AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802620 MtrunA17_Chr5g0410461 93.931 346 3 1 290 617 127 472 0.0 662
Msa0802620 MtrunA17_Chr5g0410171 45.306 735 237 14 1 607 34 731 0.0 550
Msa0802620 MtrunA17_Chr5g0410341 45.694 720 270 14 1 607 32 743 0.0 548
Msa0802620 MtrunA17_Chr5g0410371 74.587 303 58 2 331 615 1 302 9.18e-154 444
Msa0802620 MtrunA17_Chr5g0410201 59.271 329 109 4 299 607 2 325 2.16e-129 383
Msa0802620 MtrunA17_Chr5g0410271 58.232 328 112 4 300 607 2 324 8.48e-127 376
Msa0802620 MtrunA17_Chr6g0457101 38.484 673 289 15 20 606 51 684 4.01e-124 382
Msa0802620 MtrunA17_Chr6g0456101 39.706 680 303 20 20 603 66 734 4.10e-121 376
Msa0802620 MtrunA17_Chr5g0410581 53.936 343 137 4 291 613 459 800 2.89e-113 357
Msa0802620 MtrunA17_Chr5g0410581 40.129 309 125 9 4 275 77 362 1.03e-52 193
Msa0802620 MtrunA17_Chr5g0410471 81.776 214 8 2 3 185 105 318 1.55e-112 339
Msa0802620 MtrunA17_Chr6g0456141 52.252 333 134 6 290 603 51 377 2.65e-107 328
Msa0802620 MtrunA17_Chr5g0410381 71.220 205 48 3 89 288 44 242 2.24e-91 282
Msa0802620 MtrunA17_Chr5g0410191 58.247 194 76 2 414 607 2 190 4.58e-74 235
Msa0802620 MtrunA17_Chr5g0410451 56.250 208 89 2 409 615 36 242 8.42e-74 236
Msa0802620 MtrunA17_Chr5g0410411 54.468 235 74 5 4 207 73 305 8.15e-70 229
Msa0802620 MtrunA17_Chr5g0410541 56.481 216 86 5 399 613 13 221 1.85e-69 224
Msa0802620 MtrunA17_Chr2g0297701 33.090 547 314 13 73 608 65 570 5.19e-68 232
Msa0802620 MtrunA17_Chr5g0443001 29.739 575 310 13 91 610 69 604 2.49e-60 211
Msa0802620 MtrunA17_Chr2g0297681 31.066 544 304 15 89 608 194 690 8.08e-60 212
Msa0802620 MtrunA17_Chr2g0297691 30.741 540 311 14 89 608 196 692 7.99e-59 209
Msa0802620 MtrunA17_Chr2g0297491 41.111 270 153 4 340 608 114 378 9.38e-56 194
Msa0802620 MtrunA17_Chr2g0297651 30.499 541 310 15 89 608 196 691 1.62e-53 194
Msa0802620 MtrunA17_Chr2g0297481 30.885 531 275 18 112 609 4 475 4.01e-52 186
Msa0802620 MtrunA17_Chr3g0100741 26.705 528 340 10 91 590 71 579 5.08e-51 186
Msa0802620 MtrunA17_Chr3g0100301 30.162 431 218 10 169 592 40 394 1.11e-50 181
Msa0802620 MtrunA17_Chr5g0410511 46.078 204 108 2 414 616 2 204 3.29e-50 172
Msa0802620 MtrunA17_Chr2g0297711 37.407 270 162 3 341 608 263 527 2.21e-48 177
Msa0802620 MtrunA17_Chr5g0410561 47.685 216 78 5 24 207 1 213 2.36e-47 165
Msa0802620 MtrunA17_Chr3g0096941 27.151 523 343 12 91 589 71 579 3.11e-46 172
Msa0802620 MtrunA17_Chr5g0410211 47.343 207 76 5 89 288 17 197 3.59e-45 159
Msa0802620 MtrunA17_Chr5g0410181 56.618 136 54 2 472 607 1 131 3.60e-42 148
Msa0802620 MtrunA17_Chr2g0286601 33.935 277 170 3 331 603 408 675 1.72e-41 160
Msa0802620 MtrunA17_Chr5g0410291 46.377 207 73 6 89 288 17 192 3.51e-41 148
Msa0802620 MtrunA17_Chr3g0098481 32.917 240 156 3 372 609 97 333 9.40e-37 140
Msa0802620 MtrunA17_Chr2g0286551 35.379 277 164 5 343 614 400 666 1.27e-36 145
Msa0802620 MtrunA17_Chr2g0284501 37.452 259 141 6 344 591 400 648 3.26e-35 141
Msa0802620 MtrunA17_Chr5g0410501 47.183 142 56 2 291 413 147 288 3.79e-33 129
Msa0802620 MtrunA17_Chr3g0102001 37.500 232 137 3 376 606 510 734 1.58e-31 130
Msa0802620 MtrunA17_Chr2g0286561 32.500 200 131 1 404 603 5 200 9.70e-31 119
Msa0802620 MtrunA17_Chr2g0284541 39.189 222 125 4 344 563 384 597 1.22e-29 124
Msa0802620 MtrunA17_Chr3g0098301 28.866 291 178 8 330 596 101 386 8.22e-29 119
Msa0802620 MtrunA17_Chr5g0410441 57.609 92 35 2 342 429 15 106 1.63e-28 109
Msa0802620 MtrunA17_Chr5g0439061 32.895 228 148 2 376 603 504 726 1.65e-27 118
Msa0802620 MtrunA17_Chr3g0098531 28.216 241 169 3 370 609 48 285 3.86e-27 111
Msa0802620 MtrunA17_Chr5g0439081 32.632 190 120 3 428 616 30 212 3.07e-24 101
Msa0802620 MtrunA17_Chr5g0410551 47.619 105 36 2 331 416 1 105 1.22e-22 93.6
Msa0802620 MtrunA17_Chr6g0456151 33.480 227 106 6 20 207 66 286 1.38e-21 95.5
Msa0802620 MtrunA17_Chr5g0439051 33.684 190 120 3 418 606 23 207 8.66e-21 91.7
Msa0802620 MtrunA17_Chr1g0211541 30.081 246 150 5 329 554 217 460 1.53e-20 95.5
Msa0802620 MtrunA17_Chr1g0211531 28.251 223 136 4 322 523 231 450 4.20e-16 81.6
Msa0802620 MtrunA17_Chr1g0211511 25.600 250 164 4 322 551 8 255 3.60e-15 77.0
Msa0802620 MtrunA17_Chr3g0100921 40.000 100 60 0 463 562 2 101 3.09e-14 70.1
Msa0802620 MtrunA17_Chr2g0297521 41.176 85 49 1 406 490 1 84 4.19e-14 68.2
Msa0802620 MtrunA17_Chr2g0297611 37.805 82 50 1 429 510 10 90 3.32e-12 62.8
Msa0802620 MtrunA17_Chr5g0410251 43.038 79 40 1 1 74 30 108 9.98e-12 62.0
Msa0802620 MtrunA17_Chr6g0455841 28.571 196 110 8 343 536 18 185 5.53e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802620 AT3G18670.1 36.213 544 274 13 91 608 88 584 1.44e-98 313
Msa0802620 AT3G18670.2 34.465 589 278 13 91 608 88 639 4.98e-97 311
Msa0802620 AT5G04700.1 32.465 576 294 17 91 608 118 656 1.23e-71 244
Msa0802620 AT5G04690.1 33.026 542 297 15 91 608 113 612 1.01e-69 238
Msa0802620 AT5G04730.1 32.468 539 294 15 117 608 74 589 2.82e-69 236
Msa0802620 AT5G04690.2 32.112 573 295 15 91 608 113 646 3.25e-69 237
Msa0802620 AT5G04690.3 31.937 573 282 16 91 608 113 632 3.43e-66 229
Msa0802620 AT5G04680.2 31.127 559 275 15 118 608 12 528 1.39e-64 222
Msa0802620 AT5G04680.4 30.870 609 304 19 71 608 89 651 7.86e-64 223
Msa0802620 AT5G04680.1 31.856 609 327 21 71 608 89 680 2.36e-61 216
Msa0802620 AT5G04680.3 30.706 609 291 21 71 608 89 637 1.21e-60 214
Msa0802620 AT5G35810.1 38.603 272 157 6 343 608 65 332 5.19e-56 193
Msa0802620 AT3G54065.1 43.694 222 107 5 400 615 8 217 1.54e-48 169

