AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1152180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1152180 MtrunA17_Chr7g0242161 92.273 220 16 1 1 219 1 220 1.77e-147 409
Msa1152180 MtrunA17_Chr7g0242191 55.721 201 80 4 22 219 26 220 1.47e-65 201
Msa1152180 MtrunA17_Chr7g0242171 56.075 107 42 2 1 102 1 107 4.84e-29 105
Msa1152180 MtrunA17_Chr3g0108171 27.742 155 110 1 63 217 1813 1965 3.35e-13 68.2
Msa1152180 MtrunA17_Chr3g0107261 25.806 155 113 1 63 217 245 397 6.60e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGTACCAATAATTGTTTC+TGG 0.192780 7_4:-37422015 None:intergenic
ATGCGACTCTAAATATTAAA+AGG 0.195749 7_4:-37423826 None:intergenic
AATTAGTATACTTGGCTTCT+TGG 0.241814 7_4:-37423651 None:intergenic
CAGGTTTCGCAGCTCTTCTT+TGG 0.265330 7_4:-37423623 None:intergenic
GTGTGTTTCTAACCGTCTTC+TGG 0.296829 7_4:-37421959 None:intergenic
TAATGTAGTCATCAAGTCTA+AGG 0.337618 7_4:-37423494 None:intergenic
CAAGCCCCAGAAACAATTAT+TGG 0.339566 7_4:+37422009 Msa1152180:CDS
CTCGATATTATTAATATGTA+TGG 0.344554 7_4:+37423538 Msa1152180:CDS
CTATGGACTGCGTTTCTAAT+AGG 0.356507 7_4:+37423764 Msa1152180:CDS
TATACTAATTCGAAACTTGT+TGG 0.366713 7_4:+37423664 Msa1152180:CDS
CTGAGGAGTCGCGCATCATT+AGG 0.369116 7_4:-37423352 None:intergenic
ACTTGGCTTCTTGGTCAGTC+AGG 0.405311 7_4:-37423642 None:intergenic
ACGTACCAATAATTGTTTCT+GGG 0.415337 7_4:-37422014 None:intergenic
TTCGAAACTTGTTGGAGAGT+TGG 0.417533 7_4:+37423672 Msa1152180:CDS
TAATAGGAAGAAGCAAGTTA+AGG 0.433078 7_4:+37423780 Msa1152180:CDS
CGCATCATTAGGAGGGAAAT+CGG 0.436259 7_4:-37423341 None:intergenic
AAGTTTCGAATTAGTATACT+TGG 0.462570 7_4:-37423659 None:intergenic
TGCGACTCTAAATATTAAAA+GGG 0.473619 7_4:-37423825 None:intergenic
GAAACTTGTTGGAGAGTTGG+AGG 0.505875 7_4:+37423675 Msa1152180:CDS
ATTAATATGTATGGCTTCAG+AGG 0.516211 7_4:+37423547 Msa1152180:CDS
AAAACATTACGCCGAGGTGC+AGG 0.528899 7_4:-37423301 None:intergenic
TCGCAAGAGCTTGAGGAAGT+TGG 0.534058 7_4:-37423461 None:intergenic
AGCTCCACGTCTTATGTCAA+GGG 0.547099 7_4:-37423425 None:intergenic
AAGCTCCACGTCTTATGTCA+AGG 0.560627 7_4:-37423426 None:intergenic
CGTACCAATAATTGTTTCTG+GGG 0.566692 7_4:-37422013 None:intergenic
TTCTTTGGCGATATCAAGAG+TGG 0.567082 7_4:-37423608 None:intergenic
TAATGATGCGCGACTCCTCA+GGG 0.567168 7_4:+37423354 Msa1152180:CDS
AGGAGTCGCGCATCATTAGG+AGG 0.568050 7_4:-37423349 None:intergenic
