Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802560 | XP_024640501.2 | 86.058 | 416 | 49 | 3 | 7 | 422 | 103 | 509 | 0.0 | 734 |
Msa0802560 | XP_024640501.2 | 95.146 | 103 | 5 | 0 | 422 | 524 | 613 | 715 | 2.75e-50 | 194 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802560 | A0A2K3P756 | 81.796 | 401 | 52 | 2 | 41 | 422 | 1 | 399 | 0.0 | 677 |
Msa0802560 | A0A2K3P756 | 96.970 | 99 | 3 | 0 | 422 | 520 | 503 | 601 | 1.80e-48 | 188 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0719590 | Msa0802560 | 0.846337 | 2.314674e-59 | -8.615850e-47 |
Msa0802560 | Msa0840960 | 0.893895 | 4.102829e-75 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802560 | MtrunA17_Chr5g0410341 | 68.849 | 443 | 113 | 5 | 3 | 422 | 101 | 541 | 0.0 | 611 |
Msa0802560 | MtrunA17_Chr5g0410341 | 91.176 | 102 | 9 | 0 | 422 | 523 | 645 | 746 | 2.21e-50 | 184 |
Msa0802560 | MtrunA17_Chr5g0410171 | 70.698 | 430 | 112 | 4 | 3 | 422 | 104 | 529 | 0.0 | 598 |
Msa0802560 | MtrunA17_Chr5g0410171 | 88.119 | 101 | 12 | 0 | 422 | 522 | 633 | 733 | 5.24e-49 | 180 |
Msa0802560 | MtrunA17_Chr5g0410291 | 87.245 | 196 | 21 | 1 | 41 | 236 | 1 | 192 | 3.57e-123 | 359 |
Msa0802560 | MtrunA17_Chr5g0410211 | 85.787 | 197 | 27 | 1 | 41 | 236 | 1 | 197 | 3.31e-118 | 346 |
Msa0802560 | MtrunA17_Chr6g0456101 | 41.687 | 415 | 210 | 12 | 25 | 424 | 141 | 538 | 1.35e-83 | 275 |
Msa0802560 | MtrunA17_Chr6g0456101 | 57.831 | 83 | 35 | 0 | 434 | 516 | 652 | 734 | 1.18e-22 | 102 |
Msa0802560 | MtrunA17_Chr6g0457101 | 39.904 | 416 | 189 | 12 | 25 | 424 | 115 | 485 | 1.38e-80 | 265 |
Msa0802560 | MtrunA17_Chr6g0457101 | 53.922 | 102 | 47 | 0 | 422 | 523 | 587 | 688 | 8.61e-22 | 99.4 |
Msa0802560 | MtrunA17_Chr5g0410201 | 95.122 | 123 | 6 | 0 | 300 | 422 | 1 | 123 | 1.18e-79 | 252 |
Msa0802560 | MtrunA17_Chr5g0410201 | 95.146 | 103 | 5 | 0 | 422 | 524 | 227 | 329 | 2.58e-56 | 191 |
Msa0802560 | MtrunA17_Chr5g0410271 | 92.562 | 121 | 9 | 0 | 302 | 422 | 2 | 122 | 1.74e-75 | 241 |
Msa0802560 | MtrunA17_Chr5g0410271 | 95.146 | 103 | 5 | 0 | 422 | 524 | 226 | 328 | 3.34e-57 | 193 |
Msa0802560 | MtrunA17_Chr5g0410581 | 37.585 | 439 | 214 | 16 | 22 | 416 | 159 | 581 | 3.89e-61 | 214 |
Msa0802560 | MtrunA17_Chr5g0410581 | 45.714 | 105 | 52 | 1 | 422 | 521 | 691 | 795 | 1.96e-17 | 85.9 |
Msa0802560 | MtrunA17_Chr5g0410181 | 88.350 | 103 | 12 | 0 | 422 | 524 | 33 | 135 | 3.27e-55 | 181 |
Msa0802560 | MtrunA17_Chr5g0410381 | 43.678 | 261 | 113 | 6 | 11 | 249 | 1 | 249 | 4.00e-55 | 185 |
Msa0802560 | MtrunA17_Chr5g0410191 | 86.275 | 102 | 14 | 0 | 422 | 523 | 92 | 193 | 1.28e-50 | 172 |
Msa0802560 | MtrunA17_Chr5g0410461 | 40.304 | 263 | 96 | 6 | 217 | 424 | 1 | 257 | 1.33e-46 | 169 |
Msa0802560 | MtrunA17_Chr5g0410461 | 59.615 | 104 | 37 | 2 | 422 | 520 | 359 | 462 | 1.80e-23 | 103 |
Msa0802560 | MtrunA17_Chr6g0456141 | 54.839 | 155 | 63 | 4 | 274 | 424 | 30 | 181 | 8.30e-45 | 162 |
Msa0802560 | MtrunA17_Chr6g0456141 | 54.902 | 102 | 46 | 0 | 422 | 523 | 283 | 384 | 1.88e-27 | 114 |
Msa0802560 | MtrunA17_Chr5g0410411 | 52.113 | 142 | 65 | 2 | 45 | 185 | 171 | 310 | 9.29e-34 | 130 |
Msa0802560 | MtrunA17_Chr6g0456151 | 43.548 | 186 | 90 | 5 | 1 | 181 | 112 | 287 | 1.04e-33 | 129 |
Msa0802560 | MtrunA17_Chr5g0410501 | 37.175 | 269 | 138 | 8 | 204 | 444 | 39 | 304 | 1.85e-33 | 129 |
Msa0802560 | MtrunA17_Chr5g0410371 | 65.217 | 92 | 30 | 1 | 333 | 424 | 1 | 90 | 5.04e-30 | 119 |
Msa0802560 | MtrunA17_Chr5g0410371 | 66.019 | 103 | 31 | 1 | 422 | 520 | 192 | 294 | 5.50e-28 | 114 |
Msa0802560 | MtrunA17_Chr5g0410471 | 53.636 | 110 | 49 | 1 | 45 | 154 | 205 | 312 | 6.44e-28 | 114 |
Msa0802560 | MtrunA17_Chr2g0297701 | 27.723 | 404 | 205 | 14 | 25 | 424 | 48 | 368 | 4.59e-26 | 112 |
Msa0802560 | MtrunA17_Chr2g0297701 | 42.453 | 106 | 52 | 3 | 422 | 522 | 470 | 571 | 4.28e-16 | 81.3 |
Msa0802560 | MtrunA17_Chr5g0410561 | 48.092 | 131 | 63 | 3 | 51 | 181 | 89 | 214 | 8.30e-23 | 96.7 |
Msa0802560 | MtrunA17_Chr5g0410451 | 40.650 | 123 | 61 | 2 | 411 | 521 | 113 | 235 | 2.71e-21 | 93.2 |
Msa0802560 | MtrunA17_Chr5g0410541 | 48.571 | 105 | 49 | 2 | 422 | 521 | 112 | 216 | 6.00e-21 | 91.7 |
Msa0802560 | MtrunA17_Chr3g0096941 | 24.433 | 397 | 249 | 13 | 21 | 410 | 32 | 384 | 7.61e-21 | 96.3 |
Msa0802560 | MtrunA17_Chr5g0443001 | 24.250 | 400 | 258 | 12 | 21 | 413 | 30 | 391 | 3.16e-19 | 91.3 |
Msa0802560 | MtrunA17_Chr5g0443001 | 45.192 | 104 | 56 | 1 | 422 | 524 | 502 | 605 | 5.42e-17 | 84.0 |
Msa0802560 | MtrunA17_Chr5g0410551 | 54.118 | 85 | 36 | 2 | 333 | 416 | 1 | 83 | 7.30e-19 | 82.8 |
Msa0802560 | MtrunA17_Chr3g0100741 | 23.678 | 397 | 251 | 12 | 21 | 410 | 32 | 383 | 2.30e-18 | 88.6 |
Msa0802560 | MtrunA17_Chr2g0297491 | 44.000 | 100 | 55 | 1 | 422 | 520 | 278 | 377 | 7.53e-17 | 82.8 |
Msa0802560 | MtrunA17_Chr2g0297491 | 30.370 | 135 | 87 | 2 | 295 | 424 | 45 | 177 | 5.75e-11 | 64.3 |
Msa0802560 | MtrunA17_Chr3g0102001 | 29.386 | 228 | 137 | 7 | 25 | 238 | 22 | 239 | 1.43e-16 | 83.2 |
Msa0802560 | MtrunA17_Chr2g0297481 | 41.228 | 114 | 62 | 3 | 414 | 524 | 364 | 475 | 1.02e-15 | 79.7 |
Msa0802560 | MtrunA17_Chr2g0286551 | 24.703 | 421 | 233 | 13 | 57 | 410 | 42 | 445 | 2.02e-15 | 79.3 |
Msa0802560 | MtrunA17_Chr2g0297681 | 40.404 | 99 | 58 | 1 | 422 | 519 | 590 | 688 | 2.80e-14 | 75.9 |
Msa0802560 | MtrunA17_Chr2g0297691 | 40.385 | 104 | 53 | 3 | 422 | 520 | 592 | 691 | 7.79e-14 | 74.3 |
Msa0802560 | MtrunA17_Chr3g0098541 | 29.381 | 194 | 115 | 6 | 57 | 238 | 9 | 192 | 1.09e-13 | 72.8 |
Msa0802560 | MtrunA17_Chr5g0410441 | 48.718 | 78 | 37 | 2 | 348 | 424 | 1 | 76 | 4.67e-13 | 65.9 |
Msa0802560 | MtrunA17_Chr2g0297651 | 39.000 | 100 | 60 | 1 | 422 | 520 | 591 | 690 | 7.20e-13 | 71.2 |
Msa0802560 | MtrunA17_Chr2g0297711 | 30.921 | 152 | 93 | 5 | 32 | 182 | 58 | 198 | 2.16e-12 | 69.3 |
Msa0802560 | MtrunA17_Chr3g0100301 | 37.895 | 95 | 52 | 1 | 422 | 516 | 310 | 397 | 2.96e-12 | 68.6 |
Msa0802560 | MtrunA17_Chr2g0286571 | 25.893 | 224 | 143 | 8 | 20 | 235 | 4 | 212 | 3.02e-12 | 67.8 |
Msa0802560 | MtrunA17_Chr2g0286601 | 25.893 | 224 | 143 | 8 | 20 | 235 | 4 | 212 | 3.59e-12 | 68.9 |
Msa0802560 | MtrunA17_Chr2g0286601 | 39.326 | 89 | 47 | 1 | 414 | 502 | 572 | 653 | 1.05e-11 | 67.4 |
Msa0802560 | MtrunA17_Chr5g0410511 | 35.455 | 110 | 66 | 1 | 417 | 521 | 87 | 196 | 1.02e-11 | 64.3 |
Msa0802560 | MtrunA17_Chr3g0098291 | 31.217 | 189 | 112 | 7 | 55 | 236 | 56 | 233 | 1.08e-11 | 65.1 |
Msa0802560 | MtrunA17_Chr1g0211541 | 29.474 | 190 | 113 | 8 | 32 | 216 | 6 | 179 | 1.85e-11 | 66.6 |
Msa0802560 | MtrunA17_Chr1g0211531 | 27.895 | 190 | 121 | 7 | 31 | 218 | 29 | 204 | 3.73e-11 | 65.5 |
Msa0802560 | MtrunA17_Chr2g0284541 | 23.342 | 407 | 237 | 13 | 57 | 407 | 37 | 424 | 7.74e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0802560 | AT3G18670.2 | 30.221 | 407 | 251 | 10 | 22 | 419 | 50 | 432 | 2.42e-56 | 199 |
Msa0802560 | AT3G18670.2 | 47.525 | 101 | 50 | 2 | 422 | 520 | 539 | 638 | 2.61e-17 | 85.5 |
Msa0802560 | AT5G04690.2 | 26.877 | 413 | 255 | 9 | 13 | 418 | 67 | 439 | 4.88e-31 | 127 |
Msa0802560 | AT5G04690.2 | 42.424 | 99 | 56 | 1 | 422 | 520 | 548 | 645 | 1.49e-13 | 73.9 |
Msa0802560 | AT3G18670.1 | 34.667 | 225 | 122 | 9 | 22 | 237 | 50 | 258 | 6.30e-28 | 118 |
Msa0802560 | AT3G18670.1 | 24.688 | 320 | 200 | 7 | 123 | 419 | 76 | 377 | 5.67e-18 | 87.8 |
Msa0802560 | AT3G18670.1 | 47.525 | 101 | 50 | 2 | 422 | 520 | 484 | 583 | 2.69e-17 | 85.5 |
Msa0802560 | AT5G04690.3 | 26.329 | 414 | 242 | 11 | 13 | 418 | 67 | 425 | 3.40e-27 | 116 |
