:16478-16497 Msa1348480:intron 25.0%
!! AACATTATTGACTAAATGAG+TGG + tig0010469:16529-16548 Msa1348480:intron 25.0%
!! ACATTATTGACTAAATGAGT+GGG + tig0010469:16530-16549 Msa1348480:intron 25.0%
!! GAGAATGAAAATTTTCATTG+AGG - tig0010469:16603-16622 None:intergenic 25.0%
!!! TAAGCACTTTTTTTCTACTT+TGG - tig0010469:13580-13599 None:intergenic 25.0%
! TGCGAAAAATAAAGATGTTA+AGG + tig0010469:13617-13636 Msa1348480:intron 25.0%
! ACAAGAAGTTTATACTAGTT+CGG + tig0010469:13691-13710 Msa1348480:intron 25.0%
!! ATAAATAGGTGCATTGTTTT+AGG - tig0010469:14100-14119 None:intergenic 25.0%
!! TATTTTCATTAAGAGTCCAA+CGG - tig0010469:14161-14180 None:intergenic 25.0%
!! GCTAGTTTCTTTATGTTAAA+TGG - tig0010469:14191-14210 None:intergenic 25.0%
! ACATAACAAAATGTTTCCAA+CGG + tig0010469:14258-14277 Msa1348480:intron 25.0%
!! ATAAATCATTTTCATACCGT+TGG - tig0010469:14277-14296 None:intergenic 25.0%
!!! AGGTAATAAAAGTACCAATT+TGG + tig0010469:17993-18012 Msa1348480:intron 25.0%
! AAAGGATCATATGATATGTT+GGG - tig0010469:18607-18626 None:intergenic 25.0%
! AAAAGGATCATATGATATGT+TGG - tig0010469:18608-18627 None:intergenic 25.0%
! AGTAAATTGAATTGGACAAA+AGG - tig0010469:18625-18644 None:intergenic 25.0%
! AGTTCTACATAATTGAAGTT+TGG - tig0010469:18697-18716 None:intergenic 25.0%
!!! TTCTAATTGTTGTGTTGTTT+TGG + tig0010469:18827-18846 Msa1348480:intron 25.0%
!! TGATCTAAAATTGATGATAC+AGG - tig0010469:19040-19059 None:intergenic 25.0%
!!! CCATCATTATTTCTAAGAAT+AGG - tig0010469:19441-19460 None:intergenic 25.0%
! CCTATTCTTAGAAATAATGA+TGG + tig0010469:19438-19457 Msa1348480:three_prime_UTR 25.0%
!!! AATAATGATGGGTTATTAAG+CGG + tig0010469:19450-19469 Msa1348480:three_prime_UTR 25.0%
!! TTAAAGTTTTTAATAGGGAG+TGG - tig0010469:19477-19496 None:intergenic 25.0%
! GAAATAGCTCCATTTATATA+AGG + tig0010469:19555-19574 Msa1348480:three_prime_UTR 25.0%
!! GCTCTTTTTGTATAAAATTG+TGG + tig0010469:19788-19807 Msa1348480:three_prime_UTR 25.0%
!! TGAACCTCTAGGATATATAT+GGG + tig0010469:10571-10590 Msa1348480:five_prime_UTR 30.0%
TTGTAAGCTTGGAAACATAT+TGG + tig0010469:10611-10630 Msa1348480:five_prime_UTR 30.0%
TTGTATGGTACTTACAGTTT+AGG - tig0010469:10765-10784 None:intergenic 30.0%
GTCAAAAAACTCTTCATGAA+TGG - tig0010469:10947-10966 None:intergenic 30.0%
AGTACTTCCATTAAATTGTC+GGG - tig0010469:10970-10989 None:intergenic 30.0%
!! TTAATGGAAGTACTTTCATG+AGG + tig0010469:10976-10995 Msa1348480:five_prime_UTR 30.0%
! TGTTTTGTGAAACTTTTAGC+AGG + tig0010469:11078-11097 Msa1348480:intron 30.0%
ATAATGAGACAAAGTTCAAG+AGG + tig0010469:11124-11143 Msa1348480:CDS 30.0%
TAATGAGACAAAGTTCAAGA+GGG + tig0010469:11125-11144 Msa1348480:CDS 30.0%
!!! TTTTTTTGATGTGGGAGAAA+TGG + tig0010469:11313-11332 Msa1348480:intron 30.0%
! AAATGGTTACTTTGAACACA+AGG - tig0010469:11400-11419 None:intergenic 30.0%
! TAATTTCTGGAGACATCTTA+TGG + tig0010469:11769-11788 Msa1348480:intron 30.0%
TTACAGTGATACTGTGTATT+TGG - tig0010469:11928-11947 None:intergenic 30.0%
!! TTGATTGTTTTATGGAGAAC+AGG + tig0010469:12114-12133 Msa1348480:intron 30.0%
AACTCTCAATGTAGAAAAGA+TGG + tig0010469:12310-12329 Msa1348480:intron 30.0%
!! TCTTAGGTGATTTGGTTATT+CGG + tig0010469:12343-12362 Msa1348480:intron 30.0%
ATCATATGCCTTCATAATAC+GGG + tig0010469:12480-12499 Msa1348480:intron 30.0%
TTCCATCTGCATAAATGAAT+AGG + tig0010469:12504-12523 Msa1348480:intron 30.0%
ATCCTATTCATTTATGCAGA+TGG - tig0010469:12509-12528 None:intergenic 30.0%
! GTGGAAGTTTTCTTCTTTAT+TGG + tig0010469:12903-12922 Msa1348480:intron 30.0%
AATGATCAAGAAGAGATGAA+AGG + tig0010469:12963-12982 Msa1348480:intron 30.0%
! AGGATTCATAATCTTTGGAA+TGG + tig0010469:12983-13002 Msa1348480:intron 30.0%
! GCTTTTATACTGCACTATAA+AGG - tig0010469:13402-13421 None:intergenic 30.0%
