Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802370 | XP_003612774.2 | 88.441 | 372 | 18 | 1 | 1 | 347 | 1 | 372 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802370 | sp|Q501B2|BZP16_ARATH | 59.221 | 385 | 113 | 8 | 1 | 352 | 1 | 374 | 3.64e-139 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802370 | G7KB04 | 88.441 | 372 | 18 | 1 | 1 | 347 | 1 | 372 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0802370 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0802370 | Msa0802650 | 0.851399 | 9.101980e-61 | -8.615850e-47 |
| Msa0802370 | Msa0802680 | 0.830880 | 2.288709e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802370 | MtrunA17_Chr5g0410531 | 88.441 | 372 | 18 | 1 | 1 | 347 | 1 | 372 | 0.0 | 664 |
| Msa0802370 | MtrunA17_Chr8g0369161 | 69.873 | 395 | 82 | 6 | 1 | 361 | 1 | 392 | 0.0 | 521 |
| Msa0802370 | MtrunA17_Chr7g0275321 | 38.264 | 311 | 158 | 11 | 39 | 347 | 67 | 345 | 3.80e-48 | 169 |
| Msa0802370 | MtrunA17_Chr8g0373571 | 37.380 | 313 | 139 | 11 | 39 | 347 | 65 | 324 | 3.28e-39 | 142 |
| Msa0802370 | MtrunA17_Chr8g0347741 | 32.850 | 414 | 186 | 16 | 1 | 370 | 1 | 366 | 3.16e-36 | 136 |
| Msa0802370 | MtrunA17_Chr7g0225661 | 38.710 | 93 | 52 | 2 | 255 | 347 | 59 | 146 | 3.02e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802370 | AT2G35530.1 | 59.221 | 385 | 113 | 8 | 1 | 352 | 1 | 374 | 3.70e-140 | 405 |
| Msa0802370 | AT1G32150.1 | 57.254 | 386 | 99 | 13 | 1 | 347 | 1 | 359 | 8.65e-124 | 363 |
| Msa0802370 | AT4G36730.1 | 37.107 | 318 | 112 | 12 | 39 | 353 | 62 | 294 | 1.62e-36 | 135 |
| Msa0802370 | AT4G36730.2 | 37.224 | 317 | 111 | 12 | 39 | 353 | 62 | 292 | 1.53e-35 | 132 |
| Msa0802370 | AT2G46270.1 | 32.345 | 371 | 150 | 14 | 19 | 346 | 10 | 322 | 3.68e-32 | 125 |
| Msa0802370 | AT2G46270.3 | 32.345 | 371 | 150 | 14 | 19 | 346 | 10 | 322 | 3.68e-32 | 125 |
| Msa0802370 | AT2G46270.2 | 29.191 | 346 | 171 | 13 | 19 | 346 | 10 | 299 | 2.69e-19 | 88.6 |
| Msa0802370 | AT2G46270.4 | 29.191 | 346 | 171 | 13 | 19 | 346 | 10 | 299 | 2.69e-19 | 88.6 |
| Msa0802370 | AT4G01120.1 | 44.211 | 95 | 49 | 2 | 275 | 369 | 243 | 333 | 2.15e-16 | 80.1 |
Find 161 sgRNAs with CRISPR-Local
Find 458 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGACTGGGCCAGCTTTC+AGG | 0.108461 | 5_3:-16667982 | Msa0802370:intron |
| GGTGCTCCTGGAGCTGTTTC+TGG | 0.143125 | 5_3:-16665279 | Msa0802370:CDS |
| ATTACCACTCAAAGAGAAAT+TGG | 0.187816 | 5_3:+16668732 | None:intergenic |
| TAAATATAGGAATGGATTAT+TGG | 0.223124 | 5_3:-16665242 | Msa0802370:CDS |
| GCGTAGGAAGAAGGTGAATT+TGG | 0.230889 | 5_3:+16668837 | None:intergenic |
| GTTGCGGGAGGGGTGGTTAC+TGG | 0.250650 | 5_3:-16665162 | Msa0802370:CDS |
| AGGATCATATACTGCATTTC+GGG | 0.276345 | 5_3:-16663192 | Msa0802370:CDS |
| TTCACTGATATATTAAAGTA+TGG | 0.280019 | 5_3:-16668194 | Msa0802370:exon |
| AAAGACGAAAGCAGTCTAAT+AGG | 0.280364 | 5_3:-16664059 | Msa0802370:CDS |
| TAGGATCATATACTGCATTT+CGG | 0.320801 | 5_3:-16663193 | Msa0802370:CDS |
| CACGCTCTTGCTATTGAGTT+AGG | 0.324581 | 5_3:+16663162 | None:intergenic |
| CAGCACATGATGCCTCCTTA+TGG | 0.341092 | 5_3:-16666824 | Msa0802370:CDS |
| GGTAGTTTGAACATGATTAC+AGG | 0.349225 | 5_3:-16666367 | Msa0802370:CDS |
| ACAGTAGGAGGGGTCAAAAT+TGG | 0.356551 | 5_3:+16668795 | None:intergenic |
| CCTATATTTAAGTTTGTTGC+GGG | 0.356569 | 5_3:+16665255 | None:intergenic |
| GGTTAAGAGTAAGACAAATT+AGG | 0.360801 | 5_3:+16663044 | None:intergenic |
| TACCTTGAGAGCTGCATTCT+CGG | 0.363000 | 5_3:+16663802 | None:intergenic |
| GGATCCTTCAGAGCTTGATT+TGG | 0.372607 | 5_3:+16668755 | None:intergenic |
| ATAGGGCTCTCAATTGAAAT+CGG | 0.373544 | 5_3:-16665557 | Msa0802370:intron |
| CGTAGGAAGAAGGTGAATTT+GGG | 0.375751 | 5_3:+16668838 | None:intergenic |
| CAAGAGCGTGATCTTTGTTT+CGG | 0.376014 | 5_3:-16663149 | Msa0802370:three_prime_UTR |
| AAAAGGTCAAAAGGAAGTTT+AGG | 0.381702 | 5_3:-16666388 | Msa0802370:CDS |
| GGAGCACCACTTGCCGAGAT+AGG | 0.387899 | 5_3:+16665294 | None:intergenic |
| AATAGGAACGAAAATCTAAC+TGG | 0.388651 | 5_3:-16669031 | Msa0802370:five_prime_UTR |
| ACAGGTGAACCATCTCAAAA+TGG | 0.390659 | 5_3:-16665393 | Msa0802370:intron |
| GCCTACCACAGTTGCGGGAG+GGG | 0.400697 | 5_3:-16665172 | Msa0802370:CDS |
| ATCTCGGCAAGTGGTGCTCC+TGG | 0.408534 | 5_3:-16665291 | Msa0802370:CDS |
| GTAGGCATGGCATAAGGATA+TGG | 0.411726 | 5_3:+16666625 | None:intergenic |
| CGTCACCTGCTTGCGCAACC+TGG | 0.412809 | 5_3:+16664020 | None:intergenic |
| TTACCACTCAAAGAGAAATT+GGG | 0.415228 | 5_3:+16668733 | None:intergenic |
| AAGACGAAAGCAGTCTAATA+GGG | 0.416680 | 5_3:-16664058 | Msa0802370:CDS |
| GTTCCGCCTACCACAGTTGC+GGG | 0.416901 | 5_3:-16665177 | Msa0802370:CDS |
| TAATGCGATTTACTTCTAAT+CGG | 0.420402 | 5_3:+16663849 | None:intergenic |
| TTCTGTATAAATAATTAGTC+GGG | 0.426906 | 5_3:-16662895 | Msa0802370:three_prime_UTR |
| GGTTGTGTAGGGTGGTCATT+AGG | 0.428162 | 5_3:-16663212 | Msa0802370:CDS |
| GATTAGAAGTAAATCGCATT+AGG | 0.437599 | 5_3:-16663847 | Msa0802370:CDS |
| CCTTCGACCGCCACTAGCAC+TGG | 0.444211 | 5_3:-16668014 | Msa0802370:CDS |
| CCCGCAACAAACTTAAATAT+AGG | 0.444449 | 5_3:-16665255 | Msa0802370:CDS |
| TAGGGCTCTCAATTGAAATC+GGG | 0.448319 | 5_3:-16665556 | Msa0802370:CDS |
| ACCTGAAAGCTGGCCCAGTC+AGG | 0.449948 | 5_3:+16667981 | None:intergenic |
| GGGAATCTGCTCGGAGATCC+AGG | 0.457769 | 5_3:-16664038 | Msa0802370:CDS |
| TCCTATATTTAAGTTTGTTG+CGG | 0.459038 | 5_3:+16665254 | None:intergenic |
| TAAGATTGAATTGATGAGAA+GGG | 0.463946 | 5_3:+16668905 | None:intergenic |
| AGTAAGACAAATTAGGAATG+AGG | 0.466421 | 5_3:+16663051 | None:intergenic |
| TTACCAATCAAAAGGTCAAA+AGG | 0.467960 | 5_3:-16666397 | Msa0802370:CDS |
| TTAATCTACAGGAGAGACTT+GGG | 0.468089 | 5_3:-16663288 | Msa0802370:intron |
| CCATCAGTTTCCATGCTGGC+AGG | 0.471564 | 5_3:+16666445 | None:intergenic |
| ACAGCGGGGACATCTGCTAA+TGG | 0.473912 | 5_3:-16666322 | Msa0802370:CDS |
| CAGTGCATACTTCACAAAAC+GGG | 0.474326 | 5_3:-16665365 | Msa0802370:CDS |
| TCAGTGCATACTTCACAAAA+CGG | 0.475143 | 5_3:-16665366 | Msa0802370:CDS |
| GGAACCTTTCCGCGGAGAGC+TGG | 0.479151 | 5_3:+16665195 | None:intergenic |
| TTTAATCTACAGGAGAGACT+TGG | 0.481648 | 5_3:-16663289 | Msa0802370:intron |
| ATGGGGATACATTGCAACAT+AGG | 0.481817 | 5_3:+16666787 | None:intergenic |
| TATGTCTGTCATTCCTATCT+CGG | 0.487110 | 5_3:-16665307 | Msa0802370:CDS |
| TCAGTCACAACTTTGGCTAC+AGG | 0.487817 | 5_3:-16665121 | Msa0802370:intron |
| GAGGCCTCAGCAATACCGTT+TGG | 0.488036 | 5_3:+16666601 | None:intergenic |
| GTTTGATTAACCACTGTATG+AGG | 0.491464 | 5_3:+16665330 | None:intergenic |
| AGCAGTGAATATACAGTAGG+AGG | 0.491527 | 5_3:+16668783 | None:intergenic |
| GGGTGGTTACTGGTGGATCA+CGG | 0.495283 | 5_3:-16665152 | Msa0802370:CDS |
| TTTCTGTATAAATAATTAGT+CGG | 0.497348 | 5_3:-16662896 | Msa0802370:three_prime_UTR |
| GCGGGGCCAGAAACAGCTCC+AGG | 0.501668 | 5_3:+16665273 | None:intergenic |
| CTGGAACAGTTAATCCTGAC+TGG | 0.502822 | 5_3:-16667995 | Msa0802370:CDS |
| GGTGGTTACTGGTGGATCAC+GGG | 0.504171 | 5_3:-16665151 | Msa0802370:CDS |
| TCGGGAAAATAATGAAAAGA+AGG | 0.505244 | 5_3:-16662877 | Msa0802370:three_prime_UTR |
| TCGTTACACATGTGTTGATC+TGG | 0.509480 | 5_3:+16663259 | None:intergenic |
| CTCTCCAAATCAAGCTCTGA+AGG | 0.511423 | 5_3:-16668759 | Msa0802370:five_prime_UTR |
| AATGAACATGGTAAAACAGC+GGG | 0.512685 | 5_3:-16666337 | Msa0802370:CDS |
| GAGATCCAGGTTGCGCAAGC+AGG | 0.513179 | 5_3:-16664025 | Msa0802370:intron |