Msa0802560 | AT5G04690.3 | 42.424 | 99 | 56 | 1 | 422 | 520 | 534 | 631 | 1.42e-13 | 73.9 |
Msa0802560 | AT5G04700.2 | 26.551 | 403 | 256 | 8 | 21 | 418 | 80 | 447 | 5.41e-27 | 114 |
Msa0802560 | AT5G04700.1 | 26.683 | 401 | 258 | 8 | 21 | 418 | 80 | 447 | 5.48e-27 | 115 |
Msa0802560 | AT5G04700.1 | 43.000 | 100 | 56 | 1 | 422 | 520 | 556 | 655 | 1.78e-14 | 76.6 |
Msa0802560 | AT5G04680.1 | 25.792 | 442 | 277 | 13 | 6 | 418 | 44 | 463 | 7.58e-25 | 109 |
Msa0802560 | AT5G04680.1 | 37.374 | 99 | 62 | 0 | 422 | 520 | 581 | 679 | 2.36e-12 | 70.1 |
Msa0802560 | AT5G04680.4 | 26.353 | 425 | 267 | 12 | 6 | 418 | 44 | 434 | 3.33e-24 | 107 |
Msa0802560 | AT5G04680.4 | 37.374 | 99 | 62 | 0 | 422 | 520 | 552 | 650 | 2.05e-12 | 70.1 |
Msa0802560 | AT5G04690.1 | 25.245 | 408 | 234 | 8 | 13 | 418 | 67 | 405 | 4.55e-24 | 106 |
Msa0802560 | AT5G04690.1 | 42.424 | 99 | 56 | 1 | 422 | 520 | 514 | 611 | 1.58e-13 | 73.6 |
Msa0802560 | AT5G04680.2 | 27.326 | 344 | 204 | 10 | 82 | 418 | 7 | 311 | 1.86e-21 | 98.2 |
Msa0802560 | AT5G04680.2 | 37.374 | 99 | 62 | 0 | 422 | 520 | 429 | 527 | 3.12e-12 | 69.3 |
Msa0802560 | AT5G04730.1 | 25.135 | 370 | 224 | 12 | 69 | 424 | 58 | 388 | 2.92e-18 | 88.6 |
Msa0802560 | AT5G04730.1 | 36.697 | 109 | 65 | 1 | 416 | 520 | 480 | 588 | 3.41e-13 | 72.8 |
Msa0802560 | AT3G54070.1 | 29.143 | 175 | 108 | 6 | 21 | 189 | 49 | 213 | 4.53e-14 | 72.8 |
Msa0802560 | AT5G35810.1 | 36.538 | 104 | 65 | 1 | 422 | 524 | 232 | 335 | 1.31e-12 | 69.7 |
Msa0802560 | AT5G04680.3 | 37.374 | 99 | 62 | 0 | 422 | 520 | 538 | 636 | 1.88e-12 | 70.5 |
Msa0802560 | AT3G54065.1 | 44.776 | 67 | 37 | 0 | 417 | 483 | 113 | 179 | 5.85e-12 | 66.2 |
Find 100 sgRNAs with CRISPR-Local
Find 470 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCATCTGGCTGGAAATTT+AGG | 0.125517 | 5_3:-17011029 | Msa0802560:CDS |
AAGCTAACCCTGACCTATTA+TGG | 0.190354 | 5_3:-17011196 | Msa0802560:CDS |
TACCAAACACTTTGCTATAT+TGG | 0.211568 | 5_3:+17013537 | None:intergenic |
ATACATGATAAAACTGTAAA+TGG | 0.215912 | 5_3:-17011101 | Msa0802560:CDS |
TTCACTTGCTATGCTCTTAA+AGG | 0.220345 | 5_3:-17007449 | Msa0802560:CDS |
ACATATTCACATGTCATTTC+AGG | 0.226779 | 5_3:-17012077 | Msa0802560:CDS |
ATTTCTTCCAACCGAGTTCT+AGG | 0.242650 | 5_3:+17013394 | None:intergenic |
CATGCGTGCCAATGCATATA+AGG | 0.246329 | 5_3:+17013131 | None:intergenic |
ATAAAAGTGCAAAACTTATA+TGG | 0.270625 | 5_3:-17012874 | Msa0802560:CDS |
TGTATCAATGCAGAAATATT+TGG | 0.271929 | 5_3:-17013328 | Msa0802560:intron |
TGCATCTGGCTGGAAATTTA+GGG | 0.279473 | 5_3:-17011028 | Msa0802560:CDS |
GGTTTATTGAGAGCGGTAAT+TGG | 0.301812 | 5_3:-17013768 | Msa0802560:CDS |
ATGCAAAAGCATTCATGAAT+AGG | 0.306685 | 5_3:-17013741 | Msa0802560:CDS |
ACTTAAGCGGCAGAGACTTT+AGG | 0.331258 | 5_3:+17007533 | None:intergenic |
ACTTCAGTCCTGCTATTCAT+TGG | 0.354216 | 5_3:-17007589 | Msa0802560:CDS |
CTTCTCTGTGGTGTCCATGA+TGG | 0.354652 | 5_3:-17007485 | Msa0802560:CDS |
ACTAATCAGTAAGTTTCATT+TGG | 0.359252 | 5_3:+17007315 | None:intergenic |
TGTATCAATTGTTGTTCTAA+AGG | 0.363281 | 5_3:-17012839 | Msa0802560:CDS |
CAGAGAAGAAAAGCATAATC+AGG | 0.369758 | 5_3:+17007500 | None:intergenic |
AACAGGAATTTCACCATCAT+TGG | 0.371227 | 5_3:+17013465 | None:intergenic |
TGATAATACCCTCTTGCATC+TGG | 0.372207 | 5_3:-17011042 | Msa0802560:CDS |
TATGTCATTTGCCAGTATTC+CGG | 0.372475 | 5_3:-17007401 | Msa0802560:CDS |
TGTGGGCAAGTGGCAATTGC+GGG | 0.384511 | 5_3:+17013190 | None:intergenic |
CTTCATGTTGCAGTGATTGC+TGG | 0.392823 | 5_3:-17013673 | Msa0802560:CDS |
TCAATAGCCCATAATAGGTC+AGG | 0.405110 | 5_3:+17011188 | None:intergenic |
AAAGTGTTTGGTAGAGAAGA+AGG | 0.405299 | 5_3:-17013527 | Msa0802560:CDS |
AAGAACAATCACCGGAATAC+TGG | 0.406609 | 5_3:+17007390 | None:intergenic |
ATCTGATTCAGTTTCAGATT+CGG | 0.409441 | 5_3:+17013164 | None:intergenic |
TTCCCAAGTGGCAATAGATA+TGG | 0.413602 | 5_3:-17013099 | Msa0802560:CDS |
TTAGCAATATTAAAATTGTC+TGG | 0.415689 | 5_3:-17012052 | Msa0802560:intron |
CATTTCTTTGTGTCCCTTAG+CGG | 0.426364 | 5_3:+17013432 | None:intergenic |
TCACTTGCTATGCTCTTAAA+GGG | 0.427681 | 5_3:-17007448 | Msa0802560:CDS |
CAGTTTCAGATTCGGATTTG+TGG | 0.429263 | 5_3:+17013172 | None:intergenic |
GCTCTTGTTGCTGAGTTGAC+TGG | 0.432007 | 5_3:-17013565 | Msa0802560:CDS |
TGGTGAAGGAAGGGAAAGAT+AGG | 0.434543 | 5_3:-17013627 | Msa0802560:CDS |
TACCAATATAGCAAAGTGTT+TGG | 0.435024 | 5_3:-17013539 | Msa0802560:CDS |
AAGAAGGGAGGGCAGGTAGT+TGG | 0.435320 | 5_3:-17013511 | Msa0802560:CDS |
TGTTCTTCTTGCAGCCGCTA+AGG | 0.442297 | 5_3:-17013446 | Msa0802560:CDS |
TCTGATCTTCACCGAAGATC+TGG | 0.442488 | 5_3:-17010999 | Msa0802560:intron |
AGTTTCAGATTCGGATTTGT+GGG | 0.445354 | 5_3:+17013173 | None:intergenic |
TAAAAGTGCAAAACTTATAT+GGG | 0.449997 | 5_3:-17012873 | Msa0802560:CDS |
TGCAAAAGCATTCATGAATA+GGG | 0.450302 | 5_3:-17013740 | Msa0802560:CDS |
TTAGCGGCTGCAAGAAGAAC+AGG | 0.452684 | 5_3:+17013448 | None:intergenic |
AGCTAACCCTGACCTATTAT+GGG | 0.458098 | 5_3:-17011195 | Msa0802560:CDS |
TATTTCTGCATTGATACATC+GGG | 0.460797 | 5_3:+17013333 | None:intergenic |
GGTAGAGAAGAAGGGAGGGC+AGG | 0.472180 | 5_3:-17013518 | Msa0802560:CDS |
GGAGAGCAGGACCAGATCTT+CGG | 0.475928 | 5_3:+17010988 | None:intergenic |
GTTCTTCTTGCAGCCGCTAA+GGG | 0.477882 | 5_3:-17013445 | Msa0802560:CDS |
TCAACTCAGCAACAAGAGCT+AGG | 0.480624 | 5_3:+17013569 | None:intergenic |
GTGGCAATTGCGGGAATCGT+TGG | 0.487167 | 5_3:+17013199 | None:intergenic |
GTGAAGAAATTGGTGAAGGA+AGG | 0.488215 | 5_3:-17013637 | Msa0802560:CDS |
AATACCCTCTTGCATCTGGC+TGG | 0.489835 | 5_3:-17011038 | Msa0802560:CDS |
TACCGCTCTCAATAAACCTA+TGG | 0.496198 | 5_3:+17013773 | None:intergenic |
AACGGCGCGTTATGCAGAAA+AGG | 0.500771 | 5_3:-17007560 | Msa0802560:CDS |
ATATTTCTGCATTGATACAT+CGG | 0.510537 | 5_3:+17013332 | None:intergenic |
ATCCATATCTATTGCCACTT+GGG | 0.515490 | 5_3:+17013097 | None:intergenic |
ATGCGTGCCAATGCATATAA+GGG | 0.517366 | 5_3:+17013132 | None:intergenic |
TTAGAATTCCAATGAATAGC+AGG | 0.532264 | 5_3:+17007581 | None:intergenic |
CGTGCAACCCTTATATGCAT+TGG | 0.533202 | 5_3:-17013139 | Msa0802560:CDS |
GTTTGGTAGAGAAGAAGGGA+GGG | 0.534499 | 5_3:-17013522 | Msa0802560:CDS |
TTGTGGGCAAGTGGCAATTG+CGG | 0.539731 | 5_3:+17013189 | None:intergenic |
AAGTGTTTGGTAGAGAAGAA+GGG | 0.539988 | 5_3:-17013526 | Msa0802560:CDS |
TGTTTGGTAGAGAAGAAGGG+AGG | 0.542467 | 5_3:-17013523 | Msa0802560:CDS |
AATCCATATCTATTGCCACT+TGG | 0.556724 | 5_3:+17013096 | None:intergenic |
GCAATAGATATGGATTCATA+CGG | 0.560821 | 5_3:-17013089 | Msa0802560:CDS |
GCTATTCATTGGAATTCTAA+CGG | 0.563684 | 5_3:-17007578 | Msa0802560:CDS |
CCAGAAAATGAGATTATGAC+GGG | 0.568037 | 5_3:-17014685 | Msa0802560:intron |
TAAGGAATCTGAACTGAGAG+AGG | 0.568722 | 5_3:-17011288 | Msa0802560:CDS |
CTCCATAGGTTTATTGAGAG+CGG | 0.570313 | 5_3:-17013775 | Msa0802560:CDS |
GATTCGGATTTGTGGGCAAG+TGG | 0.570721 | 5_3:+17013180 | None:intergenic |
TGAAGAAATTGGTGAAGGAA+GGG | 0.574748 | 5_3:-17013636 | Msa0802560:CDS |
TTTCCACGTCTTCTTCGGGA+AGG | 0.575968 | 5_3:-17013702 | Msa0802560:CDS |
CAACTCAAAACATCTTTCAC+AGG | 0.580981 | 5_3:-17012811 | Msa0802560:intron |
ATGCTCTTAAAGGGACATCA+AGG | 0.582246 | 5_3:-17007439 | Msa0802560:CDS |
TTATCTATGAAGACCAATGA+TGG | 0.582929 | 5_3:-17013478 | Msa0802560:CDS |
AGCACAGAAAGCAACCATCA+TGG | 0.585868 | 5_3:+17007471 | None:intergenic |
ATGTTGCAAGCAGCTAAGCA+TGG | 0.587732 | 5_3:-17011248 | Msa0802560:CDS |
TTGCCACTTGGGAACACAGA+AGG | 0.594143 | 5_3:+17013108 | None:intergenic |
CAACTCAGCAACAAGAGCTA+GGG | 0.594380 | 5_3:+17013570 | None:intergenic |