AGTGCAGTATAAAAGCTTAT+TGG + tig0010469:13406-13425 Msa1348480:intron 30.0%
!! AGCTTTTAATTAGGATAAGC+TGG + tig0010469:13776-13795 Msa1348480:intron 30.0%
!! CTACAAAGGATTGTTTTGTT+TGG - tig0010469:13828-13847 None:intergenic 30.0%
!! TTTTAGAGACTCTTCTACAA+AGG - tig0010469:13842-13861 None:intergenic 30.0%
ATTGAAAATAATTCAGCCGT+TGG + tig0010469:14142-14161 Msa1348480:intron 30.0%
AAGAACAAAGATGCAAAAAG+CGG - tig0010469:14616-14635 None:intergenic 30.0%
! TTTTGCATCTTTGTTCTTCT+AGG + tig0010469:14618-14637 Msa1348480:intron 30.0%
TGTTTGTCATCATCAAAAAG+GGG - tig0010469:14704-14723 None:intergenic 30.0%
GATGTTTGTCATCATCAAAA+AGG - tig0010469:14706-14725 None:intergenic 30.0%
! TGATGATGACAAACATCTAT+TGG + tig0010469:14709-14728 Msa1348480:intron 30.0%
!! GAGTGATTTGCTCAATAAAA+GGG + tig0010469:14731-14750 Msa1348480:intron 30.0%
TAATTGTTTGCGTATAGTGA+GGG - tig0010469:14817-14836 None:intergenic 30.0%
TTAATTGTTTGCGTATAGTG+AGG - tig0010469:14818-14837 None:intergenic 30.0%
! TATGTGATTTGCATGTTTCA+GGG - tig0010469:14851-14870 None:intergenic 30.0%
! TTATGTGATTTGCATGTTTC+AGG - tig0010469:14852-14871 None:intergenic 30.0%
!!! TTTTTGATAATGCCAAAAGG+GGG - tig0010469:14879-14898 None:intergenic 30.0%
!!! CTTTTTGATAATGCCAAAAG+GGG - tig0010469:14880-14899 None:intergenic 30.0%
!!! GCTTTTTGATAATGCCAAAA+GGG - tig0010469:14881-14900 None:intergenic 30.0%
! TTTTGGCATTATCAAAAAGC+CGG + tig0010469:14881-14900 Msa1348480:intron 30.0%
! TTGCCAAGATTATTTCTTTC+CGG - tig0010469:14903-14922 None:intergenic 30.0%
ATATGAATGGTAAATGGAAG+TGG - tig0010469:15254-15273 None:intergenic 30.0%
!! TGTTTTTATTGTGGAAGAGA+AGG - tig0010469:15315-15334 None:intergenic 30.0%
! ACTTATAATAAAGCCGGTTT+GGG - tig0010469:15417-15436 None:intergenic 30.0%
AACTTATAATAAAGCCGGTT+TGG - tig0010469:15418-15437 None:intergenic 30.0%
AAGGGAACTTATAATAAAGC+CGG - tig0010469:15423-15442 None:intergenic 30.0%
!! ATCATTTTGGCGAATCAAAA+GGG - tig0010469:15441-15460 None:intergenic 30.0%
ACACTTGCAAAATTCACAAT+GGG - tig0010469:15480-15499 None:intergenic 30.0%
AGTAGCATATTCATGTTTCA+TGG - tig0010469:15817-15836 None:intergenic 30.0%
AGTCAAAAGCGATATACAAA+CGG - tig0010469:15903-15922 None:intergenic 30.0%
!!! GTATATCGCTTTTGACTTAA+AGG + tig0010469:15906-15925 Msa1348480:intron 30.0%
!!! CTTTTGACTTAAAGGACAAT+TGG + tig0010469:15914-15933 Msa1348480:intron 30.0%
! TACTTTGTTTGGAAAATTGC+AGG - tig0010469:16084-16103 None:intergenic 30.0%
ATCTTTAGATTCACAAATCG+CGG + tig0010469:16124-16143 Msa1348480:intron 30.0%
TGGAAAATCTTTCAATAACG+AGG - tig0010469:16204-16223 None:intergenic 30.0%
GACCAAAGATGAAAAGAAAA+AGG - tig0010469:16483-16502 None:intergenic 30.0%
TGAATAAACCAAGATCTCTT+TGG - tig0010469:16505-16524 None:intergenic 30.0%
ACTAAATGAGTGGGAATAAA+TGG + tig0010469:16539-16558 Msa1348480:intron 30.0%
! ATTTGGGATGCTATTGAAAA+CGG - tig0010469:16566-16585 None:intergenic 30.0%
!! AGCTTTTAATTAGGATAAGC+TGG + tig0010469:13776-13795 Msa1348480:intron 30.0%
!! CTACAAAGGATTGTTTTGTT+TGG - tig0010469:13828-13847 None:intergenic 30.0%
!! TTTTAGAGACTCTTCTACAA+AGG - tig0010469:13842-13861 None:intergenic 30.0%
ATTGAAAATAATTCAGCCGT+TGG + tig0010469:14142-14161 Msa1348480:intron 30.0%
AAGAACAAAGATGCAAAAAG+CGG - tig0010469:14616-14635 None:intergenic 30.0%
! TTTTGCATCTTTGTTCTTCT+AGG + tig0010469:14618-14637 Msa1348480:intron 30.0%
TTTCAGTTTGAATCTTGTGT+AGG + tig0010469:18150-18169 Msa1348480:intron 30.0%
TTCAGTTTGAATCTTGTGTA+GGG + tig0010469:18151-18170 Msa1348480:intron 30.0%
CTAATGATTAAGTAATCAGC+AGG - tig0010469:18211-18230 None:intergenic 30.0%
AAGTTGCCCAAATTGTTTAT+TGG + tig0010469:18242-18261 Msa1348480:intron 30.0%
GAAACACAATGCAAAACATT+TGG + tig0010469:18301-18320 Msa1348480:intron 30.0%
