Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802650 | XP_003612774.2 | 88.172 | 372 | 19 | 1 | 1 | 347 | 1 | 372 | 0.0 | 662 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802650 | sp|Q501B2|BZP16_ARATH | 59.221 | 385 | 113 | 8 | 1 | 352 | 1 | 374 | 1.54e-139 | 406 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802650 | G7KB04 | 88.172 | 372 | 19 | 1 | 1 | 347 | 1 | 372 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0802650 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0802370 | Msa0802650 | 0.851399 | 9.101980e-61 | -8.615850e-47 |
| Msa0802650 | Msa0802680 | 0.802234 | 6.180544e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802650 | MtrunA17_Chr5g0410531 | 88.172 | 372 | 19 | 1 | 1 | 347 | 1 | 372 | 0.0 | 662 |
| Msa0802650 | MtrunA17_Chr8g0369161 | 69.620 | 395 | 83 | 6 | 1 | 361 | 1 | 392 | 0.0 | 519 |
| Msa0802650 | MtrunA17_Chr7g0275321 | 38.585 | 311 | 157 | 11 | 39 | 347 | 67 | 345 | 2.35e-48 | 169 |
| Msa0802650 | MtrunA17_Chr8g0373571 | 37.061 | 313 | 140 | 11 | 39 | 347 | 65 | 324 | 4.16e-38 | 140 |
| Msa0802650 | MtrunA17_Chr8g0347741 | 32.609 | 414 | 187 | 16 | 1 | 370 | 1 | 366 | 1.23e-36 | 137 |
| Msa0802650 | MtrunA17_Chr7g0225661 | 38.710 | 93 | 52 | 2 | 255 | 347 | 59 | 146 | 3.02e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0802650 | AT2G35530.1 | 59.221 | 385 | 113 | 8 | 1 | 352 | 1 | 374 | 1.56e-140 | 406 |
| Msa0802650 | AT1G32150.1 | 56.736 | 386 | 101 | 13 | 1 | 347 | 1 | 359 | 1.00e-122 | 360 |
| Msa0802650 | AT4G36730.1 | 37.107 | 318 | 112 | 12 | 39 | 353 | 62 | 294 | 1.74e-36 | 135 |
| Msa0802650 | AT4G36730.2 | 37.224 | 317 | 111 | 12 | 39 | 353 | 62 | 292 | 1.54e-35 | 132 |
| Msa0802650 | AT2G46270.1 | 31.622 | 370 | 154 | 13 | 19 | 346 | 10 | 322 | 6.16e-32 | 124 |
| Msa0802650 | AT2G46270.3 | 31.622 | 370 | 154 | 13 | 19 | 346 | 10 | 322 | 6.16e-32 | 124 |
| Msa0802650 | AT2G46270.2 | 29.191 | 346 | 171 | 13 | 19 | 346 | 10 | 299 | 1.79e-19 | 89.4 |
| Msa0802650 | AT2G46270.4 | 29.191 | 346 | 171 | 13 | 19 | 346 | 10 | 299 | 1.79e-19 | 89.4 |
| Msa0802650 | AT4G01120.1 | 44.211 | 95 | 49 | 2 | 275 | 369 | 243 | 333 | 2.11e-16 | 80.1 |
Find 160 sgRNAs with CRISPR-Local
Find 457 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGACTGGGCCAGCTTTC+AGG | 0.108461 | 5_3:-17198228 | Msa0802650:intron |
| GGTGCTCCTGGAGCTGTTTC+TGG | 0.143125 | 5_3:-17195516 | Msa0802650:CDS |
| ATTACCACTCAAAGAGAAAT+TGG | 0.187816 | 5_3:+17198978 | None:intergenic |
| TAAATATAGGAATGGATTAT+TGG | 0.223124 | 5_3:-17195479 | Msa0802650:CDS |
| GCGTAGGAAGAAGGTGAATT+TGG | 0.230889 | 5_3:+17199083 | None:intergenic |
| GTTGCGGGAGGGGTGGTTAC+TGG | 0.250650 | 5_3:-17195399 | Msa0802650:CDS |
| AGGATCATATACTGCATTTC+GGG | 0.276345 | 5_3:-17193430 | Msa0802650:CDS |
| TTCACTGATATATTAAAGTA+TGG | 0.280019 | 5_3:-17198440 | Msa0802650:exon |
| AAAGACGAAAGCAGTCTAAT+AGG | 0.280364 | 5_3:-17194295 | Msa0802650:CDS |
| TAGGATCATATACTGCATTT+CGG | 0.320801 | 5_3:-17193431 | Msa0802650:CDS |
| CACGCTCTTGCTATTGAGTT+AGG | 0.324581 | 5_3:+17193400 | None:intergenic |
| CAGCACATGATGCCTCCTTA+TGG | 0.341092 | 5_3:-17197063 | Msa0802650:CDS |
| GGTAGTTTGAACATGATTAC+AGG | 0.349225 | 5_3:-17196606 | Msa0802650:CDS |
| ACAGTAGGAGGGGTCAAAAT+TGG | 0.356551 | 5_3:+17199041 | None:intergenic |
| CCTATATTTAAGTTTGTTGC+GGG | 0.356569 | 5_3:+17195492 | None:intergenic |
| GGTTAAGAGTAAGACAAATT+AGG | 0.360801 | 5_3:+17193282 | None:intergenic |
| TACCTTGAGAGCTGCATTCT+CGG | 0.363000 | 5_3:+17194038 | None:intergenic |
| GGATCCTTCAGAGCTTGATT+TGG | 0.372607 | 5_3:+17199001 | None:intergenic |
| ATAGGGCTCTCAATTGAAAT+CGG | 0.373544 | 5_3:-17195794 | Msa0802650:intron |
| CGTAGGAAGAAGGTGAATTT+GGG | 0.375751 | 5_3:+17199084 | None:intergenic |
| CAAGAGCGTGATCTTTGTTT+CGG | 0.376014 | 5_3:-17193387 | Msa0802650:three_prime_UTR |
| AAAAGGTCAAAAGGAAGTTT+AGG | 0.381702 | 5_3:-17196627 | Msa0802650:CDS |
| GGAGCACCACTTGCCGAGAT+AGG | 0.387899 | 5_3:+17195531 | None:intergenic |
| AATAGGAACGAAAATCTAAC+TGG | 0.388651 | 5_3:-17199277 | Msa0802650:five_prime_UTR |
| ACAGGTGAACCATCTCAAAA+TGG | 0.390659 | 5_3:-17195630 | Msa0802650:intron |
| GCCTACCACAGTTGCGGGAG+GGG | 0.400697 | 5_3:-17195409 | Msa0802650:CDS |
| ATCTCGGCAAGTGGTGCTCC+TGG | 0.408534 | 5_3:-17195528 | Msa0802650:CDS |
| GTAGGCATGGCATAAGGATA+TGG | 0.411726 | 5_3:+17196864 | None:intergenic |
| CGTCACCTGCTTGCGCAACC+TGG | 0.412809 | 5_3:+17194256 | None:intergenic |
| TTACCACTCAAAGAGAAATT+GGG | 0.415228 | 5_3:+17198979 | None:intergenic |
| AAGACGAAAGCAGTCTAATA+GGG | 0.416680 | 5_3:-17194294 | Msa0802650:CDS |
| GTTCCGCCTACCACAGTTGC+GGG | 0.416901 | 5_3:-17195414 | Msa0802650:CDS |
| TAATGCGATTTACTTCTAAT+CGG | 0.420402 | 5_3:+17194085 | None:intergenic |
| TTCTGTATAAATAATTAGTC+GGG | 0.426906 | 5_3:-17193133 | Msa0802650:three_prime_UTR |
| GGTTGTGTAGGGTGGTCATT+AGG | 0.428162 | 5_3:-17193450 | Msa0802650:CDS |
| GATTAGAAGTAAATCGCATT+AGG | 0.437599 | 5_3:-17194083 | Msa0802650:CDS |
| CCTTCGACCGCCACTAGCAC+TGG | 0.444211 | 5_3:-17198260 | Msa0802650:CDS |
| CCCGCAACAAACTTAAATAT+AGG | 0.444449 | 5_3:-17195492 | Msa0802650:CDS |
| TAGGGCTCTCAATTGAAATC+GGG | 0.448319 | 5_3:-17195793 | Msa0802650:CDS |
| ACCTGAAAGCTGGCCCAGTC+AGG | 0.449030 | 5_3:+17198227 | None:intergenic |
| GGGAATCTGCTCGGAGATCC+AGG | 0.457769 | 5_3:-17194274 | Msa0802650:CDS |
| TCCTATATTTAAGTTTGTTG+CGG | 0.459038 | 5_3:+17195491 | None:intergenic |
| TAAGATTGAATTGATGAGAA+GGG | 0.463946 | 5_3:+17199151 | None:intergenic |
| AGTAAGACAAATTAGGAATG+AGG | 0.466421 | 5_3:+17193289 | None:intergenic |
| TTACCAATCAAAAGGTCAAA+AGG | 0.467960 | 5_3:-17196636 | Msa0802650:CDS |
| TTAATCTACAGGAGAGACTT+GGG | 0.468089 | 5_3:-17193526 | Msa0802650:intron |
| ACAGCGGGGACATCTGCTAA+TGG | 0.473912 | 5_3:-17196561 | Msa0802650:CDS |
| CAGTGCATACTTCACAAAAC+GGG | 0.474326 | 5_3:-17195602 | Msa0802650:CDS |
| TCAGTGCATACTTCACAAAA+CGG | 0.475143 | 5_3:-17195603 | Msa0802650:CDS |
| CAATCAGTTTCCATGCTGGC+AGG | 0.479000 | 5_3:+17196684 | None:intergenic |
| GGAACCTTTCCGCGGAGAGC+TGG | 0.479151 | 5_3:+17195432 | None:intergenic |
| TTTAATCTACAGGAGAGACT+TGG | 0.481648 | 5_3:-17193527 | Msa0802650:intron |
| ATGGGGATACATTGCAACAT+AGG | 0.481817 | 5_3:+17197026 | None:intergenic |
| TATGTCTGTCATTCCTATCT+CGG | 0.487110 | 5_3:-17195544 | Msa0802650:CDS |
| TCAGTCACAACTTTGGCTAC+AGG | 0.487817 | 5_3:-17195358 | Msa0802650:intron |
| GAGGCCTCAGCAATACCGTT+TGG | 0.488036 | 5_3:+17196840 | None:intergenic |
| GTTTGATTAACCACTGTATG+AGG | 0.491464 | 5_3:+17195567 | None:intergenic |
| AGCAGTGAATATACAGTAGG+AGG | 0.491527 | 5_3:+17199029 | None:intergenic |
| GGGTGGTTACTGGTGGATCA+CGG | 0.495283 | 5_3:-17195389 | Msa0802650:CDS |
| TTTCTGTATAAATAATTAGT+CGG | 0.497348 | 5_3:-17193134 | Msa0802650:three_prime_UTR |
| GCGGGGCCAGAAACAGCTCC+AGG | 0.501668 | 5_3:+17195510 | None:intergenic |
| CTGGAACAGTTAATCCTGAC+TGG | 0.502822 | 5_3:-17198241 | Msa0802650:CDS |
| GGTGGTTACTGGTGGATCAC+GGG | 0.504171 | 5_3:-17195388 | Msa0802650:CDS |
| TCGGGAAAATAATGAAAAGA+AGG | 0.505244 | 5_3:-17193115 | Msa0802650:three_prime_UTR |
| TCGTTACACATGTGTTGATC+TGG | 0.509480 | 5_3:+17193497 | None:intergenic |
| CTCTCCAAATCAAGCTCTGA+AGG | 0.511423 | 5_3:-17199005 | Msa0802650:five_prime_UTR |
| AATGAACATGGTAAAACAGC+GGG | 0.512685 | 5_3:-17196576 | Msa0802650:CDS |
| GAGATCCAGGTTGCGCAAGC+AGG | 0.513179 | 5_3:-17194261 | Msa0802650:intron |