GAATCTGAAACTGAATCAGA+TGG | 0.598732 | 5_3:-17013162 | Msa0802560:CDS |
ATGATAAAACTGTAAATGGA+CGG | 0.602518 | 5_3:-17011097 | Msa0802560:CDS |
AATTGTGAAGAAATTGGTGA+AGG | 0.605805 | 5_3:-17013641 | Msa0802560:CDS |
AGTCCTTCCCGAAGAAGACG+TGG | 0.609112 | 5_3:+17013699 | None:intergenic |
CAATAGCCCATAATAGGTCA+GGG | 0.609144 | 5_3:+17011189 | None:intergenic |
AGAGAAGAAAAGCATAATCA+GGG | 0.609965 | 5_3:+17007501 | None:intergenic |
TAAAACTGTAAATGGACGGA+AGG | 0.611261 | 5_3:-17011093 | Msa0802560:CDS |
TCAATATTTCAAGCACTAGA+CGG | 0.613649 | 5_3:+17011339 | None:intergenic |
ATGAAGAGTCGCAACTGTGA+AGG | 0.615755 | 5_3:+17007364 | None:intergenic |
TTCACTATAGATCACTCCAT+AGG | 0.620086 | 5_3:-17013789 | Msa0802560:CDS |
GCCAGAAAATGAGATTATGA+CGG | 0.621282 | 5_3:-17014686 | Msa0802560:CDS |
AGATCTTCGGTGAAGATCAG+AGG | 0.623561 | 5_3:+17011001 | None:intergenic |
GAAGGTACAAGAACAATCAC+CGG | 0.632232 | 5_3:+17007382 | None:intergenic |
ATGCCTTCTGTGTTCCCAAG+TGG | 0.637179 | 5_3:-17013111 | Msa0802560:CDS |
TATGGAGTGATCTATAGTGA+AGG | 0.637838 | 5_3:+17013791 | None:intergenic |
AATTTCCAGCCAGATGCAAG+AGG | 0.644750 | 5_3:+17011033 | None:intergenic |
ATTTCCAGCCAGATGCAAGA+GGG | 0.653848 | 5_3:+17011034 | None:intergenic |
CTTCGGTGAAGATCAGAGGA+AGG | 0.655276 | 5_3:+17011005 | None:intergenic |
TTGAGTTCATAGATGCAATG+AGG | 0.660248 | 5_3:-17011220 | Msa0802560:CDS |
GTGAAAATGAAAGACAATCG+TGG | 0.663038 | 5_3:-17013601 | Msa0802560:CDS |
TTAGAAGCAAAACACCATTG+TGG | 0.726643 | 5_3:+17013356 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAGTTTAATTAATGTTAA+TGG | - | chr5_3:17008752-17008771 | Msa0802560:intron | 10.0% |
!! | TAAATGAAAGTTATTAAAAA+TGG | + | chr5_3:17009917-17009936 | None:intergenic | 10.0% |
!!! | TTTTCTTTCTTTTTAAAGTT+TGG | + | chr5_3:17007405-17007424 | None:intergenic | 15.0% |
!!! | TAAAATATATGTTAATTTGC+AGG | - | chr5_3:17008198-17008217 | Msa0802560:intron | 15.0% |
!!! | GTCTATATCTTTTTTATTAT+CGG | - | chr5_3:17008984-17009003 | Msa0802560:intron | 15.0% |
!!! | ATATTTTTACTTTGCATTTA+TGG | + | chr5_3:17009027-17009046 | None:intergenic | 15.0% |
!! | TTTAATACAAGTATGATTTA+AGG | - | chr5_3:17009078-17009097 | Msa0802560:intron | 15.0% |
!!! | ATAAATTGTTTAATTTGCTA+TGG | + | chr5_3:17009597-17009616 | None:intergenic | 15.0% |
!!! | TTTTAATAACTTTCATTTAC+AGG | - | chr5_3:17009918-17009937 | Msa0802560:intron | 15.0% |
!! | AACAAAAATTGAAACAAAAA+GGG | + | chr5_3:17012014-17012033 | None:intergenic | 15.0% |
!! | CATAACTCTTTATAAAAGAT+GGG | + | chr5_3:17008036-17008055 | None:intergenic | 20.0% |
!!! | ATATAGACTTACTTTTGTAA+AGG | + | chr5_3:17008972-17008991 | None:intergenic | 20.0% |
!!! | ATAAAAGTGCAAAACTTATA+TGG | - | chr5_3:17009156-17009175 | Msa0802560:intron | 20.0% |
!!! | TAAAAGTGCAAAACTTATAT+GGG | - | chr5_3:17009157-17009176 | Msa0802560:intron | 20.0% |
!! | TTAGCAATATTAAAATTGTC+TGG | - | chr5_3:17009978-17009997 | Msa0802560:intron | 20.0% |
!! | AAGTAGTTATAACTTAGTAT+AGG | - | chr5_3:17010087-17010106 | Msa0802560:intron | 20.0% |
!!! | CTTTTCTACAACTTATTATA+TGG | + | chr5_3:17010512-17010531 | None:intergenic | 20.0% |
!! | ATAATAAGTTGTAGAAAAGT+AGG | - | chr5_3:17010513-17010532 | Msa0802560:intron | 20.0% |
!! | TAATAAGTTGTAGAAAAGTA+GGG | - | chr5_3:17010514-17010533 | Msa0802560:intron | 20.0% |
!!! | CCTTAAATTCTTGAATTTTT+TGG | + | chr5_3:17010727-17010746 | None:intergenic | 20.0% |
!! | CCAAAAAATTCAAGAATTTA+AGG | - | chr5_3:17010724-17010743 | Msa0802560:intron | 20.0% |
!! | ATACATGATAAAACTGTAAA+TGG | - | chr5_3:17010929-17010948 | Msa0802560:intron | 20.0% |
!! | ATAAAATTTCTCTTTGCATT+TGG | + | chr5_3:17011066-17011085 | None:intergenic | 20.0% |
!!! | AAATGCAAAGAGAAATTTTA+TGG | - | chr5_3:17011065-17011084 | Msa0802560:CDS | 20.0% |
!! | TAACATAAGGTTTATCAAAT+AGG | + | chr5_3:17011160-17011179 | None:intergenic | 20.0% |
!! | AATCAAGATCTTATAACATA+AGG | + | chr5_3:17011173-17011192 | None:intergenic | 20.0% |
!! | TATGATAAAGTTTATATGCT+TGG | + | chr5_3:17011207-17011226 | None:intergenic | 20.0% |
!! | TAAACTTTATCATAGCATAA+TGG | - | chr5_3:17011213-17011232 | Msa0802560:CDS | 20.0% |
!! | AAACTTTATCATAGCATAAT+GGG | - | chr5_3:17011214-17011233 | Msa0802560:CDS | 20.0% |
!! | GAACAAAAATTGAAACAAAA+AGG | + | chr5_3:17012015-17012034 | None:intergenic | 20.0% |
!! | TGAAAATTGCAATTGTAAAT+GGG | + | chr5_3:17012616-17012635 | None:intergenic | 20.0% |
!! | ATGAAAATTGCAATTGTAAA+TGG | + | chr5_3:17012617-17012636 | None:intergenic | 20.0% |
!!! | TAATTTTTTTTCTGGTACAA+AGG | - | chr5_3:17012781-17012800 | Msa0802560:intron | 20.0% |
!!! | ATACATTTGAAGTATTATTG+AGG | - | chr5_3:17013874-17013893 | Msa0802560:intron | 20.0% |
!!! | TTTTAGAGGATGTATCTTTA+TGG | + | chr5_3:17007691-17007710 | None:intergenic | 25.0% |
! | ATATTGTTAGACATCATAGA+AGG | + | chr5_3:17007885-17007904 | None:intergenic | 25.0% |
!!! | ATCCTTTTTTTTCTTCTTTC+CGG | + | chr5_3:17007976-17007995 | None:intergenic | 25.0% |
! | CCATAACTCTTTATAAAAGA+TGG | + | chr5_3:17008037-17008056 | None:intergenic | 25.0% |
!! | CCATCTTTTATAAAGAGTTA+TGG | - | chr5_3:17008034-17008053 | Msa0802560:intron | 25.0% |
! | CGAAAAAATTGTGAAGAAAT+TGG | - | chr5_3:17008383-17008402 | Msa0802560:intron | 25.0% |
! | ACAGATAAAAATTTCCACAA+TGG | - | chr5_3:17008660-17008679 | Msa0802560:intron | 25.0% |
!! | ATATTTCTGCATTGATACAT+CGG | + | chr5_3:17008701-17008720 | None:intergenic | 25.0% |
! | TGTATCAATGCAGAAATATT+TGG | - | chr5_3:17008702-17008721 | Msa0802560:intron | 25.0% |
! | ACTGAATCAAATATATGTCA+CGG | + | chr5_3:17008732-17008751 | None:intergenic | 25.0% |
! | TTACTTTGCATTTATGGTAA+TGG | + | chr5_3:17009021-17009040 | None:intergenic | 25.0% |
! | AAATATACTAGTGTTTCCTA+TGG | - | chr5_3:17009041-17009060 | Msa0802560:intron | 25.0% |
!! | TGTATCAATTGTTGTTCTAA+AGG | - | chr5_3:17009191-17009210 | Msa0802560:intron | 25.0% |
! | CCTAAAAAAAACTTGATGAA+AGG | + | chr5_3:17009403-17009422 | None:intergenic | 25.0% |
!!! | CCTTTCATCAAGTTTTTTTT+AGG | - | chr5_3:17009400-17009419 | Msa0802560:intron | 25.0% |
!! | AGATTTAGAACATTTCATTC+AGG | + | chr5_3:17009638-17009657 | None:intergenic | 25.0% |
! | AATAACTTTCATTTACAGGT+CGG | - | chr5_3:17009922-17009941 | Msa0802560:intron | 25.0% |
!! | GTAATGTGTTTTCATAATGA+TGG | - | chr5_3:17010119-17010138 | Msa0802560:intron | 25.0% |
! | TAAAATGCCAAACTTGAATT+TGG | + | chr5_3:17010339-17010358 | None:intergenic | 25.0% |
!! | TTTTATCAATAGCCCATAAT+AGG | + | chr5_3:17010850-17010869 | None:intergenic | 25.0% |
! | GCTATTGATAAAAATAAGAG+AGG | - | chr5_3:17010857-17010876 | Msa0802560:intron | 25.0% |
! | ATGATAAAACTGTAAATGGA+CGG | - | chr5_3:17010933-17010952 | Msa0802560:intron | 25.0% |
!! | AAGAGAAATTTTATGGTTTC+AGG | - | chr5_3:17011072-17011091 | Msa0802560:CDS | 25.0% |
!! | CTTCTTATCTTCTACATTTT+TGG | + | chr5_3:17011287-17011306 | None:intergenic | 25.0% |
!! | TACAATAAAAGAGTACATCA+AGG | + | chr5_3:17011534-17011553 | None:intergenic | 25.0% |
! | AAATAGATCGATATGAATCA+AGG | + | chr5_3:17012115-17012134 | None:intergenic | 25.0% |
! | AATCAAAAATGAATACGAGA+AGG | + | chr5_3:17012194-17012213 | None:intergenic | 25.0% |
! | ATTGTATTTCACACTCAAAT+TGG | - | chr5_3:17012635-17012654 | Msa0802560:intron | 25.0% |
!!! | ACGTAGGTTAATTTTTTTTC+TGG | - | chr5_3:17012773-17012792 | Msa0802560:intron | 25.0% |
! | TTGAAGATCATTAAGAACTT+TGG | - | chr5_3:17012828-17012847 | Msa0802560:CDS | 25.0% |
! | TTGAAGACAAATTTGTGTTT+AGG | - | chr5_3:17012931-17012950 | Msa0802560:intron | 25.0% |
! | ATTCATTACCTCTTTCTATT+TGG | - | chr5_3:17013051-17013070 | Msa0802560:intron | 25.0% |
