Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803730 | XP_003612933.1 | 96.040 | 303 | 12 | 0 | 1 | 303 | 1 | 303 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803730 | sp|Q38826|IAA8_ARATH | 67.010 | 291 | 64 | 9 | 21 | 303 | 21 | 287 | 2.11e-120 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803730 | G7KF56 | 96.040 | 303 | 12 | 0 | 1 | 303 | 1 | 303 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0803730 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0720690 | Msa0803730 | 0.841919 | 3.547381e-58 | -8.615850e-47 |
| Msa0803730 | Msa0841820 | 0.908516 | 1.570559e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803730 | MtrunA17_Chr5g0411501 | 96.040 | 303 | 12 | 0 | 1 | 303 | 1 | 303 | 0.0 | 609 |
| Msa0803730 | MtrunA17_Chr8g0366881 | 69.632 | 326 | 66 | 6 | 1 | 303 | 1 | 316 | 6.88e-156 | 442 |
| Msa0803730 | MtrunA17_Chr5g0428141 | 57.432 | 296 | 100 | 11 | 21 | 303 | 33 | 315 | 1.46e-96 | 291 |
| Msa0803730 | MtrunA17_Chr2g0331411 | 48.589 | 319 | 106 | 10 | 16 | 302 | 1 | 293 | 1.71e-84 | 259 |
| Msa0803730 | MtrunA17_Chr6g0486121 | 51.321 | 265 | 78 | 7 | 51 | 314 | 15 | 229 | 1.76e-76 | 236 |
| Msa0803730 | MtrunA17_Chr8g0390281 | 48.921 | 278 | 100 | 8 | 40 | 303 | 12 | 261 | 1.10e-74 | 233 |
| Msa0803730 | MtrunA17_Chr1g0190711 | 44.030 | 268 | 92 | 10 | 51 | 314 | 15 | 228 | 1.43e-51 | 172 |
| Msa0803730 | MtrunA17_Chr1g0187921 | 43.774 | 265 | 87 | 8 | 51 | 314 | 8 | 211 | 7.47e-51 | 170 |
| Msa0803730 | MtrunA17_Chr7g0260641 | 59.712 | 139 | 49 | 3 | 176 | 314 | 94 | 225 | 8.10e-48 | 162 |
| Msa0803730 | MtrunA17_Chr1g0184791 | 57.718 | 149 | 53 | 4 | 170 | 314 | 78 | 220 | 9.98e-48 | 162 |
| Msa0803730 | MtrunA17_Chr1g0184801 | 37.838 | 259 | 72 | 9 | 48 | 303 | 9 | 181 | 6.81e-40 | 140 |
| Msa0803730 | MtrunA17_Chr1g0187961 | 43.094 | 181 | 65 | 6 | 134 | 314 | 23 | 165 | 2.77e-37 | 132 |
| Msa0803730 | MtrunA17_Chr1g0166011 | 35.227 | 264 | 76 | 9 | 51 | 314 | 1 | 169 | 2.49e-35 | 128 |
| Msa0803730 | MtrunA17_Chr7g0260621 | 36.059 | 269 | 86 | 11 | 46 | 314 | 6 | 188 | 6.17e-34 | 125 |
| Msa0803730 | MtrunA17_Chr1g0183251 | 42.581 | 155 | 57 | 6 | 180 | 302 | 81 | 235 | 1.61e-25 | 104 |
| Msa0803730 | MtrunA17_Chr8g0340731 | 38.636 | 176 | 85 | 6 | 151 | 303 | 69 | 244 | 1.86e-25 | 103 |
| Msa0803730 | MtrunA17_Chr2g0330951 | 40.123 | 162 | 75 | 4 | 163 | 303 | 78 | 238 | 6.56e-25 | 102 |
| Msa0803730 | MtrunA17_Chr4g0004181 | 45.255 | 137 | 41 | 5 | 178 | 314 | 51 | 153 | 3.04e-23 | 95.5 |