| CGCCTACCACAGTTGCGGGA+GGG | 0.514482 | 5_3:-17195410 | Msa0802650:CDS |
| TGCTCATCCATCCATGCCTC+CGG | 0.520704 | 5_3:-17196992 | Msa0802650:intron |
| GGTGAAAGTGGAAGTTATGA+AGG | 0.527913 | 5_3:-17195995 | Msa0802650:CDS |
| ATGATTACCGGAGGCATGGA+TGG | 0.528642 | 5_3:+17196985 | None:intergenic |
| GCGATTTACTTCTAATCGGA+GGG | 0.529909 | 5_3:+17194089 | None:intergenic |
| GGAACTCGTGGGTCGTCGTA+CGG | 0.531318 | 5_3:+17199241 | None:intergenic |
| TGGGGATACATTGCAACATA+GGG | 0.533477 | 5_3:+17197027 | None:intergenic |
| AGTAGCAGTGAATATACAGT+AGG | 0.533650 | 5_3:+17199026 | None:intergenic |
| AGTTATGAAGGTACTAGTGA+AGG | 0.533947 | 5_3:-17195983 | Msa0802650:CDS |
| ATAGTGTTCAGTCACAACTT+TGG | 0.537639 | 5_3:-17195365 | Msa0802650:CDS |
| TTTGGAGTAGGCATGGCATA+AGG | 0.540351 | 5_3:+17196858 | None:intergenic |
| TGCGATTTACTTCTAATCGG+AGG | 0.542152 | 5_3:+17194088 | None:intergenic |
| GTAAGACAAATTAGGAATGA+GGG | 0.542380 | 5_3:+17193290 | None:intergenic |
| GGAAATTGAGCGTAGGAAGA+AGG | 0.545805 | 5_3:+17199074 | None:intergenic |
| GGATGTGGTGGAGTACCATA+AGG | 0.547567 | 5_3:+17197048 | None:intergenic |
| GACAATGATTACCGGAGGCA+TGG | 0.549201 | 5_3:+17196981 | None:intergenic |
| ATCCCCAATTTCTCTTTGAG+TGG | 0.549840 | 5_3:-17198982 | Msa0802650:intron |
| TACCACAGTTGCGGGAGGGG+TGG | 0.550163 | 5_3:-17195406 | Msa0802650:CDS |
| GGGAAACACTCCTGCCAGCA+TGG | 0.550438 | 5_3:-17196694 | Msa0802650:CDS |
| TATGCCATGCCTACTCCAAA+CGG | 0.550779 | 5_3:-17196855 | Msa0802650:CDS |
| CTCAATTAGACCTGTGATGT+TGG | 0.552139 | 5_3:+17198364 | None:intergenic |
| ACTCGTGGGTCGTCGTACGG+TGG | 0.552979 | 5_3:+17199244 | None:intergenic |
| TTAAGATTGAATTGATGAGA+AGG | 0.554419 | 5_3:+17199150 | None:intergenic |
| GTTAATGTGTTTGTTGTTCG+CGG | 0.554514 | 5_3:+17199215 | None:intergenic |
| TCACTGATATATTAAAGTAT+GGG | 0.555082 | 5_3:-17198439 | Msa0802650:exon |
| CCGCCTACCACAGTTGCGGG+AGG | 0.555210 | 5_3:-17195411 | Msa0802650:CDS |
| TTCCGAGAATGCAGCTCTCA+AGG | 0.555646 | 5_3:-17194040 | Msa0802650:CDS |
| TTTACAATCAGTTTCCATGC+TGG | 0.556729 | 5_3:+17196680 | None:intergenic |
| TGGACAGACAGAGGTTGTGT+AGG | 0.557553 | 5_3:-17193462 | Msa0802650:CDS |
| GCAGTGAATATACAGTAGGA+GGG | 0.561436 | 5_3:+17199030 | None:intergenic |
| CTAGTTAAGAACCTGAAAGC+TGG | 0.563391 | 5_3:+17198217 | None:intergenic |
| TCCGCGGAGAGCTGGAATGT+TGG | 0.563596 | 5_3:+17195440 | None:intergenic |
| CCAGTGCTAGTGGCGGTCGA+AGG | 0.566554 | 5_3:+17198260 | None:intergenic |
| GCGGGAGGGGTGGTTACTGG+TGG | 0.570321 | 5_3:-17195396 | Msa0802650:CDS |
| ACCCCTCCCGCAACTGTGGT+AGG | 0.571144 | 5_3:+17195408 | None:intergenic |
| CTCGTGGGTCGTCGTACGGT+GGG | 0.572804 | 5_3:+17199245 | None:intergenic |
| TTGTAAACCTCCTGAAGTGA+AGG | 0.572811 | 5_3:-17196664 | Msa0802650:CDS |
| AAGATTGAATTGATGAGAAG+GGG | 0.573809 | 5_3:+17199152 | None:intergenic |
| CATTCCAGCTCTCCGCGGAA+AGG | 0.573853 | 5_3:-17195436 | Msa0802650:CDS |
| TGGATTTGCAGTGGTGAAAG+TGG | 0.577589 | 5_3:-17196007 | Msa0802650:intron |
| GCTGGAATGTTGGATGAAGT+TGG | 0.578954 | 5_3:+17195450 | None:intergenic |
| AAGTATGGGCAATAATGAGA+TGG | 0.579789 | 5_3:-17198425 | Msa0802650:exon |
| AGCAATATAATTAATGTACC+TGG | 0.580685 | 5_3:-17193174 | Msa0802650:three_prime_UTR |
| TACATTGCAACATAGGGATG+TGG | 0.580807 | 5_3:+17197033 | None:intergenic |
| CTAATGGAATTCACTCAAAG+AGG | 0.581180 | 5_3:-17196545 | Msa0802650:intron |
| GACACCGCCACCAACATCAC+AGG | 0.583308 | 5_3:-17198374 | Msa0802650:intron |
| GGACAGACAGAGGTTGTGTA+GGG | 0.586042 | 5_3:-17193461 | Msa0802650:CDS |
| AACAAACTTAAATATAGGAA+TGG | 0.588482 | 5_3:-17195487 | Msa0802650:CDS |
| GGATAAAACAGCAAAAGAGA+AGG | 0.588848 | 5_3:-17198404 | Msa0802650:CDS |
| ATTAACTGTTCCAGTGCTAG+TGG | 0.593825 | 5_3:+17198250 | None:intergenic |
| TACCACTCAAAGAGAAATTG+GGG | 0.600205 | 5_3:+17198980 | None:intergenic |
| AACCACCCCTCCCGCAACTG+TGG | 0.605113 | 5_3:+17195404 | None:intergenic |
| TCAGCAATACCGTTTGGAGT+AGG | 0.605905 | 5_3:+17196846 | None:intergenic |
| GATGAGCATATATGCCACCA+TGG | 0.610974 | 5_3:+17197007 | None:intergenic |
| GTCATTCCTATCTCGGCAAG+TGG | 0.611010 | 5_3:-17195537 | Msa0802650:CDS |
| ATTGCAACATAGGGATGTGG+TGG | 0.613657 | 5_3:+17197036 | None:intergenic |
| AACTGTTCCAGTGCTAGTGG+CGG | 0.616899 | 5_3:+17198253 | None:intergenic |
| TGTGTTTGTTGTTCGCGGAG+AGG | 0.619030 | 5_3:+17199220 | None:intergenic |
| AGATTGAATTGATGAGAAGG+GGG | 0.621107 | 5_3:+17199153 | None:intergenic |
| AGGGCTCTCAATTGAAATCG+GGG | 0.621854 | 5_3:-17195792 | Msa0802650:CDS |
| GTAGTTTGAACATGATTACA+GGG | 0.624590 | 5_3:-17196605 | Msa0802650:CDS |
| TGGAACAGTTAATCCTGACT+GGG | 0.626947 | 5_3:-17198240 | Msa0802650:CDS |
| ATGAGCATATATGCCACCAT+GGG | 0.627162 | 5_3:+17197008 | None:intergenic |
| TAGACCTGTGATGTTGGTGG+CGG | 0.632032 | 5_3:+17198370 | None:intergenic |
| TACTCCAAACGGTATTGCTG+AGG | 0.632684 | 5_3:-17196844 | Msa0802650:CDS |
| GGTTCCGCCTACCACAGTTG+CGG | 0.633178 | 5_3:-17195415 | Msa0802650:CDS |
| AATACCGTTTGGAGTAGGCA+TGG | 0.637188 | 5_3:+17196851 | None:intergenic |
| TGTTCGCGGAGAGGAACTCG+TGG | 0.639993 | 5_3:+17199229 | None:intergenic |
| TGTAACGACAGTCAACAAAG+TGG | 0.642893 | 5_3:-17193482 | Msa0802650:CDS |
| CCTCCCGCAACTGTGGTAGG+CGG | 0.645977 | 5_3:+17195411 | None:intergenic |
| GGGCTCTCAATTGAAATCGG+GGG | 0.646202 | 5_3:-17195791 | Msa0802650:CDS |
| AATTAGACCTGTGATGTTGG+TGG | 0.647291 | 5_3:+17198367 | None:intergenic |
| ACTTAATGCACCTCATACAG+TGG | 0.648863 | 5_3:-17195577 | Msa0802650:CDS |
| TAATCTACAGGAGAGACTTG+GGG | 0.650587 | 5_3:-17193525 | Msa0802650:intron |
| CAGACAGAGGTTGTGTAGGG+TGG | 0.650795 | 5_3:-17193458 | Msa0802650:CDS |
| GTTCGCGGAGAGGAACTCGT+GGG | 0.656197 | 5_3:+17199230 | None:intergenic |
| TAACCCCATTCAAAACAACA+TGG | 0.656770 | 5_3:-17193264 | Msa0802650:three_prime_UTR |
| TATGTTGCAATGTATCCCCA+TGG | 0.658872 | 5_3:-17197024 | Msa0802650:CDS |
| TCAACAAAGTGGACAGACAG+AGG | 0.662687 | 5_3:-17193471 | Msa0802650:CDS |
| CTATATTTAAGTTTGTTGCG+GGG | 0.664908 | 5_3:+17195493 | None:intergenic |
| AGTCTAATAGGGAATCTGCT+CGG | 0.674381 | 5_3:-17194283 | Msa0802650:CDS |
| AGTGCATACTTCACAAAACG+GGG | 0.677950 | 5_3:-17195601 | Msa0802650:CDS |
| CAGTGAATATACAGTAGGAG+GGG | 0.682502 | 5_3:+17199031 | None:intergenic |
| TGTGGTGGAGTACCATAAGG+AGG | 0.685282 | 5_3:+17197051 | None:intergenic |
| TAATGAACATGGTAAAACAG+CGG | 0.688598 | 5_3:-17196577 | Msa0802650:CDS |
| TGGTAGGCGGAACCTTTCCG+CGG | 0.697382 | 5_3:+17195424 | None:intergenic |
| ATTTATATAATGAACACACC+AGG | 0.707482 | 5_3:+17193156 | None:intergenic |
| TCCAACATTCCAGCTCTCCG+CGG | 0.711616 | 5_3:-17195441 | Msa0802650:CDS |
| TGAGCATATATGCCACCATG+GGG | 0.728314 | 5_3:+17197009 | None:intergenic |
| GTTGCAATGTATCCCCATGG+TGG | 0.737517 | 5_3:-17197021 | Msa0802650:CDS |
| GTGCATACTTCACAAAACGG+GGG | 0.753458 | 5_3:-17195600 | Msa0802650:CDS |
| ATGAACATGGTAAAACAGCG+GGG | 0.756524 | 5_3:-17196575 | Msa0802650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATCATAAATATAAAAG+CGG | - | chr5_3:17194693-17194712 | Msa0802650:intron | 10.0% |
| !! | GAGTAAAAAATTATTAATAA+TGG | + | chr5_3:17197985-17198004 | None:intergenic | 10.0% |
| !! | ATATAAATGTTTAAATAAAG+AGG | + | chr5_3:17198007-17198026 | None:intergenic | 10.0% |
| !!! | ATTTAAACATTTATATTTTC+TGG | - | chr5_3:17198011-17198030 | Msa0802650:intron | 10.0% |
| !!! | TAAAATCAAAATTGGATTTT+TGG | - | chr5_3:17193598-17193617 | Msa0802650:intron | 15.0% |