! | ATTCATTACCTCTTTCTATT+TGG | - | chr5_3:17013051-17013070 | Msa0802560:intron | 25.0% |
!! | TACAATAAAAGAGTACATCA+AGG | + | chr5_3:17011534-17011553 | None:intergenic | 25.0% |
!!! | ATTGTTTCTGTTAGTAAACA+TGG | + | chr5_3:17014334-17014353 | None:intergenic | 25.0% |
AGAAAATGGTGTTTCTTATG+TGG | + | chr5_3:17007431-17007450 | None:intergenic | 30.0% | |
! | CCTTTTATTCTAATGTGTTG+CGG | + | chr5_3:17007462-17007481 | None:intergenic | 30.0% |
TGATTCTTTCGGTAGTTATA+TGG | + | chr5_3:17007491-17007510 | None:intergenic | 30.0% | |
CTCTAAGTTCATCAATCTAA+GGG | - | chr5_3:17007739-17007758 | Msa0802560:intron | 30.0% | |
! | CTTCATAAGCATTTTTCCAT+GGG | + | chr5_3:17007851-17007870 | None:intergenic | 30.0% |
! | ACTTCATAAGCATTTTTCCA+TGG | + | chr5_3:17007852-17007871 | None:intergenic | 30.0% |
CTCTTTATAAAAGATGGGTA+CGG | + | chr5_3:17008031-17008050 | None:intergenic | 30.0% | |
ATTATTACGTGTTAGTACGT+TGG | - | chr5_3:17008066-17008085 | Msa0802560:intron | 30.0% | |
TTATTACGTGTTAGTACGTT+GGG | - | chr5_3:17008067-17008086 | Msa0802560:intron | 30.0% | |
! | ATAGTATCACTAGTGTGTTT+TGG | + | chr5_3:17008101-17008120 | None:intergenic | 30.0% |
!! | TATATGTTAATTTGCAGGTG+TGG | - | chr5_3:17008203-17008222 | Msa0802560:intron | 30.0% |
!! | ATGCAAAAGCATTCATGAAT+AGG | - | chr5_3:17008289-17008308 | Msa0802560:intron | 30.0% |
!! | TGCAAAAGCATTCATGAATA+GGG | - | chr5_3:17008290-17008309 | Msa0802560:intron | 30.0% |
AATTGTGAAGAAATTGGTGA+AGG | - | chr5_3:17008389-17008408 | Msa0802560:intron | 30.0% | |
! | TACCAATATAGCAAAGTGTT+TGG | - | chr5_3:17008491-17008510 | Msa0802560:intron | 30.0% |
! | TACCAAACACTTTGCTATAT+TGG | + | chr5_3:17008496-17008515 | None:intergenic | 30.0% |
TTATCTATGAAGACCAATGA+TGG | - | chr5_3:17008552-17008571 | Msa0802560:intron | 30.0% | |
! | GTTATCTTTTTCCTAGAACT+CGG | - | chr5_3:17008625-17008644 | Msa0802560:intron | 30.0% |
! | TATTTCTGCATTGATACATC+GGG | + | chr5_3:17008700-17008719 | None:intergenic | 30.0% |
ATGCTGATATGTTGTCAATT+AGG | - | chr5_3:17008790-17008809 | Msa0802560:intron | 30.0% | |
ATCTGATTCAGTTTCAGATT+CGG | + | chr5_3:17008869-17008888 | None:intergenic | 30.0% | |
GCAATAGATATGGATTCATA+CGG | - | chr5_3:17008941-17008960 | Msa0802560:intron | 30.0% | |
! | TTTAAGGTTAATGCAGAATC+AGG | - | chr5_3:17009094-17009113 | Msa0802560:intron | 30.0% |
! | AAGTTTTGCACTTTTATGTC+TGG | + | chr5_3:17009153-17009172 | None:intergenic | 30.0% |
TAGAACATTTCATTCAGGTA+TGG | + | chr5_3:17009633-17009652 | None:intergenic | 30.0% | |
TCTTACTCTCTTTCTTCTTT+AGG | - | chr5_3:17009655-17009674 | Msa0802560:intron | 30.0% | |
TATATATATATGACGGCAGA+AGG | + | chr5_3:17009820-17009839 | None:intergenic | 30.0% | |
! | ACATATTCACATGTCATTTC+AGG | - | chr5_3:17009953-17009972 | Msa0802560:intron | 30.0% |
!!! | TTTTTTCCTTATGTATCAGC+TGG | - | chr5_3:17010038-17010057 | Msa0802560:intron | 30.0% |
! | TGTTTTCATAATGATGGCTA+TGG | - | chr5_3:17010125-17010144 | Msa0802560:intron | 30.0% |
TTGGCTTATAACAAACACAT+TGG | + | chr5_3:17010227-17010246 | None:intergenic | 30.0% | |
!! | ATGTGTTTGTTATAAGCCAA+TGG | - | chr5_3:17010227-17010246 | Msa0802560:intron | 30.0% |
!! | TGTGTTTGTTATAAGCCAAT+GGG | - | chr5_3:17010228-17010247 | Msa0802560:intron | 30.0% |
ATATGGTAGCACTTTACTTT+GGG | + | chr5_3:17010495-17010514 | None:intergenic | 30.0% | |
TATATGGTAGCACTTTACTT+TGG | + | chr5_3:17010496-17010515 | None:intergenic | 30.0% | |
AAACACATACTACTTTGTTC+CGG | + | chr5_3:17010558-17010577 | None:intergenic | 30.0% | |
! | ATTGCTGTTCATCATAGAAT+TGG | + | chr5_3:17010641-17010660 | None:intergenic | 30.0% |
TCAATATTTCAAGCACTAGA+CGG | + | chr5_3:17010694-17010713 | None:intergenic | 30.0% | |
!! | CAGTTTTATCATGTATGAGT+TGG | + | chr5_3:17010925-17010944 | None:intergenic | 30.0% |
! | AGGTTCTGATGAATAAACTA+TGG | + | chr5_3:17011140-17011159 | None:intergenic | 30.0% |
ATTCTTAATAGTTTCCACCA+GGG | + | chr5_3:17011444-17011463 | None:intergenic | 30.0% | |
TATTCTTAATAGTTTCCACC+AGG | + | chr5_3:17011445-17011464 | None:intergenic | 30.0% | |
GTTAGTTAGAGCTAGTAATA+AGG | - | chr5_3:17011471-17011490 | Msa0802560:intron | 30.0% | |
GAGTATTAGTTACTAGTTAG+TGG | - | chr5_3:17011493-17011512 | Msa0802560:intron | 30.0% | |
TGATACCATGTTAGTAAACA+TGG | + | chr5_3:17011635-17011654 | None:intergenic | 30.0% | |
AAATTGCAATTGTAAATGGG+AGG | + | chr5_3:17012613-17012632 | None:intergenic | 30.0% | |
!! | TTTTCCACTTTGAGTTTGAA+GGG | - | chr5_3:17012663-17012682 | Msa0802560:intron | 30.0% |
!!! | TTTTTTTCTGGTACAAAGGA+TGG | - | chr5_3:17012785-17012804 | Msa0802560:intron | 30.0% |
! | CTGTCAATTTGAAACATCAA+TGG | - | chr5_3:17012877-17012896 | Msa0802560:CDS | 30.0% |
CAAATTTGTCTTCAATCTTG+TGG | + | chr5_3:17012926-17012945 | None:intergenic | 30.0% | |
!!! | CTACTCTATTCTGTTTTGAT+GGG | - | chr5_3:17013171-17013190 | Msa0802560:CDS | 30.0% |
TACTGCTTGAGATCAAATAT+TGG | - | chr5_3:17013683-17013702 | Msa0802560:CDS | 30.0% | |
! | GATCAAATATTGGTTGGATT+TGG | - | chr5_3:17013693-17013712 | Msa0802560:CDS | 30.0% |
! | AATATTGGTTGGATTTGGTT+TGG | - | chr5_3:17013698-17013717 | Msa0802560:CDS | 30.0% |
TGCTTACATATCTACTTTGT+TGG | - | chr5_3:17013734-17013753 | Msa0802560:CDS | 30.0% | |
!! | ATTTTGCAAGATGTTTCTGT+TGG | - | chr5_3:17013943-17013962 | Msa0802560:intron | 30.0% |
! | CACATCAACTACTATCTTTT+TGG | - | chr5_3:17014032-17014051 | Msa0802560:intron | 30.0% |
!!! | GCATTTTAATTTCCTCTGTT+TGG | - | chr5_3:17014070-17014089 | Msa0802560:intron | 30.0% |
GTTAGTTAGAGCTAGTAATA+AGG | - | chr5_3:17011471-17011490 | Msa0802560:intron | 30.0% | |
GAGTATTAGTTACTAGTTAG+TGG | - | chr5_3:17011493-17011512 | Msa0802560:intron | 30.0% | |
TTAGAATTCCAATGAATAGC+AGG | + | chr5_3:17014452-17014471 | None:intergenic | 30.0% | |
GCTATTCATTGGAATTCTAA+CGG | - | chr5_3:17014452-17014471 | Msa0802560:intron | 30.0% | |
! | AGAGAAGAAAAGCATAATCA+GGG | + | chr5_3:17014532-17014551 | None:intergenic | 30.0% |
GCCAGAAAATGAGATTATGA+CGG | - | chr5_3:17007344-17007363 | Msa0802560:CDS | 35.0% | |
CCAGAAAATGAGATTATGAC+GGG | - | chr5_3:17007345-17007364 | Msa0802560:CDS | 35.0% | |
!! | AAAATGAGATTATGACGGGT+AGG | - | chr5_3:17007349-17007368 | Msa0802560:CDS | 35.0% |
! | TAGGCATCCTATCTTTGAAA+GGG | - | chr5_3:17007368-17007387 | Msa0802560:CDS | 35.0% |
TTGCGGAATTCTCAAGAAAA+TGG | + | chr5_3:17007445-17007464 | None:intergenic | 35.0% | |
CCGCAACACATTAGAATAAA+AGG | - | chr5_3:17007459-17007478 | Msa0802560:CDS | 35.0% | |
AGATCTTTAGCGTTAGCTAA+AGG | + | chr5_3:17007568-17007587 | None:intergenic | 35.0% | |
TTATGATGTAGGATCTTGGT+TGG | + | chr5_3:17007617-17007636 | None:intergenic | 35.0% | |
TCAGTTATGATGTAGGATCT+TGG | + | chr5_3:17007621-17007640 | None:intergenic | 35.0% | |
CTAAAGAGGCAAAGTTGTTA+AGG | + | chr5_3:17007652-17007671 | None:intergenic | 35.0% | |
TGATATTCTCCTAGCTAAAG+AGG | + | chr5_3:17007666-17007685 | None:intergenic | 35.0% | |
TTGATGAACTTAGAGGTCTT+GGG | + | chr5_3:17007734-17007753 | None:intergenic | 35.0% | |
ATTGATGAACTTAGAGGTCT+TGG | + | chr5_3:17007735-17007754 | None:intergenic | 35.0% | |
CCTTAGATTGATGAACTTAG+AGG | + | chr5_3:17007741-17007760 | None:intergenic | 35.0% | |
CCTCTAAGTTCATCAATCTA+AGG | - | chr5_3:17007738-17007757 | Msa0802560:intron | 35.0% | |
AGTCTAGTGTTTGTAAGACT+CGG | + | chr5_3:17007788-17007807 | None:intergenic | 35.0% | |
AATCTCAGTAGGTGTCTTAA+AGG | + | chr5_3:17007908-17007927 | None:intergenic | 35.0% | |
!! | TCTTTTCTGAGAATCTCAGT+AGG | + | chr5_3:17007919-17007938 | None:intergenic | 35.0% |