TACAATGATATAGGAGATTG+TGG + tig0010469:18427-18446 Msa1348480:intron 30.0%
GATTGTGGTAAAGATAACAA+AGG + tig0010469:18442-18461 Msa1348480:CDS 30.0%
GATAACAAAGGATTACATCA+AGG + tig0010469:18454-18473 Msa1348480:CDS 30.0%
ATTACATCAAGGAGAGAATA+TGG + tig0010469:18465-18484 Msa1348480:CDS 30.0%
! AAGAAAGGACCTGTTATTTA+TGG + tig0010469:18500-18519 Msa1348480:CDS 30.0%
! AGAAAGGACCTGTTATTTAT+GGG + tig0010469:18501-18520 Msa1348480:CDS 30.0%
TCCAATTCAATTTACTGCTA+TGG + tig0010469:18629-18648 Msa1348480:intron 30.0%
ACCATAGCAGTAAATTGAAT+TGG - tig0010469:18633-18652 None:intergenic 30.0%
GTTAAACTACATTTACACCT+TGG + tig0010469:18721-18740 Msa1348480:intron 30.0%
! AACCAACAACTTTTCTCATT+GGG - tig0010469:18999-19018 None:intergenic 30.0%
! AAACCAACAACTTTTCTCAT+TGG - tig0010469:19000-19019 None:intergenic 30.0%
! TCTAAAATTGATGATACAGG+TGG - tig0010469:19037-19056 None:intergenic 30.0%
! AAAATTTCTCGGGCTTTATA+TGG + tig0010469:19172-19191 Msa1348480:three_prime_UTR 30.0%
!!! ATTTTTGTTTTTTACGGGGA+AGG + tig0010469:19227-19246 Msa1348480:three_prime_UTR 30.0%
! TAATCTGGCTTAACATAGAA+AGG + tig0010469:19251-19270 Msa1348480:three_prime_UTR 30.0%
!! ATAATGATGGGTTATTAAGC+GGG + tig0010469:19451-19470 Msa1348480:three_prime_UTR 30.0%
CATTTAATCGAGTATAAGCT+AGG - tig0010469:19626-19645 None:intergenic 30.0%
CTAGCTTATACTCGATTAAA+TGG + tig0010469:19624-19643 Msa1348480:three_prime_UTR 30.0%
!! GTGAACCTCTAGGATATATA+TGG + tig0010469:10570-10589 Msa1348480:five_prime_UTR 35.0%
GAATGACACAATGGACAAAA+TGG - tig0010469:10685-10704 None:intergenic 35.0%
ACACATCATGAATGACACAA+TGG - tig0010469:10694-10713 None:intergenic 35.0%
TCTACCAAAACAATCTGATC+TGG - tig0010469:10916-10935 None:intergenic 35.0%
! TTTTGACCCCGACAATTTAA+TGG + tig0010469:10960-10979 Msa1348480:five_prime_UTR 35.0%
GTACTTCCATTAAATTGTCG+GGG - tig0010469:10969-10988 None:intergenic 35.0%
CACCCAACTGAAATTTACAA+AGG - tig0010469:11373-11392 None:intergenic 35.0%
! TGAGAAACTGTCAAAGTGTT+TGG + tig0010469:11888-11907 Msa1348480:intron 35.0%
! ACTGTCAAAGTGTTTGGTTA+TGG + tig0010469:11894-11913 Msa1348480:intron 35.0%
! CTGTCAAAGTGTTTGGTTAT+GGG + tig0010469:11895-11914 Msa1348480:intron 35.0%
AATGAGAGAGAACTCAAAAG+AGG - tig0010469:12016-12035 None:intergenic 35.0%
!! AGATGGTAGAGTATTGTCTT+AGG + tig0010469:12327-12346 Msa1348480:intron 35.0%
! GAGTATTGTCTTAGGTGATT+TGG + tig0010469:12335-12354 Msa1348480:intron 35.0%
!! CTTAGGTGATTTGGTTATTC+GGG + tig0010469:12344-12363 Msa1348480:intron 35.0%
!! TTAGGTGATTTGGTTATTCG+GGG + tig0010469:12345-12364 Msa1348480:intron 35.0%
AGATACTGTTAACTCTCTCT+TGG - tig0010469:12412-12431 None:intergenic 35.0%
AGAAAGAGCAAGTCATTTCA+TGG + tig0010469:12673-12692 Msa1348480:intron 35.0%
TTGACCACAAATGTCATAGT+TGG + tig0010469:13016-13035 Msa1348480:intron 35.0%
TGACCACAAATGTCATAGTT+GGG + tig0010469:13017-13036 Msa1348480:intron 35.0%
ATACCCAACTATGACATTTG+TGG - tig0010469:13023-13042 None:intergenic 35.0%
ATCAAAATCCAAGTTAGGCA+AGG - tig0010469:13122-13141 None:intergenic 35.0%
GCATAGAGATAAAAGACATC+AGG - tig0010469:13324-13343 None:intergenic 35.0%
CTATAAAGGACTTTGTAGGA+AGG - tig0010469:13388-13407 None:intergenic 35.0%
TGCACTATAAAGGACTTTGT+AGG - tig0010469:13392-13411 None:intergenic 35.0%
TAGAGCAGTGAAAATCTCAA+GGG - tig0010469:13757-13776 None:intergenic 35.0%
!!! CACTGCTCTAGCTTTTAATT+AGG + tig0010469:13767-13786 Msa1348480:intron 35.0%
! AGAGTGCTCGTTATTTGTAA+AGG - tig0010469:13805-13824 None:intergenic 35.0%
! AGATTCAAGCTTTCAAGTCT+TGG - tig0010469:14587-14606 None:intergenic 35.0%
! AAACCAAAGTATTCCTGTCA+AGG + tig0010469:14661-14680 Msa1348480:intron 35.0%
ATGTGAATATATGCCTTGAC+AGG - tig0010469:14677-14696 None:intergenic 35.0%