| !!! | TTTTGTTTTATCTATATTGA+TGG | - | chr5_3:17194025-17194044 | Msa0802650:intron | 15.0% |
| !!! | TTCTTAACTAGAAATTTTTT+TGG | - | chr5_3:17194157-17194176 | Msa0802650:intron | 15.0% |
| !!! | ACACTATTTTCTATTATTTA+CGG | - | chr5_3:17194181-17194200 | Msa0802650:intron | 15.0% |
| !! | AAATTAAAAGAATTAGAAGA+AGG | - | chr5_3:17194465-17194484 | Msa0802650:intron | 15.0% |
| !!! | TTGTAAATTGACTTATAATT+TGG | - | chr5_3:17194543-17194562 | Msa0802650:intron | 15.0% |
| !!! | TGTAAATTGACTTATAATTT+GGG | - | chr5_3:17194544-17194563 | Msa0802650:intron | 15.0% |
| !!! | AAAATGAATAATTCAGATTT+TGG | - | chr5_3:17195117-17195136 | Msa0802650:intron | 15.0% |
| !! | AATCAGATAAAAATGTTAAA+AGG | + | chr5_3:17196126-17196145 | None:intergenic | 15.0% |
| !!! | TTTTGTATTTGTGTTTTTAT+AGG | - | chr5_3:17196550-17196569 | Msa0802650:CDS | 15.0% |
| !!! | TTTGTATTTGTGTTTTTATA+GGG | - | chr5_3:17196551-17196570 | Msa0802650:CDS | 15.0% |
| !!! | ACTTATTTGAGTTTATTTAT+TGG | - | chr5_3:17198541-17198560 | Msa0802650:intron | 15.0% |
| !! | TTTCTGTATAAATAATTAGT+CGG | - | chr5_3:17199228-17199247 | Msa0802650:five_prime_UTR | 15.0% |
| !!! | TTTGTGAAAATTTTGATCTT+AGG | + | chr5_3:17193242-17193261 | None:intergenic | 20.0% |
| !!! | TCAATTTCACTTTTTATCTT+TGG | - | chr5_3:17193494-17193513 | Msa0802650:CDS | 20.0% |
| !!! | ATAATTGAATTTGCTATGTT+GGG | - | chr5_3:17193556-17193575 | Msa0802650:intron | 20.0% |
| !! | ACATAGAGTAAAATCAAAAT+TGG | - | chr5_3:17193590-17193609 | Msa0802650:intron | 20.0% |
| !! | TTCACTGATATATTAAAGTA+TGG | - | chr5_3:17193922-17193941 | Msa0802650:intron | 20.0% |
| !! | TCACTGATATATTAAAGTAT+GGG | - | chr5_3:17193923-17193942 | Msa0802650:intron | 20.0% |
| !!! | TTATCTATATTGATGGTTAA+TGG | - | chr5_3:17194032-17194051 | Msa0802650:intron | 20.0% |
| !!! | AAGGAGTATTAAATAGTAAA+GGG | - | chr5_3:17194484-17194503 | Msa0802650:intron | 20.0% |
| !! | CTTTATTGAAATTGTCTATT+TGG | + | chr5_3:17194672-17194691 | None:intergenic | 20.0% |
| !! | ACATATCAATTAAAATTTCC+CGG | - | chr5_3:17194887-17194906 | Msa0802650:intron | 20.0% |
| !!! | AGTTATTTCCATTCATTATT+GGG | + | chr5_3:17195083-17195102 | None:intergenic | 20.0% |
| !! | TAAATGAACCAAATAAAACA+CGG | + | chr5_3:17195264-17195283 | None:intergenic | 20.0% |
| !!! | TGCAATTTTTGATTACATTA+TGG | - | chr5_3:17196149-17196168 | Msa0802650:intron | 20.0% |
| !!! | GCAATTTTTGATTACATTAT+GGG | - | chr5_3:17196150-17196169 | Msa0802650:intron | 20.0% |
| !!! | TATGTTTTTTCAACTATCAT+AGG | - | chr5_3:17196527-17196546 | Msa0802650:intron | 20.0% |
| !! | GTGAAAATTAGAAACTATAT+TGG | + | chr5_3:17196644-17196663 | None:intergenic | 20.0% |
| !! | AACAAACTTAAATATAGGAA+TGG | - | chr5_3:17196875-17196894 | Msa0802650:CDS | 20.0% |
| !!! | TAAATATAGGAATGGATTAT+TGG | - | chr5_3:17196883-17196902 | Msa0802650:intron | 20.0% |
| !!! | ACTAAAATACAACTTTTATG+AGG | + | chr5_3:17197508-17197527 | None:intergenic | 20.0% |
| !!! | AAAGTTGTATTTTAGTGAAT+AGG | - | chr5_3:17197512-17197531 | Msa0802650:intron | 20.0% |
| !!! | ATATTTTCTGGTTAACTTTT+AGG | - | chr5_3:17198023-17198042 | Msa0802650:intron | 20.0% |
| !!! | TGTATGCTTTTTTTGTTAAA+AGG | - | chr5_3:17198359-17198378 | Msa0802650:intron | 20.0% |
| !! | TGAACATTTACTAAAAAAAG+AGG | + | chr5_3:17198456-17198475 | None:intergenic | 20.0% |
| !! | TTATAAGAAATGATAAATCC+TGG | + | chr5_3:17198657-17198676 | None:intergenic | 20.0% |
| !! | GATGTTAAGTCAAATAATTA+TGG | + | chr5_3:17198811-17198830 | None:intergenic | 20.0% |
| !! | TTCTGTATAAATAATTAGTC+GGG | - | chr5_3:17199229-17199248 | Msa0802650:five_prime_UTR | 20.0% |
| !! | ATCAAAAATTAGGGTTTGTT+GGG | + | chr5_3:17193172-17193191 | None:intergenic | 25.0% |
| ! | TAAGATTGAATTGATGAGAA+GGG | + | chr5_3:17193214-17193233 | None:intergenic | 25.0% |
| ! | TTAAGATTGAATTGATGAGA+AGG | + | chr5_3:17193215-17193234 | None:intergenic | 25.0% |
| !!! | CAGCTTTATTTGCTTTTAAT+TGG | - | chr5_3:17193420-17193439 | Msa0802650:exon | 25.0% |
| !!! | GATAATTGAATTTGCTATGT+TGG | - | chr5_3:17193555-17193574 | Msa0802650:intron | 25.0% |
| !! | AGAATATGCCTATACAATTT+TGG | + | chr5_3:17194231-17194250 | None:intergenic | 25.0% |
| !!! | GTTTCTTAATTTGTGTGAAA+TGG | + | chr5_3:17194367-17194386 | None:intergenic | 25.0% |
| !! | GAAACGTAGTTAATTTTGTA+TGG | - | chr5_3:17194382-17194401 | Msa0802650:intron | 25.0% |
| !!! | GAAGGAGTATTAAATAGTAA+AGG | - | chr5_3:17194483-17194502 | Msa0802650:intron | 25.0% |
| !! | GAGTTATTTCCATTCATTAT+TGG | + | chr5_3:17195084-17195103 | None:intergenic | 25.0% |
| !! | CTGAATTATTCATTTTGTAG+TGG | + | chr5_3:17195113-17195132 | None:intergenic | 25.0% |
| ! | AGAAGACTAATAAATAGTTG+AGG | + | chr5_3:17195144-17195163 | None:intergenic | 25.0% |
| ! | AAATGAACCAAATAAAACAC+GGG | + | chr5_3:17195263-17195282 | None:intergenic | 25.0% |
| ! | TCATAATTGACAATGATTAC+CGG | + | chr5_3:17195392-17195411 | None:intergenic | 25.0% |
| ! | CATTGTCAATTATGATTTCA+TGG | - | chr5_3:17195397-17195416 | Msa0802650:CDS | 25.0% |
| !!! | ACTTTTTCCCTACTTATATA+AGG | + | chr5_3:17195630-17195649 | None:intergenic | 25.0% |
| ! | AGGAAAAATTACCAATCAAA+AGG | - | chr5_3:17195718-17195737 | Msa0802650:intron | 25.0% |
| !!! | ACACCAGAAAAAGTTTTAAT+AGG | + | chr5_3:17195955-17195974 | None:intergenic | 25.0% |
| ! | ATACACAACATATTGAATCA+TGG | + | chr5_3:17196026-17196045 | None:intergenic | 25.0% |
| !!! | TATCAATGTTTTTGCTCTAT+TGG | - | chr5_3:17196280-17196299 | Msa0802650:intron | 25.0% |
| !! | TACCTTTTCTATTGAATTAC+AGG | - | chr5_3:17196714-17196733 | Msa0802650:intron | 25.0% |
| !!! | TCCTATATTTAAGTTTGTTG+CGG | + | chr5_3:17196874-17196893 | None:intergenic | 25.0% |
| ! | TAATACAGTCACAATTTGAA+AGG | + | chr5_3:17197184-17197203 | None:intergenic | 25.0% |
| !! | AATACACTTGCTAAAAAACA+AGG | + | chr5_3:17197251-17197270 | None:intergenic | 25.0% |
| ! | AAATAGTGTGTTTATATGGT+GGG | + | chr5_3:17197326-17197345 | None:intergenic | 25.0% |
| ! | AAAATAGTGTGTTTATATGG+TGG | + | chr5_3:17197327-17197346 | None:intergenic | 25.0% |
| ! | GACAAAATAGTGTGTTTATA+TGG | + | chr5_3:17197330-17197349 | None:intergenic | 25.0% |
| !! | TAAACACACTATTTTGTCTA+TGG | - | chr5_3:17197332-17197351 | Msa0802650:intron | 25.0% |
| ! | TAGTATTGTACATGTATGTT+TGG | - | chr5_3:17197573-17197592 | Msa0802650:intron | 25.0% |
| ! | AGTATTGTACATGTATGTTT+GGG | - | chr5_3:17197574-17197593 | Msa0802650:intron | 25.0% |
| ! | TAATTCTAAATGTGTAAGTG+GGG | + | chr5_3:17197756-17197775 | None:intergenic | 25.0% |
| ! | GTAATTCTAAATGTGTAAGT+GGG | + | chr5_3:17197757-17197776 | None:intergenic | 25.0% |
| ! | AGTAATTCTAAATGTGTAAG+TGG | + | chr5_3:17197758-17197777 | None:intergenic | 25.0% |
| !!! | TTAAGGTTTTAATAGCTTGT+AGG | - | chr5_3:17197847-17197866 | Msa0802650:intron | 25.0% |
| !! | ACATTGCAAGTTATTGATTA+TGG | + | chr5_3:17197918-17197937 | None:intergenic | 25.0% |
| ! | TAATGCGATTTACTTCTAAT+CGG | + | chr5_3:17198280-17198299 | None:intergenic | 25.0% |
| ! | AGGAATGAAAAGTTTAAAGA+AGG | - | chr5_3:17198379-17198398 | Msa0802650:CDS | 25.0% |
| ! | GGAATGAAAAGTTTAAAGAA+GGG | - | chr5_3:17198380-17198399 | Msa0802650:CDS | 25.0% |
| ! | ATATTAAGGAAATCTACGAA+TGG | + | chr5_3:17198777-17198796 | None:intergenic | 25.0% |
| ! | TAGATTTCCTTAATATGTGA+AGG | - | chr5_3:17198781-17198800 | Msa0802650:intron | 25.0% |
| ! | AACATCAAGATTTAATCTAC+AGG | - | chr5_3:17198825-17198844 | Msa0802650:intron | 25.0% |