GAGTTAAAAACTCTACTCAC+CGG | - | chr5_3:17007954-17007973 | Msa0802560:intron | 35.0% | |
CACCGGAAAGAAGAAAAAAA+AGG | - | chr5_3:17007971-17007990 | Msa0802560:intron | 35.0% | |
TATGGAGTGATCTATAGTGA+AGG | + | chr5_3:17008242-17008261 | None:intergenic | 35.0% | |
TTCACTATAGATCACTCCAT+AGG | - | chr5_3:17008241-17008260 | Msa0802560:intron | 35.0% | |
! | TATGTTTTCCACGTCTTCTT+CGG | - | chr5_3:17008323-17008342 | Msa0802560:intron | 35.0% |
TGAAGAAATTGGTGAAGGAA+GGG | - | chr5_3:17008394-17008413 | Msa0802560:intron | 35.0% | |
GTGAAAATGAAAGACAATCG+TGG | - | chr5_3:17008429-17008448 | Msa0802560:intron | 35.0% | |
! | AAAGTGTTTGGTAGAGAAGA+AGG | - | chr5_3:17008503-17008522 | Msa0802560:intron | 35.0% |
AAGTGTTTGGTAGAGAAGAA+GGG | - | chr5_3:17008504-17008523 | Msa0802560:intron | 35.0% | |
AACAGGAATTTCACCATCAT+TGG | + | chr5_3:17008568-17008587 | None:intergenic | 35.0% | |
TTAGAAGCAAAACACCATTG+TGG | + | chr5_3:17008677-17008696 | None:intergenic | 35.0% | |
GATATGTTGTCAATTAGGTG+TGG | - | chr5_3:17008795-17008814 | Msa0802560:intron | 35.0% | |
AGTTTCAGATTCGGATTTGT+GGG | + | chr5_3:17008860-17008879 | None:intergenic | 35.0% | |
! | GAATCTGAAACTGAATCAGA+TGG | - | chr5_3:17008868-17008887 | Msa0802560:intron | 35.0% |
! | ATCCATATCTATTGCCACTT+GGG | + | chr5_3:17008936-17008955 | None:intergenic | 35.0% |
AATCCATATCTATTGCCACT+TGG | + | chr5_3:17008937-17008956 | None:intergenic | 35.0% | |
AATATACCCAATCTGTCCAT+AGG | + | chr5_3:17009060-17009079 | None:intergenic | 35.0% | |
CAACTCAAAACATCTTTCAC+AGG | - | chr5_3:17009219-17009238 | Msa0802560:intron | 35.0% | |
CAAAACATCTTTCACAGGTA+CGG | - | chr5_3:17009224-17009243 | Msa0802560:intron | 35.0% | |
AAGACAAGACATTGTCTTTG+TGG | - | chr5_3:17009426-17009445 | Msa0802560:intron | 35.0% | |
GAAGACAAATGTTTCTTGCA+GGG | + | chr5_3:17009452-17009471 | None:intergenic | 35.0% | |
AGAAGACAAATGTTTCTTGC+AGG | + | chr5_3:17009453-17009472 | None:intergenic | 35.0% | |
CTTTGCATGTTATGCTAATC+TGG | - | chr5_3:17009529-17009548 | Msa0802560:intron | 35.0% | |
CATGTTATGCTAATCTGGAA+CGG | - | chr5_3:17009534-17009553 | Msa0802560:intron | 35.0% | |
! | ACTCTCTTTCTTCTTTAGGA+AGG | - | chr5_3:17009659-17009678 | Msa0802560:intron | 35.0% |
! | TCTTCTTTAGGAAGGATCTT+TGG | - | chr5_3:17009667-17009686 | Msa0802560:intron | 35.0% |
AATTTCGCAAGTACATCTCT+TGG | - | chr5_3:17009711-17009730 | Msa0802560:intron | 35.0% | |
ATTTCGCAAGTACATCTCTT+GGG | - | chr5_3:17009712-17009731 | Msa0802560:intron | 35.0% | |
! | TAGGTAGTTTTCGATTCTCA+TGG | - | chr5_3:17009735-17009754 | Msa0802560:intron | 35.0% |
TGTTTCCACTCTCATATTTG+TGG | + | chr5_3:17009772-17009791 | None:intergenic | 35.0% | |
AGAGTGGAAACATACTATGT+TGG | - | chr5_3:17009780-17009799 | Msa0802560:intron | 35.0% | |
! | GAAACATACTATGTTGGTCT+TGG | - | chr5_3:17009786-17009805 | Msa0802560:intron | 35.0% |
TAACTTCCAGCTGATACATA+AGG | + | chr5_3:17010047-17010066 | None:intergenic | 35.0% | |
!! | GTGTTTGTTATAAGCCAATG+GGG | - | chr5_3:17010229-17010248 | Msa0802560:intron | 35.0% |
!! | CAAATTGGATTTGCTGAAGT+CGG | + | chr5_3:17010459-17010478 | None:intergenic | 35.0% |
TCATCATAGAATTGGAGAGA+CGG | + | chr5_3:17010633-17010652 | None:intergenic | 35.0% | |
TTGAGTTCATAGATGCAATG+AGG | - | chr5_3:17010810-17010829 | Msa0802560:intron | 35.0% | |
! | GTTGGAAGACTTCTTTTCTA+CGG | + | chr5_3:17010907-17010926 | None:intergenic | 35.0% |
TAAAACTGTAAATGGACGGA+AGG | - | chr5_3:17010937-17010956 | Msa0802560:intron | 35.0% | |
!!! | TTTTTGGCTTCCTTACACTT+GGG | + | chr5_3:17011271-17011290 | None:intergenic | 35.0% |
!!! | ATTTTTGGCTTCCTTACACT+TGG | + | chr5_3:17011272-17011291 | None:intergenic | 35.0% |
TAGTGAAAGTAGGGGAAAAA+TGG | - | chr5_3:17011341-17011360 | Msa0802560:CDS | 35.0% | |
AGTGAAAGTAGGGGAAAAAT+GGG | - | chr5_3:17011342-17011361 | Msa0802560:CDS | 35.0% | |
! | GTTAGTGGATGCCTATAAAT+AGG | - | chr5_3:17011508-17011527 | Msa0802560:intron | 35.0% |
GTACATCAAGGCCTATTTAT+AGG | + | chr5_3:17011522-17011541 | None:intergenic | 35.0% | |
! | ATTTTCTCGAGAAAATGCAG+CGG | + | chr5_3:17011695-17011714 | None:intergenic | 35.0% |
GTAACAGAGTCAAGAAAGAA+AGG | + | chr5_3:17011774-17011793 | None:intergenic | 35.0% | |
!! | AAGTACTGGACAAAGATCAT+AGG | + | chr5_3:17011826-17011845 | None:intergenic | 35.0% |
ATGACAAACTCAATCACGAA+AGG | + | chr5_3:17011966-17011985 | None:intergenic | 35.0% | |
!!! | TGTCATTTTCCCCAAATCTT+AGG | - | chr5_3:17012046-17012065 | Msa0802560:intron | 35.0% |
!! | GTCATTTTCCCCAAATCTTA+GGG | - | chr5_3:17012047-17012066 | Msa0802560:intron | 35.0% |
GGATTAAACGCAAAAACAAG+AGG | + | chr5_3:17012094-17012113 | None:intergenic | 35.0% | |
!! | TAGTTCAGAAGCTGTTTTGT+TGG | - | chr5_3:17012455-17012474 | Msa0802560:intron | 35.0% |
!! | CTTTTCCACTTTGAGTTTGA+AGG | - | chr5_3:17012662-17012681 | Msa0802560:intron | 35.0% |
! | TTTCCACTTTGAGTTTGAAG+GGG | - | chr5_3:17012664-17012683 | Msa0802560:intron | 35.0% |
AATGGCAAGCAATAAAGTCT+TGG | - | chr5_3:17012895-17012914 | Msa0802560:intron | 35.0% | |
TCTTTGTTACCAATTAGAGC+TGG | - | chr5_3:17012956-17012975 | Msa0802560:intron | 35.0% | |
GTAATGAATCATAACGATCC+AGG | + | chr5_3:17013078-17013097 | None:intergenic | 35.0% | |
TCTCATAGTACCATAAGCAA+AGG | + | chr5_3:17013147-17013166 | None:intergenic | 35.0% | |
CCATCAAAACAGAATAGAGT+AGG | + | chr5_3:17013173-17013192 | None:intergenic | 35.0% | |
!! | CCTACTCTATTCTGTTTTGA+TGG | - | chr5_3:17013170-17013189 | Msa0802560:CDS | 35.0% |
!!! | GTTTTGTTATTAGCCTATGC+TGG | - | chr5_3:17013213-17013232 | Msa0802560:CDS | 35.0% |
TGATAAGCTTCTGTCATGAA+TGG | - | chr5_3:17013281-17013300 | Msa0802560:intron | 35.0% | |
CTTCTTGTAGCTTCTGTTAA+TGG | - | chr5_3:17013350-17013369 | Msa0802560:CDS | 35.0% | |
TATCAACGCTTAACCATCAA+TGG | + | chr5_3:17013397-17013416 | None:intergenic | 35.0% | |
CTTTGAGTATAGTTTCTGCT+TGG | - | chr5_3:17013492-17013511 | Msa0802560:CDS | 35.0% | |
! | GTAGTTAAGCTTTTGCCTTA+TGG | - | chr5_3:17013514-17013533 | Msa0802560:CDS | 35.0% |
AGTAACTAACCAAAGCCATA+AGG | + | chr5_3:17013667-17013686 | None:intergenic | 35.0% | |
GCTTGAGATCAAATATTGGT+TGG | - | chr5_3:17013687-17013706 | Msa0802560:CDS | 35.0% | |
ATGAATAACCAATCCAGAAC+CGG | + | chr5_3:17013828-17013847 | None:intergenic | 35.0% | |
! | GATTGGTTATTCATACTTGC+TGG | - | chr5_3:17013834-17013853 | Msa0802560:intron | 35.0% |
TGATTGGAAGTCTTCTCTTA+TGG | - | chr5_3:17013981-17014000 | Msa0802560:intron | 35.0% | |
ACAAAGTTAACACCAAACAG+AGG | + | chr5_3:17014085-17014104 | None:intergenic | 35.0% | |
TTCTCTTACCTTGAGTTTGA+GGG | - | chr5_3:17014126-17014145 | Msa0802560:intron | 35.0% | |
! | GTTAGTGGATGCCTATAAAT+AGG | - | chr5_3:17011508-17011527 | Msa0802560:intron | 35.0% |
GTACATCAAGGCCTATTTAT+AGG | + | chr5_3:17011522-17011541 | None:intergenic | 35.0% | |
AACAGAAACAATCAAGACAG+TGG | - | chr5_3:17014342-17014361 | Msa0802560:intron | 35.0% | |
! | TGTTTTGTCCTTCAAGAAGA+GGG | + | chr5_3:17014373-17014392 | None:intergenic | 35.0% |
! | ATGTTTTGTCCTTCAAGAAG+AGG | + | chr5_3:17014374-17014393 | None:intergenic | 35.0% |
AGGGCAAAAAGTAACTTAAG+CGG | + | chr5_3:17014513-17014532 | None:intergenic | 35.0% | |
! | CAGAGAAGAAAAGCATAATC+AGG | + | chr5_3:17014533-17014552 | None:intergenic | 35.0% |
! | GATTATGCTTTTCTTCTCTG+TGG | - | chr5_3:17014533-17014552 | Msa0802560:intron | 35.0% |
!! | TTCACTTGCTATGCTCTTAA+AGG | - | chr5_3:17014581-17014600 | Msa0802560:intron | 35.0% |
!! | TCACTTGCTATGCTCTTAAA+GGG | - | chr5_3:17014582-17014601 | Msa0802560:intron | 35.0% |
! | TATGTCATTTGCCAGTATTC+CGG | - | chr5_3:17014629-17014648 | Msa0802560:intron | 35.0% |