Find 119 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTACTTTCATAAATAATT+TGG 0.159583 5_3:+17144460 None:intergenic
CATTATCGACATGATCTTAA+AGG 0.186021 5_3:-17140013 Msa0802620:CDS
CAGAACAATTCTTTATTCTT+TGG 0.203069 5_3:+17145255 None:intergenic
GTACTACAATGAACCACTTA+TGG 0.252983 5_3:+17139980 None:intergenic
TGTATCACTGCTGAAATATT+TGG 0.253668 5_3:-17144805 Msa0802620:intron
AAGAGAGATTCAATGGTTTA+AGG 0.258197 5_3:-17140983 Msa0802620:intron
TAGAACAAACAGAGAGAAAA+AGG 0.268023 5_3:+17140058 None:intergenic
TTTCCCTCTATGAATATGTT+AGG 0.273128 5_3:-17145598 None:intergenic
CAGTCTGGATAACGCCTAAA+AGG 0.301425 5_3:+17145569 None:intergenic
GCTCTTGTTGCACGCTATAC+TGG 0.302449 5_3:-17145042 Msa0802620:CDS
AATCATTTAGGCTCATTATA+TGG 0.310793 5_3:-17145418 Msa0802620:CDS
GGCACCCAATTGGGATTTCT+AGG 0.327771 5_3:-17144483 Msa0802620:CDS
TAAATGATTCCAGGCGCTTT+TGG 0.340866 5_3:+17145432 None:intergenic
AATTCGAAACTGATGCTTCA+TGG 0.348970 5_3:-17145540 Msa0802620:CDS
TCTCCGTCCCTACGTTGTTA+AGG 0.349696 5_3:-17144620 Msa0802620:CDS
CTCCGTCCCTACGTTGTTAA+GGG 0.352434 5_3:-17144619 Msa0802620:CDS
TTGCACCTGGCAGCACATTT+AGG 0.356259 5_3:-17141054 Msa0802620:CDS
ATTCTTCTAGCTGCCGCTAA+TGG 0.360168 5_3:-17144928 Msa0802620:CDS
TTACCTTGGAAGTTATTGTT+TGG 0.363753 5_3:-17140090 Msa0802620:CDS
ATTTATCAGGTAAGGATTGC+TGG 0.365909 5_3:+17144553 None:intergenic
TACTACAATGAACCACTTAT+GGG 0.368135 5_3:+17139981 None:intergenic
CATACGAAAATATGCCTCTA+TGG 0.371634 5_3:+17141178 None:intergenic
TACACACATTATGAAGTTAT+AGG 0.373654 5_3:-17141366 Msa0802620:CDS
TGATGCTTCATGGAAAATAA+AGG 0.374254 5_3:-17145530 Msa0802620:CDS
ACTAAGGCCGAGAATTTATC+AGG 0.379921 5_3:+17144540 None:intergenic
CTTTAAGATCATGTCGATAA+TGG 0.388292 5_3:+17140014 None:intergenic
TTTGGCCTAGAAATCCCAAT+TGG 0.395842 5_3:+17144478 None:intergenic
TTTCCAAGTGGCACCCAATT+GGG 0.405636 5_3:-17144492 Msa0802620:CDS
GCAACATCTTATACAATTGT+AGG 0.407639 5_3:-17140324 Msa0802620:CDS
CTTCAATTATGTCAGGAATC+AGG 0.410277 5_3:-17141407 Msa0802620:intron
GCTGCAGCCTTTACAGTGCC+AGG 0.415001 5_3:-17140276 Msa0802620:CDS
TTAGCGGCAGCTAGAAGAAT+AGG 0.427359 5_3:+17144931 None:intergenic
GAACTCGATTATTCCGTGTT+GGG 0.428128 5_3:+17141254 None:intergenic
GTCGAACACTTTGGAGTTGG+TGG 0.431728 5_3:+17144867 None:intergenic
CTTTCAATGAATATCTCATA+AGG 0.433992 5_3:+17140393 None:intergenic
CTTCACGCTGCTGTAATTGC+TGG 0.435727 5_3:-17145150 Msa0802620:CDS
GGTGGAAACGACGACAAAAC+TGG 0.435847 5_3:-17140255 Msa0802620:CDS
ATCCTTACCTGATAAATTCT+CGG 0.437868 5_3:-17144547 Msa0802620:CDS
TAGTGAAAGATGGAGAGAAA+TGG 0.438852 5_3:-17140359 Msa0802620:CDS
ATTATCGACATGATCTTAAA+GGG 0.440142 5_3:-17140012 Msa0802620:CDS
GATATTACAAGAACGATAAT+CGG 0.441300 5_3:+17139934 None:intergenic
GTGGAATTGTTGGTGAAAGT+TGG 0.451497 5_3:-17145114 Msa0802620:CDS
TTTCGAATTCTGAAACAGTC+TGG 0.454616 5_3:+17145554 None:intergenic
TAATGAGCCTAAATGATTCC+AGG 0.455349 5_3:+17145423 None:intergenic
CCCAGAAACGTTGCTAGAAA+AGG 0.455513 5_3:-17144974 Msa0802620:CDS
GGCCGAGAATTTATCAGGTA+AGG 0.460680 5_3:+17144545 None:intergenic
CAACTCATACATTCTGTCAA+TGG 0.460886 5_3:-17141126 Msa0802620:CDS
TCGAACACTTTGGAGTTGGT+GGG 0.469455 5_3:+17144868 None:intergenic
TCATTTGTTTATTGAACGGA+TGG 0.471650 5_3:+17139864 None:intergenic
TTAAAACAGCCAAAAGCGCC+TGG 0.474873 5_3:-17145441 Msa0802620:CDS
AAAAGCGCCTGGAATCATTT+AGG 0.476909 5_3:-17145430 Msa0802620:CDS
AAATGCAAAGAGAGATTCAA+TGG 0.476952 5_3:-17140990 Msa0802620:CDS
ATTCTCGGCCTTAGTTGCAT+TGG 0.477418 5_3:-17144532 Msa0802620:CDS
ATTTGATTTGTCGAACACTT+TGG 0.480243 5_3:+17144858 None:intergenic
TGGAATTGTTGGTGAAAGTT+GGG 0.480431 5_3:-17145113 Msa0802620:CDS
AGACATCGTATAGACTCGTT+TGG 0.481995 5_3:-17141087 Msa0802620:CDS
CAATTCTTTGTGTCCATTAG+CGG 0.482676 5_3:+17144915 None:intergenic
CGAACACTTTGGAGTTGGTG+GGG 0.483294 5_3:+17144869 None:intergenic
TTGCATTTGCAGAGCAGCAC+CGG 0.486301 5_3:+17141005 None:intergenic
TGTGGAAAATGTGGAATTGT+TGG 0.486891 5_3:-17145124 Msa0802620:CDS
TTCCCTCTATGAATATGTTA+GGG 0.490501 5_3:-17145597 None:intergenic
GTCGTCATTTGTTTATTGAA+CGG 0.491644 5_3:+17139860 None:intergenic
TATATTGATAATGATTGCTC+GGG 0.495481 5_3:+17144648 None:intergenic
AGTGAAAGATGGAGAGAAAT+GGG 0.498200 5_3:-17140358 Msa0802620:CDS
ATATATTGATAATGATTGCT+CGG 0.502639 5_3:+17144647 None:intergenic
TGAACTCGATTATTCCGTGT+TGG 0.510589 5_3:+17141253 None:intergenic
AATCCCAATTGGGTGCCACT+TGG 0.512054 5_3:+17144489 None:intergenic
ATACTCCCAAGTGCCATGAT+TGG 0.513042 5_3:+17139958 None:intergenic
CATCTTTCACTAGCTCCTCA+TGG 0.514505 5_3:+17140370 None:intergenic
TGCTGGAAATGTGGAAAATG+TGG 0.517608 5_3:-17145133 Msa0802620:CDS
TATGGCAAAGATTTAACAGC+CGG 0.518073 5_3:-17145400 Msa0802620:CDS
TATCGTTCTTGTAATATCAC+AGG 0.519358 5_3:-17139929 Msa0802620:CDS
TAGCGGCAGCTAGAAGAATA+GGG 0.520879 5_3:+17144932 None:intergenic
AGTTACTTCTGCCGAAGTGT+TGG 0.521693 5_3:-17141336 Msa0802620:CDS
TATGTTGTCATGTAAGAAGA+TGG 0.525735 5_3:+17140227 None:intergenic
TCTGATCGTCATAGCAGATC+CGG 0.526463 5_3:-17141024 Msa0802620:CDS
TCAGGTAAGGATTGCTGGAG+AGG 0.527967 5_3:+17144558 None:intergenic
TGGCAATAATTTGTTGCACC+TGG 0.529393 5_3:-17141067 Msa0802620:CDS
ATTCTTTATTCTTTGGAGAG+TGG 0.532153 5_3:+17145262 None:intergenic
GAACACTTTGGAGTTGGTGG+GGG 0.543191 5_3:+17144870 None:intergenic
CATATTCACTGCATTTCTCA+TGG 0.544524 5_3:-17140208 Msa0802620:CDS
GTTTCCACCTGGCACTGTAA+AGG 0.547912 5_3:+17140269 None:intergenic
CATGAGGAGCTAGTGAAAGA+TGG 0.552759 5_3:-17140369 Msa0802620:CDS