| !!! | GGTCTTTTTAAGACTATAAT+AGG | + | chr5_3:17199033-17199052 | None:intergenic | 25.0% |
| ! | GGATCATATAACATAAAAAC+AGG | + | chr5_3:17199054-17199073 | None:intergenic | 25.0% |
| ! | AGCAATATAATTAATGTACC+TGG | - | chr5_3:17199188-17199207 | Msa0802650:five_prime_UTR | 25.0% |
| ! | ATTTATATAATGAACACACC+AGG | + | chr5_3:17199209-17199228 | None:intergenic | 25.0% |
| GATCAAAAATTAGGGTTTGT+TGG | + | chr5_3:17193173-17193192 | None:intergenic | 30.0% | |
| TGGGGATAGATCAAAAATTA+GGG | + | chr5_3:17193181-17193200 | None:intergenic | 30.0% | |
| TTGGGGATAGATCAAAAATT+AGG | + | chr5_3:17193182-17193201 | None:intergenic | 30.0% | |
| AAGATTGAATTGATGAGAAG+GGG | + | chr5_3:17193213-17193232 | None:intergenic | 30.0% | |
| GTCAAAATTGGCAAGAAAAA+TGG | + | chr5_3:17193312-17193331 | None:intergenic | 30.0% | |
| TTACCACTCAAAGAGAAATT+GGG | + | chr5_3:17193386-17193405 | None:intergenic | 30.0% | |
| ATTACCACTCAAAGAGAAAT+TGG | + | chr5_3:17193387-17193406 | None:intergenic | 30.0% | |
| !!! | TCATCTTGATTTTCTAGCTT+TGG | - | chr5_3:17193519-17193538 | Msa0802650:intron | 30.0% |
| ! | TGGATGATTTTGCAATGATT+AGG | - | chr5_3:17193618-17193637 | Msa0802650:intron | 30.0% |
| ! | ATGATTTTGCAATGATTAGG+AGG | - | chr5_3:17193621-17193640 | Msa0802650:intron | 30.0% |
| ! | TGATTTTGCAATGATTAGGA+GGG | - | chr5_3:17193622-17193641 | Msa0802650:intron | 30.0% |
| CATAGTTAACTTTACAGTTG+TGG | - | chr5_3:17193786-17193805 | Msa0802650:intron | 30.0% | |
| AACTTTACAGTTGTGGAATT+CGG | - | chr5_3:17193793-17193812 | Msa0802650:intron | 30.0% | |
| ATTTCGAATGAGAATGAGTA+TGG | - | chr5_3:17193829-17193848 | Msa0802650:intron | 30.0% | |
| ! | GTTATGTGTATTTTGCAGAA+TGG | - | chr5_3:17193879-17193898 | Msa0802650:intron | 30.0% |
| !! | GAAGCATTTATTGTTTTTCC+AGG | - | chr5_3:17194074-17194093 | Msa0802650:CDS | 30.0% |
| ! | TGACTTATAATTTGTGACAG+AGG | + | chr5_3:17194338-17194357 | None:intergenic | 30.0% |
| ATTATCCTTCATTAACTACG+TGG | - | chr5_3:17194435-17194454 | Msa0802650:intron | 30.0% | |
| TTATCCTTCATTAACTACGT+GGG | - | chr5_3:17194436-17194455 | Msa0802650:intron | 30.0% | |
| ! | TAAATAGTAAAGGGTGTGAT+AGG | - | chr5_3:17194493-17194512 | Msa0802650:intron | 30.0% |
| GATATGTATAATTGCATGCA+TGG | + | chr5_3:17194874-17194893 | None:intergenic | 30.0% | |
| ATTGTATTCCTTAAGCTCTA+AGG | + | chr5_3:17194996-17195015 | None:intergenic | 30.0% | |
| TTGAAACTCCCAATAATGAA+TGG | - | chr5_3:17195072-17195091 | Msa0802650:intron | 30.0% | |
| ! | AACAAGATATTTTGTACTGC+TGG | + | chr5_3:17195230-17195249 | None:intergenic | 30.0% |
| TAATTGCGGAAAATTTACAC+AGG | - | chr5_3:17195467-17195486 | Msa0802650:CDS | 30.0% | |
| AATTGCGGAAAATTTACACA+GGG | - | chr5_3:17195468-17195487 | Msa0802650:CDS | 30.0% | |
| TTACCAATCAAAAGGTCAAA+AGG | - | chr5_3:17195726-17195745 | Msa0802650:intron | 30.0% | |
| AAAAGGTCAAAAGGAAGTTT+AGG | - | chr5_3:17195735-17195754 | Msa0802650:intron | 30.0% | |
| GTAGTTTGAACATGATTACA+GGG | - | chr5_3:17195757-17195776 | Msa0802650:intron | 30.0% | |
| ACAGGGAAAAATAATGAACA+TGG | - | chr5_3:17195774-17195793 | Msa0802650:CDS | 30.0% | |
| TAATGAACATGGTAAAACAG+CGG | - | chr5_3:17195785-17195804 | Msa0802650:CDS | 30.0% | |
| ! | TCACTCAAAGAGGTAAATTT+TGG | - | chr5_3:17195827-17195846 | Msa0802650:intron | 30.0% |
| TACTGTTCGATGAAAAAGAA+TGG | + | chr5_3:17195886-17195905 | None:intergenic | 30.0% | |
| !! | GTGCCTATTAAAACTTTTTC+TGG | - | chr5_3:17195949-17195968 | Msa0802650:intron | 30.0% |
| TTATCATTCTGTAGGGATAT+GGG | + | chr5_3:17196069-17196088 | None:intergenic | 30.0% | |
| TTAAAAGGATGACACATGAT+AGG | + | chr5_3:17196111-17196130 | None:intergenic | 30.0% | |
| TATTTATCTCCTAATGCATG+AGG | - | chr5_3:17196223-17196242 | Msa0802650:intron | 30.0% | |
| AAATTGCCAGAATTTGCAAA+TGG | + | chr5_3:17196318-17196337 | None:intergenic | 30.0% | |
| ! | TTTATGCTGATTGGTATTCT+TGG | - | chr5_3:17196335-17196354 | Msa0802650:intron | 30.0% |
| TTCTAACACACATACATCAT+GGG | + | chr5_3:17196685-17196704 | None:intergenic | 30.0% | |
| CACCTGTAATTCAATAGAAA+AGG | + | chr5_3:17196719-17196738 | None:intergenic | 30.0% | |
| !! | CTATATTTAAGTTTGTTGCG+GGG | + | chr5_3:17196872-17196891 | None:intergenic | 30.0% |
| !! | CCTATATTTAAGTTTGTTGC+GGG | + | chr5_3:17196873-17196892 | None:intergenic | 30.0% |
| AAAGCATAAACATCATTGGT+CGG | + | chr5_3:17197046-17197065 | None:intergenic | 30.0% | |
| ! | ATCGAAAGCATAAACATCAT+TGG | + | chr5_3:17197050-17197069 | None:intergenic | 30.0% |
| TATGTTGAATGTAAGCAAGA+GGG | + | chr5_3:17197130-17197149 | None:intergenic | 30.0% | |
| AACATACGATGCTTTATGTT+TGG | - | chr5_3:17197144-17197163 | Msa0802650:intron | 30.0% | |
| ! | AATTACACACATTTTCATCG+AGG | - | chr5_3:17197276-17197295 | Msa0802650:intron | 30.0% |
| AGCTCATCAAAAATTGTCTA+TGG | - | chr5_3:17197367-17197386 | Msa0802650:intron | 30.0% | |
| ! | TGATAATCAGTGCTGTTAAA+TGG | + | chr5_3:17197437-17197456 | None:intergenic | 30.0% |
| TGTGACACTTATTAAAAGCT+TGG | - | chr5_3:17197545-17197564 | Msa0802650:intron | 30.0% | |
| GTATTGTACATGTATGTTTG+GGG | - | chr5_3:17197575-17197594 | Msa0802650:intron | 30.0% | |
| TGTGAAGTTATGTTTGTCAT+TGG | - | chr5_3:17197617-17197636 | Msa0802650:intron | 30.0% | |
| AAACTTCTCTATCTGAGAAA+GGG | + | chr5_3:17197812-17197831 | None:intergenic | 30.0% | |
| AAAACTTCTCTATCTGAGAA+AGG | + | chr5_3:17197813-17197832 | None:intergenic | 30.0% | |
| ! | TTCTCAGATAGAGAAGTTTT+AGG | - | chr5_3:17197813-17197832 | Msa0802650:intron | 30.0% |
| TTTAGGTAATCCACAGTTTA+AGG | - | chr5_3:17197830-17197849 | Msa0802650:intron | 30.0% | |
| GCTATTAAAACCTTAAACTG+TGG | + | chr5_3:17197843-17197862 | None:intergenic | 30.0% | |
| AATTGTCACATTTCTGATTC+CGG | - | chr5_3:17198175-17198194 | Msa0802650:intron | 30.0% | |
| GATTAGAAGTAAATCGCATT+AGG | - | chr5_3:17198279-17198298 | Msa0802650:intron | 30.0% | |
| ! | ACTACATTTGATTGTCGATT+CGG | - | chr5_3:17198494-17198513 | Msa0802650:intron | 30.0% |
| AAGTACTTGTGAGAATGTAA+GGG | - | chr5_3:17198567-17198586 | Msa0802650:intron | 30.0% | |
| TAGGATCATATACTGCATTT+CGG | - | chr5_3:17198931-17198950 | Msa0802650:intron | 30.0% | |
| GTAAGACAAATTAGGAATGA+GGG | + | chr5_3:17199075-17199094 | None:intergenic | 30.0% | |
| AGTAAGACAAATTAGGAATG+AGG | + | chr5_3:17199076-17199095 | None:intergenic | 30.0% | |
| GGTTAAGAGTAAGACAAATT+AGG | + | chr5_3:17199083-17199102 | None:intergenic | 30.0% | |
| !!! | TGATCCATGTTGTTTTGAAT+GGG | + | chr5_3:17199105-17199124 | None:intergenic | 30.0% |
| !!! | ATGATCCATGTTGTTTTGAA+TGG | + | chr5_3:17199106-17199125 | None:intergenic | 30.0% |
| TCGGGAAAATAATGAAAAGA+AGG | - | chr5_3:17199247-17199266 | Msa0802650:five_prime_UTR | 30.0% | |
| !! | GTTAATGTGTTTGTTGTTCG+CGG | + | chr5_3:17193150-17193169 | None:intergenic | 35.0% |
| AGATTGAATTGATGAGAAGG+GGG | + | chr5_3:17193212-17193231 | None:intergenic | 35.0% | |
| GAAAAATGGAAATTGAGCGT+AGG | + | chr5_3:17193298-17193317 | None:intergenic | 35.0% | |
| AGTAGCAGTGAATATACAGT+AGG | + | chr5_3:17193339-17193358 | None:intergenic | 35.0% | |
| TACCACTCAAAGAGAAATTG+GGG | + | chr5_3:17193385-17193404 | None:intergenic | 35.0% | |
| !! | TGAATTTGCTATGTTGGGTT+TGG | - | chr5_3:17193561-17193580 | Msa0802650:intron | 35.0% |
| ! | GATTTTGCAATGATTAGGAG+GGG | - | chr5_3:17193623-17193642 | Msa0802650:intron | 35.0% |
| GTTAATGGAATGGTTCATTG+CGG | - | chr5_3:17193663-17193682 | Msa0802650:intron | 35.0% | |