! | CCCGTCATAATCTCATTTTC+TGG | + | chr5_3:17007348-17007367 | None:intergenic | 40.0% |
GTAGGCATCCTATCTTTGAA+AGG | - | chr5_3:17007367-17007386 | Msa0802560:CDS | 40.0% | |
! | AGGCATCCTATCTTTGAAAG+GGG | - | chr5_3:17007369-17007388 | Msa0802560:CDS | 40.0% |
GTGTGGGACTATGATTCTTT+CGG | + | chr5_3:17007502-17007521 | None:intergenic | 40.0% | |
!! | TCTGGTTTGGTCTTCTTGTA+GGG | + | chr5_3:17007537-17007556 | None:intergenic | 40.0% |
! | AAAGGAGTGTATCTCTGGTT+TGG | + | chr5_3:17007550-17007569 | None:intergenic | 40.0% |
! | TAGCTAAAGGAGTGTATCTC+TGG | + | chr5_3:17007555-17007574 | None:intergenic | 40.0% |
AAGAGGCAAAGTTGTTAAGG+TGG | + | chr5_3:17007649-17007668 | None:intergenic | 40.0% | |
ACAACTTTGCCTCTTTAGCT+AGG | - | chr5_3:17007654-17007673 | Msa0802560:intron | 40.0% | |
TGTTTGTAAGACTCGGAAGA+TGG | + | chr5_3:17007781-17007800 | None:intergenic | 40.0% | |
TTGAACCCAAGTGATCTTCT+AGG | - | chr5_3:17007809-17007828 | Msa0802560:intron | 40.0% | |
ATGTGCCTAGAAGATCACTT+GGG | + | chr5_3:17007817-17007836 | None:intergenic | 40.0% | |
AATGTGCCTAGAAGATCACT+TGG | + | chr5_3:17007818-17007837 | None:intergenic | 40.0% | |
AGTGATCTTCTAGGCACATT+TGG | - | chr5_3:17007818-17007837 | Msa0802560:intron | 40.0% | |
! | AAGCATTTTTCCATGGGTGA+GGG | + | chr5_3:17007845-17007864 | None:intergenic | 40.0% |
! | TAAGCATTTTTCCATGGGTG+AGG | + | chr5_3:17007846-17007865 | None:intergenic | 40.0% |
TATAAAAGATGGGTACGGTG+TGG | + | chr5_3:17008026-17008045 | None:intergenic | 40.0% | |
CTCCATAGGTTTATTGAGAG+CGG | - | chr5_3:17008255-17008274 | Msa0802560:intron | 40.0% | |
TACCGCTCTCAATAAACCTA+TGG | + | chr5_3:17008260-17008279 | None:intergenic | 40.0% | |
GGTTTATTGAGAGCGGTAAT+TGG | - | chr5_3:17008262-17008281 | Msa0802560:intron | 40.0% | |
! | ATGTTTTCCACGTCTTCTTC+GGG | - | chr5_3:17008324-17008343 | Msa0802560:intron | 40.0% |
GTGAAGAAATTGGTGAAGGA+AGG | - | chr5_3:17008393-17008412 | Msa0802560:intron | 40.0% | |
CATTTCTTTGTGTCCCTTAG+CGG | + | chr5_3:17008601-17008620 | None:intergenic | 40.0% | |
! | TCTTTTTCCTAGAACTCGGT+TGG | - | chr5_3:17008629-17008648 | Msa0802560:intron | 40.0% |
ATTTCTTCCAACCGAGTTCT+AGG | + | chr5_3:17008639-17008658 | None:intergenic | 40.0% | |
CAGTTTCAGATTCGGATTTG+TGG | + | chr5_3:17008861-17008880 | None:intergenic | 40.0% | |
ATGCGTGCCAATGCATATAA+GGG | + | chr5_3:17008901-17008920 | None:intergenic | 40.0% | |
TTCCCAAGTGGCAATAGATA+TGG | - | chr5_3:17008931-17008950 | Msa0802560:intron | 40.0% | |
AGTGTTTCCTATGGACAGAT+TGG | - | chr5_3:17009050-17009069 | Msa0802560:intron | 40.0% | |
GTGTTTCCTATGGACAGATT+GGG | - | chr5_3:17009051-17009070 | Msa0802560:intron | 40.0% | |
! | CTTTAGGAAGGATCTTTGGA+TGG | - | chr5_3:17009671-17009690 | Msa0802560:intron | 40.0% |
CACTCTCATATTTGTGGATG+TGG | + | chr5_3:17009766-17009785 | None:intergenic | 40.0% | |
CACATCCACAAATATGAGAG+TGG | - | chr5_3:17009764-17009783 | Msa0802560:intron | 40.0% | |
GTAAAGACGCGTGATATGAT+AGG | + | chr5_3:17010158-17010177 | None:intergenic | 40.0% | |
AGTGGCCATCTAATCATGAT+CGG | - | chr5_3:17010308-17010327 | Msa0802560:intron | 40.0% | |
AGTGTCCAATCAAGATCAGA+TGG | - | chr5_3:17010393-17010412 | Msa0802560:intron | 40.0% | |
GGTAACCATCTGATCTTGAT+TGG | + | chr5_3:17010401-17010420 | None:intergenic | 40.0% | |
CGACTTCAGCAAATCCAATT+TGG | - | chr5_3:17010457-17010476 | Msa0802560:intron | 40.0% | |
GGTAATGACAAGCACCAAAT+TGG | + | chr5_3:17010474-17010493 | None:intergenic | 40.0% | |
GACTCATAAGTTGCACTAAC+CGG | - | chr5_3:17010536-17010555 | Msa0802560:intron | 40.0% | |
TAAGGAATCTGAACTGAGAG+AGG | - | chr5_3:17010742-17010761 | Msa0802560:intron | 40.0% | |
AAGCTAACCCTGACCTATTA+TGG | - | chr5_3:17010834-17010853 | Msa0802560:intron | 40.0% | |
AGCTAACCCTGACCTATTAT+GGG | - | chr5_3:17010835-17010854 | Msa0802560:intron | 40.0% | |
CAATAGCCCATAATAGGTCA+GGG | + | chr5_3:17010844-17010863 | None:intergenic | 40.0% | |
TCAATAGCCCATAATAGGTC+AGG | + | chr5_3:17010845-17010864 | None:intergenic | 40.0% | |
TGATAATACCCTCTTGCATC+TGG | - | chr5_3:17010988-17011007 | Msa0802560:intron | 40.0% | |
TTGCATCTGGCTGGAAATTT+AGG | - | chr5_3:17011001-17011020 | Msa0802560:CDS | 40.0% | |
TGCATCTGGCTGGAAATTTA+GGG | - | chr5_3:17011002-17011021 | Msa0802560:CDS | 40.0% | |
! | TAGCATAATGGGATGAATGC+AGG | - | chr5_3:17011225-17011244 | Msa0802560:CDS | 40.0% |
AATTGTTCACCCCAAGTGTA+AGG | - | chr5_3:17011258-17011277 | Msa0802560:CDS | 40.0% | |
!!! | TTTTGGCTTCCTTACACTTG+GGG | + | chr5_3:17011270-17011289 | None:intergenic | 40.0% |
CTTTCGGTAAATATCTCACG+AGG | + | chr5_3:17011310-17011329 | None:intergenic | 40.0% | |
GATATTTACCGAAAGCCACA+AGG | - | chr5_3:17011315-17011334 | Msa0802560:CDS | 40.0% | |
ACAAGGAGCTAGTGAAAGTA+GGG | - | chr5_3:17011332-17011351 | Msa0802560:CDS | 40.0% | |
AAATGGGCAAAAGATACAGC+TGG | - | chr5_3:17011358-17011377 | Msa0802560:CDS | 40.0% | |
! | CTTTTCTCTCCTTTCATCCA+TGG | - | chr5_3:17011606-17011625 | Msa0802560:intron | 40.0% |
GTTAGTAAACATGGCATCCA+TGG | + | chr5_3:17011626-17011645 | None:intergenic | 40.0% | |
GGATGCCATGTTTACTAACA+TGG | - | chr5_3:17011627-17011646 | Msa0802560:intron | 40.0% | |
! | TGGTATCAGAGCATCAAATC+TGG | - | chr5_3:17011647-17011666 | Msa0802560:intron | 40.0% |
AAATCTGGTATCCACCTTGA+AGG | - | chr5_3:17011662-17011681 | Msa0802560:intron | 40.0% | |
!! | CACAAACTGATTCGAAGTAC+TGG | + | chr5_3:17011840-17011859 | None:intergenic | 40.0% |
TCACGAAAGGATTCAGAAAC+TGG | + | chr5_3:17011953-17011972 | None:intergenic | 40.0% | |
TCTCGAAACCCTAAGATTTG+GGG | + | chr5_3:17012058-17012077 | None:intergenic | 40.0% | |
CTCTCGAAACCCTAAGATTT+GGG | + | chr5_3:17012059-17012078 | None:intergenic | 40.0% | |
ACTCTCGAAACCCTAAGATT+TGG | + | chr5_3:17012060-17012079 | None:intergenic | 40.0% | |
CTTGTTCATCGCATCTGATT+CGG | - | chr5_3:17012247-17012266 | Msa0802560:intron | 40.0% | |
! | CATGAAGCTTCAATTGACTC+AGG | - | chr5_3:17012303-17012322 | Msa0802560:intron | 40.0% |
!! | CGTTTCAGAAGCTGTTTTGT+TGG | - | chr5_3:17012395-17012414 | Msa0802560:intron | 40.0% |
!! | TGGTTCAGAAGCTGTTTTGT+TGG | - | chr5_3:17012415-17012434 | Msa0802560:intron | 40.0% |
!! | TGGTTCAGAAGCTGTTTTGT+TGG | - | chr5_3:17012415-17012434 | Msa0802560:intron | 40.0% |
! | TTCCACTTTGAGTTTGAAGG+GGG | - | chr5_3:17012665-17012684 | Msa0802560:intron | 40.0% |
ACCTTTACTGAACCACAACT+TGG | + | chr5_3:17012721-17012740 | None:intergenic | 40.0% | |
!! | GTTTCTACAGAAGCGTGTTT+TGG | - | chr5_3:17012739-17012758 | Msa0802560:intron | 40.0% |
!!! | TACAGAAGCGTGTTTTGGTT+TGG | - | chr5_3:17012744-17012763 | Msa0802560:intron | 40.0% |
! | AGGATGGACTTTGTGAAGAT+TGG | - | chr5_3:17012801-17012820 | Msa0802560:intron | 40.0% |
! | CACTTGTAACCAGCTCTAAT+TGG | + | chr5_3:17012968-17012987 | None:intergenic | 40.0% |
!! | CAAGTTTAGCTCTCATGCTT+TGG | - | chr5_3:17013003-17013022 | Msa0802560:intron | 40.0% |
!! | TTTAGCTCTCATGCTTTGGT+TGG | - | chr5_3:17013007-17013026 | Msa0802560:intron | 40.0% |
GCTTTGGTTGGATTCTTTAC+TGG | - | chr5_3:17013019-17013038 | Msa0802560:intron | 40.0% | |
TACCTCTTTCTATTTGGTCC+TGG | - | chr5_3:17013057-17013076 | Msa0802560:intron | 40.0% | |
ATCCAGGACCAAATAGAAAG+AGG | + | chr5_3:17013062-17013081 | None:intergenic | 40.0% | |
TACCTCTTTCTATTTGGTCC+TGG | - | chr5_3:17013057-17013076 | Msa0802560:intron | 40.0% | |
ATCCAGGACCAAATAGAAAG+AGG | + | chr5_3:17013062-17013081 | None:intergenic | 40.0% | |
AAAAGCAGCTATAACGATCC+AGG | + | chr5_3:17013116-17013135 | None:intergenic | 40.0% | |
!! | TGGATCGTTATAGCTGCTTT+TGG | - | chr5_3:17013115-17013134 | Msa0802560:CDS | 40.0% |