TTGGCCTAGAAATCCCAATT+GGG 0.552989 5_3:+17144479 None:intergenic
CTGCTATGACGATCAGATGA+AGG 0.554930 5_3:+17141030 None:intergenic
GTTCATTGTAGTACCAATCA+TGG 0.555376 5_3:-17139971 Msa0802620:CDS
ATGATTCCCTTAACAACGTA+GGG 0.560792 5_3:+17144613 None:intergenic
ACCTTGTTCATGATCTGCAC+CGG 0.561022 5_3:+17145381 None:intergenic
CATTTGTTTATTGAACGGAT+GGG 0.564108 5_3:+17139865 None:intergenic
ACTTTCTCAAGAGCTTACCT+TGG 0.568114 5_3:-17140104 Msa0802620:CDS
GTGCCACTTGGAAAAGATGT+AGG 0.572327 5_3:+17144501 None:intergenic
TAATAGTTCAAAGCTCAAAG+AGG 0.573010 5_3:-17141307 Msa0802620:CDS
AAGGAAGCCGAAAATGATGA+TGG 0.573881 5_3:-17140423 Msa0802620:CDS
AGACCAAACAATAACTTCCA+AGG 0.574401 5_3:+17140087 None:intergenic
AGGGATATGAAACCCATAAG+TGG 0.578644 5_3:-17139993 Msa0802620:CDS
GTAGTACCAATCATGGCACT+TGG 0.582602 5_3:-17139964 Msa0802620:CDS
TTTGTCGAACACTTTGGAGT+TGG 0.583740 5_3:+17144864 None:intergenic
TGCTGTAATTGCTGGAAATG+TGG 0.586779 5_3:-17145142 Msa0802620:CDS
ATGTTGTCATGTAAGAAGAT+GGG 0.590707 5_3:+17140228 None:intergenic
ATGAAATCTTCCGCTCAACA+TGG 0.593061 5_3:-17139894 Msa0802620:CDS
CATATCATTCAACTATCATG+TGG 0.604069 5_3:-17145493 Msa0802620:CDS
TACTGATATAGCAAAGTGCA+TGG 0.604722 5_3:-17145016 Msa0802620:intron
ACATTCTGTCAATGGACGGA+AGG 0.617474 5_3:-17141118 Msa0802620:CDS
GCCGTTGATAGCTGCCATAG+AGG 0.619118 5_3:-17141192 Msa0802620:intron
TAGTACCAATCATGGCACTT+GGG 0.623895 5_3:-17139963 Msa0802620:CDS
TTCCCTTAACAACGTAGGGA+CGG 0.626973 5_3:+17144617 None:intergenic
AAGGACCTAAATGTGCTGCC+AGG 0.631007 5_3:+17141049 None:intergenic
AATGATTCCCTTAACAACGT+AGG 0.635342 5_3:+17144612 None:intergenic
TCATACATTCTGTCAATGGA+CGG 0.635424 5_3:-17141122 Msa0802620:CDS
TCTATGAATATGTTAGGGCA+AGG 0.652204 5_3:-17145592 None:intergenic
TATACCAATGAAAATCAAGA+CGG 0.658060 5_3:+17140152 None:intergenic
ATATGCATGCAAGACGAACA+CGG 0.664176 5_3:-17145078 Msa0802620:CDS
ATGTTGCATGCATCCCAACA+CGG 0.665878 5_3:-17141267 Msa0802620:CDS
AAAGGCTGCAGCAAACATGA+TGG 0.673254 5_3:+17140287 None:intergenic
GCCGGTGCAGATCATGAACA+AGG 0.680709 5_3:-17145382 Msa0802620:intron
ATGCAACATTGCTTCATACG+CGG 0.681582 5_3:+17141281 None:intergenic
GCAGCCTTTACAGTGCCAGG+TGG 0.698792 5_3:-17140273 Msa0802620:CDS
GGCTGCAGCAAACATGATGG+TGG 0.726270 5_3:+17140290 None:intergenic
GATATTCATTGAAAGCCATG+AGG 0.729208 5_3:-17140385 Msa0802620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATAATATGATACAA+TGG - chr5_3:17141590-17141609 Msa0802620:intron 10.0%
!! AATAAAAAAAAGATAAGTAA+AGG - chr5_3:17141845-17141864 Msa0802620:intron 10.0%
!! ATAAAAAAAAGATAAGTAAA+GGG - chr5_3:17141846-17141865 Msa0802620:intron 10.0%
!!! TTATCTTTTATAAAAAAAAC+CGG + chr5_3:17141956-17141975 None:intergenic 10.0%
!!! ATGTATTTAGTTTATAATAT+TGG - chr5_3:17141994-17142013 Msa0802620:intron 10.0%
!!! AATTTTTTATAAGAGAAAAA+TGG + chr5_3:17142044-17142063 None:intergenic 10.0%
!!! AATATTTTCTTTTTAAAAGA+GGG + chr5_3:17142361-17142380 None:intergenic 10.0%
!!! AAATATTTTCTTTTTAAAAG+AGG + chr5_3:17142362-17142381 None:intergenic 10.0%
!! TATATTAGTAATTATATTGT+AGG + chr5_3:17143847-17143866 None:intergenic 10.0%
!! AATATAATTACTAATATAGT+TGG - chr5_3:17143849-17143868 Msa0802620:intron 10.0%
!! TCTAATATTGAATTAAAATA+TGG + chr5_3:17144543-17144562 None:intergenic 10.0%
!! ACTTACTTTCATAAATAATT+TGG + chr5_3:17140990-17141009 None:intergenic 15.0%
!! ATAGTTTAAATAAAGTTAGA+TGG - chr5_3:17141083-17141102 Msa0802620:CDS 15.0%
!! TATTATCATATTACTAACTT+AGG + chr5_3:17141267-17141286 None:intergenic 15.0%
!! TCAATTAATATAAAAAGAAG+CGG - chr5_3:17141442-17141461 Msa0802620:intron 15.0%
!! TAAATTTATATTATTCCTTC+CGG - chr5_3:17141934-17141953 Msa0802620:intron 15.0%
!! AATATTGAACTATCATTATA+TGG + chr5_3:17142097-17142116 None:intergenic 15.0%
!! GTAATAAAATATTTGAATAG+AGG - chr5_3:17142144-17142163 Msa0802620:intron 15.0%
!!! ATTAATGAGTTTTTTTTTAC+TGG + chr5_3:17143138-17143157 None:intergenic 15.0%
!!! ATATCAATTGTTATTAGTAT+TGG + chr5_3:17143718-17143737 None:intergenic 15.0%
!! TTAAGACAATTAATTTAGAT+GGG + chr5_3:17144493-17144512 None:intergenic 15.0%
!!! TTTAAGACAATTAATTTAGA+TGG + chr5_3:17144494-17144513 None:intergenic 15.0%
!! TTTATAACATGTAATCTAAA+AGG + chr5_3:17144630-17144649 None:intergenic 15.0%
!!! TAAAAATGAGTTAGTTTTTT+TGG - chr5_3:17144763-17144782 Msa0802620:intron 15.0%
!! ATACTGTAAATTAAATAGAT+TGG + chr5_3:17144927-17144946 None:intergenic 15.0%
!! TTGTCATAAAAATCAGTTTA+TGG + chr5_3:17140114-17140133 None:intergenic 20.0%
!! ATCAAATTCTTGAATGTTAA+TGG - chr5_3:17140146-17140165 Msa0802620:CDS 20.0%
!!! ACTTTTTTTATTCAAATGTG+TGG - chr5_3:17140722-17140741 Msa0802620:intron 20.0%
!!! ATATATTGATAATGATTGCT+CGG + chr5_3:17140803-17140822 None:intergenic 20.0%
!!! TCACACTATTCTTTTTTTAT+TGG - chr5_3:17141012-17141031 Msa0802620:CDS 20.0%
!! TAATCTGAATAGTATCTATT+GGG + chr5_3:17141138-17141157 None:intergenic 20.0%
!! TTAATCTGAATAGTATCTAT+TGG + chr5_3:17141139-17141158 None:intergenic 20.0%
!! CAATTAATATAAAAAGAAGC+GGG - chr5_3:17141443-17141462 Msa0802620:intron 20.0%
!! ATAATATGATACAATGGTTA+TGG - chr5_3:17141596-17141615 Msa0802620:intron 20.0%
!! TCTTATAAAAAATTACCGAA+AGG - chr5_3:17142050-17142069 Msa0802620:intron 20.0%
!! ATAAAATATTTGAATAGAGG+AGG - chr5_3:17142147-17142166 Msa0802620:intron 20.0%
!!! TTTTTCTCTTTAACTATTTC+AGG - chr5_3:17142593-17142612 Msa0802620:intron 20.0%
!! CCATTTATATATATTCATGT+AGG + chr5_3:17142706-17142725 None:intergenic 20.0%
!! CCTACATGAATATATATAAA+TGG - chr5_3:17142703-17142722 Msa0802620:intron 20.0%