GTTTGTCATCATCAAAAAGG+GGG - tig0010469:14703-14722 None:intergenic 35.0%
!! GGAGTGATTTGCTCAATAAA+AGG + tig0010469:14730-14749 Msa1348480:intron 35.0%
AATTGTTTGCGTATAGTGAG+GGG - tig0010469:14816-14835 None:intergenic 35.0%
! ATGTGATTTGCATGTTTCAG+GGG - tig0010469:14850-14869 None:intergenic 35.0%
!!! GGCTTTTTGATAATGCCAAA+AGG - tig0010469:14882-14901 None:intergenic 35.0%
AAGCCGGAAAGAAATAATCT+TGG + tig0010469:14897-14916 Msa1348480:intron 35.0%
GGAAAGAAATAATCTTGGCA+AGG + tig0010469:14902-14921 Msa1348480:intron 35.0%
TATTCAAAGCACATGAAAGG+GGG - tig0010469:15098-15117 None:intergenic 35.0%
CTATTCAAAGCACATGAAAG+GGG - tig0010469:15099-15118 None:intergenic 35.0%
GCTATTCAAAGCACATGAAA+GGG - tig0010469:15100-15119 None:intergenic 35.0%
TGCTATTCAAAGCACATGAA+AGG - tig0010469:15101-15120 None:intergenic 35.0%
TGAAGGCCAAGAACTAAAAT+TGG - tig0010469:15136-15155 None:intergenic 35.0%
! AAATGGAAGTGGATTCCAAA+GGG - tig0010469:15243-15262 None:intergenic 35.0%
! TAAATGGAAGTGGATTCCAA+AGG - tig0010469:15244-15263 None:intergenic 35.0%
!! GGAGAACTTGATGTTTTGTT+TGG + tig0010469:15345-15364 Msa1348480:intron 35.0%
!! CATCATTTTGGCGAATCAAA+AGG - tig0010469:15442-15461 None:intergenic 35.0%
CACACTTGCAAAATTCACAA+TGG - tig0010469:15481-15500 None:intergenic 35.0%
ATGTTTCATGGCAAATCATG+AGG - tig0010469:15805-15824 None:intergenic 35.0%
AAAGAAGGCTTATATCGCTT+GGG - tig0010469:15880-15899 None:intergenic 35.0%
AATCCAAATTGCAACAAGTG+TGG - tig0010469:15960-15979 None:intergenic 35.0%
CTTGTTGCAATTTGGATTGA+AGG + tig0010469:15962-15981 Msa1348480:intron 35.0%
! ATGTCTTTGGCTACTTTGTT+TGG - tig0010469:16095-16114 None:intergenic 35.0%
ATAAATCATCTCAGAGCTCT+TGG - tig0010469:16224-16243 None:intergenic 35.0%
TACCTTCATGGGTCAATTTA+AGG + tig0010469:16354-16373 Msa1348480:intron 35.0%
ACCTTCATGGGTCAATTTAA+GGG + tig0010469:16355-16374 Msa1348480:intron 35.0%
TACAACCGCTAAGAAAATGT+GGG - tig0010469:16384-16403 None:intergenic 35.0%
CTCATCAATGCTTAATGAAG+CGG + tig0010469:16424-16443 Msa1348480:intron 35.0%
! GGGAGTTGATTGTGATATTT+GGG - tig0010469:16582-16601 None:intergenic 35.0%
! AGGGAGTTGATTGTGATATT+TGG - tig0010469:16583-16602 None:intergenic 35.0%
TAGAGCAGTGAAAATCTCAA+GGG - tig0010469:13757-13776 None:intergenic 35.0%
!!! CACTGCTCTAGCTTTTAATT+AGG + tig0010469:13767-13786 Msa1348480:intron 35.0%
! AGAGTGCTCGTTATTTGTAA+AGG - tig0010469:13805-13824 None:intergenic 35.0%
! AGATTCAAGCTTTCAAGTCT+TGG - tig0010469:14587-14606 None:intergenic 35.0%
! AAACCAAAGTATTCCTGTCA+AGG + tig0010469:14661-14680 Msa1348480:intron 35.0%
TTGTGAATATATGCCTTGAC+AGG - tig0010469:17936-17955 None:intergenic 35.0%
TAAACTGCATAACTGACATG+AGG + tig0010469:17973-17992 Msa1348480:intron 35.0%
! AAATGTGAGTATTGTGCGTT+GGG - tig0010469:18351-18370 None:intergenic 35.0%
!! TAAGAAGGCACTTCTAAAGA+GGG - tig0010469:18387-18406 None:intergenic 35.0%
TCAGCATTGTATCAGTAAGA+AGG - tig0010469:18402-18421 None:intergenic 35.0%
AAGGAGAGAATATGGCATAA+AGG + tig0010469:18473-18492 Msa1348480:CDS 35.0%
GCTTTCTTCCCATAAATAAC+AGG - tig0010469:18512-18531 None:intergenic 35.0%
AGAGCTACTCATCAAATTTC+AGG - tig0010469:18536-18555 None:intergenic 35.0%
CAAAGAGGCAAGAAATTACA+TGG + tig0010469:18892-18911 Msa1348480:intron 35.0%
AAACTGCTAGCAAACTATGA+AGG + tig0010469:19073-19092 Msa1348480:three_prime_UTR 35.0%
AACTGCTAGCAAACTATGAA+GGG + tig0010469:19074-19093 Msa1348480:three_prime_UTR 35.0%
GCTTTATATGGAGAAGGTAA+GGG + tig0010469:19184-19203 Msa1348480:three_prime_UTR 35.0%
! ACATAGAAAGGCTTTATACG+AGG + tig0010469:19263-19282 Msa1348480:three_prime_UTR 35.0%
! CATAGAAAGGCTTTATACGA+GGG + tig0010469:19264-19283 Msa1348480:three_prime_UTR 35.0%
AAAATGAGCCACAAAAATGC+AGG + tig0010469:19600-19619 Msa1348480:three_prime_UTR 35.0%