TCTTTACAGGTCCTGCACCT+CGG 0.572942 7_4:+37423290 Msa1152180:intron
TTAAAATCACATGTTGCTGA+AGG 0.586212 7_4:+37423514 Msa1152180:CDS
ACTTGTTGGAGAGTTGGAGG+AGG 0.591965 7_4:+37423678 Msa1152180:CDS
ATGTTCATCTCGACCATCGG+TGG 0.593884 7_4:-37421917 None:intergenic
TAGCGACGAGAAACTAGCTA+TGG 0.597878 7_4:+37423747 Msa1152180:CDS
TTGGCGATATCAAGAGTGGA+GGG 0.601865 7_4:-37423604 None:intergenic
ATGATGTTCATCTCGACCAT+CGG 0.604506 7_4:-37421920 None:intergenic
AGTGTGATCGCAAGAGCTTG+AGG 0.610597 7_4:-37423468 None:intergenic
TTTGGCGATATCAAGAGTGG+AGG 0.621011 7_4:-37423605 None:intergenic
TGTATGGCTTCAGAGGTGAA+TGG 0.635609 7_4:+37423554 Msa1152180:CDS
TGTTCATCTCGACCATCGGT+GGG 0.646572 7_4:-37421916 None:intergenic
CATCCCCTTGACATAAGACG+TGG 0.651438 7_4:+37423421 Msa1152180:CDS
AAATCGGCAACAACAGAGCG+TGG 0.663909 7_4:-37423325 None:intergenic
GCTCCACGTCTTATGTCAAG+GGG 0.665557 7_4:-37423424 None:intergenic
CACAACGAGCTTCAGCGCAG+AGG 0.671568 7_4:+37421979 Msa1152180:CDS
GGAGTCGCGCATCATTAGGA+GGG 0.672305 7_4:-37423348 None:intergenic
ACAGTAGAAGAACCAGAAGA+CGG 0.678706 7_4:+37421947 Msa1152180:CDS
CGTGGTAAAACATTACGCCG+AGG 0.728823 7_4:-37423307 None:intergenic
GACGAGCAGAAAATTCCCTG+AGG 0.767412 7_4:-37423369 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAAACATAAAAATAAA+AGG + chr7_4:37422721-37422740 Msa1152180:intron 10.0%
!! TGAAAAAACATAAAAATAAA+AGG + chr7_4:37422721-37422740 Msa1152180:intron 10.0%
!!! AATTTTTTACTATTATACGA+GGG + chr7_4:37422212-37422231 Msa1152180:intron 15.0%
!!! TAGATTTTGAAAAAGTTATT+GGG + chr7_4:37422435-37422454 Msa1152180:intron 15.0%
!!! AAAAAAATGATTTTGTGAAA+AGG - chr7_4:37422574-37422593 None:intergenic 15.0%
!!! ATGTTTTTTCAGATTATTTA+GGG - chr7_4:37422712-37422731 None:intergenic 15.0%
!!! TATGTTTTTTCAGATTATTT+AGG - chr7_4:37422713-37422732 None:intergenic 15.0%
!! AAAAACATAAAAATAAAAGG+AGG + chr7_4:37422724-37422743 Msa1152180:intron 15.0%
!!! TTTTAGTTTTTGTTTTTTGA+AGG - chr7_4:37422890-37422909 None:intergenic 15.0%
!! TATTATTATTATTTGAGCAA+AGG - chr7_4:37423030-37423049 None:intergenic 15.0%
!!! AATTTTTTACTATTATACGA+GGG + chr7_4:37422212-37422231 Msa1152180:intron 15.0%
!!! TAGATTTTGAAAAAGTTATT+GGG + chr7_4:37422435-37422454 Msa1152180:intron 15.0%
!!! AAAAAAATGATTTTGTGAAA+AGG - chr7_4:37422574-37422593 None:intergenic 15.0%
!!! ATGTTTTTTCAGATTATTTA+GGG - chr7_4:37422712-37422731 None:intergenic 15.0%