| AAGTATGGGCAATAATGAGA+TGG | - | chr5_3:17193937-17193956 | Msa0802650:intron | 35.0% | |
| GGATAAAACAGCAAAAGAGA+AGG | - | chr5_3:17193958-17193977 | Msa0802650:intron | 35.0% | |
| ! | GACTTATAATTTGGGACTGA+TGG | - | chr5_3:17194552-17194571 | Msa0802650:intron | 35.0% |
| CTTTGCAATATTTAGCGCAA+AGG | + | chr5_3:17194636-17194655 | None:intergenic | 35.0% | |
| AAATTCTCTACATCCTTGGT+TGG | + | chr5_3:17194825-17194844 | None:intergenic | 35.0% | |
| ! | TGCATGGAAATTTTTGCTCA+TGG | + | chr5_3:17194858-17194877 | None:intergenic | 35.0% |
| ATAAAGTCCTCATCATACAC+CGG | + | chr5_3:17194909-17194928 | None:intergenic | 35.0% | |
| !! | CCTTAAGCTCTAAGGAATTA+GGG | + | chr5_3:17194988-17195007 | None:intergenic | 35.0% |
| !! | TCCTTAAGCTCTAAGGAATT+AGG | + | chr5_3:17194989-17195008 | None:intergenic | 35.0% |
| AAACGTGTATGTCTTAACGA+AGG | - | chr5_3:17195043-17195062 | Msa0802650:intron | 35.0% | |
| AACGTGTATGTCTTAACGAA+GGG | - | chr5_3:17195044-17195063 | Msa0802650:intron | 35.0% | |
| TAATTGACAATGATTACCGG+AGG | + | chr5_3:17195389-17195408 | None:intergenic | 35.0% | |
| !!! | CAACCACTTTTTGCTAATTG+CGG | - | chr5_3:17195453-17195472 | Msa0802650:CDS | 35.0% |
| TTTCCGCAATTAGCAAAAAG+TGG | + | chr5_3:17195459-17195478 | None:intergenic | 35.0% | |
| AACACAAAAAATGCAGAAGG+GGG | + | chr5_3:17195559-17195578 | None:intergenic | 35.0% | |
| GAACACAAAAAATGCAGAAG+GGG | + | chr5_3:17195560-17195579 | None:intergenic | 35.0% | |
| GGAACACAAAAAATGCAGAA+GGG | + | chr5_3:17195561-17195580 | None:intergenic | 35.0% | |
| AGGAACACAAAAAATGCAGA+AGG | + | chr5_3:17195562-17195581 | None:intergenic | 35.0% | |
| AATAGGAAAAGGACAGACAA+AGG | + | chr5_3:17195592-17195611 | None:intergenic | 35.0% | |
| ! | TCCTTTTCCTATTCTGTGAA+GGG | - | chr5_3:17195599-17195618 | Msa0802650:CDS | 35.0% |
| GGCTTGTCCTTATATAAGTA+GGG | - | chr5_3:17195620-17195639 | Msa0802650:CDS | 35.0% | |
| TTTACAATCAGTTTCCATGC+TGG | + | chr5_3:17195685-17195704 | None:intergenic | 35.0% | |
| ! | AATTTTTCCTTCACTTCAGG+AGG | + | chr5_3:17195708-17195727 | None:intergenic | 35.0% |
| ! | GGTAATTTTTCCTTCACTTC+AGG | + | chr5_3:17195711-17195730 | None:intergenic | 35.0% |
| ! | CTTCCTTTTGACCTTTTGAT+TGG | + | chr5_3:17195732-17195751 | None:intergenic | 35.0% |
| GGTAGTTTGAACATGATTAC+AGG | - | chr5_3:17195756-17195775 | Msa0802650:intron | 35.0% | |
| AATGAACATGGTAAAACAGC+GGG | - | chr5_3:17195786-17195805 | Msa0802650:CDS | 35.0% | |
| CTAATGGAATTCACTCAAAG+AGG | - | chr5_3:17195817-17195836 | Msa0802650:intron | 35.0% | |
| TCTTGCTCAGACTTATTTGA+AGG | - | chr5_3:17195916-17195935 | Msa0802650:intron | 35.0% | |
| CATGTCCAAGAGAAAATTCT+TGG | - | chr5_3:17195977-17195996 | Msa0802650:CDS | 35.0% | |
| ! | AAGCACCAAGAATTTTCTCT+TGG | + | chr5_3:17195985-17196004 | None:intergenic | 35.0% |
| !! | AGAGAAAATTCTTGGTGCTT+TGG | - | chr5_3:17195985-17196004 | Msa0802650:CDS | 35.0% |
| GTTATCATTCTGTAGGGATA+TGG | + | chr5_3:17196070-17196089 | None:intergenic | 35.0% | |
| ATGATAGGAAACATCAACTG+CGG | + | chr5_3:17196096-17196115 | None:intergenic | 35.0% | |
| CAAATCAAGTAACTGTGTAG+GGG | + | chr5_3:17196250-17196269 | None:intergenic | 35.0% | |
| GCAAATCAAGTAACTGTGTA+GGG | + | chr5_3:17196251-17196270 | None:intergenic | 35.0% | |
| AGCAAATCAAGTAACTGTGT+AGG | + | chr5_3:17196252-17196271 | None:intergenic | 35.0% | |
| ! | AGTTTGCCATTTGCAAATTC+TGG | - | chr5_3:17196309-17196328 | Msa0802650:intron | 35.0% |
| TTCTGGCAATTTATGCTGAT+TGG | - | chr5_3:17196326-17196345 | Msa0802650:intron | 35.0% | |
| !! | AGTTATGAAGGTACTAGTGA+AGG | - | chr5_3:17196379-17196398 | Msa0802650:intron | 35.0% |
| AACTAGTGCAAAAATGTGTG+TGG | + | chr5_3:17196474-17196493 | None:intergenic | 35.0% | |
| ATAGGGCTCTCAATTGAAAT+CGG | - | chr5_3:17196568-17196587 | Msa0802650:CDS | 35.0% | |
| CTTCTAACACACATACATCA+TGG | + | chr5_3:17196686-17196705 | None:intergenic | 35.0% | |
| TCAGTGCATACTTCACAAAA+CGG | - | chr5_3:17196759-17196778 | Msa0802650:intron | 35.0% | |
| GTTTGATTAACCACTGTATG+AGG | + | chr5_3:17196798-17196817 | None:intergenic | 35.0% | |
| TATGTCTGTCATTCCTATCT+CGG | - | chr5_3:17196818-17196837 | Msa0802650:intron | 35.0% | |
| CCCGCAACAAACTTAAATAT+AGG | - | chr5_3:17196870-17196889 | Msa0802650:CDS | 35.0% | |
| ATAGTGTTCAGTCACAACTT+TGG | - | chr5_3:17196997-17197016 | Msa0802650:CDS | 35.0% | |
| ATGTTGAATGTAAGCAAGAG+GGG | + | chr5_3:17197129-17197148 | None:intergenic | 35.0% | |
| GTATGTTGAATGTAAGCAAG+AGG | + | chr5_3:17197131-17197150 | None:intergenic | 35.0% | |
| TCTTAGTGACAAATACTGAG+AGG | + | chr5_3:17197224-17197243 | None:intergenic | 35.0% | |
| !!! | GTGTTTATATGGTGGGTTTT+AGG | + | chr5_3:17197319-17197338 | None:intergenic | 35.0% |
| !! | AACAGCACTGATTATCATTG+AGG | - | chr5_3:17197440-17197459 | Msa0802650:intron | 35.0% |
| TCGATAAACACCTATTCCAA+GGG | + | chr5_3:17197668-17197687 | None:intergenic | 35.0% | |
| TTCGATAAACACCTATTCCA+AGG | + | chr5_3:17197669-17197688 | None:intergenic | 35.0% | |
| CTCGGAAAAAGAAAAACATG+AGG | + | chr5_3:17197702-17197721 | None:intergenic | 35.0% | |
| ! | CTCATGTTTTTCTTTTTCCG+AGG | - | chr5_3:17197700-17197719 | Msa0802650:intron | 35.0% |
| AATAAACAATGAGACAGCCT+CGG | + | chr5_3:17197720-17197739 | None:intergenic | 35.0% | |
| AAAGACGAAAGCAGTCTAAT+AGG | - | chr5_3:17198067-17198086 | Msa0802650:intron | 35.0% | |
| AAGACGAAAGCAGTCTAATA+GGG | - | chr5_3:17198068-17198087 | Msa0802650:intron | 35.0% | |
| GCAAACACTGAAGGAAATAT+AGG | + | chr5_3:17198147-17198166 | None:intergenic | 35.0% | |
| TATGATCAAGCAAACACTGA+AGG | + | chr5_3:17198156-17198175 | None:intergenic | 35.0% | |
| TGAAAACAGCACATACAAAC+CGG | + | chr5_3:17198197-17198216 | None:intergenic | 35.0% | |
| CAAGTACTTGTGAGAATGTA+AGG | - | chr5_3:17198566-17198585 | Msa0802650:intron | 35.0% | |
| TCAAACAGAGCATAAATCGA+TGG | - | chr5_3:17198715-17198734 | Msa0802650:intron | 35.0% | |
| CAAACAGAGCATAAATCGAT+GGG | - | chr5_3:17198716-17198735 | Msa0802650:intron | 35.0% | |
| TGGTAAGCCTTCACATATTA+AGG | + | chr5_3:17198791-17198810 | None:intergenic | 35.0% | |
| TTTAATCTACAGGAGAGACT+TGG | - | chr5_3:17198835-17198854 | Msa0802650:intron | 35.0% | |
| TTAATCTACAGGAGAGACTT+GGG | - | chr5_3:17198836-17198855 | Msa0802650:intron | 35.0% | |
| AGGATCATATACTGCATTTC+GGG | - | chr5_3:17198932-17198951 | Msa0802650:intron | 35.0% | |
| TAACCCCATTCAAAACAACA+TGG | - | chr5_3:17199098-17199117 | Msa0802650:five_prime_UTR | 35.0% | |
| !!! | GATCCATGTTGTTTTGAATG+GGG | + | chr5_3:17199104-17199123 | None:intergenic | 35.0% |
| CGTAGGAAGAAGGTGAATTT+GGG | + | chr5_3:17193281-17193300 | None:intergenic | 40.0% | |
| CAGTGAATATACAGTAGGAG+GGG | + | chr5_3:17193334-17193353 | None:intergenic | 40.0% | |
| GCAGTGAATATACAGTAGGA+GGG | + | chr5_3:17193335-17193354 | None:intergenic | 40.0% | |
| AGCAGTGAATATACAGTAGG+AGG | + | chr5_3:17193336-17193355 | None:intergenic | 40.0% | |
| ATCCCCAATTTCTCTTTGAG+TGG | - | chr5_3:17193380-17193399 | Msa0802650:three_prime_UTR | 40.0% | |
| CAATGATTAGGAGGGGAATT+AGG | - | chr5_3:17193630-17193649 | Msa0802650:intron | 40.0% | |
| !! | TTAGGATGGTGGGTTGTTAA+TGG | - | chr5_3:17193648-17193667 | Msa0802650:intron | 40.0% |
| !! | ATGGTGGGTTGTTAATGGAA+TGG | - | chr5_3:17193653-17193672 | Msa0802650:intron | 40.0% |
| AATTAGACCTGTGATGTTGG+TGG | + | chr5_3:17193998-17194017 | None:intergenic | 40.0% | |
| CTCAATTAGACCTGTGATGT+TGG | + | chr5_3:17194001-17194020 | None:intergenic | 40.0% | |