!! TAATTGGCTTGTGAACCTCT+AGG + tig0010469:10560-10579 Msa1348480:five_prime_UTR 40.0%
CTCACCCATATATATCCTAG+AGG - tig0010469:10578-10597 None:intergenic 40.0%
CTAGGATATATATGGGTGAG+TGG + tig0010469:10578-10597 Msa1348480:five_prime_UTR 40.0%
TCATTCATGATGTGTGTGTG+TGG + tig0010469:10699-10718 Msa1348480:five_prime_UTR 40.0%
AAACAATCTGATCTGGCATG+TGG - tig0010469:10909-10928 None:intergenic 40.0%
! CATGCCAGATCAGATTGTTT+TGG + tig0010469:10909-10928 Msa1348480:five_prime_UTR 40.0%
! TATCTTGATAGCTACTCGCA+AGG - tig0010469:11173-11192 None:intergenic 40.0%
CAAGATACTGCCATTGAACT+TGG + tig0010469:11186-11205 Msa1348480:CDS 40.0%
! ACTGTACTTTGTTTCGCTCT+TGG + tig0010469:11632-11651 Msa1348480:intron 40.0%
! AAAGTGTTTAGATAGCAGCC+AGG - tig0010469:11869-11888 None:intergenic 40.0%
!! TAGGTGATTTGGTTATTCGG+GGG + tig0010469:12346-12365 Msa1348480:intron 40.0%
TAATCTTTCATGGTACCTGC+AGG + tig0010469:12710-12729 Msa1348480:intron 40.0%
TGTTCAAACCTTGCCTAACT+TGG + tig0010469:13111-13130 Msa1348480:intron 40.0%
!!! GCTCTAAGATTTTGCAAGCT+TGG + tig0010469:13208-13227 Msa1348480:intron 40.0%
CAGGCATCCAAATAAACCAA+AGG - tig0010469:13305-13324 None:intergenic 40.0%
TAGTTGAGGGAGAACTTGAA+AGG + tig0010469:13447-13466 Msa1348480:intron 40.0%
GGGAGAACTTGAAAGGAAAA+TGG + tig0010469:13454-13473 Msa1348480:intron 40.0%
AGTGACTTCAAACACACAAG+AGG + tig0010469:13497-13516 Msa1348480:intron 40.0%
GTGACTTCAAACACACAAGA+GGG + tig0010469:13498-13517 Msa1348480:intron 40.0%
TGACTTCAAACACACAAGAG+GGG + tig0010469:13499-13518 Msa1348480:intron 40.0%
TAGTTCGGCCTAAAACAACA+AGG + tig0010469:13706-13725 Msa1348480:intron 40.0%
!!! AGACTAGGCCTTGTTGTTTT+AGG - tig0010469:13717-13736 None:intergenic 40.0%
AGAGCAGTGAAAATCTCAAG+GGG - tig0010469:13756-13775 None:intergenic 40.0%
CTAGAGCAGTGAAAATCTCA+AGG - tig0010469:13758-13777 None:intergenic 40.0%
TCAAGAGAGGTGATATCTCT+TGG - tig0010469:13865-13884 None:intergenic 40.0%
TATCACCTCTCTTGAAACCT+TGG + tig0010469:13870-13889 Msa1348480:intron 40.0%
ATCACCTCTCTTGAAACCTT+GGG + tig0010469:13871-13890 Msa1348480:intron 40.0%
!!! AGGTGCATTGTTTTAGGTCT+TGG - tig0010469:14094-14113 None:intergenic 40.0%
ATGCCTTGACAGGAATACTT+TGG - tig0010469:14667-14686 None:intergenic 40.0%
ATTGTTTGCGTATAGTGAGG+GGG - tig0010469:14815-14834 None:intergenic 40.0%
! TGTGATTTGCATGTTTCAGG+GGG - tig0010469:14849-14868 None:intergenic 40.0%
ATTCAAAGCACATGAAAGGG+GGG - tig0010469:15097-15116 None:intergenic 40.0%
! TGTTTTGTAGGTGTGCTTGA+AGG - tig0010469:15153-15172 None:intergenic 40.0%
TTGCCTAATGCTAACTCTCA+AGG - tig0010469:15216-15235 None:intergenic 40.0%
! TTTTGGATGATAGCCCAAAC+CGG + tig0010469:15401-15420 Msa1348480:intron 40.0%
GGCAAATCATGAGGAATATG+AGG - tig0010469:15796-15815 None:intergenic 40.0%
GAAAGAAGGCTTATATCGCT+TGG - tig0010469:15881-15900 None:intergenic 40.0%
GCGATATACAAACGGAAAGA+AGG - tig0010469:15895-15914 None:intergenic 40.0%
TGCAACAAGTGTGGTGAAAA+GGG - tig0010469:15951-15970 None:intergenic 40.0%
TTGCAACAAGTGTGGTGAAA+AGG - tig0010469:15952-15971 None:intergenic 40.0%
! TCACCACACTTGTTGCAATT+TGG + tig0010469:15954-15973 Msa1348480:intron 40.0%
!! CGTCTCATTGATAGTGAAGA+AGG - tig0010469:16041-16060 None:intergenic 40.0%
TTAGATGCTTGAGTCGAAGT+TGG - tig0010469:16163-16182 None:intergenic 40.0%
ACCCTTAAATTGACCCATGA+AGG - tig0010469:16359-16378 None:intergenic 40.0%
GTACAACCGCTAAGAAAATG+TGG - tig0010469:16385-16404 None:intergenic 40.0%
TCTTTGGTCCAAAGAGATCT+TGG + tig0010469:16494-16513 Msa1348480:intron 40.0%
! ATGGTGAAGGGTATGGTTAT+TGG - tig0010469:16631-16650 None:intergenic 40.0%
TCTTTCAATGGTGAAGGGTA+TGG - tig0010469:16638-16657 None:intergenic 40.0%
TACCCTTCACCATTGAAAGA+TGG + tig0010469:16638-16657 Msa1348480:intron 40.0%