| CGCCTACCACAGTTGCGGGA+GGG | 0.514482 | 5_3:-16665173 | Msa0802370:CDS |
| TGCTCATCCATCCATGCCTC+CGG | 0.520704 | 5_3:-16666753 | Msa0802370:intron |
| TCTAGTTAAAACCTGAAAGC+TGG | 0.527728 | 5_3:+16667971 | None:intergenic |
| GGTGAAAGTGGAAGTTATGA+AGG | 0.527913 | 5_3:-16665758 | Msa0802370:CDS |
| ATGATTACCGGAGGCATGGA+TGG | 0.528642 | 5_3:+16666746 | None:intergenic |
| GCGATTTACTTCTAATCGGA+GGG | 0.529909 | 5_3:+16663853 | None:intergenic |
| GGAACTCGTGGGTCGTCGTA+CGG | 0.531318 | 5_3:+16668995 | None:intergenic |
| TGGGGATACATTGCAACATA+GGG | 0.533477 | 5_3:+16666788 | None:intergenic |
| AGTAGCAGTGAATATACAGT+AGG | 0.533650 | 5_3:+16668780 | None:intergenic |
| AGTTATGAAGGTACTAGTGA+AGG | 0.533947 | 5_3:-16665746 | Msa0802370:CDS |
| ATAGTGTTCAGTCACAACTT+TGG | 0.537639 | 5_3:-16665128 | Msa0802370:CDS |
| TTTGGAGTAGGCATGGCATA+AGG | 0.540351 | 5_3:+16666619 | None:intergenic |
| TGCGATTTACTTCTAATCGG+AGG | 0.542152 | 5_3:+16663852 | None:intergenic |
| GTAAGACAAATTAGGAATGA+GGG | 0.542380 | 5_3:+16663052 | None:intergenic |
| GGAAATTGAGCGTAGGAAGA+AGG | 0.545805 | 5_3:+16668828 | None:intergenic |
| GGATGTGGTGGAGTACCATA+AGG | 0.547567 | 5_3:+16666809 | None:intergenic |
| GACAATGATTACCGGAGGCA+TGG | 0.549201 | 5_3:+16666742 | None:intergenic |
| TTTACCATCAGTTTCCATGC+TGG | 0.549293 | 5_3:+16666441 | None:intergenic |
| ATCCCCAATTTCTCTTTGAG+TGG | 0.549840 | 5_3:-16668736 | Msa0802370:intron |
| TACCACAGTTGCGGGAGGGG+TGG | 0.550163 | 5_3:-16665169 | Msa0802370:CDS |
| GGGAAACACTCCTGCCAGCA+TGG | 0.550438 | 5_3:-16666455 | Msa0802370:CDS |
| TATGCCATGCCTACTCCAAA+CGG | 0.550779 | 5_3:-16666616 | Msa0802370:CDS |
| CTCAATTAGACCTGTGATGT+TGG | 0.552139 | 5_3:+16668118 | None:intergenic |
| ACTCGTGGGTCGTCGTACGG+TGG | 0.552979 | 5_3:+16668998 | None:intergenic |
| TTAAGATTGAATTGATGAGA+AGG | 0.554419 | 5_3:+16668904 | None:intergenic |
| GTTAATGTGTTTGTTGTTCG+CGG | 0.554514 | 5_3:+16668969 | None:intergenic |
| TCACTGATATATTAAAGTAT+GGG | 0.555082 | 5_3:-16668193 | Msa0802370:exon |
| CCGCCTACCACAGTTGCGGG+AGG | 0.555210 | 5_3:-16665174 | Msa0802370:CDS |
| TTCCGAGAATGCAGCTCTCA+AGG | 0.555646 | 5_3:-16663804 | Msa0802370:CDS |
| TGGACAGACAGAGGTTGTGT+AGG | 0.557553 | 5_3:-16663224 | Msa0802370:CDS |
| GCAGTGAATATACAGTAGGA+GGG | 0.561436 | 5_3:+16668784 | None:intergenic |
| TCCGCGGAGAGCTGGAATGT+TGG | 0.563596 | 5_3:+16665203 | None:intergenic |
| CCAGTGCTAGTGGCGGTCGA+AGG | 0.566554 | 5_3:+16668014 | None:intergenic |
| GACACCACCACCAACATCAC+AGG | 0.567614 | 5_3:-16668128 | Msa0802370:intron |
| GCGGGAGGGGTGGTTACTGG+TGG | 0.570321 | 5_3:-16665159 | Msa0802370:CDS |
| ACCCCTCCCGCAACTGTGGT+AGG | 0.571144 | 5_3:+16665171 | None:intergenic |
| CTCGTGGGTCGTCGTACGGT+GGG | 0.572804 | 5_3:+16668999 | None:intergenic |
| AAGATTGAATTGATGAGAAG+GGG | 0.573809 | 5_3:+16668906 | None:intergenic |
| CATTCCAGCTCTCCGCGGAA+AGG | 0.573853 | 5_3:-16665199 | Msa0802370:CDS |
| TGGTAAACCTCCTGAAGTGA+AGG | 0.575107 | 5_3:-16666425 | Msa0802370:CDS |
| TGGATTTGCAGTGGTGAAAG+TGG | 0.577589 | 5_3:-16665770 | Msa0802370:intron |
| GCTGGAATGTTGGATGAAGT+TGG | 0.578954 | 5_3:+16665213 | None:intergenic |
| AAGTATGGGCAATAATGAGA+TGG | 0.579789 | 5_3:-16668179 | Msa0802370:exon |
| AGCAATATAATTAATGTACC+TGG | 0.580685 | 5_3:-16662936 | Msa0802370:three_prime_UTR |
| TACATTGCAACATAGGGATG+TGG | 0.580807 | 5_3:+16666794 | None:intergenic |
| CTAATGGAATTCACTCAAAG+AGG | 0.581180 | 5_3:-16666306 | Msa0802370:intron |
| TAGACCTGTGATGTTGGTGG+TGG | 0.584496 | 5_3:+16668124 | None:intergenic |
| GGACAGACAGAGGTTGTGTA+GGG | 0.586042 | 5_3:-16663223 | Msa0802370:CDS |
| AACAAACTTAAATATAGGAA+TGG | 0.588482 | 5_3:-16665250 | Msa0802370:CDS |
| GGATAAAACAGCAAAAGAGA+AGG | 0.588848 | 5_3:-16668158 | Msa0802370:CDS |
| ATTAACTGTTCCAGTGCTAG+TGG | 0.593825 | 5_3:+16668004 | None:intergenic |
| TACCACTCAAAGAGAAATTG+GGG | 0.600205 | 5_3:+16668734 | None:intergenic |
| AACCACCCCTCCCGCAACTG+TGG | 0.605113 | 5_3:+16665167 | None:intergenic |
| TCAGCAATACCGTTTGGAGT+AGG | 0.605905 | 5_3:+16666607 | None:intergenic |
| GATGAGCATATATGCCACCA+TGG | 0.610974 | 5_3:+16666768 | None:intergenic |
| GTCATTCCTATCTCGGCAAG+TGG | 0.611010 | 5_3:-16665300 | Msa0802370:CDS |
| ATTGCAACATAGGGATGTGG+TGG | 0.613657 | 5_3:+16666797 | None:intergenic |
| AACTGTTCCAGTGCTAGTGG+CGG | 0.616899 | 5_3:+16668007 | None:intergenic |
| TGTGTTTGTTGTTCGCGGAG+AGG | 0.619030 | 5_3:+16668974 | None:intergenic |
| AGATTGAATTGATGAGAAGG+GGG | 0.621107 | 5_3:+16668907 | None:intergenic |
| AGGGCTCTCAATTGAAATCG+GGG | 0.621854 | 5_3:-16665555 | Msa0802370:CDS |
| GTAGTTTGAACATGATTACA+GGG | 0.624590 | 5_3:-16666366 | Msa0802370:CDS |
| CCTGCCAGCATGGAAACTGA+TGG | 0.625964 | 5_3:-16666445 | Msa0802370:CDS |
| TGGAACAGTTAATCCTGACT+GGG | 0.626947 | 5_3:-16667994 | Msa0802370:CDS |
| ATGAGCATATATGCCACCAT+GGG | 0.627162 | 5_3:+16666769 | None:intergenic |
| TACTCCAAACGGTATTGCTG+AGG | 0.632684 | 5_3:-16666605 | Msa0802370:CDS |
| GGTTCCGCCTACCACAGTTG+CGG | 0.633178 | 5_3:-16665178 | Msa0802370:CDS |
| AATACCGTTTGGAGTAGGCA+TGG | 0.637188 | 5_3:+16666612 | None:intergenic |
| TGTTCGCGGAGAGGAACTCG+TGG | 0.639993 | 5_3:+16668983 | None:intergenic |
| AATTAGACCTGTGATGTTGG+TGG | 0.642546 | 5_3:+16668121 | None:intergenic |
| TGTAACGACAGTCAACAAAG+TGG | 0.642893 | 5_3:-16663244 | Msa0802370:CDS |
| CCTCCCGCAACTGTGGTAGG+CGG | 0.645977 | 5_3:+16665174 | None:intergenic |
| GGGCTCTCAATTGAAATCGG+GGG | 0.646202 | 5_3:-16665554 | Msa0802370:CDS |
| ACTTAATGCACCTCATACAG+TGG | 0.648863 | 5_3:-16665340 | Msa0802370:CDS |
| TAATCTACAGGAGAGACTTG+GGG | 0.650587 | 5_3:-16663287 | Msa0802370:intron |
| CAGACAGAGGTTGTGTAGGG+TGG | 0.650795 | 5_3:-16663220 | Msa0802370:CDS |
| GTTCGCGGAGAGGAACTCGT+GGG | 0.656197 | 5_3:+16668984 | None:intergenic |
| TAACCCCATTCAAAACAACA+TGG | 0.656770 | 5_3:-16663026 | Msa0802370:three_prime_UTR |
| TATGTTGCAATGTATCCCCA+TGG | 0.658872 | 5_3:-16666785 | Msa0802370:CDS |
| TCAACAAAGTGGACAGACAG+AGG | 0.662687 | 5_3:-16663233 | Msa0802370:CDS |
| CTATATTTAAGTTTGTTGCG+GGG | 0.664908 | 5_3:+16665256 | None:intergenic |
| AGTCTAATAGGGAATCTGCT+CGG | 0.674381 | 5_3:-16664047 | Msa0802370:CDS |
| AGTGCATACTTCACAAAACG+GGG | 0.677950 | 5_3:-16665364 | Msa0802370:CDS |
| CAGTGAATATACAGTAGGAG+GGG | 0.682502 | 5_3:+16668785 | None:intergenic |
| TGTGGTGGAGTACCATAAGG+AGG | 0.685282 | 5_3:+16666812 | None:intergenic |
| TAATGAACATGGTAAAACAG+CGG | 0.688598 | 5_3:-16666338 | Msa0802370:CDS |
| TGGTAGGCGGAACCTTTCCG+CGG | 0.697382 | 5_3:+16665187 | None:intergenic |
| ATTTATATAATGAACACACC+AGG | 0.707482 | 5_3:+16662918 | None:intergenic |
| TCCAACATTCCAGCTCTCCG+CGG | 0.711616 | 5_3:-16665204 | Msa0802370:CDS |
| TGAGCATATATGCCACCATG+GGG | 0.728314 | 5_3:+16666770 | None:intergenic |
| GTTGCAATGTATCCCCATGG+TGG | 0.737517 | 5_3:-16666782 | Msa0802370:CDS |
| GTGCATACTTCACAAAACGG+GGG | 0.753458 | 5_3:-16665363 | Msa0802370:CDS |
| ATGAACATGGTAAAACAGCG+GGG | 0.756524 | 5_3:-16666336 | Msa0802370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATCATAAATATAAAG+CGG | - | chr5_3:16664449-16664468 | Msa0802370:intron | 10.0% |
| !! | GAGTAAAAAATTATTAATAA+TGG | + | chr5_3:16667737-16667756 | None:intergenic | 10.0% |
| !! | ATATAAATGTTTAAATAAAG+AGG | + | chr5_3:16667759-16667778 | None:intergenic | 10.0% |
| !!! | ATTTAAACATTTATATTTTC+TGG | - | chr5_3:16667763-16667782 | Msa0802370:intron | 10.0% |
| !!! | TAAAATCAAAATTGGATTTT+TGG | - | chr5_3:16663360-16663379 | Msa0802370:intron | 15.0% |