| ! | TGGTACATTTTGTGTGACGA+AGG | - | chr5_3:17194052-17194071 | Msa0802650:CDS | 40.0% |
| ATTAACTGTTCCAGTGCTAG+TGG | + | chr5_3:17194115-17194134 | None:intergenic | 40.0% | |
| TGGAACAGTTAATCCTGACT+GGG | - | chr5_3:17194122-17194141 | Msa0802650:CDS | 40.0% | |
| CTAGTTAAGAACCTGAAAGC+TGG | + | chr5_3:17194148-17194167 | None:intergenic | 40.0% | |
| ACCCTGCTCCAAAATTGTAT+AGG | - | chr5_3:17194220-17194239 | Msa0802650:intron | 40.0% | |
| !!! | GCCTATACAATTTTGGAGCA+GGG | + | chr5_3:17194224-17194243 | None:intergenic | 40.0% |
| !!! | TGCCTATACAATTTTGGAGC+AGG | + | chr5_3:17194225-17194244 | None:intergenic | 40.0% |
| GTAGTATATGCGTCATTACC+TGG | + | chr5_3:17194316-17194335 | None:intergenic | 40.0% | |
| CTTTCCCACGTAGTTAATGA+AGG | + | chr5_3:17194443-17194462 | None:intergenic | 40.0% | |
| ! | GCGGACTACATAAAACATAG+TGG | - | chr5_3:17194712-17194731 | Msa0802650:intron | 40.0% |
| ATCTCTGTGATGGTTCTTTC+TGG | + | chr5_3:17194756-17194775 | None:intergenic | 40.0% | |
| AAGAATGCTCATCTCTGTGA+TGG | + | chr5_3:17194766-17194785 | None:intergenic | 40.0% | |
| TCACAGAGATGAGCATTCTT+AGG | - | chr5_3:17194766-17194785 | Msa0802650:intron | 40.0% | |
| GCATTCTTAGGTTTAAGAGC+TGG | - | chr5_3:17194778-17194797 | Msa0802650:intron | 40.0% | |
| GAGCTGGATAGAAATGTTGT+CGG | - | chr5_3:17194794-17194813 | Msa0802650:intron | 40.0% | |
| CAGCAAATTCTCTACATCCT+TGG | + | chr5_3:17194829-17194848 | None:intergenic | 40.0% | |
| CAAGGATGTAGAGAATTTGC+TGG | - | chr5_3:17194827-17194846 | Msa0802650:intron | 40.0% | |
| AAATTTCCCGGTGTATGATG+AGG | - | chr5_3:17194899-17194918 | Msa0802650:intron | 40.0% | |
| TAAAGTCCTCATCATACACC+GGG | + | chr5_3:17194908-17194927 | None:intergenic | 40.0% | |
| TTTATGCTCTCTCATGTGCT+AGG | - | chr5_3:17194924-17194943 | Msa0802650:intron | 40.0% | |
| CCCTAATTCCTTAGAGCTTA+AGG | - | chr5_3:17194985-17195004 | Msa0802650:intron | 40.0% | |
| !! | ACACTTGCCCGTGTTTTATT+TGG | - | chr5_3:17195253-17195272 | Msa0802650:intron | 40.0% |
| TACATTGCAACATAGGGATG+TGG | + | chr5_3:17195332-17195351 | None:intergenic | 40.0% | |
| TGGGGATACATTGCAACATA+GGG | + | chr5_3:17195338-17195357 | None:intergenic | 40.0% | |
| ATGGGGATACATTGCAACAT+AGG | + | chr5_3:17195339-17195358 | None:intergenic | 40.0% | |
| TATGTTGCAATGTATCCCCA+TGG | - | chr5_3:17195338-17195357 | Msa0802650:intron | 40.0% | |
| ATGAGCATATATGCCACCAT+GGG | + | chr5_3:17195357-17195376 | None:intergenic | 40.0% | |
| !! | GCAAAAAGTGGTTGGTGAAT+TGG | + | chr5_3:17195447-17195466 | None:intergenic | 40.0% |
| CGCAATTAGCAAAAAGTGGT+TGG | + | chr5_3:17195455-17195474 | None:intergenic | 40.0% | |
| ! | GTCCTTTTCCTATTCTGTGA+AGG | - | chr5_3:17195598-17195617 | Msa0802650:CDS | 40.0% |
| GGGCTTGTCCTTATATAAGT+AGG | - | chr5_3:17195619-17195638 | Msa0802650:CDS | 40.0% | |
| AGTAACACGAGTTTACATGC+AGG | - | chr5_3:17195647-17195666 | Msa0802650:intron | 40.0% | |
| GTAACACGAGTTTACATGCA+GGG | - | chr5_3:17195648-17195667 | Msa0802650:intron | 40.0% | |
| TTGTAAACCTCCTGAAGTGA+AGG | - | chr5_3:17195698-17195717 | Msa0802650:intron | 40.0% | |
| ATGAACATGGTAAAACAGCG+GGG | - | chr5_3:17195787-17195806 | Msa0802650:CDS | 40.0% | |
| !! | GAAAATTCTTGGTGCTTTGG+AGG | - | chr5_3:17195988-17196007 | Msa0802650:CDS | 40.0% |
| CGGGAAGTTATCATTCTGTA+GGG | + | chr5_3:17196076-17196095 | None:intergenic | 40.0% | |
| TGATAGGAAACATCAACTGC+GGG | + | chr5_3:17196095-17196114 | None:intergenic | 40.0% | |
| TGGTATTCTTGGATTTGCAG+TGG | - | chr5_3:17196346-17196365 | Msa0802650:intron | 40.0% | |
| GGTGAAAGTGGAAGTTATGA+AGG | - | chr5_3:17196367-17196386 | Msa0802650:intron | 40.0% | |
| ! | GTAAGTACTGTGACGTTCAT+CGG | - | chr5_3:17196424-17196443 | Msa0802650:intron | 40.0% |
| TAGGGCTCTCAATTGAAATC+GGG | - | chr5_3:17196569-17196588 | Msa0802650:CDS | 40.0% | |
| !! | GCTGGATTCTTTTGAAGGTT+TGG | - | chr5_3:17196598-17196617 | Msa0802650:CDS | 40.0% |
| ACAGGTGAACCATCTCAAAA+TGG | - | chr5_3:17196732-17196751 | Msa0802650:intron | 40.0% | |
| !!! | ACTGAACTGCCATTTTGAGA+TGG | + | chr5_3:17196744-17196763 | None:intergenic | 40.0% |
| CAGTGCATACTTCACAAAAC+GGG | - | chr5_3:17196760-17196779 | Msa0802650:intron | 40.0% | |
| AGTGCATACTTCACAAAACG+GGG | - | chr5_3:17196761-17196780 | Msa0802650:intron | 40.0% | |
| ACTTAATGCACCTCATACAG+TGG | - | chr5_3:17196785-17196804 | Msa0802650:intron | 40.0% | |
| ! | ATTTTCATCGAGGTAGTCGA+AGG | - | chr5_3:17197286-17197305 | Msa0802650:intron | 40.0% |
| ! | CAATTTTTGATGAGCTGCCA+TGG | + | chr5_3:17197363-17197382 | None:intergenic | 40.0% |
| !! | GACGAAGACTATTTCGAGTT+AGG | - | chr5_3:17197471-17197490 | Msa0802650:intron | 40.0% |
| !!! | TGTAGGAGTAGCTTTTTTCC+TGG | - | chr5_3:17197864-17197883 | Msa0802650:intron | 40.0% |
| !!! | GTAGGAGTAGCTTTTTTCCT+GGG | - | chr5_3:17197865-17197884 | Msa0802650:intron | 40.0% |
| !!! | TAGGAGTAGCTTTTTTCCTG+GGG | - | chr5_3:17197866-17197885 | Msa0802650:intron | 40.0% |
| AAACATGAGTTACATTCCCC+AGG | + | chr5_3:17197885-17197904 | None:intergenic | 40.0% | |
| AGTCTAATAGGGAATCTGCT+CGG | - | chr5_3:17198079-17198098 | Msa0802650:intron | 40.0% | |
| !!! | GGTTTGTATGTGCTGTTTTC+AGG | - | chr5_3:17198196-17198215 | Msa0802650:intron | 40.0% |
| GCGATTTACTTCTAATCGGA+GGG | + | chr5_3:17198276-17198295 | None:intergenic | 40.0% | |
| TGCGATTTACTTCTAATCGG+AGG | + | chr5_3:17198277-17198296 | None:intergenic | 40.0% | |
| TAAAGAAGGGAACCCATGAA+AGG | - | chr5_3:17198393-17198412 | Msa0802650:CDS | 40.0% | |
| AAAGAAGGGAACCCATGAAA+GGG | - | chr5_3:17198394-17198413 | Msa0802650:CDS | 40.0% | |
| ! | CATAAATCGATGGGCTTAGA+TGG | - | chr5_3:17198725-17198744 | Msa0802650:intron | 40.0% |
| !! | CGAATGGTGTAGGTTTTAGT+TGG | + | chr5_3:17198761-17198780 | None:intergenic | 40.0% |
| AGGAAATCTACGAATGGTGT+AGG | + | chr5_3:17198771-17198790 | None:intergenic | 40.0% | |
| TAATCTACAGGAGAGACTTG+GGG | - | chr5_3:17198837-17198856 | Msa0802650:intron | 40.0% | |
| ! | TCGTTACACATGTGTTGATC+TGG | + | chr5_3:17198868-17198887 | None:intergenic | 40.0% |
| TGTAACGACAGTCAACAAAG+TGG | - | chr5_3:17198880-17198899 | Msa0802650:intron | 40.0% | |
| ! | CAAGAGCGTGATCTTTGTTT+CGG | - | chr5_3:17198975-17198994 | Msa0802650:intron | 40.0% |
| TGAGAAGGGGGCAAAGAATT+GGG | + | chr5_3:17193200-17193219 | None:intergenic | 45.0% | |
| ATGAGAAGGGGGCAAAGAAT+TGG | + | chr5_3:17193201-17193220 | None:intergenic | 45.0% | |
| GCGTAGGAAGAAGGTGAATT+TGG | + | chr5_3:17193282-17193301 | None:intergenic | 45.0% | |
| GGAAATTGAGCGTAGGAAGA+AGG | + | chr5_3:17193291-17193310 | None:intergenic | 45.0% | |
| ACAGTAGGAGGGGTCAAAAT+TGG | + | chr5_3:17193324-17193343 | None:intergenic | 45.0% | |
| ! | CTCTCCAAATCAAGCTCTGA+AGG | - | chr5_3:17193357-17193376 | Msa0802650:three_prime_UTR | 45.0% |
| GGATCCTTCAGAGCTTGATT+TGG | + | chr5_3:17193364-17193383 | None:intergenic | 45.0% | |
| GATTAGGAGGGGAATTAGGA+TGG | - | chr5_3:17193634-17193653 | Msa0802650:intron | 45.0% | |
| CTGGAACAGTTAATCCTGAC+TGG | - | chr5_3:17194121-17194140 | Msa0802650:CDS | 45.0% | |
| TATTCTCCTATGCCTCCACA+TGG | - | chr5_3:17194245-17194264 | Msa0802650:intron | 45.0% | |
| ! | ATGAATCCATGTGGAGGCAT+AGG | + | chr5_3:17194254-17194273 | None:intergenic | 45.0% |
| TATGCCTCCACATGGATTCA+TGG | - | chr5_3:17194253-17194272 | Msa0802650:intron | 45.0% | |
| CACATATAAGGGTGAGCTTG+GGG | + | chr5_3:17194287-17194306 | None:intergenic | 45.0% | |