!!! | ATTCTGTTTTGATGGGATGC+AGG | - | chr5_3:17013178-17013197 | Msa0802560:CDS | 40.0% |
!!! | TTCTGTTTTGATGGGATGCA+GGG | - | chr5_3:17013179-17013198 | Msa0802560:CDS | 40.0% |
ACAAGAATCAAAGCCAGCAT+AGG | + | chr5_3:17013229-17013248 | None:intergenic | 40.0% | |
GTTTGTGCTTCTGTTCATGA+TGG | - | chr5_3:17013247-17013266 | Msa0802560:intron | 40.0% | |
TGATTGCTTCTGCCTTTGAT+AGG | - | chr5_3:17013430-17013449 | Msa0802560:CDS | 40.0% | |
CAAGCTTAACCACCTATCAA+AGG | + | chr5_3:17013445-17013464 | None:intergenic | 40.0% | |
GCTATGATCATCAAGCCATA+AGG | + | chr5_3:17013532-17013551 | None:intergenic | 40.0% | |
CAACATGCTTAACCACCATA+GGG | + | chr5_3:17013560-17013579 | None:intergenic | 40.0% | |
TTAAGCATGTTGCCCTTTGT+TGG | - | chr5_3:17013568-17013587 | Msa0802560:CDS | 40.0% | |
CCATCAACAAAGCCAACAAA+GGG | + | chr5_3:17013583-17013602 | None:intergenic | 40.0% | |
ACCATCAACAAAGCCAACAA+AGG | + | chr5_3:17013584-17013603 | None:intergenic | 40.0% | |
TGATGGTAGCTTCTGTTAAG+TGG | - | chr5_3:17013597-17013616 | Msa0802560:CDS | 40.0% | |
AGTGGTTAAGCCTAGAGTTA+TGG | - | chr5_3:17013615-17013634 | Msa0802560:CDS | 40.0% | |
! | TGGTTAAGCGTTTTGCCTTA+TGG | - | chr5_3:17013649-17013668 | Msa0802560:CDS | 40.0% |
!! | TGGTTGGATTTGGTTTGGTT+TGG | - | chr5_3:17013703-17013722 | Msa0802560:CDS | 40.0% |
TGAATAACCAATCCAGAACC+GGG | + | chr5_3:17013827-17013846 | None:intergenic | 40.0% | |
!!! | GAGCTGTTTTGGTTAGTAGT+TGG | - | chr5_3:17013913-17013932 | Msa0802560:intron | 40.0% |
! | TTGCAAGATGTTTCTGTTGG+AGG | - | chr5_3:17013946-17013965 | Msa0802560:intron | 40.0% |
TTTCTGTTGGAGGAAACAAG+TGG | - | chr5_3:17013956-17013975 | Msa0802560:intron | 40.0% | |
GAGGAAACAAGTGGTTTGAT+TGG | - | chr5_3:17013965-17013984 | Msa0802560:intron | 40.0% | |
! | GAGAACTCTTAGCTTGAGTT+TGG | + | chr5_3:17014111-17014130 | None:intergenic | 40.0% |
GTTCTCTTACCTTGAGTTTG+AGG | - | chr5_3:17014125-17014144 | Msa0802560:intron | 40.0% | |
! | CTTTTCTCTCCTTTCATCCA+TGG | - | chr5_3:17011606-17011625 | Msa0802560:intron | 40.0% |
GTTAGTAAACATGGCATCCA+TGG | + | chr5_3:17011626-17011645 | None:intergenic | 40.0% | |
! | GTTTTGTCCTTCAAGAAGAG+GGG | + | chr5_3:17014372-17014391 | None:intergenic | 40.0% |
ACTTCAGTCCTGCTATTCAT+TGG | - | chr5_3:17014441-17014460 | Msa0802560:intron | 40.0% | |
ATGCTCTTAAAGGGACATCA+AGG | - | chr5_3:17014591-17014610 | Msa0802560:intron | 40.0% | |
AAGAACAATCACCGGAATAC+TGG | + | chr5_3:17014643-17014662 | None:intergenic | 40.0% | |
! | GAAGGTACAAGAACAATCAC+CGG | + | chr5_3:17014651-17014670 | None:intergenic | 40.0% |
CTTCGTCCCCTTTCAAAGAT+AGG | + | chr5_3:17007378-17007397 | None:intergenic | 45.0% | |
TCTTGTAGGGGTGGATCATT+GGG | + | chr5_3:17007524-17007543 | None:intergenic | 45.0% | |
TTCTTGTAGGGGTGGATCAT+TGG | + | chr5_3:17007525-17007544 | None:intergenic | 45.0% | |
!! | CTGGTTTGGTCTTCTTGTAG+GGG | + | chr5_3:17007536-17007555 | None:intergenic | 45.0% |
!! | CTCTGGTTTGGTCTTCTTGT+AGG | + | chr5_3:17007538-17007557 | None:intergenic | 45.0% |
AAGACGGGTCTCTTCGTTTA+GGG | + | chr5_3:17007594-17007613 | None:intergenic | 45.0% | |
TAGGATCTTGGTTGGAAGAC+GGG | + | chr5_3:17007609-17007628 | None:intergenic | 45.0% | |
GTAGGATCTTGGTTGGAAGA+CGG | + | chr5_3:17007610-17007629 | None:intergenic | 45.0% | |
GGTGGGATCAGTTATGATGT+AGG | + | chr5_3:17007628-17007647 | None:intergenic | 45.0% | |
GGCAAAGTTGTTAAGGTGGT+GGG | + | chr5_3:17007645-17007664 | None:intergenic | 45.0% | |
AGGCAAAGTTGTTAAGGTGG+TGG | + | chr5_3:17007646-17007665 | None:intergenic | 45.0% | |
ACTTAGAGGTCTTGGGTAAG+TGG | + | chr5_3:17007727-17007746 | None:intergenic | 45.0% | |
CTTCATGTTGCAGTGATTGC+TGG | - | chr5_3:17008357-17008376 | Msa0802560:intron | 45.0% | |
TGGTGAAGGAAGGGAAAGAT+AGG | - | chr5_3:17008403-17008422 | Msa0802560:intron | 45.0% | |
CAACTCAGCAACAAGAGCTA+GGG | + | chr5_3:17008463-17008482 | None:intergenic | 45.0% | |
TCAACTCAGCAACAAGAGCT+AGG | + | chr5_3:17008464-17008483 | None:intergenic | 45.0% | |
TGTTTGGTAGAGAAGAAGGG+AGG | - | chr5_3:17008507-17008526 | Msa0802560:intron | 45.0% | |
GTTTGGTAGAGAAGAAGGGA+GGG | - | chr5_3:17008508-17008527 | Msa0802560:intron | 45.0% | |
CGTGCAACCCTTATATGCAT+TGG | - | chr5_3:17008891-17008910 | Msa0802560:intron | 45.0% | |
CATGCGTGCCAATGCATATA+AGG | + | chr5_3:17008902-17008921 | None:intergenic | 45.0% | |
AAACCTTCTCATGCACAGTG+CGG | - | chr5_3:17010179-17010198 | Msa0802560:intron | 45.0% | |
TGTTATAAGCCAATGGGGTG+TGG | - | chr5_3:17010234-17010253 | Msa0802560:intron | 45.0% | |
TCTCTACTGTCACACGTTAG+TGG | - | chr5_3:17010290-17010309 | Msa0802560:intron | 45.0% | |
GCCATCTAATCATGATCGGA+CGG | - | chr5_3:17010312-17010331 | Msa0802560:intron | 45.0% | |
ACCGTCCGATCATGATTAGA+TGG | + | chr5_3:17010316-17010335 | None:intergenic | 45.0% | |
! | GGACGGTCCAAATTCAAGTT+TGG | - | chr5_3:17010329-17010348 | Msa0802560:intron | 45.0% |
ACAATCACTCAGTCTGACGA+AGG | + | chr5_3:17010422-17010441 | None:intergenic | 45.0% | |
ATGTTGCAAGCAGCTAAGCA+TGG | - | chr5_3:17010782-17010801 | Msa0802560:intron | 45.0% | |
ATTTCCAGCCAGATGCAAGA+GGG | + | chr5_3:17010999-17011018 | None:intergenic | 45.0% | |
AATTTCCAGCCAGATGCAAG+AGG | + | chr5_3:17011000-17011019 | None:intergenic | 45.0% | |
AGATCTTCGGTGAAGATCAG+AGG | + | chr5_3:17011032-17011051 | None:intergenic | 45.0% | |
TCTGATCTTCACCGAAGATC+TGG | - | chr5_3:17011031-17011050 | Msa0802560:CDS | 45.0% | |
TCTCTTTGCATTTGGAGAGC+AGG | + | chr5_3:17011058-17011077 | None:intergenic | 45.0% | |
CTACTTTCACTAGCTCCTTG+TGG | + | chr5_3:17011333-17011352 | None:intergenic | 45.0% | |
CACAAGGAGCTAGTGAAAGT+AGG | - | chr5_3:17011331-17011350 | Msa0802560:CDS | 45.0% | |
CAAGGAGCTAGTGAAAGTAG+GGG | - | chr5_3:17011333-17011352 | Msa0802560:CDS | 45.0% | |
ACATGGCATCCATGGATGAA+AGG | + | chr5_3:17011618-17011637 | None:intergenic | 45.0% | |
GCGGAAAATATCCTTCAAGG+TGG | + | chr5_3:17011676-17011695 | None:intergenic | 45.0% | |
GCAGCGGAAAATATCCTTCA+AGG | + | chr5_3:17011679-17011698 | None:intergenic | 45.0% | |
!! | CGCATCTGATTCGGTTCATA+TGG | - | chr5_3:17012256-17012275 | Msa0802560:intron | 45.0% |
ACTCTGTATGTGCCAAGTTG+TGG | - | chr5_3:17012706-17012725 | Msa0802560:intron | 45.0% | |
GCCAAGTTGTGGTTCAGTAA+AGG | - | chr5_3:17012717-17012736 | Msa0802560:intron | 45.0% | |
!! | TTTGGTTTGGTGCAACACGT+AGG | - | chr5_3:17012757-17012776 | Msa0802560:intron | 45.0% |
!! | AAGAACTTTGGTTCTGCGTG+TGG | - | chr5_3:17012840-17012859 | Msa0802560:CDS | 45.0% |
TTCTGCGTGTGGAGATATGT+TGG | - | chr5_3:17012851-17012870 | Msa0802560:CDS | 45.0% | |
AGTACCATAAGCAAAGGCTG+AGG | + | chr5_3:17013141-17013160 | None:intergenic | 45.0% | |
AAACGACGCTTAACCATCCT+CGG | + | chr5_3:17013326-17013345 | None:intergenic | 45.0% | |
CGTGACACTTCTTCCATTGA+TGG | - | chr5_3:17013381-17013400 | Msa0802560:CDS | 45.0% | |
TTGCTTCTGCCTTTGATAGG+TGG | - | chr5_3:17013433-17013452 | Msa0802560:CDS | 45.0% | |
GTTGTTGTGCTTCTGTCAAG+TGG | - | chr5_3:17013464-17013483 | Msa0802560:CDS | 45.0% | |
TGATCATAGCTTCTGCCCTA+TGG | - | chr5_3:17013542-17013561 | Msa0802560:CDS | 45.0% | |
GCAACATGCTTAACCACCAT+AGG | + | chr5_3:17013561-17013580 | None:intergenic | 45.0% | |
!! | CCCTTTGTTGGCTTTGTTGA+TGG | - | chr5_3:17013580-17013599 | Msa0802560:CDS | 45.0% |
TGAGCAGAAGCCATAACTCT+AGG | + | chr5_3:17013628-17013647 | None:intergenic | 45.0% | |
GAGTTATGGCTTCTGCTCAA+TGG | - | chr5_3:17013629-17013648 | Msa0802560:CDS | 45.0% | |
! | AGCGTTTTGCCTTATGGCTT+TGG | - | chr5_3:17013655-17013674 | Msa0802560:CDS | 45.0% |