ACCCTTCACCATTGAAAGAT+GGG + tig0010469:16639-16658 Msa1348480:intron 40.0%
AATTGTCCCCCATCTTTCAA+TGG - tig0010469:16650-16669 None:intergenic 40.0%
GAAAGATGGGGGACAATTTA+TGG + tig0010469:16652-16671 Msa1348480:intron 40.0%
TAAGGACTAATCGTCTCAAG+AGG - tig0010469:16701-16720 None:intergenic 40.0%
CAGAGCTTGAACTCTTGTTA+AGG - tig0010469:16719-16738 None:intergenic 40.0%
GAAGTCACTTGTTCAACAAG+TGG - tig0010469:16745-16764 None:intergenic 40.0%
AGTGACTTCAAACACACAAG+AGG + tig0010469:13497-13516 Msa1348480:intron 40.0%
GTGACTTCAAACACACAAGA+GGG + tig0010469:13498-13517 Msa1348480:intron 40.0%
TGACTTCAAACACACAAGAG+GGG + tig0010469:13499-13518 Msa1348480:intron 40.0%
TAGTTCGGCCTAAAACAACA+AGG + tig0010469:13706-13725 Msa1348480:intron 40.0%
!!! AGACTAGGCCTTGTTGTTTT+AGG - tig0010469:13717-13736 None:intergenic 40.0%
AGAGCAGTGAAAATCTCAAG+GGG - tig0010469:13756-13775 None:intergenic 40.0%
CTAGAGCAGTGAAAATCTCA+AGG - tig0010469:13758-13777 None:intergenic 40.0%
TCAAGAGAGGTGATATCTCT+TGG - tig0010469:13865-13884 None:intergenic 40.0%
TATCACCTCTCTTGAAACCT+TGG + tig0010469:13870-13889 Msa1348480:intron 40.0%
ATCACCTCTCTTGAAACCTT+GGG + tig0010469:13871-13890 Msa1348480:intron 40.0%
!!! AGGTGCATTGTTTTAGGTCT+TGG - tig0010469:14094-14113 None:intergenic 40.0%
ATGCCTTGACAGGAATACTT+TGG - tig0010469:14667-14686 None:intergenic 40.0%
TATGCAGTTTAGCACTCTCA+TGG - tig0010469:17964-17983 None:intergenic 40.0%
TTGAATCTTGTGTAGGGACT+TGG + tig0010469:18157-18176 Msa1348480:intron 40.0%
TGAATCTTGTGTAGGGACTT+GGG + tig0010469:18158-18177 Msa1348480:intron 40.0%
AGTAATCAGCAGGATTGAGT+GGG - tig0010469:18201-18220 None:intergenic 40.0%
AAGTAATCAGCAGGATTGAG+TGG - tig0010469:18202-18221 None:intergenic 40.0%
! AATGTGAGTATTGTGCGTTG+GGG - tig0010469:18350-18369 None:intergenic 40.0%
! GAAATGTGAGTATTGTGCGT+TGG - tig0010469:18352-18371 None:intergenic 40.0%
!! GTAAGAAGGCACTTCTAAAG+AGG - tig0010469:18388-18407 None:intergenic 40.0%
TGGCATAAAGGAGAGAAGAA+AGG + tig0010469:18485-18504 Msa1348480:CDS 40.0%
GATTACCTTGATCATGCAAG+TGG - tig0010469:18575-18594 None:intergenic 40.0%
! GAAGTTTGGAAGCATGTTTG+TGG - tig0010469:18683-18702 None:intergenic 40.0%
!! GTAACTTCAACTTGCTGCTA+TGG + tig0010469:18851-18870 Msa1348480:intron 40.0%
GTCCCAATGAGAAAAGTTGT+TGG + tig0010469:18994-19013 Msa1348480:three_prime_UTR 40.0%
AAACTATGAAGGGTTTCAGC+TGG + tig0010469:19084-19103 Msa1348480:three_prime_UTR 40.0%
TGATAAGGGTTCAAGTAGGA+TGG + tig0010469:19113-19132 Msa1348480:three_prime_UTR 40.0%
! GGCTTTATATGGAGAAGGTA+AGG + tig0010469:19183-19202 Msa1348480:three_prime_UTR 40.0%
! TTTTACGGGGAAGGTTAATC+TGG + tig0010469:19236-19255 Msa1348480:three_prime_UTR 40.0%
! TGATTTGGCCATTTAAGACC+AGG - tig0010469:19388-19407 None:intergenic 40.0%
GTTTCCAAGCTTACAAACCC+TGG - tig0010469:10607-10626 None:intergenic 45.0%
ATCTTCCTAGCAAAGCGAGA+TGG - tig0010469:10660-10679 None:intergenic 45.0%
TGGCATGTGGTAATCAGATC+TGG - tig0010469:10896-10915 None:intergenic 45.0%
TGAGACAAAGTTCAAGAGGG+TGG + tig0010469:11128-11147 Msa1348480:CDS 45.0%
GAGACAAAGTTCAAGAGGGT+GGG + tig0010469:11129-11148 Msa1348480:CDS 45.0%
GATGGAAGCCCGTATTATGA+AGG - tig0010469:12491-12510 None:intergenic 45.0%
CAATTGCTTGATTGTCCTGC+AGG - tig0010469:12728-12747 None:intergenic 45.0%
CATGCACTGCTTGTAGTTGA+GGG + tig0010469:13434-13453 Msa1348480:intron 45.0%
GACTTCAAACACACAAGAGG+GGG + tig0010469:13500-13519 Msa1348480:intron 45.0%
ACTTCAAACACACAAGAGGG+GGG + tig0010469:13501-13520 Msa1348480:intron 45.0%
! TTTTCCTTGGGGACTAGACT+AGG - tig0010469:13732-13751 None:intergenic 45.0%
! ATCTCAAGGGGCTTTTCCTT+GGG - tig0010469:13744-13763 None:intergenic 45.0%
! AATCTCAAGGGGCTTTTCCT+TGG - tig0010469:13745-13764 None:intergenic 45.0%