!! TTGTATATACGATCAAATAT+TGG - chr5_3:17143572-17143591 Msa0802620:intron 20.0%
!!! AAATATGGTTCAATATTTTG+CGG + chr5_3:17143810-17143829 None:intergenic 20.0%
!! TTAGTAATTATATTGTAGGA+GGG + chr5_3:17143843-17143862 None:intergenic 20.0%
!! ATTAGTAATTATATTGTAGG+AGG + chr5_3:17143844-17143863 None:intergenic 20.0%
!!! TGTCTTAGCATTTAAAATAT+TGG - chr5_3:17143893-17143912 Msa0802620:intron 20.0%
!!! TATTAAATTTTCCAACACTT+CGG + chr5_3:17144125-17144144 None:intergenic 20.0%
!! ACTTATATTTCATAACAGAA+GGG + chr5_3:17144744-17144763 None:intergenic 20.0%
!! TACTTATATTTCATAACAGA+AGG + chr5_3:17144745-17144764 None:intergenic 20.0%
! AATCATTTAGGCTCATTATA+TGG - chr5_3:17140029-17140048 Msa0802620:CDS 25.0%
!! GGAACTTTTAAATCAGTTAA+TGG + chr5_3:17140093-17140112 None:intergenic 25.0%
! TAACATTCAAGAATTTGATG+AGG + chr5_3:17140145-17140164 None:intergenic 25.0%
! CAGAACAATTCTTTATTCTT+TGG + chr5_3:17140195-17140214 None:intergenic 25.0%
! CAAAGAATAAAGAATTGTTC+TGG - chr5_3:17140193-17140212 Msa0802620:CDS 25.0%
!!! TATATTGATAATGATTGCTC+GGG + chr5_3:17140802-17140821 None:intergenic 25.0%
!!! ATTCTTTTTTTATTGGTACC+AGG - chr5_3:17141019-17141038 Msa0802620:CDS 25.0%
! CAATATGTATTTCAGAGTAT+TGG + chr5_3:17141053-17141072 None:intergenic 25.0%
! TGATAATAACGAATTGATGA+TGG - chr5_3:17141279-17141298 Msa0802620:CDS 25.0%
!! TATGGTGATTTGTACATTTA+TGG - chr5_3:17141614-17141633 Msa0802620:intron 25.0%
! TAAGTTATTTAAAAAGGACG+TGG - chr5_3:17141645-17141664 Msa0802620:intron 25.0%
! GTGGAACAAATATAAGAAAA+AGG - chr5_3:17141664-17141683 Msa0802620:intron 25.0%
!! ATTTTAAATGATCATCGTCA+TGG + chr5_3:17141886-17141905 None:intergenic 25.0%
! CACTAATGTTTATAAAGAAC+TGG + chr5_3:17141912-17141931 None:intergenic 25.0%
!! CTTTTATAAAAAAAACCGGA+AGG + chr5_3:17141952-17141971 None:intergenic 25.0%
! TTAAAGCAAAACTAAATCCA+AGG - chr5_3:17142267-17142286 Msa0802620:intron 25.0%
! TAAAGCAAAACTAAATCCAA+GGG - chr5_3:17142268-17142287 Msa0802620:intron 25.0%
! TTCAAATGGAGAAAGATAAA+TGG + chr5_3:17142335-17142354 None:intergenic 25.0%
! TTAAAAGAGGGTTATTCAAA+TGG + chr5_3:17142349-17142368 None:intergenic 25.0%
! TCATGTAGGTAATAAAAAAC+AGG + chr5_3:17142692-17142711 None:intergenic 25.0%
!! TGGTATCAATATTTCTCTTT+TGG - chr5_3:17142765-17142784 Msa0802620:intron 25.0%
! TTCCATTACCTAGATATTAA+TGG - chr5_3:17142968-17142987 Msa0802620:intron 25.0%
! TACCATTAATATCTAGGTAA+TGG + chr5_3:17142973-17142992 None:intergenic 25.0%
! TTTACGTACCATTAATATCT+AGG + chr5_3:17142979-17142998 None:intergenic 25.0%
!!! TCAAATATTGGTGATGAATT+AGG - chr5_3:17143172-17143191 Msa0802620:intron 25.0%
!!! CAAATATTGGTGATGAATTA+GGG - chr5_3:17143173-17143192 Msa0802620:intron 25.0%
!!! AAATATTGGTGATGAATTAG+GGG - chr5_3:17143174-17143193 Msa0802620:intron 25.0%
!!! TTCTTTTTTCAAAGAAACGA+GGG + chr5_3:17143275-17143294 None:intergenic 25.0%
!!! GAGGGATTATGTTTTAAATA+TGG + chr5_3:17143825-17143844 None:intergenic 25.0%
! CAATTCGAATTAAGCATATA+AGG + chr5_3:17143986-17144005 None:intergenic 25.0%
! TACACACATTATGAAGTTAT+AGG - chr5_3:17144081-17144100 Msa0802620:intron 25.0%
!! CTATACCATGTTTTGTAAAA+TGG + chr5_3:17144601-17144620 None:intergenic 25.0%
!! CATTTTACAAAACATGGTAT+AGG - chr5_3:17144599-17144618 Msa0802620:CDS 25.0%
! GTGTTTCAACAACATTTATT+AGG + chr5_3:17144669-17144688 None:intergenic 25.0%
!!! ATTTTAGAGTACTGAACATA+TGG + chr5_3:17144691-17144710 None:intergenic 25.0%
! CTTATATTTCATAACAGAAG+GGG + chr5_3:17144743-17144762 None:intergenic 25.0%
! TAACGAAAGTTTGATGTATT+TGG + chr5_3:17144790-17144809 None:intergenic 25.0%
! AACGAAATATAAGCAAAAGT+TGG + chr5_3:17144814-17144833 None:intergenic 25.0%
! CTGTAAATTAAATAGATTGG+TGG + chr5_3:17144924-17144943 None:intergenic 25.0%
! CTTTCAATGAATATCTCATA+AGG + chr5_3:17145057-17145076 None:intergenic 25.0%
! TATACCAATGAAAATCAAGA+CGG + chr5_3:17145298-17145317 None:intergenic 25.0%
! ATTATCGACATGATCTTAAA+GGG - chr5_3:17145435-17145454 Msa0802620:CDS 25.0%
! GATATTACAAGAACGATAAT+CGG + chr5_3:17145516-17145535 None:intergenic 25.0%
TGATGCTTCATGGAAAATAA+AGG - chr5_3:17139917-17139936 Msa0802620:CDS 30.0%
CATATCATTCAACTATCATG+TGG - chr5_3:17139954-17139973 Msa0802620:CDS 30.0%
! ATTCTTTATTCTTTGGAGAG+TGG + chr5_3:17140188-17140207 None:intergenic 30.0%
! GAATAAAGAATTGTTCTGGA+AGG - chr5_3:17140197-17140216 Msa0802620:CDS 30.0%
CTCGAATGTATATATGACAT+CGG - chr5_3:17140257-17140276 Msa0802620:CDS 30.0%
!! ATTTGATTTGTCGAACACTT+TGG + chr5_3:17140592-17140611 None:intergenic 30.0%
TGTATCACTGCTGAAATATT+TGG - chr5_3:17140642-17140661 Msa0802620:intron 30.0%
ATCCTTACCTGATAAATTCT+CGG - chr5_3:17140900-17140919 Msa0802620:intron 30.0%
! TATCTCTTTGAGTTAAAACG+TGG - chr5_3:17141207-17141226 Msa0802620:intron 30.0%
! ATCTCTTTGAGTTAAAACGT+GGG - chr5_3:17141208-17141227 Msa0802620:intron 30.0%
TCATCAAATGATGAATCGTT+CGG - chr5_3:17141722-17141741 Msa0802620:intron 30.0%
ATCTACATATACTCTCCTTT+CGG + chr5_3:17142068-17142087 None:intergenic 30.0%
!!! GGATTTAGTTTTGCTTTAAG+TGG + chr5_3:17142266-17142285 None:intergenic 30.0%
AGTATGATATTGCCGAAATT+GGG - chr5_3:17142432-17142451 Msa0802620:intron 30.0%
! CAAAACCTATTCCTTTTAAC+CGG - chr5_3:17142640-17142659 Msa0802620:intron 30.0%
!! TCATAAAAGTACCGGTTAAA+AGG + chr5_3:17142654-17142673 None:intergenic 30.0%
! AACTTGTGTCATAAAAGTAC+CGG + chr5_3:17142662-17142681 None:intergenic 30.0%
TTCCCTCACATTTCAAATAT+TGG - chr5_3:17143160-17143179 Msa0802620:intron 30.0%
! CACCAATATTTGAAATGTGA+GGG + chr5_3:17143165-17143184 None:intergenic 30.0%