!!! TATGTTTTTTCAGATTATTT+AGG - chr7_4:37422713-37422732 None:intergenic 15.0%
!! AAAAACATAAAAATAAAAGG+AGG + chr7_4:37422724-37422743 Msa1152180:intron 15.0%
!!! TTTTAGTTTTTGTTTTTTGA+AGG - chr7_4:37422890-37422909 None:intergenic 15.0%
!! TATTATTATTATTTGAGCAA+AGG - chr7_4:37423030-37423049 None:intergenic 15.0%
!! GACTTAAAAAACAATGTTAT+AGG + chr7_4:37422128-37422147 Msa1152180:intron 20.0%
!! CTCGTATAATAGTAAAAAAT+TGG - chr7_4:37422213-37422232 None:intergenic 20.0%
!!! CAATTTTTTACTATTATACG+AGG + chr7_4:37422211-37422230 Msa1152180:intron 20.0%
!! GACTTAAAAAACAATGTTAT+TGG + chr7_4:37422128-37422147 Msa1152180:intron 20.0%
!! AAGCAAGAAACTTAAAAAAT+TGG - chr7_4:37422405-37422424 None:intergenic 20.0%
!!! GTAGATTTTGAAAAAGTTAT+TGG + chr7_4:37422434-37422453 Msa1152180:intron 20.0%
!!! TGGGAAGTTTTTTTAATTTA+TGG + chr7_4:37422454-37422473 Msa1152180:intron 20.0%
!!! AAAAGTTCCTACTTTTTTTT+TGG + chr7_4:37422908-37422927 Msa1152180:intron 20.0%
!! TTATTAGCCAAAAAAAAAGT+AGG - chr7_4:37422918-37422937 None:intergenic 20.0%
!! GGTTTATAAAATAAAGTAAG+AGG - chr7_4:37422962-37422981 None:intergenic 20.0%
!!! ACTTATTATTTTCTCTCATA+TGG - chr7_4:37423001-37423020 None:intergenic 20.0%
!! CTCGATATTATTAATATGTA+TGG + chr7_4:37423538-37423557 Msa1152180:CDS 20.0%
!! GACTTAAAAAACAATGTTAT+AGG + chr7_4:37422128-37422147 Msa1152180:intron 20.0%
!! CTCGTATAATAGTAAAAAAT+TGG - chr7_4:37422213-37422232 None:intergenic 20.0%
!!! CAATTTTTTACTATTATACG+AGG + chr7_4:37422211-37422230 Msa1152180:intron 20.0%
!! GACTTAAAAAACAATGTTAT+TGG + chr7_4:37422128-37422147 Msa1152180:intron 20.0%
!! AAGCAAGAAACTTAAAAAAT+TGG - chr7_4:37422405-37422424 None:intergenic 20.0%
!!! GTAGATTTTGAAAAAGTTAT+TGG + chr7_4:37422434-37422453 Msa1152180:intron 20.0%
!!! TGGGAAGTTTTTTTAATTTA+TGG + chr7_4:37422454-37422473 Msa1152180:intron 20.0%
!!! AAAAGTTCCTACTTTTTTTT+TGG + chr7_4:37422908-37422927 Msa1152180:intron 20.0%
!! TTATTAGCCAAAAAAAAAGT+AGG - chr7_4:37422918-37422937 None:intergenic 20.0%
!! GGTTTATAAAATAAAGTAAG+AGG - chr7_4:37422962-37422981 None:intergenic 20.0%
!!! ACTTATTATTTTCTCTCATA+TGG - chr7_4:37423001-37423020 None:intergenic 20.0%
!! CTCGATATTATTAATATGTA+TGG + chr7_4:37423538-37423557 Msa1152180:CDS 20.0%
! ATACTTAAGTGTTATAGCTT+CGG - chr7_4:37422250-37422269 None:intergenic 25.0%
!! ATTTTGTGAAAAGGTAATAC+GGG - chr7_4:37422565-37422584 None:intergenic 25.0%