!! | GTTGGTTCTGCTAGTGATGT+TGG | - | chr5_3:17013752-17013771 | Msa0802560:CDS | 45.0% |
! | GTTTTCCTTGCCTACACCTT+TGG | - | chr5_3:17013796-17013815 | Msa0802560:CDS | 45.0% |
! | CATCTGCTAGAGAGCTGTTT+TGG | - | chr5_3:17013902-17013921 | Msa0802560:intron | 45.0% |
TCTTACCTTGAGTTTGAGGG+AGG | - | chr5_3:17014129-17014148 | Msa0802560:intron | 45.0% | |
AATAGCCTCCCTCAAACTCA+AGG | + | chr5_3:17014137-17014156 | None:intergenic | 45.0% | |
ACATGGCATCCATGGATGAA+AGG | + | chr5_3:17011618-17011637 | None:intergenic | 45.0% | |
TGGAATTCCCCTCTTCTTGA+AGG | - | chr5_3:17014362-17014381 | Msa0802560:intron | 45.0% | |
ACTTAAGCGGCAGAGACTTT+AGG | + | chr5_3:17014500-17014519 | None:intergenic | 45.0% | |
AGCACAGAAAGCAACCATCA+TGG | + | chr5_3:17014562-17014581 | None:intergenic | 45.0% | |
ATGAAGAGTCGCAACTGTGA+AGG | + | chr5_3:17014669-17014688 | None:intergenic | 45.0% | |
!!! | ATTAAATGAAAAATATATTT+TGG | + | chr5_3:17008148-17008167 | None:intergenic | 5.0% |
!! | TCAATTATATAAATTTAATA+AGG | + | chr5_3:17009258-17009277 | None:intergenic | 5.0% |
!! | ATATATATATATATATATGA+CGG | + | chr5_3:17009827-17009846 | None:intergenic | 5.0% |
! | GTTTGGTCTTCTTGTAGGGG+TGG | + | chr5_3:17007533-17007552 | None:intergenic | 50.0% |
GAAGACGGGTCTCTTCGTTT+AGG | + | chr5_3:17007595-17007614 | None:intergenic | 50.0% | |
GAAGATGGAGTCTAGGAGTG+AGG | + | chr5_3:17007766-17007785 | None:intergenic | 50.0% | |
AGACTCGGAAGATGGAGTCT+AGG | + | chr5_3:17007773-17007792 | None:intergenic | 50.0% | |
TTTCCACGTCTTCTTCGGGA+AGG | - | chr5_3:17008328-17008347 | Msa0802560:intron | 50.0% | |
! | GCTCTTGTTGCTGAGTTGAC+TGG | - | chr5_3:17008465-17008484 | Msa0802560:intron | 50.0% |
TTAGCGGCTGCAAGAAGAAC+AGG | + | chr5_3:17008585-17008604 | None:intergenic | 50.0% | |
TGTTCTTCTTGCAGCCGCTA+AGG | - | chr5_3:17008584-17008603 | Msa0802560:intron | 50.0% | |
GTTCTTCTTGCAGCCGCTAA+GGG | - | chr5_3:17008585-17008604 | Msa0802560:intron | 50.0% | |
TTGTGGGCAAGTGGCAATTG+CGG | + | chr5_3:17008844-17008863 | None:intergenic | 50.0% | |
GATTCGGATTTGTGGGCAAG+TGG | + | chr5_3:17008853-17008872 | None:intergenic | 50.0% | |
ATGCCTTCTGTGTTCCCAAG+TGG | - | chr5_3:17008919-17008938 | Msa0802560:intron | 50.0% | |
! | TTGCCACTTGGGAACACAGA+AGG | + | chr5_3:17008925-17008944 | None:intergenic | 50.0% |
CGCAAGTACATCTCTTGGGT+AGG | - | chr5_3:17009716-17009735 | Msa0802560:intron | 50.0% | |
ATTCCGCACTGTGCATGAGA+AGG | + | chr5_3:17010185-17010204 | None:intergenic | 50.0% | |
AATACCCTCTTGCATCTGGC+TGG | - | chr5_3:17010992-17011011 | Msa0802560:intron | 50.0% | |
CTTCGGTGAAGATCAGAGGA+AGG | + | chr5_3:17011028-17011047 | None:intergenic | 50.0% | |
AATGGGATGAATGCAGGCTG+TGG | - | chr5_3:17011231-17011250 | Msa0802560:CDS | 50.0% | |
CACTAGCTCCTTGTGGCTTT+CGG | + | chr5_3:17011326-17011345 | None:intergenic | 50.0% | |
GAAAGCTGCAGCGAACATGA+TGG | + | chr5_3:17011416-17011435 | None:intergenic | 50.0% | |
GTCCCCCTTCAAACTCAAAG+TGG | + | chr5_3:17012670-17012689 | None:intergenic | 50.0% | |
TTGGCCTCAGCCTTTGCTTA+TGG | - | chr5_3:17013134-17013153 | Msa0802560:CDS | 50.0% | |
TCATAGCTTCTGCCCTATGG+TGG | - | chr5_3:17013545-17013564 | Msa0802560:CDS | 50.0% | |
! | AGGTACCAAAGGTGTAGGCA+AGG | + | chr5_3:17013804-17013823 | None:intergenic | 50.0% |
ATAACCAATCCAGAACCGGG+AGG | + | chr5_3:17013824-17013843 | None:intergenic | 50.0% | |
AACGGCGCGTTATGCAGAAA+AGG | - | chr5_3:17014470-17014489 | Msa0802560:intron | 50.0% | |
CTTCTCTGTGGTGTCCATGA+TGG | - | chr5_3:17014545-17014564 | Msa0802560:intron | 50.0% | |
AGGGGTGGATCATTGGGTGT+GGG | + | chr5_3:17007518-17007537 | None:intergenic | 55.0% | |
TAGGGGTGGATCATTGGGTG+TGG | + | chr5_3:17007519-17007538 | None:intergenic | 55.0% | |
!!! | GCGTTGGAGGCTGGTTTTAG+AGG | + | chr5_3:17007705-17007724 | None:intergenic | 55.0% |
! | TCTTGGGTAAGTGGCGTTGG+AGG | + | chr5_3:17007718-17007737 | None:intergenic | 55.0% |
AGGTCTTGGGTAAGTGGCGT+TGG | + | chr5_3:17007721-17007740 | None:intergenic | 55.0% | |
CACATTTGGACCCTCACCCA+TGG | - | chr5_3:17007832-17007851 | Msa0802560:intron | 55.0% | |
AGTCCTTCCCGAAGAAGACG+TGG | + | chr5_3:17008334-17008353 | None:intergenic | 55.0% | |
AAGAAGGGAGGGCAGGTAGT+TGG | - | chr5_3:17008519-17008538 | Msa0802560:intron | 55.0% | |
GTGGCAATTGCGGGAATCGT+TGG | + | chr5_3:17008834-17008853 | None:intergenic | 55.0% | |
TGTGGGCAAGTGGCAATTGC+GGG | + | chr5_3:17008843-17008862 | None:intergenic | 55.0% | |
TCCTGACAACCACACCCCAT+TGG | + | chr5_3:17010246-17010265 | None:intergenic | 55.0% | |
GGGGTGTGGTTGTCAGGAAT+CGG | - | chr5_3:17010248-17010267 | Msa0802560:intron | 55.0% | |
GGAGAGCAGGACCAGATCTT+CGG | + | chr5_3:17011045-17011064 | None:intergenic | 55.0% | |
! | AAGCGTTGTGCTTCTGTCCG+AGG | - | chr5_3:17013306-17013325 | Msa0802560:intron | 55.0% |
GTTGTGCTTCTGTCCGAGGA+TGG | - | chr5_3:17013310-17013329 | Msa0802560:intron | 55.0% | |
CCTACACCTTTGGTACCTCC+CGG | - | chr5_3:17013806-17013825 | Msa0802560:CDS | 55.0% | |
GGTAGAGAAGAAGGGAGGGC+AGG | - | chr5_3:17008512-17008531 | Msa0802560:intron | 60.0% | |
GCCAATGGGGTGTGGTTGTC+AGG | - | chr5_3:17010242-17010261 | Msa0802560:intron | 60.0% | |
GCTGCAGCTTTCACAGTCCC+TGG | - | chr5_3:17011424-17011443 | Msa0802560:intron | 60.0% | |
GCAGCTTTCACAGTCCCTGG+TGG | - | chr5_3:17011427-17011446 | Msa0802560:intron | 60.0% | |
!! | CCGGGAGGTACCAAAGGTGT+AGG | + | chr5_3:17013809-17013828 | None:intergenic | 60.0% |
!! | CCAGAACCGGGAGGTACCAA+AGG | + | chr5_3:17013815-17013834 | None:intergenic | 60.0% |
CCTTTGGTACCTCCCGGTTC+TGG | - | chr5_3:17013812-17013831 | Msa0802560:CDS | 60.0% | |
!! | GGTACCTCCCGGTTCTGGAT+TGG | - | chr5_3:17013817-17013836 | Msa0802560:intron | 60.0% |
! | GGGTAAGTGGCGTTGGAGGC+TGG | + | chr5_3:17007714-17007733 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 17007330 | 17014722 | 17007330 | ID=Msa0802560;Name=Msa0802560 |
chr5_3 | mRNA | 17007330 | 17014722 | 17007330 | ID=Msa0802560-mRNA-1;Parent=Msa0802560;Name=Msa0802560-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0.5|0.42|0.85|1|1|7|0|524 |
chr5_3 | exon | 17014686 | 17014722 | 17014686 | ID=Msa0802560-mRNA-1:exon:7130;Parent=Msa0802560-mRNA-1 |
chr5_3 | exon | 17013329 | 17013832 | 17013329 | ID=Msa0802560-mRNA-1:exon:7129;Parent=Msa0802560-mRNA-1 |
chr5_3 | exon | 17013073 | 17013240 | 17013073 | ID=Msa0802560-mRNA-1:exon:7128;Parent=Msa0802560-mRNA-1 |
chr5_3 | exon | 17012812 | 17012913 | 17012812 | ID=Msa0802560-mRNA-1:exon:7127;Parent=Msa0802560-mRNA-1 |
chr5_3 | exon | 17012053 | 17012112 | 17012053 | ID=Msa0802560-mRNA-1:exon:7126;Parent=Msa0802560-mRNA-1 |
chr5_3 | exon | 17011000 | 17011395 | 17011000 | ID=Msa0802560-mRNA-1:exon:7125;Parent=Msa0802560-mRNA-1 |
chr5_3 | exon | 17007330 | 17007637 | 17007330 | ID=Msa0802560-mRNA-1:exon:7124;Parent=Msa0802560-mRNA-1 |
chr5_3 | CDS | 17014686 | 17014722 | 17014686 | ID=Msa0802560-mRNA-1:cds;Parent=Msa0802560-mRNA-1 |
chr5_3 | CDS | 17013329 | 17013832 | 17013329 | ID=Msa0802560-mRNA-1:cds;Parent=Msa0802560-mRNA-1 |
chr5_3 | CDS | 17013073 | 17013240 | 17013073 | ID=Msa0802560-mRNA-1:cds;Parent=Msa0802560-mRNA-1 |
chr5_3 | CDS | 17012812 | 17012913 | 17012812 | ID=Msa0802560-mRNA-1:cds;Parent=Msa0802560-mRNA-1 |
chr5_3 | CDS | 17012053 | 17012112 | 17012053 | ID=Msa0802560-mRNA-1:cds;Parent=Msa0802560-mRNA-1 |
chr5_3 | CDS | 17011000 | 17011395 | 17011000 | ID=Msa0802560-mRNA-1:cds;Parent=Msa0802560-mRNA-1 |
chr5_3 | CDS | 17007330 | 17007637 | 17007330 | ID=Msa0802560-mRNA-1:cds;Parent=Msa0802560-mRNA-1 |
Gene Sequence |
Protein sequence |