! TCACCAATATTTGAAATGTG+AGG + chr5_3:17143166-17143185 None:intergenic 30.0%
!!! TCTTTTTTCAAAGAAACGAG+GGG + chr5_3:17143274-17143293 None:intergenic 30.0%
!!! GTTCTTTTTTCAAAGAAACG+AGG + chr5_3:17143276-17143295 None:intergenic 30.0%
ATTCAAAAAACGTGTTAGCA+TGG - chr5_3:17143437-17143456 Msa0802620:intron 30.0%
TCATGATGTGATTTATGAGT+CGG + chr5_3:17143469-17143488 None:intergenic 30.0%
! ACATGTTTTCCTACTGATAT+AGG + chr5_3:17143660-17143679 None:intergenic 30.0%
TGATTCCTGACATAATTGAA+GGG + chr5_3:17144041-17144060 None:intergenic 30.0%
TAATAGTTCAAAGCTCAAAG+AGG - chr5_3:17144140-17144159 Msa0802620:intron 30.0%
AAATGCAAAGAGAGATTCAA+TGG - chr5_3:17144457-17144476 Msa0802620:intron 30.0%
AAGAGAGATTCAATGGTTTA+AGG - chr5_3:17144464-17144483 Msa0802620:intron 30.0%
AATTACACTCCAACAGTATT+AGG - chr5_3:17144708-17144727 Msa0802620:intron 30.0%
ATGTTGAAACACATGAATCT+TGG + chr5_3:17144867-17144886 None:intergenic 30.0%
AATAGATTGGTGGAATTATG+TGG + chr5_3:17144914-17144933 None:intergenic 30.0%
! AGTTTTACATCCCAAGTTTA+AGG - chr5_3:17145005-17145024 Msa0802620:intron 30.0%
! CTTCTTACCATCATCATTTT+CGG + chr5_3:17145034-17145053 None:intergenic 30.0%
GCAACATCTTATACAATTGT+AGG - chr5_3:17145123-17145142 Msa0802620:CDS 30.0%
ATGTTGTCATGTAAGAAGAT+GGG + chr5_3:17145222-17145241 None:intergenic 30.0%
TATGTTGTCATGTAAGAAGA+TGG + chr5_3:17145223-17145242 None:intergenic 30.0%
TTACCTTGGAAGTTATTGTT+TGG - chr5_3:17145357-17145376 Msa0802620:intron 30.0%
TAGAACAAACAGAGAGAAAA+AGG + chr5_3:17145392-17145411 None:intergenic 30.0%
!! CTTTAAGATCATGTCGATAA+TGG + chr5_3:17145436-17145455 None:intergenic 30.0%
CATTATCGACATGATCTTAA+AGG - chr5_3:17145434-17145453 Msa0802620:CDS 30.0%
TACTACAATGAACCACTTAT+GGG + chr5_3:17145469-17145488 None:intergenic 30.0%
TATCGTTCTTGTAATATCAC+AGG - chr5_3:17145518-17145537 Msa0802620:CDS 30.0%
CATTTGTTTATTGAACGGAT+GGG + chr5_3:17145585-17145604 None:intergenic 30.0%
TCATTTGTTTATTGAACGGA+TGG + chr5_3:17145586-17145605 None:intergenic 30.0%
!! TTTCGAATTCTGAAACAGTC+TGG + chr5_3:17139896-17139915 None:intergenic 35.0%
AATTCGAAACTGATGCTTCA+TGG - chr5_3:17139907-17139926 Msa0802620:CDS 35.0%
TAATGAGCCTAAATGATTCC+AGG + chr5_3:17140027-17140046 None:intergenic 35.0%
TATGGCAAAGATTTAACAGC+CGG - chr5_3:17140047-17140066 Msa0802620:CDS 35.0%
TTGAATGTTAATGGCAGATG+TGG - chr5_3:17140155-17140174 Msa0802620:CDS 35.0%
TCCATACCGATATTTCCAAT+AGG + chr5_3:17140237-17140256 None:intergenic 35.0%
TGTGGAAAATGTGGAATTGT+TGG - chr5_3:17140323-17140342 Msa0802620:CDS 35.0%
! TGGAATTGTTGGTGAAAGTT+GGG - chr5_3:17140334-17140353 Msa0802620:CDS 35.0%
TACTGATATAGCAAAGTGCA+TGG - chr5_3:17140431-17140450 Msa0802620:CDS 35.0%
TGCATGGTAGAGGAAATAAA+GGG - chr5_3:17140447-17140466 Msa0802620:CDS 35.0%
CAATTCTTTGTGTCCATTAG+CGG + chr5_3:17140535-17140554 None:intergenic 35.0%
ATGATTCCCTTAACAACGTA+GGG + chr5_3:17140837-17140856 None:intergenic 35.0%
AATGATTCCCTTAACAACGT+AGG + chr5_3:17140838-17140857 None:intergenic 35.0%
!!! TCTGATTCTGAGATTTTGCT+AGG + chr5_3:17140868-17140887 None:intergenic 35.0%
ATTTATCAGGTAAGGATTGC+TGG + chr5_3:17140897-17140916 None:intergenic 35.0%
! CATTTTTGCCAATGCAACTA+AGG + chr5_3:17140926-17140945 None:intergenic 35.0%
! GTTGTGAGTTTTTACGGTTT+TGG - chr5_3:17141465-17141484 Msa0802620:intron 35.0%
!!! TTTTTACGGTTTTGGTGATG+TGG - chr5_3:17141473-17141492 Msa0802620:intron 35.0%
TGGTGCAATTACTGAGATTA+TGG - chr5_3:17141493-17141512 Msa0802620:intron 35.0%
GGTGCAATTACTGAGATTAT+GGG - chr5_3:17141494-17141513 Msa0802620:intron 35.0%
CAATTACTGAGATTATGGGT+GGG - chr5_3:17141498-17141517 Msa0802620:intron 35.0%
AATTACTGAGATTATGGGTG+GGG - chr5_3:17141499-17141518 Msa0802620:intron 35.0%
CATCAAATGATGAATCGTTC+GGG - chr5_3:17141723-17141742 Msa0802620:intron 35.0%
! AACCAAACTACCGATTACTA+GGG - chr5_3:17141787-17141806 Msa0802620:intron 35.0%
TTGTTAATCCTTTAGATCCC+AGG + chr5_3:17141824-17141843 None:intergenic 35.0%
GAGTATGATATTGCCGAAAT+TGG - chr5_3:17142431-17142450 Msa0802620:intron 35.0%
GTTGTTCGAATAATGCTTTC+CGG - chr5_3:17142560-17142579 Msa0802620:intron 35.0%
AGAGAAAAAACATAGCGTAC+CGG + chr5_3:17142582-17142601 None:intergenic 35.0%
!! AAGTACCGGTTAAAAGGAAT+AGG + chr5_3:17142648-17142667 None:intergenic 35.0%
! TTTTGGCCAGTAAAGCTTTT+GGG - chr5_3:17142782-17142801 Msa0802620:intron 35.0%
!!! CTGATTTTGCTGATTTGTTC+AGG - chr5_3:17142893-17142912 Msa0802620:intron 35.0%
TTACTCTGTAAGATATTCCG+TGG - chr5_3:17142920-17142939 Msa0802620:intron 35.0%
TAACAACTCCAAGACTGATT+AGG - chr5_3:17144014-17144033 Msa0802620:intron 35.0%
CTGATTCCTGACATAATTGA+AGG + chr5_3:17144042-17144061 None:intergenic 35.0%
CTTCAATTATGTCAGGAATC+AGG - chr5_3:17144040-17144059 Msa0802620:intron 35.0%
TCAACGGCTGAAAGAAAATT+AGG + chr5_3:17144243-17144262 None:intergenic 35.0%
CATACGAAAATATGCCTCTA+TGG + chr5_3:17144272-17144291 None:intergenic 35.0%
CAACTCATACATTCTGTCAA+TGG - chr5_3:17144321-17144340 Msa0802620:intron 35.0%
TCATACATTCTGTCAATGGA+CGG - chr5_3:17144325-17144344 Msa0802620:intron 35.0%
!! TCAACGTATACTAGCTTTGT+TGG - chr5_3:17144575-17144594 Msa0802620:CDS 35.0%
!! GTTGGCCATTTTACAAAACA+TGG - chr5_3:17144593-17144612 Msa0802620:CDS 35.0%
TGTTTCGTACCTAATACTGT+TGG + chr5_3:17144720-17144739 None:intergenic 35.0%
! TTTTCGGCTTCCTTAAACTT+GGG + chr5_3:17145018-17145037 None:intergenic 35.0%
! ATTTTCGGCTTCCTTAAACT+TGG + chr5_3:17145019-17145038 None:intergenic 35.0%
GATATTCATTGAAAGCCATG+AGG - chr5_3:17145062-17145081 Msa0802620:CDS 35.0%