!! GATTTTGTGAAAAGGTAATA+CGG - chr7_4:37422566-37422585 None:intergenic 25.0%
! TATGGTTGTTATGCTATATT+TGG - chr7_4:37422983-37423002 None:intergenic 25.0%
!!! AGTTGATATGTTTTCTTTAC+AGG + chr7_4:37423277-37423296 Msa1152180:intron 25.0%
! AAGTTTCGAATTAGTATACT+TGG - chr7_4:37423662-37423681 None:intergenic 25.0%
! TATACTAATTCGAAACTTGT+TGG + chr7_4:37423664-37423683 Msa1152180:CDS 25.0%
! ATACTTAAGTGTTATAGCTT+CGG - chr7_4:37422250-37422269 None:intergenic 25.0%
!! ATTTTGTGAAAAGGTAATAC+GGG - chr7_4:37422565-37422584 None:intergenic 25.0%
!! GATTTTGTGAAAAGGTAATA+CGG - chr7_4:37422566-37422585 None:intergenic 25.0%
! TATGGTTGTTATGCTATATT+TGG - chr7_4:37422983-37423002 None:intergenic 25.0%
!!! AGTTGATATGTTTTCTTTAC+AGG + chr7_4:37423277-37423296 Msa1152180:intron 25.0%
! AAGTTTCGAATTAGTATACT+TGG - chr7_4:37423662-37423681 None:intergenic 25.0%
! TATACTAATTCGAAACTTGT+TGG + chr7_4:37423664-37423683 Msa1152180:CDS 25.0%
! ACGTACCAATAATTGTTTCT+GGG - chr7_4:37422017-37422036 None:intergenic 30.0%
GTTGTATTGTGTTTACTTTC+TGG - chr7_4:37422631-37422650 None:intergenic 30.0%
! TGCTTTGAACTATCCATAAA+AGG - chr7_4:37422758-37422777 None:intergenic 30.0%
AATCCACTAGATAGTATTGT+TGG + chr7_4:37422781-37422800 Msa1152180:intron 30.0%
AATCCAACAATACTATCTAG+TGG - chr7_4:37422787-37422806 None:intergenic 30.0%
! AGGAAGTTTTCTTAGTTGTA+GGG - chr7_4:37422870-37422889 None:intergenic 30.0%
! AAGGAAGTTTTCTTAGTTGT+AGG - chr7_4:37422871-37422890 None:intergenic 30.0%
TAATGTAGTCATCAAGTCTA+AGG - chr7_4:37423497-37423516 None:intergenic 30.0%
TTAAAATCACATGTTGCTGA+AGG + chr7_4:37423514-37423533 Msa1152180:CDS 30.0%
ATTAATATGTATGGCTTCAG+AGG + chr7_4:37423547-37423566 Msa1152180:CDS 30.0%
AATTAGTATACTTGGCTTCT+TGG - chr7_4:37423654-37423673 None:intergenic 30.0%
TAATAGGAAGAAGCAAGTTA+AGG + chr7_4:37423780-37423799 Msa1152180:CDS 30.0%
! ACGTACCAATAATTGTTTCT+GGG - chr7_4:37422017-37422036 None:intergenic 30.0%
GTTGTATTGTGTTTACTTTC+TGG - chr7_4:37422631-37422650 None:intergenic 30.0%
! TGCTTTGAACTATCCATAAA+AGG - chr7_4:37422758-37422777 None:intergenic 30.0%
AATCCACTAGATAGTATTGT+TGG + chr7_4:37422781-37422800 Msa1152180:intron 30.0%
AATCCAACAATACTATCTAG+TGG - chr7_4:37422787-37422806 None:intergenic 30.0%
! AGGAAGTTTTCTTAGTTGTA+GGG - chr7_4:37422870-37422889 None:intergenic 30.0%