| Msa0803730 | MtrunA17_Chr2g0332141 | 49.505 | 101 | 35 | 4 | 217 | 314 | 8 | 95 | 3.84e-23 | 93.6 |
| Msa0803730 | MtrunA17_Chr4g0069561 | 33.333 | 135 | 57 | 5 | 175 | 303 | 60 | 167 | 3.18e-14 | 70.5 |
| Msa0803730 | MtrunA17_Chr3g0137601 | 28.477 | 151 | 75 | 4 | 162 | 304 | 69 | 194 | 4.54e-14 | 70.9 |
| Msa0803730 | MtrunA17_Chr1g0193861 | 41.111 | 90 | 39 | 2 | 214 | 303 | 82 | 157 | 6.45e-12 | 63.5 |
| Msa0803730 | MtrunA17_Chr7g0270851 | 39.326 | 89 | 40 | 2 | 215 | 303 | 68 | 142 | 5.76e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803730 | AT2G22670.5 | 67.010 | 291 | 64 | 9 | 21 | 303 | 21 | 287 | 1.61e-121 | 354 |
| Msa0803730 | AT2G22670.2 | 67.010 | 291 | 64 | 9 | 21 | 303 | 21 | 287 | 1.61e-121 | 354 |
| Msa0803730 | AT2G22670.3 | 67.010 | 291 | 64 | 9 | 21 | 303 | 21 | 287 | 2.14e-121 | 354 |
| Msa0803730 | AT2G22670.1 | 67.010 | 291 | 64 | 9 | 21 | 303 | 21 | 287 | 2.14e-121 | 354 |
| Msa0803730 | AT2G22670.4 | 67.010 | 291 | 64 | 9 | 21 | 303 | 38 | 304 | 2.31e-121 | 354 |
| Msa0803730 | AT5G65670.1 | 57.770 | 296 | 104 | 6 | 13 | 303 | 25 | 304 | 2.98e-109 | 323 |
| Msa0803730 | AT5G65670.2 | 57.770 | 296 | 104 | 6 | 13 | 303 | 25 | 304 | 3.22e-109 | 323 |
| Msa0803730 | AT4G29080.1 | 45.541 | 314 | 120 | 9 | 16 | 314 | 3 | 280 | 1.42e-75 | 236 |
| Msa0803730 | AT4G14550.3 | 44.444 | 252 | 83 | 6 | 51 | 302 | 1 | 195 | 1.25e-54 | 179 |
| Msa0803730 | AT4G14550.1 | 42.803 | 264 | 90 | 6 | 51 | 314 | 1 | 203 | 1.93e-54 | 179 |
| Msa0803730 | AT4G14550.2 | 44.664 | 253 | 81 | 6 | 51 | 302 | 1 | 195 | 2.37e-54 | 179 |
| Msa0803730 | AT3G04730.1 | 39.928 | 278 | 85 | 7 | 51 | 314 | 2 | 211 | 4.84e-50 | 168 |
| Msa0803730 | AT3G23050.2 | 41.667 | 264 | 84 | 8 | 51 | 303 | 6 | 210 | 3.11e-48 | 162 |
| Msa0803730 | AT3G23050.1 | 41.091 | 275 | 88 | 9 | 51 | 314 | 6 | 217 | 3.37e-48 | 164 |
| Msa0803730 | AT1G04250.1 | 40.625 | 256 | 86 | 8 | 49 | 302 | 5 | 196 | 5.39e-48 | 162 |
| Msa0803730 | AT1G04240.1 | 51.938 | 129 | 41 | 4 | 175 | 303 | 58 | 165 | 8.58e-35 | 127 |
| Msa0803730 | AT1G04240.2 | 51.938 | 129 | 41 | 4 | 175 | 303 | 158 | 265 | 4.65e-34 | 128 |
| Msa0803730 | AT4G14550.4 | 40.580 | 207 | 66 | 5 | 51 | 256 | 1 | 151 | 7.58e-33 | 121 |
| Msa0803730 | AT5G43700.1 | 47.794 | 136 | 44 | 5 | 179 | 314 | 60 | 168 | 2.74e-31 | 117 |
| Msa0803730 | AT3G23030.1 | 48.837 | 129 | 34 | 3 | 175 | 303 | 54 | 150 | 5.18e-30 | 114 |