| !!! | TTTTGTTTTATCTATATTGA+TGG | - | chr5_3:16663787-16663806 | Msa0802370:intron | 15.0% |
| !!! | ACACTATTTTCTATTATTTA+CGG | - | chr5_3:16663941-16663960 | Msa0802370:intron | 15.0% |
| !!! | TTGTAAATTGACTTATAATT+TGG | - | chr5_3:16664300-16664319 | Msa0802370:intron | 15.0% |
| !!! | TGTAAATTGACTTATAATTT+GGG | - | chr5_3:16664301-16664320 | Msa0802370:intron | 15.0% |
| !! | AATCAGATAAAAATGTTAAA+AGG | + | chr5_3:16665880-16665899 | None:intergenic | 15.0% |
| !!! | TTTTGTATTTGTGTTTTTAT+AGG | - | chr5_3:16666303-16666322 | Msa0802370:intron | 15.0% |
| !!! | TTTGTATTTGTGTTTTTATA+GGG | - | chr5_3:16666304-16666323 | Msa0802370:intron | 15.0% |
| !!! | ACTTATTTGAGTTTATTTAT+TGG | - | chr5_3:16668293-16668312 | Msa0802370:intron | 15.0% |
| !! | TTTCTGTATAAATAATTAGT+CGG | - | chr5_3:16668982-16669001 | Msa0802370:five_prime_UTR | 15.0% |
| !!! | TTTGTGAAAATTTTGATCTT+AGG | + | chr5_3:16663004-16663023 | None:intergenic | 20.0% |
| !!! | TCAATTTCACTTTTTATCTT+TGG | - | chr5_3:16663256-16663275 | Msa0802370:CDS | 20.0% |
| !!! | ATAATTGAATTTGCTATGTT+GGG | - | chr5_3:16663318-16663337 | Msa0802370:intron | 20.0% |
| !! | ACATAGAGTAAAATCAAAAT+TGG | - | chr5_3:16663352-16663371 | Msa0802370:intron | 20.0% |
| !! | TTCACTGATATATTAAAGTA+TGG | - | chr5_3:16663684-16663703 | Msa0802370:intron | 20.0% |
| !! | TCACTGATATATTAAAGTAT+GGG | - | chr5_3:16663685-16663704 | Msa0802370:intron | 20.0% |
| !!! | TTATCTATATTGATGGTTAA+TGG | - | chr5_3:16663794-16663813 | Msa0802370:intron | 20.0% |
| !!! | GGTTTTAACTAGAATTTTTT+TGG | - | chr5_3:16663917-16663936 | Msa0802370:intron | 20.0% |
| !!! | GAAACATAGTTAATTTTGTA+TGG | - | chr5_3:16664142-16664161 | Msa0802370:intron | 20.0% |
| !! | GCTAAATTAAAAGAATTAGA+AGG | - | chr5_3:16664222-16664241 | Msa0802370:intron | 20.0% |
| !!! | AAGGAGTATTAAATAGTAAA+GGG | - | chr5_3:16664241-16664260 | Msa0802370:intron | 20.0% |
| !! | CTTTATTGAAATTGTCTATT+TGG | + | chr5_3:16664429-16664448 | None:intergenic | 20.0% |
| !! | ACATATCAATTAAAATTTCC+CGG | - | chr5_3:16664643-16664662 | Msa0802370:intron | 20.0% |
| !!! | AGTTATTTCCATTCATTATT+GGG | + | chr5_3:16664838-16664857 | None:intergenic | 20.0% |
| !!! | AAAATGAATAATTCAGGTTT+TGG | - | chr5_3:16664872-16664891 | Msa0802370:intron | 20.0% |
| !! | TAAATGAACCAAATAAAACA+CGG | + | chr5_3:16665019-16665038 | None:intergenic | 20.0% |
| !!! | TGCAATTTTTGATTACATTA+TGG | - | chr5_3:16665903-16665922 | Msa0802370:intron | 20.0% |
| !!! | GCAATTTTTGATTACATTAT+GGG | - | chr5_3:16665904-16665923 | Msa0802370:intron | 20.0% |
| !!! | TATGTTTTTTCAACTATCAT+AGG | - | chr5_3:16666280-16666299 | Msa0802370:intron | 20.0% |
| !! | GTGAAAATTAGAAACTATAT+TGG | + | chr5_3:16666397-16666416 | None:intergenic | 20.0% |
| !! | AACAAACTTAAATATAGGAA+TGG | - | chr5_3:16666628-16666647 | Msa0802370:CDS | 20.0% |
| !!! | TAAATATAGGAATGGATTAT+TGG | - | chr5_3:16666636-16666655 | Msa0802370:CDS | 20.0% |
| !!! | ACTAAAATACAACTTTTATG+AGG | + | chr5_3:16667261-16667280 | None:intergenic | 20.0% |
| !!! | AAAGTTGTATTTTAGTGAAT+AGG | - | chr5_3:16667265-16667284 | Msa0802370:intron | 20.0% |
| !! | TAATTCTAAATTTGTAAGTG+GGG | + | chr5_3:16667509-16667528 | None:intergenic | 20.0% |
| !! | GTAATTCTAAATTTGTAAGT+GGG | + | chr5_3:16667510-16667529 | None:intergenic | 20.0% |
| !! | AGTAATTCTAAATTTGTAAG+TGG | + | chr5_3:16667511-16667530 | None:intergenic | 20.0% |
| !!! | ATATTTTCTGGTTAACTTTT+AGG | - | chr5_3:16667775-16667794 | Msa0802370:intron | 20.0% |
| !!! | TGTATGCTTTTTTTGTTAAA+AGG | - | chr5_3:16668111-16668130 | Msa0802370:intron | 20.0% |
| !! | TGAACATTTACTAAAAAAAG+AGG | + | chr5_3:16668208-16668227 | None:intergenic | 20.0% |
| !! | ATATAAGAAATGATAAATCC+TGG | + | chr5_3:16668409-16668428 | None:intergenic | 20.0% |
| !! | GATGTTAAGTCAAATAATTA+TGG | + | chr5_3:16668565-16668584 | None:intergenic | 20.0% |
| !! | TTCTGTATAAATAATTAGTC+GGG | - | chr5_3:16668983-16669002 | Msa0802370:five_prime_UTR | 20.0% |
| !! | ATCAAAAATTAGGGTTTGTT+GGG | + | chr5_3:16662934-16662953 | None:intergenic | 25.0% |
| ! | TAAGATTGAATTGATGAGAA+GGG | + | chr5_3:16662976-16662995 | None:intergenic | 25.0% |
| ! | TTAAGATTGAATTGATGAGA+AGG | + | chr5_3:16662977-16662996 | None:intergenic | 25.0% |
| !!! | CAGCTTTATTTGCTTTTAAT+TGG | - | chr5_3:16663182-16663201 | Msa0802370:exon | 25.0% |
| !!! | GATAATTGAATTTGCTATGT+TGG | - | chr5_3:16663317-16663336 | Msa0802370:intron | 25.0% |
| !! | AGAATATGCCTATACAATTT+TGG | + | chr5_3:16663991-16664010 | None:intergenic | 25.0% |
| !!! | GTTTCTTAATTTGTGTGAAA+TGG | + | chr5_3:16664127-16664146 | None:intergenic | 25.0% |
| !!! | GAAGGAGTATTAAATAGTAA+AGG | - | chr5_3:16664240-16664259 | Msa0802370:intron | 25.0% |
| !! | GAGTTATTTCCATTCATTAT+TGG | + | chr5_3:16664839-16664858 | None:intergenic | 25.0% |
| !! | CTGAATTATTCATTTTGTAG+TGG | + | chr5_3:16664868-16664887 | None:intergenic | 25.0% |
| ! | CACTACAAAATGAATAATTC+AGG | - | chr5_3:16664866-16664885 | Msa0802370:intron | 25.0% |
| ! | AGAAGACTAATAAATAGTTG+AGG | + | chr5_3:16664899-16664918 | None:intergenic | 25.0% |
| ! | AAATGAACCAAATAAAACAC+GGG | + | chr5_3:16665018-16665037 | None:intergenic | 25.0% |
| ! | TCATAATTGACAATGATTAC+CGG | + | chr5_3:16665147-16665166 | None:intergenic | 25.0% |
| ! | CATTGTCAATTATGATTTCA+TGG | - | chr5_3:16665152-16665171 | Msa0802370:CDS | 25.0% |
| !!! | ACTTTTTCCCTACTTATATA+AGG | + | chr5_3:16665385-16665404 | None:intergenic | 25.0% |
| ! | AGGAAAAATTACCAATCAAA+AGG | - | chr5_3:16665473-16665492 | Msa0802370:intron | 25.0% |
| !!! | ACACCAGAAAAAGTTTTAAT+AGG | + | chr5_3:16665709-16665728 | None:intergenic | 25.0% |
| ! | ATACACAACATATTGAATCA+TGG | + | chr5_3:16665780-16665799 | None:intergenic | 25.0% |
| !!! | TATCAATGTTTTTGCTCTAT+TGG | - | chr5_3:16666034-16666053 | Msa0802370:intron | 25.0% |
| !! | TACCTTTTCTATTGAATTAC+AGG | - | chr5_3:16666467-16666486 | Msa0802370:intron | 25.0% |
| !!! | TCCTATATTTAAGTTTGTTG+CGG | + | chr5_3:16666627-16666646 | None:intergenic | 25.0% |
| ! | TAATACAGTCACAATTTGAA+AGG | + | chr5_3:16666937-16666956 | None:intergenic | 25.0% |
| !! | AATACACTTGCTAAAAAACA+AGG | + | chr5_3:16667004-16667023 | None:intergenic | 25.0% |
| ! | AAATAGTGTGTTTATATGGT+GGG | + | chr5_3:16667079-16667098 | None:intergenic | 25.0% |
| ! | AAAATAGTGTGTTTATATGG+TGG | + | chr5_3:16667080-16667099 | None:intergenic | 25.0% |
| ! | GACAAAATAGTGTGTTTATA+TGG | + | chr5_3:16667083-16667102 | None:intergenic | 25.0% |
| !! | TAAACACACTATTTTGTCTA+TGG | - | chr5_3:16667085-16667104 | Msa0802370:intron | 25.0% |
| ! | TAGTATTGTACATGTATGTT+TGG | - | chr5_3:16667326-16667345 | Msa0802370:intron | 25.0% |
| ! | AGTATTGTACATGTATGTTT+GGG | - | chr5_3:16667327-16667346 | Msa0802370:intron | 25.0% |
| !!! | TTAAGGTTTTAATAGCTTGT+AGG | - | chr5_3:16667599-16667618 | Msa0802370:intron | 25.0% |
| !! | ACATTGCAAGTTATTGATTA+TGG | + | chr5_3:16667670-16667689 | None:intergenic | 25.0% |
| ! | TAATGCGATTTACTTCTAAT+CGG | + | chr5_3:16668032-16668051 | None:intergenic | 25.0% |
| ! | AGGAATGAAAAGTTTAAAGA+AGG | - | chr5_3:16668131-16668150 | Msa0802370:CDS | 25.0% |
| ! | GGAATGAAAAGTTTAAAGAA+GGG | - | chr5_3:16668132-16668151 | Msa0802370:CDS | 25.0% |
| ! | ATATTAAGGAAATCTACGAA+TGG | + | chr5_3:16668531-16668550 | None:intergenic | 25.0% |
| ! | TAGATTTCCTTAATATGTGA+AGG | - | chr5_3:16668535-16668554 | Msa0802370:intron | 25.0% |