! AAGGAAGTTTTCTTAGTTGT+AGG - chr7_4:37422871-37422890 None:intergenic 30.0%
TAATGTAGTCATCAAGTCTA+AGG - chr7_4:37423497-37423516 None:intergenic 30.0%
TTAAAATCACATGTTGCTGA+AGG + chr7_4:37423514-37423533 Msa1152180:CDS 30.0%
ATTAATATGTATGGCTTCAG+AGG + chr7_4:37423547-37423566 Msa1152180:CDS 30.0%
AATTAGTATACTTGGCTTCT+TGG - chr7_4:37423654-37423673 None:intergenic 30.0%
TAATAGGAAGAAGCAAGTTA+AGG + chr7_4:37423780-37423799 Msa1152180:CDS 30.0%
!! CGTACCAATAATTGTTTCTG+GGG - chr7_4:37422016-37422035 None:intergenic 35.0%
CACGTACCAATAATTGTTTC+TGG - chr7_4:37422018-37422037 None:intergenic 35.0%
CCTAAGAACAACATCTCATT+TGG - chr7_4:37422095-37422114 None:intergenic 35.0%
CCAAATGAGATGTTGTTCTT+AGG + chr7_4:37422092-37422111 Msa1152180:intron 35.0%
!! GTAATACGGGTAGTTTGTTT+GGG - chr7_4:37422552-37422571 None:intergenic 35.0%
CTTAGTTGTAGGGTTCAAAT+AGG - chr7_4:37422860-37422879 None:intergenic 35.0%
!! CGTACCAATAATTGTTTCTG+GGG - chr7_4:37422016-37422035 None:intergenic 35.0%
CACGTACCAATAATTGTTTC+TGG - chr7_4:37422018-37422037 None:intergenic 35.0%
CCTAAGAACAACATCTCATT+TGG - chr7_4:37422095-37422114 None:intergenic 35.0%
CCAAATGAGATGTTGTTCTT+AGG + chr7_4:37422092-37422111 Msa1152180:intron 35.0%
!! GTAATACGGGTAGTTTGTTT+GGG - chr7_4:37422552-37422571 None:intergenic 35.0%
CTTAGTTGTAGGGTTCAAAT+AGG - chr7_4:37422860-37422879 None:intergenic 35.0%
ATGATGTTCATCTCGACCAT+CGG - chr7_4:37421923-37421942 None:intergenic 40.0%
ACAGTAGAAGAACCAGAAGA+CGG + chr7_4:37421947-37421966 Msa1152180:CDS 40.0%
CAAGCCCCAGAAACAATTAT+TGG + chr7_4:37422009-37422028 Msa1152180:CDS 40.0%
!! GGTAATACGGGTAGTTTGTT+TGG - chr7_4:37422553-37422572 None:intergenic 40.0%
! GGAGGCAATCATTCCTTTTA+TGG + chr7_4:37422742-37422761 Msa1152180:intron 40.0%
GTAGGGTTCAAATAGGTAGA+TGG - chr7_4:37422853-37422872 None:intergenic 40.0%
TTCTTTGGCGATATCAAGAG+TGG - chr7_4:37423611-37423630 None:intergenic 40.0%
!! TTCGAAACTTGTTGGAGAGT+TGG + chr7_4:37423672-37423691 Msa1152180:CDS 40.0%
! CTATGGACTGCGTTTCTAAT+AGG + chr7_4:37423764-37423783 Msa1152180:CDS 40.0%
ATGATGTTCATCTCGACCAT+CGG - chr7_4:37421923-37421942 None:intergenic 40.0%
ACAGTAGAAGAACCAGAAGA+CGG + chr7_4:37421947-37421966 Msa1152180:CDS 40.0%
CAAGCCCCAGAAACAATTAT+TGG + chr7_4:37422009-37422028 Msa1152180:CDS 40.0%
!! GGTAATACGGGTAGTTTGTT+TGG - chr7_4:37422553-37422572 None:intergenic 40.0%