| Msa0803730 | AT3G23030.2 | 48.837 | 129 | 34 | 3 | 175 | 303 | 141 | 237 | 2.54e-29 | 114 |
| Msa0803730 | AT1G15580.1 | 43.077 | 130 | 43 | 2 | 174 | 303 | 46 | 144 | 4.12e-28 | 108 |
| Msa0803730 | AT4G28640.1 | 41.667 | 156 | 64 | 4 | 166 | 302 | 73 | 220 | 7.25e-28 | 110 |
| Msa0803730 | AT4G28640.3 | 41.667 | 156 | 64 | 4 | 166 | 302 | 73 | 220 | 9.44e-28 | 110 |
| Msa0803730 | AT4G28640.2 | 42.763 | 152 | 68 | 4 | 166 | 302 | 73 | 220 | 3.16e-27 | 109 |
| Msa0803730 | AT2G33310.3 | 43.038 | 158 | 61 | 4 | 166 | 302 | 60 | 209 | 4.38e-27 | 108 |
| Msa0803730 | AT2G33310.1 | 43.038 | 158 | 61 | 4 | 166 | 302 | 60 | 209 | 4.38e-27 | 108 |
| Msa0803730 | AT3G23050.3 | 36.866 | 217 | 69 | 7 | 51 | 256 | 6 | 165 | 3.03e-26 | 103 |
| Msa0803730 | AT1G52830.1 | 37.908 | 153 | 67 | 4 | 156 | 308 | 45 | 169 | 3.86e-26 | 103 |
| Msa0803730 | AT2G33310.2 | 43.396 | 159 | 60 | 5 | 166 | 302 | 60 | 210 | 4.48e-26 | 105 |
| Msa0803730 | AT1G04550.2 | 41.139 | 158 | 63 | 4 | 166 | 302 | 54 | 202 | 7.28e-26 | 104 |
| Msa0803730 | AT4G14560.1 | 45.324 | 139 | 42 | 4 | 176 | 314 | 50 | 154 | 8.72e-25 | 99.8 |
| Msa0803730 | AT3G15540.1 | 43.571 | 140 | 53 | 4 | 164 | 302 | 53 | 167 | 3.23e-24 | 99.0 |
| Msa0803730 | AT3G16500.1 | 40.876 | 137 | 62 | 3 | 182 | 303 | 104 | 236 | 6.90e-24 | 100 |
| Msa0803730 | AT3G16500.2 | 40.876 | 137 | 62 | 3 | 182 | 303 | 104 | 236 | 8.63e-24 | 99.8 |
| Msa0803730 | AT1G04100.1 | 38.095 | 147 | 63 | 4 | 183 | 303 | 95 | 239 | 5.01e-23 | 97.4 |
| Msa0803730 | AT1G51950.1 | 38.732 | 142 | 63 | 4 | 182 | 303 | 97 | 234 | 6.91e-21 | 91.7 |
| Msa0803730 | AT5G25890.1 | 38.710 | 124 | 53 | 3 | 180 | 303 | 47 | 147 | 4.23e-18 | 81.6 |
| Msa0803730 | AT3G17600.1 | 34.507 | 142 | 63 | 6 | 164 | 303 | 28 | 141 | 2.30e-17 | 79.0 |
| Msa0803730 | AT3G62100.2 | 41.573 | 89 | 37 | 2 | 215 | 303 | 82 | 155 | 3.39e-14 | 70.1 |
| Msa0803730 | AT3G62100.1 | 41.573 | 89 | 37 | 2 | 215 | 303 | 82 | 155 | 5.28e-14 | 70.1 |
| Msa0803730 | AT2G46990.2 | 38.202 | 89 | 40 | 1 | 215 | 303 | 84 | 157 | 2.08e-13 | 67.8 |
| Msa0803730 | AT2G46990.1 | 38.202 | 89 | 40 | 1 | 215 | 303 | 84 | 157 | 4.36e-13 | 67.4 |
| Msa0803730 | AT1G04550.1 | 36.842 | 114 | 51 | 3 | 166 | 258 | 54 | 167 | 1.22e-11 | 63.2 |
Find 138 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTCATCATTGTTGTTCT+TGG | 0.148811 | 5_3:+19046045 | None:intergenic |
| TTGCAGAAGAATGTGGTTTC+GGG | 0.253040 | 5_3:-19046584 | Msa0803730:CDS |
| GGTAAGTTTAATGCTAATTC+AGG | 0.253741 | 5_3:-19046429 | Msa0803730:CDS |