| ! | AACATCAAGATTTAATCTAC+AGG | - | chr5_3:16668579-16668598 | Msa0802370:intron | 25.0% |
| !!! | GGTCTTTTTAAGACTATAAT+AGG | + | chr5_3:16668787-16668806 | None:intergenic | 25.0% |
| ! | GGATCATATAACATAAAAAC+AGG | + | chr5_3:16668808-16668827 | None:intergenic | 25.0% |
| ! | AGCAATATAATTAATGTACC+TGG | - | chr5_3:16668942-16668961 | Msa0802370:five_prime_UTR | 25.0% |
| ! | ATTTATATAATGAACACACC+AGG | + | chr5_3:16668963-16668982 | None:intergenic | 25.0% |
| GATCAAAAATTAGGGTTTGT+TGG | + | chr5_3:16662935-16662954 | None:intergenic | 30.0% | |
| TGGGGATAGATCAAAAATTA+GGG | + | chr5_3:16662943-16662962 | None:intergenic | 30.0% | |
| TTGGGGATAGATCAAAAATT+AGG | + | chr5_3:16662944-16662963 | None:intergenic | 30.0% | |
| AAGATTGAATTGATGAGAAG+GGG | + | chr5_3:16662975-16662994 | None:intergenic | 30.0% | |
| GTCAAAATTGGCAAGAAAAA+TGG | + | chr5_3:16663074-16663093 | None:intergenic | 30.0% | |
| TTACCACTCAAAGAGAAATT+GGG | + | chr5_3:16663148-16663167 | None:intergenic | 30.0% | |
| ATTACCACTCAAAGAGAAAT+TGG | + | chr5_3:16663149-16663168 | None:intergenic | 30.0% | |
| !!! | TCATCTTGATTTTCTAGCTT+TGG | - | chr5_3:16663281-16663300 | Msa0802370:intron | 30.0% |
| ! | TGGATGATTTTGCAATGATT+AGG | - | chr5_3:16663380-16663399 | Msa0802370:intron | 30.0% |
| ! | ATGATTTTGCAATGATTAGG+AGG | - | chr5_3:16663383-16663402 | Msa0802370:intron | 30.0% |
| ! | TGATTTTGCAATGATTAGGA+GGG | - | chr5_3:16663384-16663403 | Msa0802370:intron | 30.0% |
| CATAGTTAACTTTACAGTTG+TGG | - | chr5_3:16663548-16663567 | Msa0802370:intron | 30.0% | |
| AACTTTACAGTTGTGGAATT+CGG | - | chr5_3:16663555-16663574 | Msa0802370:intron | 30.0% | |
| ATTTCGAATGAGAATGAGTA+TGG | - | chr5_3:16663591-16663610 | Msa0802370:intron | 30.0% | |
| ! | GTTATGTGTATTTTGCAGAA+TGG | - | chr5_3:16663641-16663660 | Msa0802370:intron | 30.0% |
| !! | GAAGCATTTATTGTTTTTCC+AGG | - | chr5_3:16663836-16663855 | Msa0802370:CDS | 30.0% |
| ! | TGACTTATAATTTGTGACAG+AGG | + | chr5_3:16664098-16664117 | None:intergenic | 30.0% |
| ATTATCCTTCATTAACTACG+TGG | - | chr5_3:16664195-16664214 | Msa0802370:intron | 30.0% | |
| TTATCCTTCATTAACTACGT+GGG | - | chr5_3:16664196-16664215 | Msa0802370:intron | 30.0% | |
| ! | TAAATAGTAAAGGGTGTGAT+AGG | - | chr5_3:16664250-16664269 | Msa0802370:intron | 30.0% |
| GATATGTATAATTGCATGCA+TGG | + | chr5_3:16664630-16664649 | None:intergenic | 30.0% | |
| ATTGTATTCCTTAAGCTCTA+AGG | + | chr5_3:16664752-16664771 | None:intergenic | 30.0% | |
| TTGAAACTCCCAATAATGAA+TGG | - | chr5_3:16664827-16664846 | Msa0802370:intron | 30.0% | |
| ! | AACAAGATATTTTGTACTGC+TGG | + | chr5_3:16664985-16665004 | None:intergenic | 30.0% |
| TAATTGCGGAAAATTTACAC+AGG | - | chr5_3:16665222-16665241 | Msa0802370:CDS | 30.0% | |
| AATTGCGGAAAATTTACACA+GGG | - | chr5_3:16665223-16665242 | Msa0802370:CDS | 30.0% | |
| TTACCAATCAAAAGGTCAAA+AGG | - | chr5_3:16665481-16665500 | Msa0802370:intron | 30.0% | |
| AAAAGGTCAAAAGGAAGTTT+AGG | - | chr5_3:16665490-16665509 | Msa0802370:intron | 30.0% | |
| GTAGTTTGAACATGATTACA+GGG | - | chr5_3:16665512-16665531 | Msa0802370:intron | 30.0% | |
| ACAGGGAAAAATAATGAACA+TGG | - | chr5_3:16665529-16665548 | Msa0802370:intron | 30.0% | |
| TAATGAACATGGTAAAACAG+CGG | - | chr5_3:16665540-16665559 | Msa0802370:CDS | 30.0% | |
| ! | TCACTCAAAGAGGTAAATTT+TGG | - | chr5_3:16665582-16665601 | Msa0802370:intron | 30.0% |
| TACTGTTCGATGAAAAAGAA+TGG | + | chr5_3:16665640-16665659 | None:intergenic | 30.0% | |
| !! | GTGCCTATTAAAACTTTTTC+TGG | - | chr5_3:16665703-16665722 | Msa0802370:intron | 30.0% |
| TTATCATTCTGTAGGGATAT+GGG | + | chr5_3:16665823-16665842 | None:intergenic | 30.0% | |
| TTAAAAGGATGACACATGAT+AGG | + | chr5_3:16665865-16665884 | None:intergenic | 30.0% | |
| TATTTATCTCCTAATGCATG+AGG | - | chr5_3:16665977-16665996 | Msa0802370:intron | 30.0% | |
| ! | TATTTGCCATTTGCAAATTC+TGG | - | chr5_3:16666062-16666081 | Msa0802370:intron | 30.0% |
| AAATTGCCAGAATTTGCAAA+TGG | + | chr5_3:16666071-16666090 | None:intergenic | 30.0% | |
| ! | TTTATGCTGATTGGTATTCT+TGG | - | chr5_3:16666088-16666107 | Msa0802370:intron | 30.0% |
| TTCTAACACACATACATCAT+GGG | + | chr5_3:16666438-16666457 | None:intergenic | 30.0% | |
| CACCTGTAATTCAATAGAAA+AGG | + | chr5_3:16666472-16666491 | None:intergenic | 30.0% | |
| !! | CTATATTTAAGTTTGTTGCG+GGG | + | chr5_3:16666625-16666644 | None:intergenic | 30.0% |
| !! | CCTATATTTAAGTTTGTTGC+GGG | + | chr5_3:16666626-16666645 | None:intergenic | 30.0% |
| AAAGCATAAACATCATTGGT+CGG | + | chr5_3:16666799-16666818 | None:intergenic | 30.0% | |
| ! | ATCGAAAGCATAAACATCAT+TGG | + | chr5_3:16666803-16666822 | None:intergenic | 30.0% |
| TATGTTGAATGTAAGCAAGA+GGG | + | chr5_3:16666883-16666902 | None:intergenic | 30.0% | |
| AACATACGATGCTTTATGTT+TGG | - | chr5_3:16666897-16666916 | Msa0802370:intron | 30.0% | |
| ! | AATTACACACATTTTCATCG+AGG | - | chr5_3:16667029-16667048 | Msa0802370:intron | 30.0% |
| AGCTCATCAAAAATTGTCTA+TGG | - | chr5_3:16667120-16667139 | Msa0802370:intron | 30.0% | |
| ! | TGATAATCAGTGCTGTTAAA+TGG | + | chr5_3:16667190-16667209 | None:intergenic | 30.0% |
| TGTGACACTTATTAAAAGCT+TGG | - | chr5_3:16667298-16667317 | Msa0802370:intron | 30.0% | |
| GTATTGTACATGTATGTTTG+GGG | - | chr5_3:16667328-16667347 | Msa0802370:intron | 30.0% | |
| TGTGAAGTTATGTTTGTCAT+TGG | - | chr5_3:16667370-16667389 | Msa0802370:intron | 30.0% | |
| AAAACTTCTCTATCTGAGAA+AGG | + | chr5_3:16667565-16667584 | None:intergenic | 30.0% | |
| ! | TTCTCAGATAGAGAAGTTTT+AGG | - | chr5_3:16667565-16667584 | Msa0802370:intron | 30.0% |
| TTTAGGTAATCCACAGTTTA+AGG | - | chr5_3:16667582-16667601 | Msa0802370:intron | 30.0% | |
| GCTATTAAAACCTTAAACTG+TGG | + | chr5_3:16667595-16667614 | None:intergenic | 30.0% | |
| GATTAGAAGTAAATCGCATT+AGG | - | chr5_3:16668031-16668050 | Msa0802370:intron | 30.0% | |
| ! | ACTACATTTGATTGTCGATT+CGG | - | chr5_3:16668246-16668265 | Msa0802370:intron | 30.0% |
| AAGTACTTGTGAGAATGTAA+GGG | - | chr5_3:16668319-16668338 | Msa0802370:intron | 30.0% | |
| TAGGATCATATACTGCATTT+CGG | - | chr5_3:16668685-16668704 | Msa0802370:intron | 30.0% | |
| GTAAGACAAATTAGGAATGA+GGG | + | chr5_3:16668829-16668848 | None:intergenic | 30.0% | |
| AGTAAGACAAATTAGGAATG+AGG | + | chr5_3:16668830-16668849 | None:intergenic | 30.0% | |
| GGTTAAGAGTAAGACAAATT+AGG | + | chr5_3:16668837-16668856 | None:intergenic | 30.0% | |
| !!! | TGATCCATGTTGTTTTGAAT+GGG | + | chr5_3:16668859-16668878 | None:intergenic | 30.0% |
| !!! | ATGATCCATGTTGTTTTGAA+TGG | + | chr5_3:16668860-16668879 | None:intergenic | 30.0% |
| TCGGGAAAATAATGAAAAGA+AGG | - | chr5_3:16669001-16669020 | Msa0802370:five_prime_UTR | 30.0% | |
| !! | GTTAATGTGTTTGTTGTTCG+CGG | + | chr5_3:16662912-16662931 | None:intergenic | 35.0% |
| AGATTGAATTGATGAGAAGG+GGG | + | chr5_3:16662974-16662993 | None:intergenic | 35.0% | |
| GAAAAATGGAAATTGAGCGT+AGG | + | chr5_3:16663060-16663079 | None:intergenic | 35.0% | |
| AGTAGCAGTGAATATACAGT+AGG | + | chr5_3:16663101-16663120 | None:intergenic | 35.0% | |
| TACCACTCAAAGAGAAATTG+GGG | + | chr5_3:16663147-16663166 | None:intergenic | 35.0% | |
| !! | TGAATTTGCTATGTTGGGTT+TGG | - | chr5_3:16663323-16663342 | Msa0802370:intron | 35.0% |
| ! | GATTTTGCAATGATTAGGAG+GGG | - | chr5_3:16663385-16663404 | Msa0802370:intron | 35.0% |
| GTTAATGGAATGGTTCATTG+CGG | - | chr5_3:16663425-16663444 | Msa0802370:intron | 35.0% | |