TAGTGAAAGATGGAGAGAAA+TGG - chr5_3:17145088-17145107 Msa0802620:CDS 35.0%
AGTGAAAGATGGAGAGAAAT+GGG - chr5_3:17145089-17145108 Msa0802620:CDS 35.0%
CATATTCACTGCATTTCTCA+TGG - chr5_3:17145239-17145258 Msa0802620:intron 35.0%
! ACTTCCGTCTTGATTTTCAT+TGG - chr5_3:17145291-17145310 Msa0802620:intron 35.0%
AGACCAAACAATAACTTCCA+AGG + chr5_3:17145363-17145382 None:intergenic 35.0%
GTACTACAATGAACCACTTA+TGG + chr5_3:17145470-17145489 None:intergenic 35.0%
GTTCATTGTAGTACCAATCA+TGG - chr5_3:17145476-17145495 Msa0802620:CDS 35.0%
! TAAATGATTCCAGGCGCTTT+TGG + chr5_3:17140018-17140037 None:intergenic 40.0%
!! AAAAGCGCCTGGAATCATTT+AGG - chr5_3:17140017-17140036 Msa0802620:CDS 40.0%
GGTACGCCTATTGGAAATAT+CGG - chr5_3:17140228-17140247 Msa0802620:CDS 40.0%
GCCTATTGGAAATATCGGTA+TGG - chr5_3:17140233-17140252 Msa0802620:CDS 40.0%
!! TATATATGACATCGGCTTCC+AGG - chr5_3:17140265-17140284 Msa0802620:CDS 40.0%
TGCTGTAATTGCTGGAAATG+TGG - chr5_3:17140305-17140324 Msa0802620:CDS 40.0%
TGCTGGAAATGTGGAAAATG+TGG - chr5_3:17140314-17140333 Msa0802620:CDS 40.0%
! GTGGAATTGTTGGTGAAAGT+TGG - chr5_3:17140333-17140352 Msa0802620:CDS 40.0%
ATATGCATGCAAGACGAACA+CGG - chr5_3:17140369-17140388 Msa0802620:CDS 40.0%
TATAGCAAAGTGCATGGTAG+AGG - chr5_3:17140437-17140456 Msa0802620:CDS 40.0%
GTGCATGGTAGAGGAAATAA+AGG - chr5_3:17140446-17140465 Msa0802620:CDS 40.0%
!! CCTTTTCTAGCAACGTTTCT+GGG + chr5_3:17140476-17140495 None:intergenic 40.0%
!! TCCTTTTCTAGCAACGTTTC+TGG + chr5_3:17140477-17140496 None:intergenic 40.0%
!! TTTGTCGAACACTTTGGAGT+TGG + chr5_3:17140586-17140605 None:intergenic 40.0%
ACTAAGGCCGAGAATTTATC+AGG + chr5_3:17140910-17140929 None:intergenic 40.0%
! ATGCCTACATCTTTTCCAAG+TGG - chr5_3:17140943-17140962 Msa0802620:intron 40.0%
TTGGCCTAGAAATCCCAATT+GGG + chr5_3:17140971-17140990 None:intergenic 40.0%
TTTGGCCTAGAAATCCCAAT+TGG + chr5_3:17140972-17140991 None:intergenic 40.0%
!! AGAGTATTGGAATGTTTGCC+TGG + chr5_3:17141040-17141059 None:intergenic 40.0%
GTTAAAACGTGGGTTCAATG+TGG - chr5_3:17141218-17141237 Msa0802620:intron 40.0%
CATGGAAAATCTCAGTGTTG+AGG + chr5_3:17141364-17141383 None:intergenic 40.0%
ATGTGAGATTGAGGTTCAAC+TGG - chr5_3:17141387-17141406 Msa0802620:CDS 40.0%
!!! AAGCGGGTTGTGAGTTTTTA+CGG - chr5_3:17141459-17141478 Msa0802620:intron 40.0%
GCAATTACTGAGATTATGGG+TGG - chr5_3:17141497-17141516 Msa0802620:intron 40.0%
ATTAGGCTTAAGAGGGGATT+AGG - chr5_3:17141523-17141542 Msa0802620:intron 40.0%
TTAGGCTTAAGAGGGGATTA+GGG - chr5_3:17141524-17141543 Msa0802620:intron 40.0%
!! GGGAGAACAAGTTGGATTTT+TGG - chr5_3:17141743-17141762 Msa0802620:intron 40.0%
! CAACCAAACTACCGATTACT+AGG - chr5_3:17141786-17141805 Msa0802620:intron 40.0%
! ACCAAACTACCGATTACTAG+GGG - chr5_3:17141788-17141807 Msa0802620:intron 40.0%
AAAAGAGTCCCCCTAGTAAT+CGG + chr5_3:17141800-17141819 None:intergenic 40.0%
! CTCTTTTTCCTGGGATCTAA+AGG - chr5_3:17141813-17141832 Msa0802620:intron 40.0%
AAAGATAAATGGTGCGAGAG+AGG + chr5_3:17142324-17142343 None:intergenic 40.0%
CAGCAACACATGTTACCTTT+CGG + chr5_3:17142466-17142485 None:intergenic 40.0%
! ACTGCGGAACAAATCTTTTG+TGG + chr5_3:17142506-17142525 None:intergenic 40.0%
! CTTTTGGCCAGTAAAGCTTT+TGG - chr5_3:17142781-17142800 Msa0802620:intron 40.0%
GACATACCCAAAAGCTTTAC+TGG + chr5_3:17142791-17142810 None:intergenic 40.0%
CCAACAAATATGCAACTCCA+CGG + chr5_3:17142940-17142959 None:intergenic 40.0%
AAAACTGTCTGCAACTCATG+CGG - chr5_3:17143631-17143650 Msa0802620:intron 40.0%
ATGCGGAAACCTATATCAGT+AGG - chr5_3:17143648-17143667 Msa0802620:intron 40.0%
!! TCGATTTGTTGACTGGTGTA+TGG + chr5_3:17143782-17143801 None:intergenic 40.0%
TAGGTCCCTTCAATTATGTC+AGG - chr5_3:17144033-17144052 Msa0802620:intron 40.0%
ATGCAACATTGCTTCATACG+CGG + chr5_3:17144169-17144188 None:intergenic 40.0%
GAACTCGATTATTCCGTGTT+GGG + chr5_3:17144196-17144215 None:intergenic 40.0%
TGAACTCGATTATTCCGTGT+TGG + chr5_3:17144197-17144216 None:intergenic 40.0%
TCGAGTTCATAAATGCCATG+AGG - chr5_3:17144208-17144227 Msa0802620:intron 40.0%
CGAGTTCATAAATGCCATGA+GGG - chr5_3:17144209-17144228 Msa0802620:intron 40.0%
! ATTAGGATTAGCATCCCTCA+TGG + chr5_3:17144226-17144245 None:intergenic 40.0%
AGACATCGTATAGACTCGTT+TGG - chr5_3:17144360-17144379 Msa0802620:intron 40.0%
!! TGGCAATAATTTGTTGCACC+TGG - chr5_3:17144380-17144399 Msa0802620:intron 40.0%
GTTGTTTATGATACCACTGC+AGG - chr5_3:17144972-17144991 Msa0802620:CDS 40.0%
AAGGAAGCCGAAAATGATGA+TGG - chr5_3:17145024-17145043 Msa0802620:CDS 40.0%
ACTTTCTCAAGAGCTTACCT+TGG - chr5_3:17145343-17145362 Msa0802620:intron 40.0%
AGGGATATGAAACCCATAAG+TGG - chr5_3:17145454-17145473 Msa0802620:CDS 40.0%
TAGTACCAATCATGGCACTT+GGG - chr5_3:17145484-17145503 Msa0802620:CDS 40.0%
ATGAAATCTTCCGCTCAACA+TGG - chr5_3:17145553-17145572 Msa0802620:CDS 40.0%
! TGGGATTTTTCCATGTTGAG+CGG + chr5_3:17145566-17145585 None:intergenic 40.0%
! ATGTTAGGGCAAGGCCTTTT+AGG - chr5_3:17139864-17139883 Msa0802620:CDS 45.0%
CAGTCTGGATAACGCCTAAA+AGG + chr5_3:17139881-17139900 None:intergenic 45.0%
!! TTAAAACAGCCAAAAGCGCC+TGG - chr5_3:17140006-17140025 Msa0802620:CDS 45.0%
ACCTTGTTCATGATCTGCAC+CGG + chr5_3:17140069-17140088 None:intergenic 45.0%
!! TTGTTCTGGAAGGTGATGAG+AGG - chr5_3:17140207-17140226 Msa0802620:CDS 45.0%
CCCAGAAACGTTGCTAGAAA+AGG - chr5_3:17140473-17140492 Msa0802620:intron 45.0%
TAGCGGCAGCTAGAAGAATA+GGG + chr5_3:17140518-17140537 None:intergenic 45.0%
TTAGCGGCAGCTAGAAGAAT+AGG + chr5_3:17140519-17140538 None:intergenic 45.0%