| CCACATATAAGGGTGAGCTT+GGG | + | chr5_3:17194288-17194307 | None:intergenic | 45.0% | |
| CCAAGCTCACCCTTATATGT+GGG | - | chr5_3:17194286-17194305 | Msa0802650:CDS | 45.0% | |
| CAAGCTCACCCTTATATGTG+GGG | - | chr5_3:17194287-17194306 | Msa0802650:CDS | 45.0% | |
| ATTGCAACATAGGGATGTGG+TGG | + | chr5_3:17195329-17195348 | None:intergenic | 45.0% | |
| TGAGCATATATGCCACCATG+GGG | + | chr5_3:17195356-17195375 | None:intergenic | 45.0% | |
| GATGAGCATATATGCCACCA+TGG | + | chr5_3:17195358-17195377 | None:intergenic | 45.0% | |
| GTAGGCATGGCATAAGGATA+TGG | + | chr5_3:17195501-17195520 | None:intergenic | 45.0% | |
| ! | TTTGGAGTAGGCATGGCATA+AGG | + | chr5_3:17195507-17195526 | None:intergenic | 45.0% |
| TATGCCATGCCTACTCCAAA+CGG | - | chr5_3:17195507-17195526 | Msa0802650:CDS | 45.0% | |
| ! | AATACCGTTTGGAGTAGGCA+TGG | + | chr5_3:17195514-17195533 | None:intergenic | 45.0% |
| ! | TCAGCAATACCGTTTGGAGT+AGG | + | chr5_3:17195519-17195538 | None:intergenic | 45.0% |
| TACTCCAAACGGTATTGCTG+AGG | - | chr5_3:17195518-17195537 | Msa0802650:CDS | 45.0% | |
| GGACAGACAAAGGAGAAAGA+AGG | + | chr5_3:17195582-17195601 | None:intergenic | 45.0% | |
| GCCCTTCACAGAATAGGAAA+AGG | + | chr5_3:17195603-17195622 | None:intergenic | 45.0% | |
| TGGATGCACTAAGTCACGTA+AGG | + | chr5_3:17195866-17195885 | None:intergenic | 45.0% | |
| GCGGGAAGTTATCATTCTGT+AGG | + | chr5_3:17196077-17196096 | None:intergenic | 45.0% | |
| TGGATTTGCAGTGGTGAAAG+TGG | - | chr5_3:17196355-17196374 | Msa0802650:intron | 45.0% | |
| AGGGCTCTCAATTGAAATCG+GGG | - | chr5_3:17196570-17196589 | Msa0802650:CDS | 45.0% | |
| ! | GACAGGCTGGATTCTTTTGA+AGG | - | chr5_3:17196593-17196612 | Msa0802650:CDS | 45.0% |
| GTGCATACTTCACAAAACGG+GGG | - | chr5_3:17196762-17196781 | Msa0802650:intron | 45.0% | |
| GCTGGAATGTTGGATGAAGT+TGG | + | chr5_3:17196915-17196934 | None:intergenic | 45.0% | |
| TCAGTCACAACTTTGGCTAC+AGG | - | chr5_3:17197004-17197023 | Msa0802650:CDS | 45.0% | |
| !! | TGTTAAATGGTGTCGCACCA+TGG | + | chr5_3:17197424-17197443 | None:intergenic | 45.0% |
| GATTCATAACTCGATGCCCT+TGG | - | chr5_3:17197649-17197668 | Msa0802650:intron | 45.0% | |
| TAACTCGATGCCCTTGGAAT+AGG | - | chr5_3:17197655-17197674 | Msa0802650:intron | 45.0% | |
| TGAAGGAAATATAGGCCACG+TGG | + | chr5_3:17198139-17198158 | None:intergenic | 45.0% | |
| TACCTTGAGAGCTGCATTCT+CGG | + | chr5_3:17198327-17198346 | None:intergenic | 45.0% | |
| AAGAAGGGAACCCATGAAAG+GGG | - | chr5_3:17198395-17198414 | Msa0802650:CDS | 45.0% | |
| GGAAGTAACTCCCCTTTCAT+GGG | + | chr5_3:17198408-17198427 | None:intergenic | 45.0% | |
| ! | TACTTCCCCTGGTTTGAACT+CGG | - | chr5_3:17198421-17198440 | Msa0802650:CDS | 45.0% |
| !! | TTGTCGATTCGGCAGACTAA+AGG | - | chr5_3:17198505-17198524 | Msa0802650:intron | 45.0% |
| !! | CGGCAGACTAAAGGTATTGT+TGG | - | chr5_3:17198514-17198533 | Msa0802650:intron | 45.0% |
| ! | AGAATGTAAGGGAGAGCGTA+TGG | - | chr5_3:17198578-17198597 | Msa0802650:intron | 45.0% |
| ! | CGATGGGCTTAGATGGAATT+TGG | - | chr5_3:17198732-17198751 | Msa0802650:intron | 45.0% |
| TCAACAAAGTGGACAGACAG+AGG | - | chr5_3:17198891-17198910 | Msa0802650:intron | 45.0% | |
| !! | CACGCTCTTGCTATTGAGTT+AGG | + | chr5_3:17198965-17198984 | None:intergenic | 45.0% |
| !!! | TAAATTTTAAGATATATAAA+AGG | - | chr5_3:17196495-17196514 | Msa0802650:intron | 5.0% |
| !! | TGTGTTTGTTGTTCGCGGAG+AGG | + | chr5_3:17193145-17193164 | None:intergenic | 50.0% |
| GAGAAGGGGGCAAAGAATTG+GGG | + | chr5_3:17193199-17193218 | None:intergenic | 50.0% | |
| TAGGAGGGGAATTAGGATGG+TGG | - | chr5_3:17193637-17193656 | Msa0802650:intron | 50.0% | |
| AGGAGGGGAATTAGGATGGT+GGG | - | chr5_3:17193638-17193657 | Msa0802650:intron | 50.0% | |
| ! | TAGACCTGTGATGTTGGTGG+CGG | + | chr5_3:17193995-17194014 | None:intergenic | 50.0% |
| AACTGTTCCAGTGCTAGTGG+CGG | + | chr5_3:17194112-17194131 | None:intergenic | 50.0% | |
| CTTGACGCCATGAATCCATG+TGG | + | chr5_3:17194263-17194282 | None:intergenic | 50.0% | |
| CCCAAGCTCACCCTTATATG+TGG | - | chr5_3:17194285-17194304 | Msa0802650:CDS | 50.0% | |
| CCCACATATAAGGGTGAGCT+TGG | + | chr5_3:17194289-17194308 | None:intergenic | 50.0% | |
| CCTGGACACCCCACATATAA+GGG | + | chr5_3:17194298-17194317 | None:intergenic | 50.0% | |
| ACCTGGACACCCCACATATA+AGG | + | chr5_3:17194299-17194318 | None:intergenic | 50.0% | |
| CAGCACATGATGCCTCCTTA+TGG | - | chr5_3:17195299-17195318 | Msa0802650:intron | 50.0% | |
| ! | TGTGGTGGAGTACCATAAGG+AGG | + | chr5_3:17195314-17195333 | None:intergenic | 50.0% |
| ! | GGATGTGGTGGAGTACCATA+AGG | + | chr5_3:17195317-17195336 | None:intergenic | 50.0% |
| GTTGCAATGTATCCCCATGG+TGG | - | chr5_3:17195341-17195360 | Msa0802650:intron | 50.0% | |
| ! | ATGATTACCGGAGGCATGGA+TGG | + | chr5_3:17195380-17195399 | None:intergenic | 50.0% |
| GACAATGATTACCGGAGGCA+TGG | + | chr5_3:17195384-17195403 | None:intergenic | 50.0% | |
| GCAGAAGGGGGAAAAACTCA+CGG | + | chr5_3:17195547-17195566 | None:intergenic | 50.0% | |
| GGACAAGCCCTTCACAGAAT+AGG | + | chr5_3:17195609-17195628 | None:intergenic | 50.0% | |
| CAATCAGTTTCCATGCTGGC+AGG | + | chr5_3:17195681-17195700 | None:intergenic | 50.0% | |
| TGTAGGGGTCCTCATGCATT+AGG | + | chr5_3:17196235-17196254 | None:intergenic | 50.0% | |
| GGGCTCTCAATTGAAATCGG+GGG | - | chr5_3:17196571-17196590 | Msa0802650:CDS | 50.0% | |
| CTCAATTGAAATCGGGGGAC+AGG | - | chr5_3:17196576-17196595 | Msa0802650:CDS | 50.0% | |
| GTCATTCCTATCTCGGCAAG+TGG | - | chr5_3:17196825-17196844 | Msa0802650:intron | 50.0% | |
| TTCATCGAGGTAGTCGAAGG+CGG | - | chr5_3:17197289-17197308 | Msa0802650:intron | 50.0% | |
| ! | TTTTGTCTATGGCGCTGCCA+TGG | - | chr5_3:17197343-17197362 | Msa0802650:intron | 50.0% |
| !! | TAAATGGTGTCGCACCATGG+CGG | + | chr5_3:17197421-17197440 | None:intergenic | 50.0% |
| TTCCGAGAATGCAGCTCTCA+AGG | - | chr5_3:17198322-17198341 | Msa0802650:intron | 50.0% | |
| GGGAAGTAACTCCCCTTTCA+TGG | + | chr5_3:17198409-17198428 | None:intergenic | 50.0% | |
| ! | ACTTCCCCTGGTTTGAACTC+GGG | - | chr5_3:17198422-17198441 | Msa0802650:CDS | 50.0% |
| AAGTCCCGAGTTCAAACCAG+GGG | + | chr5_3:17198429-17198448 | None:intergenic | 50.0% | |
| CAAGTCCCGAGTTCAAACCA+GGG | + | chr5_3:17198430-17198449 | None:intergenic | 50.0% | |
| ACAAGTCCCGAGTTCAAACC+AGG | + | chr5_3:17198431-17198450 | None:intergenic | 50.0% | |
| CTGGAGAGCTCGTGGAAATA+TGG | + | chr5_3:17198638-17198657 | None:intergenic | 50.0% | |
| CATATTTCCACGAGCTCTCC+AGG | - | chr5_3:17198636-17198655 | Msa0802650:intron | 50.0% | |
| GATAAATCCTGGAGAGCTCG+TGG | + | chr5_3:17198646-17198665 | None:intergenic | 50.0% | |
| TGGACAGACAGAGGTTGTGT+AGG | - | chr5_3:17198900-17198919 | Msa0802650:intron | 50.0% | |
| GGACAGACAGAGGTTGTGTA+GGG | - | chr5_3:17198901-17198920 | Msa0802650:intron | 50.0% | |
| GGTTGTGTAGGGTGGTCATT+AGG | - | chr5_3:17198912-17198931 | Msa0802650:intron | 50.0% | |
| GACGCCATGAATCCATGTGG+AGG | + | chr5_3:17194260-17194279 | None:intergenic | 55.0% | |
| ! | CCCTTATATGTGGGGTGTCC+AGG | - | chr5_3:17194295-17194314 | Msa0802650:CDS | 55.0% |
| GTTGTCGGACTCTCCAACCA+AGG | - | chr5_3:17194809-17194828 | Msa0802650:intron | 55.0% | |
| TGCTCATCCATCCATGCCTC+CGG | - | chr5_3:17195370-17195389 | Msa0802650:CDS | 55.0% | |
| GAGGCCTCAGCAATACCGTT+TGG | + | chr5_3:17195525-17195544 | None:intergenic | 55.0% | |
| GAAGGGGGAAAAACTCACGG+AGG | + | chr5_3:17195544-17195563 | None:intergenic | 55.0% | |