| AAGTATGGGCAATAATGAGA+TGG | - | chr5_3:16663699-16663718 | Msa0802370:intron | 35.0% | |
| GGATAAAACAGCAAAAGAGA+AGG | - | chr5_3:16663720-16663739 | Msa0802370:intron | 35.0% | |
| TCTAGTTAAAACCTGAAAGC+TGG | + | chr5_3:16663910-16663929 | None:intergenic | 35.0% | |
| ! | GACTTATAATTTGGGACTGA+TGG | - | chr5_3:16664309-16664328 | Msa0802370:intron | 35.0% |
| CTTTGCAATATTTAGCGCAA+AGG | + | chr5_3:16664393-16664412 | None:intergenic | 35.0% | |
| AAATTCTCTACATCCTTGGT+TGG | + | chr5_3:16664581-16664600 | None:intergenic | 35.0% | |
| ! | TGCATGGAAATTTTTGCTCA+TGG | + | chr5_3:16664614-16664633 | None:intergenic | 35.0% |
| ATAAAGTCCTCTTCATACAC+CGG | + | chr5_3:16664665-16664684 | None:intergenic | 35.0% | |
| !! | CCTTAAGCTCTAAGGAATTA+GGG | + | chr5_3:16664744-16664763 | None:intergenic | 35.0% |
| !! | TCCTTAAGCTCTAAGGAATT+AGG | + | chr5_3:16664745-16664764 | None:intergenic | 35.0% |
| AAACGTGTATGTCTTAACGA+AGG | - | chr5_3:16664798-16664817 | Msa0802370:intron | 35.0% | |
| AACGTGTATGTCTTAACGAA+GGG | - | chr5_3:16664799-16664818 | Msa0802370:intron | 35.0% | |
| TAATTGACAATGATTACCGG+AGG | + | chr5_3:16665144-16665163 | None:intergenic | 35.0% | |
| !!! | CAACCACTTTTTGCTAATTG+CGG | - | chr5_3:16665208-16665227 | Msa0802370:CDS | 35.0% |
| TTTCCGCAATTAGCAAAAAG+TGG | + | chr5_3:16665214-16665233 | None:intergenic | 35.0% | |
| AACACAAAAAATGCAGAAGG+GGG | + | chr5_3:16665314-16665333 | None:intergenic | 35.0% | |
| GAACACAAAAAATGCAGAAG+GGG | + | chr5_3:16665315-16665334 | None:intergenic | 35.0% | |
| GGAACACAAAAAATGCAGAA+GGG | + | chr5_3:16665316-16665335 | None:intergenic | 35.0% | |
| AGGAACACAAAAAATGCAGA+AGG | + | chr5_3:16665317-16665336 | None:intergenic | 35.0% | |
| AATAGGAAAAGGACAGACAA+AGG | + | chr5_3:16665347-16665366 | None:intergenic | 35.0% | |
| ! | TCCTTTTCCTATTCTGTGAA+GGG | - | chr5_3:16665354-16665373 | Msa0802370:CDS | 35.0% |
| GGCTTGTCCTTATATAAGTA+GGG | - | chr5_3:16665375-16665394 | Msa0802370:CDS | 35.0% | |
| ! | AATTTTTCCTTCACTTCAGG+AGG | + | chr5_3:16665463-16665482 | None:intergenic | 35.0% |
| ! | GGTAATTTTTCCTTCACTTC+AGG | + | chr5_3:16665466-16665485 | None:intergenic | 35.0% |
| ! | CTTCCTTTTGACCTTTTGAT+TGG | + | chr5_3:16665487-16665506 | None:intergenic | 35.0% |
| GGTAGTTTGAACATGATTAC+AGG | - | chr5_3:16665511-16665530 | Msa0802370:intron | 35.0% | |
| AATGAACATGGTAAAACAGC+GGG | - | chr5_3:16665541-16665560 | Msa0802370:CDS | 35.0% | |
| CTAATGGAATTCACTCAAAG+AGG | - | chr5_3:16665572-16665591 | Msa0802370:intron | 35.0% | |
| TCTTGCTCAGACTTATTTGA+AGG | - | chr5_3:16665670-16665689 | Msa0802370:intron | 35.0% | |
| CATGTCCAAGAGAAAATTCT+TGG | - | chr5_3:16665731-16665750 | Msa0802370:CDS | 35.0% | |
| ! | AAGCACCAAGAATTTTCTCT+TGG | + | chr5_3:16665739-16665758 | None:intergenic | 35.0% |
| !! | AGAGAAAATTCTTGGTGCTT+TGG | - | chr5_3:16665739-16665758 | Msa0802370:CDS | 35.0% |
| GTTATCATTCTGTAGGGATA+TGG | + | chr5_3:16665824-16665843 | None:intergenic | 35.0% | |
| ATGATAGGAAACATCAACTG+CGG | + | chr5_3:16665850-16665869 | None:intergenic | 35.0% | |
| CAAATCAAGTAACTGTGTAG+GGG | + | chr5_3:16666004-16666023 | None:intergenic | 35.0% | |
| GCAAATCAAGTAACTGTGTA+GGG | + | chr5_3:16666005-16666024 | None:intergenic | 35.0% | |
| AGCAAATCAAGTAACTGTGT+AGG | + | chr5_3:16666006-16666025 | None:intergenic | 35.0% | |
| TTCTGGCAATTTATGCTGAT+TGG | - | chr5_3:16666079-16666098 | Msa0802370:intron | 35.0% | |
| !! | AGTTATGAAGGTACTAGTGA+AGG | - | chr5_3:16666132-16666151 | Msa0802370:intron | 35.0% |
| AACTAGTGCAAAAATGTGTG+TGG | + | chr5_3:16666227-16666246 | None:intergenic | 35.0% | |
| ATAGGGCTCTCAATTGAAAT+CGG | - | chr5_3:16666321-16666340 | Msa0802370:CDS | 35.0% | |
| CTTCTAACACACATACATCA+TGG | + | chr5_3:16666439-16666458 | None:intergenic | 35.0% | |
| TCAGTGCATACTTCACAAAA+CGG | - | chr5_3:16666512-16666531 | Msa0802370:intron | 35.0% | |
| GTTTGATTAACCACTGTATG+AGG | + | chr5_3:16666551-16666570 | None:intergenic | 35.0% | |
| TATGTCTGTCATTCCTATCT+CGG | - | chr5_3:16666571-16666590 | Msa0802370:intron | 35.0% | |
| CCCGCAACAAACTTAAATAT+AGG | - | chr5_3:16666623-16666642 | Msa0802370:CDS | 35.0% | |
| ATAGTGTTCAGTCACAACTT+TGG | - | chr5_3:16666750-16666769 | Msa0802370:intron | 35.0% | |
| ATGTTGAATGTAAGCAAGAG+GGG | + | chr5_3:16666882-16666901 | None:intergenic | 35.0% | |
| GTATGTTGAATGTAAGCAAG+AGG | + | chr5_3:16666884-16666903 | None:intergenic | 35.0% | |
| TCTTAGTGACAAATACTGAG+AGG | + | chr5_3:16666977-16666996 | None:intergenic | 35.0% | |
| !!! | GTGTTTATATGGTGGGTTTT+AGG | + | chr5_3:16667072-16667091 | None:intergenic | 35.0% |
| !! | AACAGCACTGATTATCATTG+AGG | - | chr5_3:16667193-16667212 | Msa0802370:intron | 35.0% |
| TCGATAAACACCTATTCCAA+GGG | + | chr5_3:16667421-16667440 | None:intergenic | 35.0% | |
| TTCGATAAACACCTATTCCA+AGG | + | chr5_3:16667422-16667441 | None:intergenic | 35.0% | |
| CTCGGAAAAAGAAAAACATG+AGG | + | chr5_3:16667455-16667474 | None:intergenic | 35.0% | |
| ! | CTCATGTTTTTCTTTTTCCG+AGG | - | chr5_3:16667453-16667472 | Msa0802370:intron | 35.0% |
| AATAAACAATGAGACAGCCT+CGG | + | chr5_3:16667473-16667492 | None:intergenic | 35.0% | |
| AAAGACGAAAGCAGTCTAAT+AGG | - | chr5_3:16667819-16667838 | Msa0802370:intron | 35.0% | |
| AAGACGAAAGCAGTCTAATA+GGG | - | chr5_3:16667820-16667839 | Msa0802370:intron | 35.0% | |
| GCAAACACTGAAGGAAATAT+AGG | + | chr5_3:16667899-16667918 | None:intergenic | 35.0% | |
| TATGATCAAGCAAACACTGA+AGG | + | chr5_3:16667908-16667927 | None:intergenic | 35.0% | |
| AATTGTCACGTTTCTGATTC+CGG | - | chr5_3:16667927-16667946 | Msa0802370:intron | 35.0% | |
| TGAAAACAGCACATACAAAC+CGG | + | chr5_3:16667949-16667968 | None:intergenic | 35.0% | |
| CAAGTACTTGTGAGAATGTA+AGG | - | chr5_3:16668318-16668337 | Msa0802370:intron | 35.0% | |
| TCAAACAGAGCATAAATCGA+TGG | - | chr5_3:16668469-16668488 | Msa0802370:intron | 35.0% | |
| CAAACAGAGCATAAATCGAT+GGG | - | chr5_3:16668470-16668489 | Msa0802370:intron | 35.0% | |
| TGGTAAGCCTTCACATATTA+AGG | + | chr5_3:16668545-16668564 | None:intergenic | 35.0% | |
| TTTAATCTACAGGAGAGACT+TGG | - | chr5_3:16668589-16668608 | Msa0802370:intron | 35.0% | |
| TTAATCTACAGGAGAGACTT+GGG | - | chr5_3:16668590-16668609 | Msa0802370:intron | 35.0% | |
| AGGATCATATACTGCATTTC+GGG | - | chr5_3:16668686-16668705 | Msa0802370:intron | 35.0% | |
| TAACCCCATTCAAAACAACA+TGG | - | chr5_3:16668852-16668871 | Msa0802370:five_prime_UTR | 35.0% | |
| !!! | GATCCATGTTGTTTTGAATG+GGG | + | chr5_3:16668858-16668877 | None:intergenic | 35.0% |
| CGTAGGAAGAAGGTGAATTT+GGG | + | chr5_3:16663043-16663062 | None:intergenic | 40.0% | |
| CAGTGAATATACAGTAGGAG+GGG | + | chr5_3:16663096-16663115 | None:intergenic | 40.0% | |
| GCAGTGAATATACAGTAGGA+GGG | + | chr5_3:16663097-16663116 | None:intergenic | 40.0% | |
| AGCAGTGAATATACAGTAGG+AGG | + | chr5_3:16663098-16663117 | None:intergenic | 40.0% | |
| ATCCCCAATTTCTCTTTGAG+TGG | - | chr5_3:16663142-16663161 | Msa0802370:three_prime_UTR | 40.0% | |
| CAATGATTAGGAGGGGAATT+AGG | - | chr5_3:16663392-16663411 | Msa0802370:intron | 40.0% | |
| !! | TTAGGATGGTGGGTTGTTAA+TGG | - | chr5_3:16663410-16663429 | Msa0802370:intron | 40.0% |
| !! | ATGGTGGGTTGTTAATGGAA+TGG | - | chr5_3:16663415-16663434 | Msa0802370:intron | 40.0% |
| AATTAGACCTGTGATGTTGG+TGG | + | chr5_3:16663760-16663779 | None:intergenic | 40.0% | |
| CTCAATTAGACCTGTGATGT+TGG | + | chr5_3:16663763-16663782 | None:intergenic | 40.0% | |