! ATTCTTCTAGCTGCCGCTAA+TGG - chr5_3:17140519-17140538 Msa0802620:intron 45.0%
!!! GGGGGTTTTGGAGTAAAGAT+AGG + chr5_3:17140562-17140581 None:intergenic 45.0%
!! TCGAACACTTTGGAGTTGGT+GGG + chr5_3:17140582-17140601 None:intergenic 45.0%
CTCAAAGCGACATCTGATCA+TGG + chr5_3:17140754-17140773 None:intergenic 45.0%
TTCCCTTAACAACGTAGGGA+CGG + chr5_3:17140833-17140852 None:intergenic 45.0%
GGCCGAGAATTTATCAGGTA+AGG + chr5_3:17140905-17140924 None:intergenic 45.0%
ATTCTCGGCCTTAGTTGCAT+TGG - chr5_3:17140915-17140934 Msa0802620:intron 45.0%
!! GTGCCACTTGGAAAAGATGT+AGG + chr5_3:17140949-17140968 None:intergenic 45.0%
! TTTTCCAAGTGGCACCCAAT+TGG - chr5_3:17140954-17140973 Msa0802620:intron 45.0%
TTTCCAAGTGGCACCCAATT+GGG - chr5_3:17140955-17140974 Msa0802620:intron 45.0%
TCCATGAGCATGTGAGATTG+AGG - chr5_3:17141378-17141397 Msa0802620:CDS 45.0%
ACCTCAATCTCACATGCTCA+TGG + chr5_3:17141382-17141401 None:intergenic 45.0%
GAGATTATGGGTGGGGAATT+AGG - chr5_3:17141506-17141525 Msa0802620:intron 45.0%
GTGGGGAATTAGGCTTAAGA+GGG - chr5_3:17141516-17141535 Msa0802620:intron 45.0%
TGGGGAATTAGGCTTAAGAG+GGG - chr5_3:17141517-17141536 Msa0802620:intron 45.0%
AATCGTTCGGGAGAACAAGT+TGG - chr5_3:17141735-17141754 Msa0802620:intron 45.0%
! CCAAACTACCGATTACTAGG+GGG - chr5_3:17141789-17141808 Msa0802620:intron 45.0%
AGGATTGCTATATGCTGCGA+AGG - chr5_3:17142167-17142186 Msa0802620:intron 45.0%
GAAGGAAATGATGCATGACC+TGG - chr5_3:17142185-17142204 Msa0802620:intron 45.0%
ACCTGGATACGACAAAACGT+GGG - chr5_3:17142202-17142221 Msa0802620:intron 45.0%
GCAAAACTAAATCCAAGGGC+TGG - chr5_3:17142272-17142291 Msa0802620:intron 45.0%
TTGCATTGCAGATTTGAGCG+TGG - chr5_3:17142391-17142410 Msa0802620:intron 45.0%
TTGCAGATTTGAGCGTGGAA+AGG - chr5_3:17142396-17142415 Msa0802620:intron 45.0%
TCGGACGAAGTTCCCAATTT+CGG + chr5_3:17142447-17142466 None:intergenic 45.0%
AATTGGGAACTTCGTCCGAA+AGG - chr5_3:17142448-17142467 Msa0802620:intron 45.0%
ATTTGTTCCGCAGTCCAATG+TGG - chr5_3:17142512-17142531 Msa0802620:intron 45.0%
ATGGCTCAAAGCTTTCACGT+AGG - chr5_3:17142722-17142741 Msa0802620:intron 45.0%
CTCAAAGCTTTCACGTAGGT+TGG - chr5_3:17142726-17142745 Msa0802620:intron 45.0%
CCGTGGAGTTGCATATTTGT+TGG - chr5_3:17142937-17142956 Msa0802620:intron 45.0%
!! TTGGTGATGAATTAGGGGAG+CGG - chr5_3:17143179-17143198 Msa0802620:intron 45.0%
ACAGCGAAGTCGGCAAAATT+CGG - chr5_3:17143358-17143377 Msa0802620:intron 45.0%
! TTGCAGACAGTTTTGCACGT+TGG + chr5_3:17143625-17143644 None:intergenic 45.0%
!! GGTTCGATCGATTTGTTGAC+TGG + chr5_3:17143789-17143808 None:intergenic 45.0%
TGAAGGGACCTAATCAGTCT+TGG + chr5_3:17144025-17144044 None:intergenic 45.0%
AGTTACTTCTGCCGAAGTGT+TGG - chr5_3:17144111-17144130 Msa0802620:intron 45.0%
ATGTTGCATGCATCCCAACA+CGG - chr5_3:17144180-17144199 Msa0802620:intron 45.0%
ACATTCTGTCAATGGACGGA+AGG - chr5_3:17144329-17144348 Msa0802620:intron 45.0%
CTGCTATGACGATCAGATGA+AGG + chr5_3:17144420-17144439 None:intergenic 45.0%
TCTGATCGTCATAGCAGATC+CGG - chr5_3:17144423-17144442 Msa0802620:intron 45.0%
GTTTATGATACCACTGCAGG+CGG - chr5_3:17144975-17144994 Msa0802620:CDS 45.0%
CATCTTTCACTAGCTCCTCA+TGG + chr5_3:17145080-17145099 None:intergenic 45.0%
CATGAGGAGCTAGTGAAAGA+TGG - chr5_3:17145078-17145097 Msa0802620:CDS 45.0%
AAAGGCTGCAGCAAACATGA+TGG + chr5_3:17145163-17145182 None:intergenic 45.0%
GTAGTACCAATCATGGCACT+TGG - chr5_3:17145483-17145502 Msa0802620:CDS 45.0%
ATACTCCCAAGTGCCATGAT+TGG + chr5_3:17145492-17145511 None:intergenic 45.0%
!! TATTAATAAGTTATTTAAAA+AGG - chr5_3:17141639-17141658 Msa0802620:intron 5.0%
! GTGATGAGAGGTACGCCTAT+TGG - chr5_3:17140219-17140238 Msa0802620:CDS 50.0%
CTTCACGCTGCTGTAATTGC+TGG - chr5_3:17140297-17140316 Msa0802620:CDS 50.0%
GCTCTTGTTGCACGCTATAC+TGG - chr5_3:17140405-17140424 Msa0802620:CDS 50.0%
!!! TTTGGAGTTGGTGGGGGTTT+TGG + chr5_3:17140574-17140593 None:intergenic 50.0%
!! GAACACTTTGGAGTTGGTGG+GGG + chr5_3:17140580-17140599 None:intergenic 50.0%
!! CGAACACTTTGGAGTTGGTG+GGG + chr5_3:17140581-17140600 None:intergenic 50.0%
!! GTCGAACACTTTGGAGTTGG+TGG + chr5_3:17140583-17140602 None:intergenic 50.0%
TCTCCGTCCCTACGTTGTTA+AGG - chr5_3:17140827-17140846 Msa0802620:intron 50.0%
CTCCGTCCCTACGTTGTTAA+GGG - chr5_3:17140828-17140847 Msa0802620:intron 50.0%
TCAGGTAAGGATTGCTGGAG+AGG + chr5_3:17140892-17140911 None:intergenic 50.0%
!! AATCCCAATTGGGTGCCACT+TGG + chr5_3:17140961-17140980 None:intergenic 50.0%
GGCACCCAATTGGGATTTCT+AGG - chr5_3:17140964-17140983 Msa0802620:intron 50.0%
GGTGGGGAATTAGGCTTAAG+AGG - chr5_3:17141515-17141534 Msa0802620:intron 50.0%
CCCCCTAGTAATCGGTAGTT+TGG + chr5_3:17141792-17141811 None:intergenic 50.0%
! ACTAGGGGGACTCTTTTTCC+TGG - chr5_3:17141803-17141822 Msa0802620:intron 50.0%
! CTAGGGGGACTCTTTTTCCT+GGG - chr5_3:17141804-17141823 Msa0802620:intron 50.0%
GACCTGGATACGACAAAACG+TGG - chr5_3:17142201-17142220 Msa0802620:intron 50.0%
CCTTTCTGCCTATGCCACAT+TGG + chr5_3:17142529-17142548 None:intergenic 50.0%
CCAATGTGGCATAGGCAGAA+AGG - chr5_3:17142526-17142545 Msa0802620:intron 50.0%
CATGCCACTAACAGCGAAGT+CGG - chr5_3:17143348-17143367 Msa0802620:intron 50.0%
!! TTTGCCGACTTCGCTGTTAG+TGG + chr5_3:17143355-17143374 None:intergenic 50.0%
GCCTCTATGGCAGCTATCAA+CGG + chr5_3:17144259-17144278 None:intergenic 50.0%
TTGCACCTGGCAGCACATTT+AGG - chr5_3:17144393-17144412 Msa0802620:intron 50.0%
AAGGACCTAAATGTGCTGCC+AGG + chr5_3:17144401-17144420 None:intergenic 50.0%
TTGCATTTGCAGAGCAGCAC+CGG + chr5_3:17144445-17144464 None:intergenic 50.0%