CTATCCCAAGGTTTCAAGAG+AGG - tig0010469:13878-13897 None:intergenic 45.0%
! TTGTATTGGGTGCTATCCCA+AGG - tig0010469:13890-13909 None:intergenic 45.0%
! TCACATAACTCTCCCCCTTT+TGG + tig0010469:14864-14883 Msa1348480:intron 45.0%
GGTCCTTGAGAGTTAGCATT+AGG + tig0010469:15210-15229 Msa1348480:intron 45.0%
!! TCACAAATCGCGGTCACTTT+TGG + tig0010469:16134-16153 Msa1348480:intron 45.0%
AGGTACTACCGAGGTCAAAA+GGG - tig0010469:16339-16358 None:intergenic 45.0%
! AAGGTACTACCGAGGTCAAA+AGG - tig0010469:16340-16359 None:intergenic 45.0%
! GGTGTCCCACATTTTCTTAG+CGG + tig0010469:16376-16395 Msa1348480:intron 45.0%
CCCCATCTTTCAATGGTGAA+GGG - tig0010469:16643-16662 None:intergenic 45.0%
CCCTTCACCATTGAAAGATG+GGG + tig0010469:16640-16659 Msa1348480:intron 45.0%
CCTTCACCATTGAAAGATGG+GGG + tig0010469:16641-16660 Msa1348480:intron 45.0%
GACTTCAAACACACAAGAGG+GGG + tig0010469:13500-13519 Msa1348480:intron 45.0%
ACTTCAAACACACAAGAGGG+GGG + tig0010469:13501-13520 Msa1348480:intron 45.0%
! TTTTCCTTGGGGACTAGACT+AGG - tig0010469:13732-13751 None:intergenic 45.0%
! ATCTCAAGGGGCTTTTCCTT+GGG - tig0010469:13744-13763 None:intergenic 45.0%
! AATCTCAAGGGGCTTTTCCT+TGG - tig0010469:13745-13764 None:intergenic 45.0%
CTATCCCAAGGTTTCAAGAG+AGG - tig0010469:13878-13897 None:intergenic 45.0%
! TTGTATTGGGTGCTATCCCA+AGG - tig0010469:13890-13909 None:intergenic 45.0%
GCAAGTGGTGAACTCTAAAC+AGG - tig0010469:18560-18579 None:intergenic 45.0%
GTTCACCACTTGCATGATCA+AGG + tig0010469:18567-18586 Msa1348480:three_prime_UTR 45.0%
CTTGCTGCTATGGAATCCTA+CGG + tig0010469:18861-18880 Msa1348480:intron 45.0%
TGCTATGGAATCCTACGGAT+TGG + tig0010469:18866-18885 Msa1348480:intron 45.0%
TATGAAGGGTTTCAGCTGGA+TGG + tig0010469:19088-19107 Msa1348480:three_prime_UTR 45.0%
TTCAGCTGGATGGCATGATA+AGG + tig0010469:19098-19117 Msa1348480:three_prime_UTR 45.0%
TCAGCTGGATGGCATGATAA+GGG + tig0010469:19099-19118 Msa1348480:three_prime_UTR 45.0%
GGCATGATAAGGGTTCAAGT+AGG + tig0010469:19109-19128 Msa1348480:three_prime_UTR 45.0%
! TCTCGGGCTTTATATGGAGA+AGG + tig0010469:19178-19197 Msa1348480:three_prime_UTR 45.0%
!! GCAGATCACCTGGTCTTAAA+TGG + tig0010469:19377-19396 Msa1348480:three_prime_UTR 45.0%
! TTCGCTGATGTGGCATTTTG+TGG - tig0010469:19524-19543 None:intergenic 45.0%
AAGCAACTGTTTCGCTGATG+TGG - tig0010469:19534-19553 None:intergenic 45.0%
! AAGCTAGGCCTGCATTTTTG+TGG - tig0010469:19611-19630 None:intergenic 45.0%
!!! AAAAATTGATATTTTAAATA+AGG - tig0010469:15640-15659 None:intergenic 5.0%
!! AATAAATAATTAAAATTTCT+CGG + tig0010469:19161-19180 Msa1348480:three_prime_UTR 5.0%
!! AAGAATTAAAAATATTAATT+AGG + tig0010469:19407-19426 Msa1348480:three_prime_UTR 5.0%
!!! ATTTAATTTTTATAAAATTG+TGG + tig0010469:19705-19724 Msa1348480:three_prime_UTR 5.0%
TATATGGGTGAGTGGCTTCC+AGG + tig0010469:10586-10605 Msa1348480:five_prime_UTR 50.0%
ATATGGGTGAGTGGCTTCCA+GGG + tig0010469:10587-10606 Msa1348480:five_prime_UTR 50.0%
GCTTCCAGGGTTTGTAAGCT+TGG + tig0010469:10600-10619 Msa1348480:five_prime_UTR 50.0%
TCATGCCATCTCGCTTTGCT+AGG + tig0010469:10652-10671 Msa1348480:five_prime_UTR 50.0%
TCATGATGTGTGTGTGTGGC+AGG + tig0010469:10703-10722 Msa1348480:five_prime_UTR 50.0%
!! CAAGAGGGTGGGTGTTTTTG+TGG + tig0010469:11140-11159 Msa1348480:CDS 50.0%
TGCTTGCTTACATGCTTGCC+TGG + tig0010469:11848-11867 Msa1348480:intron 50.0%
!! GTGATTTGGTTATTCGGGGG+AGG + tig0010469:12349-12368 Msa1348480:intron 50.0%
ATTCGGGGGAGGAAACTTGT+AGG + tig0010469:12360-12379 Msa1348480:intron 50.0%
CCTCAACTACAAGCAGTGCA+TGG - tig0010469:13436-13455 None:intergenic 50.0%
CCATGCACTGCTTGTAGTTG+AGG + tig0010469:13433-13452 Msa1348480:intron 50.0%
! TCTCAAGGGGCTTTTCCTTG+GGG - tig0010469:13743-13762 None:intergenic 50.0%