| ! | TGGTACATTTTGTGTGACGA+AGG | - | chr5_3:16663814-16663833 | Msa0802370:CDS | 40.0% |
| ATTAACTGTTCCAGTGCTAG+TGG | + | chr5_3:16663877-16663896 | None:intergenic | 40.0% | |
| TGGAACAGTTAATCCTGACT+GGG | - | chr5_3:16663884-16663903 | Msa0802370:CDS | 40.0% | |
| ACCCTGCTCCAAAATTGTAT+AGG | - | chr5_3:16663980-16663999 | Msa0802370:intron | 40.0% | |
| !!! | GCCTATACAATTTTGGAGCA+GGG | + | chr5_3:16663984-16664003 | None:intergenic | 40.0% |
| !!! | TGCCTATACAATTTTGGAGC+AGG | + | chr5_3:16663985-16664004 | None:intergenic | 40.0% |
| GTAGTATATGCGTCATTACC+TGG | + | chr5_3:16664076-16664095 | None:intergenic | 40.0% | |
| CTTTCCCACGTAGTTAATGA+AGG | + | chr5_3:16664203-16664222 | None:intergenic | 40.0% | |
| ! | GCGGACTACATAAAACATAG+TGG | - | chr5_3:16664468-16664487 | Msa0802370:intron | 40.0% |
| ATCTCTGTGATGGTTCTTTC+TGG | + | chr5_3:16664512-16664531 | None:intergenic | 40.0% | |
| AAGAATGCTCATCTCTGTGA+TGG | + | chr5_3:16664522-16664541 | None:intergenic | 40.0% | |
| TCACAGAGATGAGCATTCTT+AGG | - | chr5_3:16664522-16664541 | Msa0802370:intron | 40.0% | |
| GCATTCTTAGGTTTAAGAGC+TGG | - | chr5_3:16664534-16664553 | Msa0802370:intron | 40.0% | |
| GAGCTGGATAGAAATGTTGT+CGG | - | chr5_3:16664550-16664569 | Msa0802370:intron | 40.0% | |
| CAGCAAATTCTCTACATCCT+TGG | + | chr5_3:16664585-16664604 | None:intergenic | 40.0% | |
| CAAGGATGTAGAGAATTTGC+TGG | - | chr5_3:16664583-16664602 | Msa0802370:intron | 40.0% | |
| AAATTTCCCGGTGTATGAAG+AGG | - | chr5_3:16664655-16664674 | Msa0802370:intron | 40.0% | |
| TAAAGTCCTCTTCATACACC+GGG | + | chr5_3:16664664-16664683 | None:intergenic | 40.0% | |
| TTTATGCTCTCTCATGTGCT+AGG | - | chr5_3:16664680-16664699 | Msa0802370:intron | 40.0% | |
| CCCTAATTCCTTAGAGCTTA+AGG | - | chr5_3:16664741-16664760 | Msa0802370:intron | 40.0% | |
| !! | ACACTTGCCCGTGTTTTATT+TGG | - | chr5_3:16665008-16665027 | Msa0802370:intron | 40.0% |
| TACATTGCAACATAGGGATG+TGG | + | chr5_3:16665087-16665106 | None:intergenic | 40.0% | |
| TGGGGATACATTGCAACATA+GGG | + | chr5_3:16665093-16665112 | None:intergenic | 40.0% | |
| ATGGGGATACATTGCAACAT+AGG | + | chr5_3:16665094-16665113 | None:intergenic | 40.0% | |
| TATGTTGCAATGTATCCCCA+TGG | - | chr5_3:16665093-16665112 | Msa0802370:intron | 40.0% | |
| ATGAGCATATATGCCACCAT+GGG | + | chr5_3:16665112-16665131 | None:intergenic | 40.0% | |
| !! | GCAAAAAGTGGTTGGTGAAT+TGG | + | chr5_3:16665202-16665221 | None:intergenic | 40.0% |
| CGCAATTAGCAAAAAGTGGT+TGG | + | chr5_3:16665210-16665229 | None:intergenic | 40.0% | |
| ! | GTCCTTTTCCTATTCTGTGA+AGG | - | chr5_3:16665353-16665372 | Msa0802370:CDS | 40.0% |
| GGGCTTGTCCTTATATAAGT+AGG | - | chr5_3:16665374-16665393 | Msa0802370:CDS | 40.0% | |
| AGTAACACGAGTTTACATGC+AGG | - | chr5_3:16665402-16665421 | Msa0802370:intron | 40.0% | |
| GTAACACGAGTTTACATGCA+GGG | - | chr5_3:16665403-16665422 | Msa0802370:intron | 40.0% | |
| TTTACCATCAGTTTCCATGC+TGG | + | chr5_3:16665440-16665459 | None:intergenic | 40.0% | |
| ATGAACATGGTAAAACAGCG+GGG | - | chr5_3:16665542-16665561 | Msa0802370:CDS | 40.0% | |
| !! | GAAAATTCTTGGTGCTTTGG+AGG | - | chr5_3:16665742-16665761 | Msa0802370:CDS | 40.0% |
| CGGGAAGTTATCATTCTGTA+GGG | + | chr5_3:16665830-16665849 | None:intergenic | 40.0% | |
| TGATAGGAAACATCAACTGC+GGG | + | chr5_3:16665849-16665868 | None:intergenic | 40.0% | |
| TGGTATTCTTGGATTTGCAG+TGG | - | chr5_3:16666099-16666118 | Msa0802370:intron | 40.0% | |
| GGTGAAAGTGGAAGTTATGA+AGG | - | chr5_3:16666120-16666139 | Msa0802370:intron | 40.0% | |
| GTAAGTTCTGTGACGTTCAT+CGG | - | chr5_3:16666177-16666196 | Msa0802370:intron | 40.0% | |
| TAGGGCTCTCAATTGAAATC+GGG | - | chr5_3:16666322-16666341 | Msa0802370:CDS | 40.0% | |
| !! | GCTGGATTCTTTTGAAGGTT+TGG | - | chr5_3:16666351-16666370 | Msa0802370:CDS | 40.0% |
| ACAGGTGAACCATCTCAAAA+TGG | - | chr5_3:16666485-16666504 | Msa0802370:intron | 40.0% | |
| !!! | ACTGAACTGCCATTTTGAGA+TGG | + | chr5_3:16666497-16666516 | None:intergenic | 40.0% |
| CAGTGCATACTTCACAAAAC+GGG | - | chr5_3:16666513-16666532 | Msa0802370:intron | 40.0% | |
| AGTGCATACTTCACAAAACG+GGG | - | chr5_3:16666514-16666533 | Msa0802370:intron | 40.0% | |
| ACTTAATGCACCTCATACAG+TGG | - | chr5_3:16666538-16666557 | Msa0802370:intron | 40.0% | |
| ! | ATTTTCATCGAGGTAGTCGA+AGG | - | chr5_3:16667039-16667058 | Msa0802370:intron | 40.0% |
| ! | CAATTTTTGATGAGCTGCCA+TGG | + | chr5_3:16667116-16667135 | None:intergenic | 40.0% |
| !! | GACGAAGACTATTTCGAGTT+AGG | - | chr5_3:16667224-16667243 | Msa0802370:intron | 40.0% |
| !!! | TGTAGGAGTAGCTTTTTTCC+TGG | - | chr5_3:16667616-16667635 | Msa0802370:intron | 40.0% |
| !!! | GTAGGAGTAGCTTTTTTCCT+GGG | - | chr5_3:16667617-16667636 | Msa0802370:intron | 40.0% |
| !!! | TAGGAGTAGCTTTTTTCCTG+GGG | - | chr5_3:16667618-16667637 | Msa0802370:intron | 40.0% |
| AAACATGAGTTACATTCCCC+AGG | + | chr5_3:16667637-16667656 | None:intergenic | 40.0% | |
| AGTCTAATAGGGAATCTGCT+CGG | - | chr5_3:16667831-16667850 | Msa0802370:intron | 40.0% | |
| !!! | GGTTTGTATGTGCTGTTTTC+AGG | - | chr5_3:16667948-16667967 | Msa0802370:intron | 40.0% |
| GCGATTTACTTCTAATCGGA+GGG | + | chr5_3:16668028-16668047 | None:intergenic | 40.0% | |
| TGCGATTTACTTCTAATCGG+AGG | + | chr5_3:16668029-16668048 | None:intergenic | 40.0% | |
| TAAAGAAGGGAACCCATGAA+AGG | - | chr5_3:16668145-16668164 | Msa0802370:CDS | 40.0% | |
| AAAGAAGGGAACCCATGAAA+GGG | - | chr5_3:16668146-16668165 | Msa0802370:CDS | 40.0% | |
| ! | CATAAATCGATGGGCTTAGA+TGG | - | chr5_3:16668479-16668498 | Msa0802370:intron | 40.0% |
| !! | CGAATGGTGTAGGTTTTAGT+TGG | + | chr5_3:16668515-16668534 | None:intergenic | 40.0% |
| AGGAAATCTACGAATGGTGT+AGG | + | chr5_3:16668525-16668544 | None:intergenic | 40.0% | |
| TAATCTACAGGAGAGACTTG+GGG | - | chr5_3:16668591-16668610 | Msa0802370:intron | 40.0% | |
| ! | TCGTTACACATGTGTTGATC+TGG | + | chr5_3:16668622-16668641 | None:intergenic | 40.0% |
| TGTAACGACAGTCAACAAAG+TGG | - | chr5_3:16668634-16668653 | Msa0802370:intron | 40.0% | |
| ! | CAAGAGCGTGATCTTTGTTT+CGG | - | chr5_3:16668729-16668748 | Msa0802370:intron | 40.0% |
| TGAGAAGGGGGCAAAGAATT+GGG | + | chr5_3:16662962-16662981 | None:intergenic | 45.0% | |
| ATGAGAAGGGGGCAAAGAAT+TGG | + | chr5_3:16662963-16662982 | None:intergenic | 45.0% | |
| GCGTAGGAAGAAGGTGAATT+TGG | + | chr5_3:16663044-16663063 | None:intergenic | 45.0% | |
| GGAAATTGAGCGTAGGAAGA+AGG | + | chr5_3:16663053-16663072 | None:intergenic | 45.0% | |
| ACAGTAGGAGGGGTCAAAAT+TGG | + | chr5_3:16663086-16663105 | None:intergenic | 45.0% | |
| ! | CTCTCCAAATCAAGCTCTGA+AGG | - | chr5_3:16663119-16663138 | Msa0802370:three_prime_UTR | 45.0% |
| GGATCCTTCAGAGCTTGATT+TGG | + | chr5_3:16663126-16663145 | None:intergenic | 45.0% | |
| GATTAGGAGGGGAATTAGGA+TGG | - | chr5_3:16663396-16663415 | Msa0802370:intron | 45.0% | |
| CTGGAACAGTTAATCCTGAC+TGG | - | chr5_3:16663883-16663902 | Msa0802370:CDS | 45.0% | |
| TATTCTCCTATGCCTCCACA+TGG | - | chr5_3:16664005-16664024 | Msa0802370:intron | 45.0% | |
| ! | ATGAATCCATGTGGAGGCAT+AGG | + | chr5_3:16664014-16664033 | None:intergenic | 45.0% |
| TATGCCTCCACATGGATTCA+TGG | - | chr5_3:16664013-16664032 | Msa0802370:intron | 45.0% | |
| CACATATAAGGGTGAGCTTG+GGG | + | chr5_3:16664047-16664066 | None:intergenic | 45.0% | |
| CCACATATAAGGGTGAGCTT+GGG | + | chr5_3:16664048-16664067 | None:intergenic | 45.0% | |
| CCAAGCTCACCCTTATATGT+GGG | - | chr5_3:16664046-16664065 | Msa0802370:CDS | 45.0% | |