! GGAGGCAATCATTCCTTTTA+TGG + chr7_4:37422742-37422761 Msa1152180:intron 40.0%
GTAGGGTTCAAATAGGTAGA+TGG - chr7_4:37422853-37422872 None:intergenic 40.0%
TTCTTTGGCGATATCAAGAG+TGG - chr7_4:37423611-37423630 None:intergenic 40.0%
!! TTCGAAACTTGTTGGAGAGT+TGG + chr7_4:37423672-37423691 Msa1152180:CDS 40.0%
! CTATGGACTGCGTTTCTAAT+AGG + chr7_4:37423764-37423783 Msa1152180:CDS 40.0%
! GTGTGTTTCTAACCGTCTTC+TGG - chr7_4:37421962-37421981 None:intergenic 45.0%
GGGTTCAAATAGGTAGATGG+AGG - chr7_4:37422850-37422869 None:intergenic 45.0%
CGCATCATTAGGAGGGAAAT+CGG - chr7_4:37423344-37423363 None:intergenic 45.0%
! GAATTTTCTGCTCGTCATGC+TGG + chr7_4:37423376-37423395 Msa1152180:CDS 45.0%
AGCTCCACGTCTTATGTCAA+GGG - chr7_4:37423428-37423447 None:intergenic 45.0%
AAGCTCCACGTCTTATGTCA+AGG - chr7_4:37423429-37423448 None:intergenic 45.0%
TGTATGGCTTCAGAGGTGAA+TGG + chr7_4:37423554-37423573 Msa1152180:CDS 45.0%
TTGGCGATATCAAGAGTGGA+GGG - chr7_4:37423607-37423626 None:intergenic 45.0%
TTTGGCGATATCAAGAGTGG+AGG - chr7_4:37423608-37423627 None:intergenic 45.0%
!! GAAACTTGTTGGAGAGTTGG+AGG + chr7_4:37423675-37423694 Msa1152180:CDS 45.0%
TAGCGACGAGAAACTAGCTA+TGG + chr7_4:37423747-37423766 Msa1152180:CDS 45.0%
! GTGTGTTTCTAACCGTCTTC+TGG - chr7_4:37421962-37421981 None:intergenic 45.0%
GGGTTCAAATAGGTAGATGG+AGG - chr7_4:37422850-37422869 None:intergenic 45.0%
CGCATCATTAGGAGGGAAAT+CGG - chr7_4:37423344-37423363 None:intergenic 45.0%
! GAATTTTCTGCTCGTCATGC+TGG + chr7_4:37423376-37423395 Msa1152180:CDS 45.0%
AGCTCCACGTCTTATGTCAA+GGG - chr7_4:37423428-37423447 None:intergenic 45.0%
AAGCTCCACGTCTTATGTCA+AGG - chr7_4:37423429-37423448 None:intergenic 45.0%
TGTATGGCTTCAGAGGTGAA+TGG + chr7_4:37423554-37423573 Msa1152180:CDS 45.0%
TTGGCGATATCAAGAGTGGA+GGG - chr7_4:37423607-37423626 None:intergenic 45.0%
TTTGGCGATATCAAGAGTGG+AGG - chr7_4:37423608-37423627 None:intergenic 45.0%
!! GAAACTTGTTGGAGAGTTGG+AGG + chr7_4:37423675-37423694 Msa1152180:CDS 45.0%
TAGCGACGAGAAACTAGCTA+TGG + chr7_4:37423747-37423766 Msa1152180:CDS 45.0%
!! ATAATAATAATAAGTATTTA+TGG + chr7_4:37423044-37423063 Msa1152180:intron 5.0%
!!! TTTATTTTATTTTGAAAAAA+TGG + chr7_4:37423150-37423169 Msa1152180:intron 5.0%
!!! TTATTTTTATTTTGAAATAA+TGG + chr7_4:37423232-37423251 Msa1152180:intron 5.0%
!! ATAATAATAATAAGTATTTA+TGG + chr7_4:37423044-37423063 Msa1152180:intron 5.0%