| CACCCTCTAACTTCTGCTTT+TGG | 0.299819 | 5_3:+19042506 | None:intergenic |
| TAGATCTACCTTCCTAAGAT+AGG | 0.300119 | 5_3:+19045967 | None:intergenic |
| GGTAACTTCACAAGATATTA+TGG | 0.324821 | 5_3:+19042322 | None:intergenic |
| TTCACAAAACTAATATTAAA+AGG | 0.330534 | 5_3:+19042301 | None:intergenic |
| ATGAATTATTATCGTATTAC+CGG | 0.344319 | 5_3:-19041939 | Msa0803730:three_prime_UTR |
| GTGAAGTCTGTAATCACTAT+AGG | 0.346731 | 5_3:-19042283 | Msa0803730:three_prime_UTR |
| TTTGGACTTCTCCATGGCCC+TGG | 0.349497 | 5_3:+19042524 | None:intergenic |
| TTTGCAGAAGAATGTGGTTT+CGG | 0.361512 | 5_3:-19046585 | Msa0803730:CDS |
| GAGTTGAGGTTGGGTCTTCC+CGG | 0.364318 | 5_3:-19046701 | Msa0803730:CDS |
| TGGATGGTGCTCCCTATCTT+AGG | 0.366786 | 5_3:-19045979 | Msa0803730:CDS |
| GGCCTCCTATAAGATCATTT+AGG | 0.368510 | 5_3:-19046090 | Msa0803730:CDS |
| CATTGGTGCCTCCGGTGATT+CGG | 0.391800 | 5_3:+19042029 | None:intergenic |
| TTAAGCAGAGAAAGAAAGAA+AGG | 0.393981 | 5_3:+19047618 | None:intergenic |
| TTGGACTTCTCCATGGCCCT+GGG | 0.402537 | 5_3:+19042525 | None:intergenic |
| TTCTTTCCTCCACAGCTCCC+AGG | 0.411801 | 5_3:-19042542 | Msa0803730:intron |
| GATGGAGACTGGATGCTTGT+AGG | 0.411867 | 5_3:-19045663 | Msa0803730:CDS |
| TTCAATTCATCCAAGCAAAC+AGG | 0.412320 | 5_3:+19042256 | None:intergenic |
| AAAAGTGAACTTGAATTTGA+AGG | 0.413246 | 5_3:-19046729 | Msa0803730:CDS |
| AAGGCTACTGAGTTGAGGTT+GGG | 0.419598 | 5_3:-19046710 | Msa0803730:CDS |
| GGATTTGCTGATACCGTTGA+TGG | 0.420125 | 5_3:-19046551 | Msa0803730:CDS |
| TCAATCACCCGAGAGGGAAA+TGG | 0.422310 | 5_3:-19046675 | Msa0803730:CDS |
| AACGAATGTTGTTCACGATT+AGG | 0.423108 | 5_3:+19042173 | None:intergenic |
| GTCTCCGACGGCGGTGGCTA+CGG | 0.424136 | 5_3:-19046867 | Msa0803730:CDS |
| TGATCTTGATACTCAATCAT+TGG | 0.426305 | 5_3:+19042012 | None:intergenic |
| GACGATGGAACGGAATTACT+TGG | 0.426582 | 5_3:-19046816 | Msa0803730:CDS |
| CCTTTACTTCCTGCAAAAGA+TGG | 0.428383 | 5_3:-19046608 | Msa0803730:CDS |
| ATGGAGACTGGATGCTTGTA+GGG | 0.429252 | 5_3:-19045662 | Msa0803730:CDS |
| TATAGGAAAACCTGTTTGCT+TGG | 0.431666 | 5_3:-19042266 | Msa0803730:three_prime_UTR |
| AGGAACTACTGGTCATAATC+AGG | 0.436346 | 5_3:-19046307 | Msa0803730:CDS |
| TACTCAATCATTGGTGCCTC+CGG | 0.437173 | 5_3:+19042021 | None:intergenic |
| ACAAATATAACAAACTTTCA+AGG | 0.437406 | 5_3:+19042350 | None:intergenic |
| ACAAAGGCAGTCATCAGTTC+CGG | 0.440575 | 5_3:+19042482 | None:intergenic |
| CTCTCGGGTGATTGAGATCC+GGG | 0.441176 | 5_3:+19046683 | None:intergenic |