GTTTCCACCTGGCACTGTAA+AGG + chr5_3:17145181-17145200 None:intergenic 50.0%
! GTTTTGTCGTCGTTTCCACC+TGG + chr5_3:17145192-17145211 None:intergenic 50.0%
GGTGGAAACGACGACAAAAC+TGG - chr5_3:17145192-17145211 Msa0802620:intron 50.0%
GCCGGTGCAGATCATGAACA+AGG - chr5_3:17140065-17140084 Msa0802620:CDS 55.0%
AGCGTGAAGAAGCGAAGACC+TGG + chr5_3:17140286-17140305 None:intergenic 55.0%
! GCCCACGTTTTGTCGTATCC+AGG + chr5_3:17142206-17142225 None:intergenic 55.0%
TCCGCAGTCCAATGTGGCAT+AGG - chr5_3:17142518-17142537 Msa0802620:intron 55.0%
GCCTATGCCACATTGGACTG+CGG + chr5_3:17142522-17142541 None:intergenic 55.0%
TTGGCGCTTCTGCAAACTGC+TGG - chr5_3:17142745-17142764 Msa0802620:intron 55.0%
!! GCCGTTGATAGCTGCCATAG+AGG - chr5_3:17144255-17144274 Msa0802620:intron 55.0%
ACTTTCTCAACCGCCTGCAG+TGG + chr5_3:17144988-17145007 None:intergenic 55.0%
GGCTGCAGCAAACATGATGG+TGG + chr5_3:17145160-17145179 None:intergenic 55.0%
GACGAATGCACACCAGCCCT+TGG + chr5_3:17142287-17142306 None:intergenic 60.0%
GCTGCAGCCTTTACAGTGCC+AGG - chr5_3:17145171-17145190 Msa0802620:intron 60.0%
GCAGCCTTTACAGTGCCAGG+TGG - chr5_3:17145174-17145193 Msa0802620:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 17139864 17145605 17139864 ID=Msa0802620;Name=Msa0802620
chr5_3 mRNA 17139864 17145605 17139864 ID=Msa0802620-mRNA-1;Parent=Msa0802620;Name=Msa0802620-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0|0|1|0.42|0.37|8|0|617
chr5_3 exon 17145383 17145605 17145383 ID=Msa0802620-mRNA-1:exon:7147;Parent=Msa0802620-mRNA-1
chr5_3 exon 17145261 17145297 17145261 ID=Msa0802620-mRNA-1:exon:7146;Parent=Msa0802620-mRNA-1
chr5_3 exon 17145017 17145182 17145017 ID=Msa0802620-mRNA-1:exon:7145;Parent=Msa0802620-mRNA-1
chr5_3 exon 17144806 17145001 17144806 ID=Msa0802620-mRNA-1:exon:7144;Parent=Msa0802620-mRNA-1
chr5_3 exon 17144466 17144708 17144466 ID=Msa0802620-mRNA-1:exon:7143;Parent=Msa0802620-mRNA-1
chr5_3 exon 17141258 17141414 17141258 ID=Msa0802620-mRNA-1:exon:7142;Parent=Msa0802620-mRNA-1
chr5_3 exon 17140984 17141203 17140984 ID=Msa0802620-mRNA-1:exon:7141;Parent=Msa0802620-mRNA-1
chr5_3 exon 17139864 17140475 17139864 ID=Msa0802620-mRNA-1:exon:7140;Parent=Msa0802620-mRNA-1
chr5_3 CDS 17145383 17145605 17145383 ID=Msa0802620-mRNA-1:cds;Parent=Msa0802620-mRNA-1
chr5_3 CDS 17145261 17145297 17145261 ID=Msa0802620-mRNA-1:cds;Parent=Msa0802620-mRNA-1
chr5_3 CDS 17145017 17145182 17145017 ID=Msa0802620-mRNA-1:cds;Parent=Msa0802620-mRNA-1
chr5_3 CDS 17144806 17145001 17144806 ID=Msa0802620-mRNA-1:cds;Parent=Msa0802620-mRNA-1
chr5_3 CDS 17144466 17144708 17144466 ID=Msa0802620-mRNA-1:cds;Parent=Msa0802620-mRNA-1
chr5_3 CDS 17141258 17141414 17141258 ID=Msa0802620-mRNA-1:cds;Parent=Msa0802620-mRNA-1
chr5_3 CDS 17140984 17141203 17140984 ID=Msa0802620-mRNA-1:cds;Parent=Msa0802620-mRNA-1
chr5_3 CDS 17139864 17140475 17139864 ID=Msa0802620-mRNA-1:cds;Parent=Msa0802620-mRNA-1
Gene Sequence

>Msa0802620

ATGTTAGGGCAAGGCCTTTTAGGCGTTATCCAGACTGTTTCAGAATTCGAAACTGATGCTTCATGGAAAATAAAGGATGTGAAAGCTTTGCATATCATTCAACTATCATGTGGACGAGAGATTGCTGATGAGATTAGTCATTTTAAAACAGCCAAAAGCGCCTGGAATCATTTAGGCTCATTATATGGCAAAGATTTAACAGCCGGTGCAGATCATGAACAAGATGTGGATGATAGCCACTCTCCAAAGAATAAAGAATTGTCTTCGCTTCTTCACGCTGCTGTAATTGCTGGAAATGTGGAAAATGTGGAATTGTTGGTGAAAGTTGGGAAAGACACGTTAATATGCATGCAAGACGAACACGGTGACACAGCTCTTGCTCTTGTTGCACGCTATACTGGAAATACTGATATAGCAAAGTGCATGGGACTCCCAGAAACGTTGCTAGAAAAGGAGAACAATGACAATGTAATCCCTATTCTTCTAGCTGCCGCTAATGGACACAAAGAATTGACTACCTATCTTTACTCCAAAACCCCCACCAACTCCAAAGTGTTCGACAAATCAAATTCACAGAATCGAGTTTTGCTTCTTTCACTATGTATCACTGCTGAAATATTTGATGTCGCTTTGAGATTACTCAGACGTTTCAAAGATCTGCCCGAGCAATCATTATCAATATATAACTTCTCCGTCCCTACGTTGTTAAGGGAATCATTATCACTACCTAGCAAAATCTCAGAATCAGATCCTCTCCAGCAATCCTTACCTGATAAATTCTCGGCCTTAGTTGCATTGGCAAAAATGCCTACATCTTTTCCAAGTGGCACCCAATTGGGATTTCTAGGCCAAATTATTTATGAAAGAATCAGGAAGATATATGATCAGAAATACACACATTATGAAGTTATAGGAATATTGAGTTACTTCTGCCGAAGTGTTGGAAAATTTAATAGTTCAAAGCTCAAAGAGGCTTCCGCGTATGAAGCAATGTTGCATGCATCCCAACACGGAATAATCGACTGCCATAGAGGCATATTTTCGTATGCAATCTTGCATCGCAAACAAAATGTGTTTCAACTCATACATTCTGTCAATGGACGGAAGGAGATACTTAGACATCGTATAGACTCGTTTGGCAATAATTTGTTGCACCTGGCAGCACATTTAGGTCCTTCATCTGATCGTCATAGCAGATCCGGTGCTGCTCTGCAAATGCAAAGAGAGATTCAATGGTTTAAGGCGGTTGAGAAAGTTTTACATCCCAAGTTTAAGGAAGCCGAAAATGATGATGGTAAGAAGCCTTATGAGATATTCATTGAAAGCCATGAGGAGCTAGTGAAAGATGGAGAGAAATGGGCAAAAGACACAGCAACATCTTATACAATTGTAGGTACTCTCATCACCACCATCATGTTTGCTGCAGCCTTTACAGTGCCAGGTGGAAACGACGACAAAACTGGTTTGCCCATCTTCTTACATGACAACATATTCACTGCATTTCTCATGGCAGACGCAGTATCTCTCTTCGCATCTGCGACTTCCGTCTTGATTTTCATTGGTATACTCACATCGCGTTATGCTGAGACAGACTTTCTCAAGAGCTTACCTTGGAAGTTATTGTTTGGTCTTTTGCTCCTTTTTCTCTCTGTTTGTTCTATGATAGTTGCATTTAGCGCTGCCATTATCGACATGATCTTAAAGGGATATGAAACCCATAAGTGGTTCATTGTAGTACCAATCATGGCACTTGGGAGTATTCCGATTATCGTTCTTGTAATATCACAGGTGAGCTTCATGTATGAAATCTTCCGCTCAACATGGAAAAATCCCATCCGTTCAATAAACAAATGA
Protein sequence

>Msa0802620

MLGQGLLGVIQTVSEFETDASWKIKDVKALHIIQLSCGREIADEISHFKTAKSAWNHLGSLYGKDLTAGADHEQDVDDSHSPKNKELSSLLHAAVIAGNVENVELLVKVGKDTLICMQDEHGDTALALVARYTGNTDIAKCMGLPETLLEKENNDNVIPILLAAANGHKELTTYLYSKTPTNSKVFDKSNSQNRVLLLSLCITAEIFDVALRLLRRFKDLPEQSLSIYNFSVPTLLRESLSLPSKISESDPLQQSLPDKFSALVALAKMPTSFPSGTQLGFLGQIIYERIRKIYDQKYTHYEVIGILSYFCRSVGKFNSSKLKEASAYEAMLHASQHGIIDCHRGIFSYAILHRKQNVFQLIHSVNGRKEILRHRIDSFGNNLLHLAAHLGPSSDRHSRSGAALQMQREIQWFKAVEKVLHPKFKEAENDDGKKPYEIFIESHEELVKDGEKWAKDTATSYTIVGTLITTIMFAAAFTVPGGNDDKTGLPIFLHDNIFTAFLMADAVSLFASATSVLIFIGILTSRYAETDFLKSLPWKLLFGLLLLFLSVCSMIVAFSAAIIDMILKGYETHKWFIVVPIMALGSIPIIVLVISQVSFMYEIFRSTWKNPIRSINK*