!!! TTTATTTTATTTTGAAAAAA+TGG + chr7_4:37423150-37423169 Msa1152180:intron 5.0%
!!! TTATTTTTATTTTGAAATAA+TGG + chr7_4:37423232-37423251 Msa1152180:intron 5.0%
TGTTCATCTCGACCATCGGT+GGG - chr7_4:37421919-37421938 None:intergenic 50.0%
ATGTTCATCTCGACCATCGG+TGG - chr7_4:37421920-37421939 None:intergenic 50.0%
TCTTTACAGGTCCTGCACCT+CGG + chr7_4:37423290-37423309 Msa1152180:intron 50.0%
AAAACATTACGCCGAGGTGC+AGG - chr7_4:37423304-37423323 None:intergenic 50.0%
CGTGGTAAAACATTACGCCG+AGG - chr7_4:37423310-37423329 None:intergenic 50.0%
AAATCGGCAACAACAGAGCG+TGG - chr7_4:37423328-37423347 None:intergenic 50.0%
TAATGATGCGCGACTCCTCA+GGG + chr7_4:37423354-37423373 Msa1152180:CDS 50.0%
GACGAGCAGAAAATTCCCTG+AGG - chr7_4:37423372-37423391 None:intergenic 50.0%
CATCCCCTTGACATAAGACG+TGG + chr7_4:37423421-37423440 Msa1152180:CDS 50.0%
GCTCCACGTCTTATGTCAAG+GGG - chr7_4:37423427-37423446 None:intergenic 50.0%
TCGCAAGAGCTTGAGGAAGT+TGG - chr7_4:37423464-37423483 None:intergenic 50.0%
AGTGTGATCGCAAGAGCTTG+AGG - chr7_4:37423471-37423490 None:intergenic 50.0%
CAGGTTTCGCAGCTCTTCTT+TGG - chr7_4:37423626-37423645 None:intergenic 50.0%
ACTTGGCTTCTTGGTCAGTC+AGG - chr7_4:37423645-37423664 None:intergenic 50.0%
! ACTTGTTGGAGAGTTGGAGG+AGG + chr7_4:37423678-37423697 Msa1152180:CDS 50.0%
TGTTCATCTCGACCATCGGT+GGG - chr7_4:37421919-37421938 None:intergenic 50.0%
ATGTTCATCTCGACCATCGG+TGG - chr7_4:37421920-37421939 None:intergenic 50.0%
TCTTTACAGGTCCTGCACCT+CGG + chr7_4:37423290-37423309 Msa1152180:intron 50.0%
AAAACATTACGCCGAGGTGC+AGG - chr7_4:37423304-37423323 None:intergenic 50.0%
CGTGGTAAAACATTACGCCG+AGG - chr7_4:37423310-37423329 None:intergenic 50.0%
AAATCGGCAACAACAGAGCG+TGG - chr7_4:37423328-37423347 None:intergenic 50.0%
TAATGATGCGCGACTCCTCA+GGG + chr7_4:37423354-37423373 Msa1152180:CDS 50.0%
GACGAGCAGAAAATTCCCTG+AGG - chr7_4:37423372-37423391 None:intergenic 50.0%
CATCCCCTTGACATAAGACG+TGG + chr7_4:37423421-37423440 Msa1152180:CDS 50.0%
GCTCCACGTCTTATGTCAAG+GGG - chr7_4:37423427-37423446 None:intergenic 50.0%
TCGCAAGAGCTTGAGGAAGT+TGG - chr7_4:37423464-37423483 None:intergenic 50.0%
AGTGTGATCGCAAGAGCTTG+AGG - chr7_4:37423471-37423490 None:intergenic 50.0%
CAGGTTTCGCAGCTCTTCTT+TGG - chr7_4:37423626-37423645 None:intergenic 50.0%
ACTTGGCTTCTTGGTCAGTC+AGG - chr7_4:37423645-37423664 None:intergenic 50.0%
! ACTTGTTGGAGAGTTGGAGG+AGG + chr7_4:37423678-37423697 Msa1152180:CDS 50.0%