| ATCCGAATCCATTTCCCTCT+CGG | 0.452945 | 5_3:+19046667 | None:intergenic |
| GATATCATACCACCGCTGTT+TGG | 0.453427 | 5_3:+19044822 | None:intergenic |
| TCCGAATCCATTTCCCTCTC+GGG | 0.455237 | 5_3:+19046668 | None:intergenic |
| ACCCGAGAGGGAAATGGATT+CGG | 0.455743 | 5_3:-19046669 | Msa0803730:CDS |
| CCTCTCGGGTGATTGAGATC+CGG | 0.459016 | 5_3:+19046682 | None:intergenic |
| TGTGGTTCCCATGGAGCTCC+AGG | 0.460461 | 5_3:-19045762 | Msa0803730:CDS |
| CTTTCCTGCAAAACCTTACT+CGG | 0.461106 | 5_3:+19046345 | None:intergenic |
| CTCCACAGCTCCCAGGGCCA+TGG | 0.461661 | 5_3:-19042535 | Msa0803730:intron |
| AGCAGAAGTTAGAGGGTGTC+CGG | 0.462111 | 5_3:-19042501 | Msa0803730:CDS |
| GCCTAGACCTGGTGGAGCTC+AGG | 0.463855 | 5_3:-19046388 | Msa0803730:CDS |
| GCAGGTGCTGCTTCTATCGC+TGG | 0.467925 | 5_3:-19046285 | Msa0803730:CDS |
| AGTCCAAAAGCAGAAGTTAG+AGG | 0.470080 | 5_3:-19042509 | Msa0803730:CDS |
| GCCTGAGCTCCACCAGGTCT+AGG | 0.476166 | 5_3:+19046387 | None:intergenic |
| TCTGTTTAACTGCCAATGCC+AGG | 0.477629 | 5_3:+19042399 | None:intergenic |
| TCTTTCCTCCACAGCTCCCA+GGG | 0.484683 | 5_3:-19042541 | Msa0803730:intron |
| GAAGGCTACTGAGTTGAGGT+TGG | 0.492437 | 5_3:-19046711 | Msa0803730:CDS |
| GTAAGTTTAATGCTAATTCA+GGG | 0.493399 | 5_3:-19046428 | Msa0803730:CDS |
| TATGACTAATTCCCTGGCAT+TGG | 0.497535 | 5_3:-19042411 | Msa0803730:CDS |
| GACGGCGGTGGCTACGGAGG+AGG | 0.499617 | 5_3:-19046861 | Msa0803730:CDS |
| AGTGAAAGAAATGCCGAGTA+AGG | 0.502631 | 5_3:-19046358 | Msa0803730:CDS |
| ACAAAGAGTGCAGTGGGACC+TGG | 0.505055 | 5_3:+19046013 | None:intergenic |
| GTGGTTTCGGGGAATAAGAG+AGG | 0.508267 | 5_3:-19046572 | Msa0803730:CDS |
| TTCCTAAATGATCTTATAGG+AGG | 0.509027 | 5_3:+19046088 | None:intergenic |
| GCAGGCCAGTGTGGTTCCCA+TGG | 0.511832 | 5_3:-19045771 | Msa0803730:intron |
| CATATTCTGAACCATGCAAA+AGG | 0.516368 | 5_3:+19045706 | None:intergenic |
| TGCTTGTAGGGGACGTACCA+TGG | 0.519764 | 5_3:-19045650 | Msa0803730:CDS |
| AAGGATTATGACTAATTCCC+TGG | 0.522985 | 5_3:-19042417 | Msa0803730:CDS |
| TTGGATCCAGCATTAAAACT+TGG | 0.523457 | 5_3:+19042455 | None:intergenic |
| TTCTATCGCTGGTTGTGCAC+CGG | 0.524204 | 5_3:-19046274 | Msa0803730:CDS |
| TGTGACAGGGCACAAGTTGT+TGG | 0.524224 | 5_3:-19046115 | Msa0803730:intron |
| GGGATTGTCTGACTGTTCAT+CGG | 0.526253 | 5_3:-19046795 | Msa0803730:CDS |
| AAATAAAGCAGCAGCAACAC+TGG | 0.527045 | 5_3:+19041916 | None:intergenic |
| AGATCTACCTTCCTAAGATA+GGG | 0.527392 | 5_3:+19045968 | None:intergenic |