TTTGCATGTTTCAGGGGGAG+TGG - tig0010469:14844-14863 None:intergenic 50.0%
! GCATTAGGCAAAGTGCCCTT+TGG + tig0010469:15225-15244 Msa1348480:intron 50.0%
! CATTCGAGCCCTTTTGACCT+CGG + tig0010469:16328-16347 Msa1348480:intron 50.0%
TGACCTCGGTAGTACCTTCA+TGG + tig0010469:16342-16361 Msa1348480:intron 50.0%
GACCTCGGTAGTACCTTCAT+GGG + tig0010469:16343-16362 Msa1348480:intron 50.0%
CCCCCATCTTTCAATGGTGA+AGG - tig0010469:16644-16663 None:intergenic 50.0%
! TCTCAAGGGGCTTTTCCTTG+GGG - tig0010469:13743-13762 None:intergenic 50.0%
CCTCTTTGTCTCCAATCCGT+AGG - tig0010469:18880-18899 None:intergenic 50.0%
!! CCTACGGATTGGAGACAAAG+AGG + tig0010469:18877-18896 Msa1348480:intron 50.0%
! CTGTGTGGATTGTCAGAAGG+CGG - tig0010469:19332-19351 None:intergenic 50.0%
! AGCCTGTGTGGATTGTCAGA+AGG - tig0010469:19335-19354 None:intergenic 50.0%
AAGTGGATGATCAGCCTGTG+TGG - tig0010469:19347-19366 None:intergenic 50.0%
ACACAGGCTGATCATCCACT+TGG + tig0010469:19346-19365 Msa1348480:three_prime_UTR 50.0%
GATCTGCACTTCTCACCAAG+TGG - tig0010469:19364-19383 None:intergenic 50.0%
TGATGTGTGTGTGTGGCAGG+AGG + tig0010469:10706-10725 Msa1348480:five_prime_UTR 55.0%
GTGTGTGTGGCAGGAGGATA+TGG + tig0010469:10712-10731 Msa1348480:five_prime_UTR 55.0%
AAGGCCTAGTCTAGTCCCCA+AGG + tig0010469:13725-13744 Msa1348480:intron 55.0%
!! GACCCATGAAGGTACTACCG+AGG - tig0010469:16348-16367 None:intergenic 55.0%
AAGGCCTAGTCTAGTCCCCA+AGG + tig0010469:13725-13744 Msa1348480:intron 55.0%
GATTGTCAGAAGGCGGCAGA+GGG - tig0010469:19325-19344 None:intergenic 55.0%
CGCCTTCTGACAATCCACAC+AGG + tig0010469:19330-19349 Msa1348480:three_prime_UTR 55.0%
! GGTGAGAAGTGCAGATCACC+TGG + tig0010469:19367-19386 Msa1348480:three_prime_UTR 55.0%
GGATTGTCAGAAGGCGGCAG+AGG - tig0010469:19326-19345 None:intergenic 60.0%
AGAAGGCGGCAGAGGGCAGA+AGG - tig0010469:19318-19337 None:intergenic 65.0%
GCGGCAGAGGGCAGAAGGTG+TGG - tig0010469:19313-19332 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0010469 gene 10509 19898 10509 ID=Msa1348480;Name=Msa1348480
tig0010469 mRNA 10509 19898 10509 ID=Msa1348480-mRNA-1;Parent=Msa1348480;Name=Msa1348480-mRNA-1;_AED=0.31;_eAED=0.31;_QI=379|0.75|1|1|0.25|0|5|1046|69
tig0010469 exon 10509 10769 10509 ID=Msa1348480-mRNA-1:exon:6451;Parent=Msa1348480-mRNA-1
tig0010469 exon 10897 10997 10897 ID=Msa1348480-mRNA-1:exon:6452;Parent=Msa1348480-mRNA-1
tig0010469 exon 11097 11218 11097 ID=Msa1348480-mRNA-1:exon:6453;Parent=Msa1348480-mRNA-1
tig0010469 exon 18440 18588 18440 ID=Msa1348480-mRNA-1:exon:6454;Parent=Msa1348480-mRNA-1
tig0010469 exon 18897 19898 18897 ID=Msa1348480-mRNA-1:exon:6455;Parent=Msa1348480-mRNA-1
tig0010469 five_prime_UTR 10509 10769 10509 ID=Msa1348480-mRNA-1:five_prime_utr;Parent=Msa1348480-mRNA-1
tig0010469 five_prime_UTR 10897 10997 10897 ID=Msa1348480-mRNA-1:five_prime_utr;Parent=Msa1348480-mRNA-1
tig0010469 five_prime_UTR 11097 11113 11097 ID=Msa1348480-mRNA-1:five_prime_utr;Parent=Msa1348480-mRNA-1
tig0010469 CDS 11114 11218 11114 ID=Msa1348480-mRNA-1:cds;Parent=Msa1348480-mRNA-1
tig0010469 CDS 18440 18544 18440 ID=Msa1348480-mRNA-1:cds;Parent=Msa1348480-mRNA-1
tig0010469 three_prime_UTR 18545 18588 18545 ID=Msa1348480-mRNA-1:three_prime_utr;Parent=Msa1348480-mRNA-1
tig0010469 three_prime_UTR 18897 19898 18897 ID=Msa1348480-mRNA-1:three_prime_utr;Parent=Msa1348480-mRNA-1
Gene Sequence

>Msa1348480

ATGAAGACAAATAATGAGACAAAGTTCAAGAGGGTGGGTGTTTTTGTGGAAGTAGTCCTTGCGAGTAGCTATCAAGATACTGCCATTGAACTTGGAAATGAATTAGAGATTGTGGTAAAGATAACAAAGGATTACATCAAGGAGAGAATATGGCATAAAGGAGAGAAGAAAGGACCTGTTATTTATGGGAAGAAAGCACCTGAAATTTGA
Protein sequence

>Msa1348480

MKTNNETKFKRVGVFVEVVLASSYQDTAIELGNELEIVVKITKDYIKERIWHKGEKKGPVIYGKKAPEI*