GGAGTCGCGCATCATTAGGA+GGG - chr7_4:37423351-37423370 None:intergenic 55.0%
AGGAGTCGCGCATCATTAGG+AGG - chr7_4:37423352-37423371 None:intergenic 55.0%
CTGAGGAGTCGCGCATCATT+AGG - chr7_4:37423355-37423374 None:intergenic 55.0%
CTAATGATGCGCGACTCCTC+AGG + chr7_4:37423353-37423372 Msa1152180:CDS 55.0%
GGAGTCGCGCATCATTAGGA+GGG - chr7_4:37423351-37423370 None:intergenic 55.0%
AGGAGTCGCGCATCATTAGG+AGG - chr7_4:37423352-37423371 None:intergenic 55.0%
CTGAGGAGTCGCGCATCATT+AGG - chr7_4:37423355-37423374 None:intergenic 55.0%
CTAATGATGCGCGACTCCTC+AGG + chr7_4:37423353-37423372 Msa1152180:CDS 55.0%
CACAACGAGCTTCAGCGCAG+AGG + chr7_4:37421979-37421998 Msa1152180:CDS 60.0%
CACAACGAGCTTCAGCGCAG+AGG + chr7_4:37421979-37421998 Msa1152180:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 37421913 37423840 37421913 ID=Msa1152180;Name=Msa1152180
chr7_4 mRNA 37421913 37423840 37421913 ID=Msa1152180-mRNA-1;Parent=Msa1152180;Name=Msa1152180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|219
chr7_4 exon 37421913 37422030 37421913 ID=Msa1152180-mRNA-1:exon:8854;Parent=Msa1152180-mRNA-1
chr7_4 exon 37423299 37423840 37423299 ID=Msa1152180-mRNA-1:exon:8855;Parent=Msa1152180-mRNA-1
chr7_4 CDS 37421913 37422030 37421913 ID=Msa1152180-mRNA-1:cds;Parent=Msa1152180-mRNA-1
chr7_4 CDS 37423299 37423840 37423299 ID=Msa1152180-mRNA-1:cds;Parent=Msa1152180-mRNA-1
Gene Sequence

>Msa1152180

ATGCCCACCGATGGTCGAGATGAACATCATACTAACAGTAGAAGAACCAGAAGACGGTTAGAAACACACAACGAGCTTCAGCGCAGAGGAAATACTCAAGCCCCAGAAACAATTATTGGTCCTGCACCTCGGCGTAATGTTTTACCACGCTCTGTTGTTGCCGATTTCCCTCCTAATGATGCGCGACTCCTCAGGGAATTTTCTGCTCGTCATGCTGGCTTTCTTCTTTCAGAACAAACACATCCCCTTGACATAAGACGTGGAGCTTACGAGTATTTCGCCAACTTCCTCAAGCTCTTGCGATCACACTCTACCTTAGACTTGATGACTACATTAAAATCACATGTTGCTGAAGGACTCGATATTATTAATATGTATGGCTTCAGAGGTGAATGGCTTGATGAGTTAGTTCTTCGTCTGAATCCCTCCACTCTTGATATCGCCAAAGAAGAGCTGCGAAACCTGACTGACCAAGAAGCCAAGTATACTAATTCGAAACTTGTTGGAGAGTTGGAGGAGGAATATGCAATCTTAACATACAAATTACATGAATTAAGAAGACAGATTAGCGACGAGAAACTAGCTATGGACTGCGTTTCTAATAGGAAGAAGCAAGTTAAGGAAGAAATAGCAAGCTTAAATGACCCTTTTAATATTTAG

Protein sequence

>Msa1152180

MPTDGRDEHHTNSRRTRRRLETHNELQRRGNTQAPETIIGPAPRRNVLPRSVVADFPPNDARLLREFSARHAGFLLSEQTHPLDIRRGAYEYFANFLKLLRSHSTLDLMTTLKSHVAEGLDIINMYGFRGEWLDELVLRLNPSTLDIAKEELRNLTDQEAKYTNSKLVGELEEEYAILTYKLHELRRQISDEKLAMDCVSNRKKQVKEEIASLNDPFNI*