| CAAGCTCACCCTTATATGTG+GGG | - | chr5_3:16664047-16664066 | Msa0802370:CDS | 45.0% | |
| ATTGCAACATAGGGATGTGG+TGG | + | chr5_3:16665084-16665103 | None:intergenic | 45.0% | |
| TGAGCATATATGCCACCATG+GGG | + | chr5_3:16665111-16665130 | None:intergenic | 45.0% | |
| GATGAGCATATATGCCACCA+TGG | + | chr5_3:16665113-16665132 | None:intergenic | 45.0% | |
| GTAGGCATGGCATAAGGATA+TGG | + | chr5_3:16665256-16665275 | None:intergenic | 45.0% | |
| ! | TTTGGAGTAGGCATGGCATA+AGG | + | chr5_3:16665262-16665281 | None:intergenic | 45.0% |
| TATGCCATGCCTACTCCAAA+CGG | - | chr5_3:16665262-16665281 | Msa0802370:CDS | 45.0% | |
| ! | AATACCGTTTGGAGTAGGCA+TGG | + | chr5_3:16665269-16665288 | None:intergenic | 45.0% |
| ! | TCAGCAATACCGTTTGGAGT+AGG | + | chr5_3:16665274-16665293 | None:intergenic | 45.0% |
| TACTCCAAACGGTATTGCTG+AGG | - | chr5_3:16665273-16665292 | Msa0802370:CDS | 45.0% | |
| GGACAGACAAAGGAGAAAGA+AGG | + | chr5_3:16665337-16665356 | None:intergenic | 45.0% | |
| GCCCTTCACAGAATAGGAAA+AGG | + | chr5_3:16665358-16665377 | None:intergenic | 45.0% | |
| TGGTAAACCTCCTGAAGTGA+AGG | - | chr5_3:16665453-16665472 | Msa0802370:intron | 45.0% | |
| ATGGATGCACAAGTCACGTA+AGG | + | chr5_3:16665621-16665640 | None:intergenic | 45.0% | |
| GCGGGAAGTTATCATTCTGT+AGG | + | chr5_3:16665831-16665850 | None:intergenic | 45.0% | |
| TGGATTTGCAGTGGTGAAAG+TGG | - | chr5_3:16666108-16666127 | Msa0802370:intron | 45.0% | |
| AGGGCTCTCAATTGAAATCG+GGG | - | chr5_3:16666323-16666342 | Msa0802370:CDS | 45.0% | |
| ! | GACAGGCTGGATTCTTTTGA+AGG | - | chr5_3:16666346-16666365 | Msa0802370:CDS | 45.0% |
| GTGCATACTTCACAAAACGG+GGG | - | chr5_3:16666515-16666534 | Msa0802370:intron | 45.0% | |
| GCTGGAATGTTGGATGAAGT+TGG | + | chr5_3:16666668-16666687 | None:intergenic | 45.0% | |
| TCAGTCACAACTTTGGCTAC+AGG | - | chr5_3:16666757-16666776 | Msa0802370:CDS | 45.0% | |
| !! | TGTTAAATGGTGTCGCACCA+TGG | + | chr5_3:16667177-16667196 | None:intergenic | 45.0% |
| GATTCATAACTCGATGCCCT+TGG | - | chr5_3:16667402-16667421 | Msa0802370:intron | 45.0% | |
| TAACTCGATGCCCTTGGAAT+AGG | - | chr5_3:16667408-16667427 | Msa0802370:intron | 45.0% | |
| TGAAGGAAATATAGGCCACG+TGG | + | chr5_3:16667891-16667910 | None:intergenic | 45.0% | |
| TACCTTGAGAGCTGCATTCT+CGG | + | chr5_3:16668079-16668098 | None:intergenic | 45.0% | |
| AAGAAGGGAACCCATGAAAG+GGG | - | chr5_3:16668147-16668166 | Msa0802370:CDS | 45.0% | |
| GGAAGTAACTCCCCTTTCAT+GGG | + | chr5_3:16668160-16668179 | None:intergenic | 45.0% | |
| ! | TACTTCCCCTGGTTTGAACT+CGG | - | chr5_3:16668173-16668192 | Msa0802370:CDS | 45.0% |
| !! | TTGTCGATTCGGCAGACTAA+AGG | - | chr5_3:16668257-16668276 | Msa0802370:intron | 45.0% |
| !! | CGGCAGACTAAAGGTATTGT+TGG | - | chr5_3:16668266-16668285 | Msa0802370:intron | 45.0% |
| ! | AGAATGTAAGGGAGAGCGTA+TGG | - | chr5_3:16668330-16668349 | Msa0802370:intron | 45.0% |
| ! | CGATGGGCTTAGATGGAATT+TGG | - | chr5_3:16668486-16668505 | Msa0802370:intron | 45.0% |
| TCAACAAAGTGGACAGACAG+AGG | - | chr5_3:16668645-16668664 | Msa0802370:intron | 45.0% | |
| !! | CACGCTCTTGCTATTGAGTT+AGG | + | chr5_3:16668719-16668738 | None:intergenic | 45.0% |
| !!! | TAAATTTTAAGATATATAAA+AGG | - | chr5_3:16666248-16666267 | Msa0802370:intron | 5.0% |
| !! | TGTGTTTGTTGTTCGCGGAG+AGG | + | chr5_3:16662907-16662926 | None:intergenic | 50.0% |
| GAGAAGGGGGCAAAGAATTG+GGG | + | chr5_3:16662961-16662980 | None:intergenic | 50.0% | |
| TAGGAGGGGAATTAGGATGG+TGG | - | chr5_3:16663399-16663418 | Msa0802370:intron | 50.0% | |
| AGGAGGGGAATTAGGATGGT+GGG | - | chr5_3:16663400-16663419 | Msa0802370:intron | 50.0% | |
| ! | TAGACCTGTGATGTTGGTGG+TGG | + | chr5_3:16663757-16663776 | None:intergenic | 50.0% |
| AACTGTTCCAGTGCTAGTGG+CGG | + | chr5_3:16663874-16663893 | None:intergenic | 50.0% | |
| CTTGACGCCATGAATCCATG+TGG | + | chr5_3:16664023-16664042 | None:intergenic | 50.0% | |
| CCCAAGCTCACCCTTATATG+TGG | - | chr5_3:16664045-16664064 | Msa0802370:CDS | 50.0% | |
| CCCACATATAAGGGTGAGCT+TGG | + | chr5_3:16664049-16664068 | None:intergenic | 50.0% | |
| CCTGGACACCCCACATATAA+GGG | + | chr5_3:16664058-16664077 | None:intergenic | 50.0% | |
| ACCTGGACACCCCACATATA+AGG | + | chr5_3:16664059-16664078 | None:intergenic | 50.0% | |
| CAGCACATGATGCCTCCTTA+TGG | - | chr5_3:16665054-16665073 | Msa0802370:intron | 50.0% | |
| ! | TGTGGTGGAGTACCATAAGG+AGG | + | chr5_3:16665069-16665088 | None:intergenic | 50.0% |
| ! | GGATGTGGTGGAGTACCATA+AGG | + | chr5_3:16665072-16665091 | None:intergenic | 50.0% |
| GTTGCAATGTATCCCCATGG+TGG | - | chr5_3:16665096-16665115 | Msa0802370:intron | 50.0% | |
| ! | ATGATTACCGGAGGCATGGA+TGG | + | chr5_3:16665135-16665154 | None:intergenic | 50.0% |
| GACAATGATTACCGGAGGCA+TGG | + | chr5_3:16665139-16665158 | None:intergenic | 50.0% | |
| GCAGAAGGGGGAAAAACTCA+CGG | + | chr5_3:16665302-16665321 | None:intergenic | 50.0% | |
| GGACAAGCCCTTCACAGAAT+AGG | + | chr5_3:16665364-16665383 | None:intergenic | 50.0% | |
| TGTAGGGGTCCTCATGCATT+AGG | + | chr5_3:16665989-16666008 | None:intergenic | 50.0% | |
| GGGCTCTCAATTGAAATCGG+GGG | - | chr5_3:16666324-16666343 | Msa0802370:CDS | 50.0% | |
| CTCAATTGAAATCGGGGGAC+AGG | - | chr5_3:16666329-16666348 | Msa0802370:CDS | 50.0% | |
| GTCATTCCTATCTCGGCAAG+TGG | - | chr5_3:16666578-16666597 | Msa0802370:intron | 50.0% | |
| TTCATCGAGGTAGTCGAAGG+CGG | - | chr5_3:16667042-16667061 | Msa0802370:intron | 50.0% | |
| ! | TTTTGTCTATGGCGCTGCCA+TGG | - | chr5_3:16667096-16667115 | Msa0802370:intron | 50.0% |
| !! | TAAATGGTGTCGCACCATGG+CGG | + | chr5_3:16667174-16667193 | None:intergenic | 50.0% |
| TTCCGAGAATGCAGCTCTCA+AGG | - | chr5_3:16668074-16668093 | Msa0802370:intron | 50.0% | |
| GGGAAGTAACTCCCCTTTCA+TGG | + | chr5_3:16668161-16668180 | None:intergenic | 50.0% | |
| ! | ACTTCCCCTGGTTTGAACTC+GGG | - | chr5_3:16668174-16668193 | Msa0802370:CDS | 50.0% |
| AAGTCCCGAGTTCAAACCAG+GGG | + | chr5_3:16668181-16668200 | None:intergenic | 50.0% | |
| CAAGTCCCGAGTTCAAACCA+GGG | + | chr5_3:16668182-16668201 | None:intergenic | 50.0% | |
| ACAAGTCCCGAGTTCAAACC+AGG | + | chr5_3:16668183-16668202 | None:intergenic | 50.0% | |
| CTGGAGAGCTCGTGGAAATA+TGG | + | chr5_3:16668390-16668409 | None:intergenic | 50.0% | |
| CATATTTCCACGAGCTCTCC+AGG | - | chr5_3:16668388-16668407 | Msa0802370:intron | 50.0% | |
| GATAAATCCTGGAGAGCTCG+TGG | + | chr5_3:16668398-16668417 | None:intergenic | 50.0% | |
| TGGACAGACAGAGGTTGTGT+AGG | - | chr5_3:16668654-16668673 | Msa0802370:intron | 50.0% | |
| GGACAGACAGAGGTTGTGTA+GGG | - | chr5_3:16668655-16668674 | Msa0802370:intron | 50.0% | |
| GGTTGTGTAGGGTGGTCATT+AGG | - | chr5_3:16668666-16668685 | Msa0802370:intron | 50.0% | |
| GACACCACCACCAACATCAC+AGG | - | chr5_3:16663750-16663769 | Msa0802370:intron | 55.0% | |
| GACGCCATGAATCCATGTGG+AGG | + | chr5_3:16664020-16664039 | None:intergenic | 55.0% | |
| ! | CCCTTATATGTGGGGTGTCC+AGG | - | chr5_3:16664055-16664074 | Msa0802370:CDS | 55.0% |
| GTTGTCGGACTCTCCAACCA+AGG | - | chr5_3:16664565-16664584 | Msa0802370:intron | 55.0% | |
| TGCTCATCCATCCATGCCTC+CGG | - | chr5_3:16665125-16665144 | Msa0802370:CDS | 55.0% | |
| GAGGCCTCAGCAATACCGTT+TGG | + | chr5_3:16665280-16665299 | None:intergenic | 55.0% | |
| GAAGGGGGAAAAACTCACGG+AGG | + | chr5_3:16665299-16665318 | None:intergenic | 55.0% | |
| CCATCAGTTTCCATGCTGGC+AGG | + | chr5_3:16665436-16665455 | None:intergenic | 55.0% | |