| TTGGCAGTTAAACAGATATC+CGG | 0.531773 | 5_3:-19042392 | Msa0803730:CDS |
| CAAGAACAACAATGATGAAG+TGG | 0.532840 | 5_3:-19046044 | Msa0803730:CDS |
| CTCACTTATGAAGATAAAGA+TGG | 0.536028 | 5_3:-19045681 | Msa0803730:CDS |
| ATTGTTGTTCTTGGAAGCGT+TGG | 0.536259 | 5_3:+19046054 | None:intergenic |
| ACCTTCACAAAGAGTGCAGT+GGG | 0.538673 | 5_3:+19046007 | None:intergenic |
| GGAAATGTCTCCGACGGCGG+TGG | 0.539855 | 5_3:-19046873 | Msa0803730:exon |
| GCGGTGGCTACGGAGGAGGA+AGG | 0.542724 | 5_3:-19046857 | Msa0803730:CDS |
| ATGAAGATAAAGATGGAGAC+TGG | 0.547731 | 5_3:-19045674 | Msa0803730:CDS |
| CAAATATAACAAACTTTCAA+GGG | 0.548651 | 5_3:+19042351 | None:intergenic |
| AACAGCTGAACATCTTCTCA+AGG | 0.549658 | 5_3:+19045909 | None:intergenic |
| TAACCTACCTACTGTCACAC+TGG | 0.550217 | 5_3:+19042122 | None:intergenic |
| GAGCTCCATGGGAACCACAC+TGG | 0.553553 | 5_3:+19045766 | None:intergenic |
| GATGAAGTGGATGGAAAACC+AGG | 0.553790 | 5_3:-19046031 | Msa0803730:CDS |
| TGTGCAGCTAGAGGAACTAC+TGG | 0.555927 | 5_3:-19046318 | Msa0803730:CDS |
| AAAGCAGCAGCAACACTGGC+CGG | 0.558554 | 5_3:+19041920 | None:intergenic |
| GTGCTCGCCTGAGCTCCACC+AGG | 0.561039 | 5_3:+19046381 | None:intergenic |
| GCTTGTAGGGGACGTACCAT+GGG | 0.563761 | 5_3:-19045649 | Msa0803730:CDS |
| GTCCAAAAGCAGAAGTTAGA+GGG | 0.564866 | 5_3:-19042508 | Msa0803730:CDS |
| GATTTGCTGATACCGTTGAT+GGG | 0.566751 | 5_3:-19046550 | Msa0803730:CDS |
| TTTGTGAAGGTCAGCATGGA+TGG | 0.570866 | 5_3:-19045995 | Msa0803730:CDS |
| GCAGGAAGTAAAGGGAACAA+TGG | 0.573981 | 5_3:+19046617 | None:intergenic |
| ACAGGGCACAAGTTGTTGGT+TGG | 0.575157 | 5_3:-19046111 | Msa0803730:intron |
| AGATGGTTTGCAGAAGAATG+TGG | 0.577585 | 5_3:-19046591 | Msa0803730:CDS |
| ATGGCTGTTCAAAATGAGCA+AGG | 0.578648 | 5_3:-19042100 | Msa0803730:three_prime_UTR |
| GAATGTTGTTCACGATTAGG+AGG | 0.579103 | 5_3:+19042176 | None:intergenic |
| GCGCAAACTGTCGTCGACGA+TGG | 0.579580 | 5_3:-19046831 | Msa0803730:CDS |
| TAAAGAACATCTTACTCCCA+TGG | 0.581718 | 5_3:+19045633 | None:intergenic |
| TCCTCCGTAGCCACCGCCGT+CGG | 0.586598 | 5_3:+19046863 | None:intergenic |
| CTGTTTAACTGCCAATGCCA+GGG | 0.587422 | 5_3:+19042400 | None:intergenic |
| CGGTGGCTACGGAGGAGGAA+GGG | 0.593859 | 5_3:-19046856 | Msa0803730:CDS |
| ACTACTGGTCATAATCAGGC+AGG | 0.595833 | 5_3:-19046303 | Msa0803730:CDS |
| ACGATGGAACGGAATTACTT+GGG | 0.597669 | 5_3:-19046815 | Msa0803730:CDS |
| CGGATCTCAATCACCCGAGA+GGG | 0.597943 | 5_3:-19046681 | Msa0803730:CDS |