| ACAGCGGGGACATCTGCTAA+TGG | - | chr5_3:17195801-17195820 | Msa0802650:intron | 55.0% | |
| ATTGAAATCGGGGGACAGGC+TGG | - | chr5_3:17196580-17196599 | Msa0802650:CDS | 55.0% | |
| TCCAACATTCCAGCTCTCCG+CGG | - | chr5_3:17196921-17196940 | Msa0802650:intron | 55.0% | |
| ! | GGGTGGTTACTGGTGGATCA+CGG | - | chr5_3:17196973-17196992 | Msa0802650:intron | 55.0% |
| ! | GGTGGTTACTGGTGGATCAC+GGG | - | chr5_3:17196974-17196993 | Msa0802650:intron | 55.0% |
| GAAAGGGGAGTTACTTCCCC+TGG | - | chr5_3:17198410-17198429 | Msa0802650:CDS | 55.0% | |
| CAGACAGAGGTTGTGTAGGG+TGG | - | chr5_3:17198904-17198923 | Msa0802650:intron | 55.0% | |
| GGAACTCGTGGGTCGTCGTA+CGG | + | chr5_3:17193124-17193143 | None:intergenic | 60.0% | |
| GTTCGCGGAGAGGAACTCGT+GGG | + | chr5_3:17193135-17193154 | None:intergenic | 60.0% | |
| TGTTCGCGGAGAGGAACTCG+TGG | + | chr5_3:17193136-17193155 | None:intergenic | 60.0% | |
| GACACCGCCACCAACATCAC+AGG | - | chr5_3:17193988-17194007 | Msa0802650:intron | 60.0% | |
| TCCTGACTGGGCCAGCTTTC+AGG | - | chr5_3:17194134-17194153 | Msa0802650:CDS | 60.0% | |
| ACCTGAAAGCTGGCCCAGTC+AGG | + | chr5_3:17194138-17194157 | None:intergenic | 60.0% | |
| GGGAAACACTCCTGCCAGCA+TGG | - | chr5_3:17195668-17195687 | Msa0802650:intron | 60.0% | |
| ! | GGAGCACCACTTGCCGAGAT+AGG | + | chr5_3:17196834-17196853 | None:intergenic | 60.0% |
| ATCTCGGCAAGTGGTGCTCC+TGG | - | chr5_3:17196834-17196853 | Msa0802650:intron | 60.0% | |
| ! | GGTGCTCCTGGAGCTGTTTC+TGG | - | chr5_3:17196846-17196865 | Msa0802650:CDS | 60.0% |
| TCCGCGGAGAGCTGGAATGT+TGG | + | chr5_3:17196925-17196944 | None:intergenic | 60.0% | |
| CATTCCAGCTCTCCGCGGAA+AGG | - | chr5_3:17196926-17196945 | Msa0802650:intron | 60.0% | |
| TGGTAGGCGGAACCTTTCCG+CGG | + | chr5_3:17196941-17196960 | None:intergenic | 60.0% | |
| GGTTCCGCCTACCACAGTTG+CGG | - | chr5_3:17196947-17196966 | Msa0802650:intron | 60.0% | |
| GTTCCGCCTACCACAGTTGC+GGG | - | chr5_3:17196948-17196967 | Msa0802650:intron | 60.0% | |
| TCGAGGTAGTCGAAGGCGGA+AGG | - | chr5_3:17197293-17197312 | Msa0802650:intron | 60.0% | |
| GGGAATCTGCTCGGAGATCC+AGG | - | chr5_3:17198088-17198107 | Msa0802650:intron | 60.0% | |
| GAGATCCAGGTTGCGCAAGC+AGG | - | chr5_3:17198101-17198120 | Msa0802650:intron | 60.0% | |
| AGGTGACGTCGAGTTCCACG+TGG | - | chr5_3:17198121-17198140 | Msa0802650:intron | 60.0% | |
| CTCGTGGGTCGTCGTACGGT+GGG | + | chr5_3:17193120-17193139 | None:intergenic | 65.0% | |
| ACTCGTGGGTCGTCGTACGG+TGG | + | chr5_3:17193121-17193140 | None:intergenic | 65.0% | |
| CCAGTGCTAGTGGCGGTCGA+AGG | + | chr5_3:17194105-17194124 | None:intergenic | 65.0% | |
| CCTTCGACCGCCACTAGCAC+TGG | - | chr5_3:17194102-17194121 | Msa0802650:CDS | 65.0% | |
| GGAACCTTTCCGCGGAGAGC+TGG | + | chr5_3:17196933-17196952 | None:intergenic | 65.0% | |
| CCTCCCGCAACTGTGGTAGG+CGG | + | chr5_3:17196954-17196973 | None:intergenic | 65.0% | |
| CGCCTACCACAGTTGCGGGA+GGG | - | chr5_3:17196952-17196971 | Msa0802650:intron | 65.0% | |
| GCCTACCACAGTTGCGGGAG+GGG | - | chr5_3:17196953-17196972 | Msa0802650:intron | 65.0% | |
| ACCCCTCCCGCAACTGTGGT+AGG | + | chr5_3:17196957-17196976 | None:intergenic | 65.0% | |
| TACCACAGTTGCGGGAGGGG+TGG | - | chr5_3:17196956-17196975 | Msa0802650:intron | 65.0% | |
| AACCACCCCTCCCGCAACTG+TGG | + | chr5_3:17196961-17196980 | None:intergenic | 65.0% | |
| GTTGCGGGAGGGGTGGTTAC+TGG | - | chr5_3:17196963-17196982 | Msa0802650:intron | 65.0% | |
| TCCACCATGCCACTCCGCCA+TGG | - | chr5_3:17197404-17197423 | Msa0802650:intron | 65.0% | |
| ! | ACCATGGCGGAGTGGCATGG+TGG | + | chr5_3:17197408-17197427 | None:intergenic | 65.0% |
| CGTCACCTGCTTGCGCAACC+TGG | + | chr5_3:17198109-17198128 | None:intergenic | 65.0% | |
| TGGCGGTCGAAGGCTGCTCC+TGG | + | chr5_3:17194095-17194114 | None:intergenic | 70.0% | |
| GCGGGGCCAGAAACAGCTCC+AGG | + | chr5_3:17196855-17196874 | None:intergenic | 70.0% | |
| CCGCCTACCACAGTTGCGGG+AGG | - | chr5_3:17196951-17196970 | Msa0802650:intron | 70.0% | |
| GCGGGAGGGGTGGTTACTGG+TGG | - | chr5_3:17196966-17196985 | Msa0802650:intron | 70.0% | |
| ! | CGCACCATGGCGGAGTGGCA+TGG | + | chr5_3:17197411-17197430 | None:intergenic | 70.0% |
| ! | GGTGTCGCACCATGGCGGAG+TGG | + | chr5_3:17197416-17197435 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 17193088 | 17199296 | 17193088 | ID=Msa0802650;Name=Msa0802650 |
| chr5_3 | mRNA | 17193088 | 17199296 | 17193088 | ID=Msa0802650-mRNA-1;Parent=Msa0802650;Name=Msa0802650-mRNA-1;_AED=0.07;_eAED=0.07;_QI=358|0.81|0.91|1|0.81|0.75|12|335|386 |
| chr5_3 | exon | 17193088 | 17193537 | 17193088 | ID=Msa0802650-mRNA-1:exon:7177;Parent=Msa0802650-mRNA-1 |
| chr5_3 | exon | 17194036 | 17194166 | 17194036 | ID=Msa0802650-mRNA-1:exon:7176;Parent=Msa0802650-mRNA-1 |
| chr5_3 | exon | 17194262 | 17194339 | 17194262 | ID=Msa0802650-mRNA-1:exon:7175;Parent=Msa0802650-mRNA-1 |
| chr5_3 | exon | 17195359 | 17195648 | 17195359 | ID=Msa0802650-mRNA-1:exon:7174;Parent=Msa0802650-mRNA-1 |
| chr5_3 | exon | 17195770 | 17195812 | 17195770 | ID=Msa0802650-mRNA-1:exon:7173;Parent=Msa0802650-mRNA-1 |
| chr5_3 | exon | 17195961 | 17196018 | 17195961 | ID=Msa0802650-mRNA-1:exon:7172;Parent=Msa0802650-mRNA-1 |
| chr5_3 | exon | 17196546 | 17196715 | 17196546 | ID=Msa0802650-mRNA-1:exon:7171;Parent=Msa0802650-mRNA-1 |
| chr5_3 | exon | 17196839 | 17196895 | 17196839 | ID=Msa0802650-mRNA-1:exon:7170;Parent=Msa0802650-mRNA-1 |
| chr5_3 | exon | 17196993 | 17197082 | 17196993 | ID=Msa0802650-mRNA-1:exon:7169;Parent=Msa0802650-mRNA-1 |
| chr5_3 | exon | 17198229 | 17198288 | 17198229 | ID=Msa0802650-mRNA-1:exon:7168;Parent=Msa0802650-mRNA-1 |
| chr5_3 | exon | 17198375 | 17198487 | 17198375 | ID=Msa0802650-mRNA-1:exon:7167;Parent=Msa0802650-mRNA-1 |
| chr5_3 | exon | 17198983 | 17199296 | 17198983 | ID=Msa0802650-mRNA-1:exon:7166;Parent=Msa0802650-mRNA-1 |
| chr5_3 | five_prime_UTR | 17198983 | 17199296 | 17198983 | ID=Msa0802650-mRNA-1:five_prime_utr;Parent=Msa0802650-mRNA-1 |
| chr5_3 | five_prime_UTR | 17198444 | 17198487 | 17198444 | ID=Msa0802650-mRNA-1:five_prime_utr;Parent=Msa0802650-mRNA-1 |
| chr5_3 | CDS | 17198375 | 17198443 | 17198375 | ID=Msa0802650-mRNA-1:cds;Parent=Msa0802650-mRNA-1 |
| chr5_3 | CDS | 17198229 | 17198288 | 17198229 | ID=Msa0802650-mRNA-1:cds;Parent=Msa0802650-mRNA-1 |
| chr5_3 | CDS | 17196993 | 17197082 | 17196993 | ID=Msa0802650-mRNA-1:cds;Parent=Msa0802650-mRNA-1 |
| chr5_3 | CDS | 17196839 | 17196895 | 17196839 | ID=Msa0802650-mRNA-1:cds;Parent=Msa0802650-mRNA-1 |
| chr5_3 | CDS | 17196546 | 17196715 | 17196546 | ID=Msa0802650-mRNA-1:cds;Parent=Msa0802650-mRNA-1 |
| chr5_3 | CDS | 17195961 | 17196018 | 17195961 | ID=Msa0802650-mRNA-1:cds;Parent=Msa0802650-mRNA-1 |
| chr5_3 | CDS | 17195770 | 17195812 | 17195770 | ID=Msa0802650-mRNA-1:cds;Parent=Msa0802650-mRNA-1 |
| chr5_3 | CDS | 17195359 | 17195648 | 17195359 | ID=Msa0802650-mRNA-1:cds;Parent=Msa0802650-mRNA-1 |
| chr5_3 | CDS | 17194262 | 17194339 | 17194262 | ID=Msa0802650-mRNA-1:cds;Parent=Msa0802650-mRNA-1 |
| chr5_3 | CDS | 17194036 | 17194166 | 17194036 | ID=Msa0802650-mRNA-1:cds;Parent=Msa0802650-mRNA-1 |
| chr5_3 | CDS | 17193423 | 17193537 | 17193423 | ID=Msa0802650-mRNA-1:cds;Parent=Msa0802650-mRNA-1 |
| chr5_3 | three_prime_UTR | 17193088 | 17193422 | 17193088 | ID=Msa0802650-mRNA-1:three_prime_utr;Parent=Msa0802650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