| CCTGCCAGCATGGAAACTGA+TGG | - | chr5_3:16665433-16665452 | Msa0802370:intron | 55.0% | |
| ACAGCGGGGACATCTGCTAA+TGG | - | chr5_3:16665556-16665575 | Msa0802370:CDS | 55.0% | |
| ATTGAAATCGGGGGACAGGC+TGG | - | chr5_3:16666333-16666352 | Msa0802370:CDS | 55.0% | |
| TCCAACATTCCAGCTCTCCG+CGG | - | chr5_3:16666674-16666693 | Msa0802370:intron | 55.0% | |
| ! | GGGTGGTTACTGGTGGATCA+CGG | - | chr5_3:16666726-16666745 | Msa0802370:intron | 55.0% |
| ! | GGTGGTTACTGGTGGATCAC+GGG | - | chr5_3:16666727-16666746 | Msa0802370:intron | 55.0% |
| GAAAGGGGAGTTACTTCCCC+TGG | - | chr5_3:16668162-16668181 | Msa0802370:CDS | 55.0% | |
| CAGACAGAGGTTGTGTAGGG+TGG | - | chr5_3:16668658-16668677 | Msa0802370:intron | 55.0% | |
| GGAACTCGTGGGTCGTCGTA+CGG | + | chr5_3:16662886-16662905 | None:intergenic | 60.0% | |
| GTTCGCGGAGAGGAACTCGT+GGG | + | chr5_3:16662897-16662916 | None:intergenic | 60.0% | |
| TGTTCGCGGAGAGGAACTCG+TGG | + | chr5_3:16662898-16662917 | None:intergenic | 60.0% | |
| TCCTGACTGGGCCAGCTTTC+AGG | - | chr5_3:16663896-16663915 | Msa0802370:CDS | 60.0% | |
| ACCTGAAAGCTGGCCCAGTC+AGG | + | chr5_3:16663900-16663919 | None:intergenic | 60.0% | |
| GGGAAACACTCCTGCCAGCA+TGG | - | chr5_3:16665423-16665442 | Msa0802370:intron | 60.0% | |
| ! | GGAGCACCACTTGCCGAGAT+AGG | + | chr5_3:16666587-16666606 | None:intergenic | 60.0% |
| ATCTCGGCAAGTGGTGCTCC+TGG | - | chr5_3:16666587-16666606 | Msa0802370:intron | 60.0% | |
| ! | GGTGCTCCTGGAGCTGTTTC+TGG | - | chr5_3:16666599-16666618 | Msa0802370:intron | 60.0% |
| TCCGCGGAGAGCTGGAATGT+TGG | + | chr5_3:16666678-16666697 | None:intergenic | 60.0% | |
| CATTCCAGCTCTCCGCGGAA+AGG | - | chr5_3:16666679-16666698 | Msa0802370:intron | 60.0% | |
| TGGTAGGCGGAACCTTTCCG+CGG | + | chr5_3:16666694-16666713 | None:intergenic | 60.0% | |
| GGTTCCGCCTACCACAGTTG+CGG | - | chr5_3:16666700-16666719 | Msa0802370:intron | 60.0% | |
| GTTCCGCCTACCACAGTTGC+GGG | - | chr5_3:16666701-16666720 | Msa0802370:intron | 60.0% | |
| TCGAGGTAGTCGAAGGCGGA+AGG | - | chr5_3:16667046-16667065 | Msa0802370:intron | 60.0% | |
| GGGAATCTGCTCGGAGATCC+AGG | - | chr5_3:16667840-16667859 | Msa0802370:intron | 60.0% | |
| GAGATCCAGGTTGCGCAAGC+AGG | - | chr5_3:16667853-16667872 | Msa0802370:intron | 60.0% | |
| AGGTGACGTCGAGTTCCACG+TGG | - | chr5_3:16667873-16667892 | Msa0802370:intron | 60.0% | |
| CTCGTGGGTCGTCGTACGGT+GGG | + | chr5_3:16662882-16662901 | None:intergenic | 65.0% | |
| ACTCGTGGGTCGTCGTACGG+TGG | + | chr5_3:16662883-16662902 | None:intergenic | 65.0% | |
| CCAGTGCTAGTGGCGGTCGA+AGG | + | chr5_3:16663867-16663886 | None:intergenic | 65.0% | |
| CCTTCGACCGCCACTAGCAC+TGG | - | chr5_3:16663864-16663883 | Msa0802370:CDS | 65.0% | |
| GGAACCTTTCCGCGGAGAGC+TGG | + | chr5_3:16666686-16666705 | None:intergenic | 65.0% | |
| CCTCCCGCAACTGTGGTAGG+CGG | + | chr5_3:16666707-16666726 | None:intergenic | 65.0% | |
| CGCCTACCACAGTTGCGGGA+GGG | - | chr5_3:16666705-16666724 | Msa0802370:intron | 65.0% | |
| GCCTACCACAGTTGCGGGAG+GGG | - | chr5_3:16666706-16666725 | Msa0802370:intron | 65.0% | |
| ACCCCTCCCGCAACTGTGGT+AGG | + | chr5_3:16666710-16666729 | None:intergenic | 65.0% | |
| TACCACAGTTGCGGGAGGGG+TGG | - | chr5_3:16666709-16666728 | Msa0802370:intron | 65.0% | |
| AACCACCCCTCCCGCAACTG+TGG | + | chr5_3:16666714-16666733 | None:intergenic | 65.0% | |
| GTTGCGGGAGGGGTGGTTAC+TGG | - | chr5_3:16666716-16666735 | Msa0802370:intron | 65.0% | |
| TCCACCATGCCACTCCGCCA+TGG | - | chr5_3:16667157-16667176 | Msa0802370:intron | 65.0% | |
| ! | ACCATGGCGGAGTGGCATGG+TGG | + | chr5_3:16667161-16667180 | None:intergenic | 65.0% |
| CGTCACCTGCTTGCGCAACC+TGG | + | chr5_3:16667861-16667880 | None:intergenic | 65.0% | |
| TGGCGGTCGAAGGCTGCTCC+TGG | + | chr5_3:16663857-16663876 | None:intergenic | 70.0% | |
| GCGGGGCCAGAAACAGCTCC+AGG | + | chr5_3:16666608-16666627 | None:intergenic | 70.0% | |
| CCGCCTACCACAGTTGCGGG+AGG | - | chr5_3:16666704-16666723 | Msa0802370:intron | 70.0% | |
| GCGGGAGGGGTGGTTACTGG+TGG | - | chr5_3:16666719-16666738 | Msa0802370:intron | 70.0% | |
| ! | CGCACCATGGCGGAGTGGCA+TGG | + | chr5_3:16667164-16667183 | None:intergenic | 70.0% |
| ! | GGTGTCGCACCATGGCGGAG+TGG | + | chr5_3:16667169-16667188 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 16662850 | 16669050 | 16662850 | ID=Msa0802370;Name=Msa0802370 |
| chr5_3 | mRNA | 16662850 | 16669050 | 16662850 | ID=Msa0802370-mRNA-1;Parent=Msa0802370;Name=Msa0802370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=358|0.81|0.91|1|0.81|0.75|12|335|386 |
| chr5_3 | exon | 16662850 | 16663299 | 16662850 | ID=Msa0802370-mRNA-1:exon:6971;Parent=Msa0802370-mRNA-1 |
| chr5_3 | exon | 16663800 | 16663930 | 16663800 | ID=Msa0802370-mRNA-1:exon:6970;Parent=Msa0802370-mRNA-1 |
| chr5_3 | exon | 16664026 | 16664103 | 16664026 | ID=Msa0802370-mRNA-1:exon:6969;Parent=Msa0802370-mRNA-1 |
| chr5_3 | exon | 16665122 | 16665411 | 16665122 | ID=Msa0802370-mRNA-1:exon:6968;Parent=Msa0802370-mRNA-1 |
| chr5_3 | exon | 16665533 | 16665575 | 16665533 | ID=Msa0802370-mRNA-1:exon:6967;Parent=Msa0802370-mRNA-1 |
| chr5_3 | exon | 16665724 | 16665781 | 16665724 | ID=Msa0802370-mRNA-1:exon:6966;Parent=Msa0802370-mRNA-1 |
| chr5_3 | exon | 16666307 | 16666476 | 16666307 | ID=Msa0802370-mRNA-1:exon:6965;Parent=Msa0802370-mRNA-1 |
| chr5_3 | exon | 16666600 | 16666656 | 16666600 | ID=Msa0802370-mRNA-1:exon:6964;Parent=Msa0802370-mRNA-1 |
| chr5_3 | exon | 16666754 | 16666843 | 16666754 | ID=Msa0802370-mRNA-1:exon:6963;Parent=Msa0802370-mRNA-1 |
| chr5_3 | exon | 16667983 | 16668042 | 16667983 | ID=Msa0802370-mRNA-1:exon:6962;Parent=Msa0802370-mRNA-1 |
| chr5_3 | exon | 16668129 | 16668241 | 16668129 | ID=Msa0802370-mRNA-1:exon:6961;Parent=Msa0802370-mRNA-1 |
| chr5_3 | exon | 16668737 | 16669050 | 16668737 | ID=Msa0802370-mRNA-1:exon:6960;Parent=Msa0802370-mRNA-1 |
| chr5_3 | five_prime_UTR | 16668737 | 16669050 | 16668737 | ID=Msa0802370-mRNA-1:five_prime_utr;Parent=Msa0802370-mRNA-1 |
| chr5_3 | five_prime_UTR | 16668198 | 16668241 | 16668198 | ID=Msa0802370-mRNA-1:five_prime_utr;Parent=Msa0802370-mRNA-1 |
| chr5_3 | CDS | 16668129 | 16668197 | 16668129 | ID=Msa0802370-mRNA-1:cds;Parent=Msa0802370-mRNA-1 |
| chr5_3 | CDS | 16667983 | 16668042 | 16667983 | ID=Msa0802370-mRNA-1:cds;Parent=Msa0802370-mRNA-1 |
| chr5_3 | CDS | 16666754 | 16666843 | 16666754 | ID=Msa0802370-mRNA-1:cds;Parent=Msa0802370-mRNA-1 |
| chr5_3 | CDS | 16666600 | 16666656 | 16666600 | ID=Msa0802370-mRNA-1:cds;Parent=Msa0802370-mRNA-1 |
| chr5_3 | CDS | 16666307 | 16666476 | 16666307 | ID=Msa0802370-mRNA-1:cds;Parent=Msa0802370-mRNA-1 |
| chr5_3 | CDS | 16665724 | 16665781 | 16665724 | ID=Msa0802370-mRNA-1:cds;Parent=Msa0802370-mRNA-1 |
| chr5_3 | CDS | 16665533 | 16665575 | 16665533 | ID=Msa0802370-mRNA-1:cds;Parent=Msa0802370-mRNA-1 |
| chr5_3 | CDS | 16665122 | 16665411 | 16665122 | ID=Msa0802370-mRNA-1:cds;Parent=Msa0802370-mRNA-1 |
| chr5_3 | CDS | 16664026 | 16664103 | 16664026 | ID=Msa0802370-mRNA-1:cds;Parent=Msa0802370-mRNA-1 |
| chr5_3 | CDS | 16663800 | 16663930 | 16663800 | ID=Msa0802370-mRNA-1:cds;Parent=Msa0802370-mRNA-1 |
| chr5_3 | CDS | 16663185 | 16663299 | 16663185 | ID=Msa0802370-mRNA-1:cds;Parent=Msa0802370-mRNA-1 |
| chr5_3 | three_prime_UTR | 16662850 | 16663184 | 16662850 | ID=Msa0802370-mRNA-1:three_prime_utr;Parent=Msa0802370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