| GATTAGGAGGAAAGAAAGAG+TGG | 0.599330 | 5_3:+19042189 | None:intergenic |
| ATCCAGCATTAAAACTTGGT+CGG | 0.599466 | 5_3:+19042459 | None:intergenic |
| AACTGTCGTCGACGATGGAA+CGG | 0.600872 | 5_3:-19046826 | Msa0803730:CDS |
| TCCCACTGCACTCTTTGTGA+AGG | 0.601153 | 5_3:-19046008 | Msa0803730:CDS |
| AACAACAATGATGAAGTGGA+TGG | 0.601893 | 5_3:-19046040 | Msa0803730:CDS |
| TAGGGAAATGTCTCCGACGG+CGG | 0.603529 | 5_3:-19046876 | Msa0803730:exon |
| GGTTGCTTTAGTTGTGAACA+AGG | 0.607849 | 5_3:-19042078 | Msa0803730:three_prime_UTR |
| ATTAAAACTTGGTCGGACAA+AGG | 0.611249 | 5_3:+19042466 | None:intergenic |
| TCCGACGGCGGTGGCTACGG+AGG | 0.612859 | 5_3:-19046864 | Msa0803730:CDS |
| TGATGAGTGAGAGCAAGCTG+AGG | 0.616205 | 5_3:-19045731 | Msa0803730:CDS |
| ATGCTATCGCCTAGACCTGG+TGG | 0.616679 | 5_3:-19046396 | Msa0803730:CDS |
| GTTGTTCCCAGTGTGACAGT+AGG | 0.619878 | 5_3:-19042129 | Msa0803730:three_prime_UTR |
| TGGTGCTCCCTATCTTAGGA+AGG | 0.620215 | 5_3:-19045975 | Msa0803730:CDS |
| TGCAGAAGAATGTGGTTTCG+GGG | 0.623774 | 5_3:-19046583 | Msa0803730:CDS |
| GACGTAACAATAAATAACAC+CGG | 0.626772 | 5_3:+19042373 | None:intergenic |
| GTGATGCTATCGCCTAGACC+TGG | 0.627514 | 5_3:-19046399 | Msa0803730:CDS |
| GATGAGTGAGAGCAAGCTGA+GGG | 0.627937 | 5_3:-19045730 | Msa0803730:CDS |
| TGGCTACGGAGGAGGAAGGG+CGG | 0.628102 | 5_3:-19046853 | Msa0803730:CDS |
| GAAAGGCCTTGTGCAGCTAG+AGG | 0.628138 | 5_3:-19046327 | Msa0803730:CDS |
| AACCTACCTACTGTCACACT+GGG | 0.632469 | 5_3:+19042123 | None:intergenic |
| TGGCTGTTCAAAATGAGCAA+GGG | 0.632524 | 5_3:-19042099 | Msa0803730:three_prime_UTR |
| ATTTGAAGGCTACTGAGTTG+AGG | 0.639042 | 5_3:-19046715 | Msa0803730:CDS |
| GACCTTCACAAAGAGTGCAG+TGG | 0.642687 | 5_3:+19046006 | None:intergenic |
| CACCTGCGAAAACCCATCAA+CGG | 0.645296 | 5_3:+19046538 | None:intergenic |
| TGTGTAATGGCAGGCCAGTG+TGG | 0.646395 | 5_3:-19045780 | Msa0803730:intron |
| GGTTAGGGAAATGTCTCCGA+CGG | 0.647341 | 5_3:-19046879 | Msa0803730:exon |
| TTCCCAGTGTGACAGTAGGT+AGG | 0.650164 | 5_3:-19042125 | Msa0803730:three_prime_UTR |
| ACAGCTGAACATCTTCTCAA+GGG | 0.651538 | 5_3:+19045910 | None:intergenic |
| TGGAGACTGGATGCTTGTAG+GGG | 0.651918 | 5_3:-19045661 | Msa0803730:CDS |
| AACAATGTTAGACTGTATGT+TGG | 0.652275 | 5_3:+19042221 | None:intergenic |
| ATTAGGAGGAAAGAAAGAGT+GGG | 0.654434 | 5_3:+19042190 | None:intergenic |
| GTAGTTCCTCTAGCTGCACA+AGG | 0.655154 | 5_3:+19046321 | None:intergenic |
| ACTCTTTGTGAAGGTCAGCA+TGG | 0.660309 | 5_3:-19045999 | Msa0803730:CDS |
| ATTGTCTGACTGTTCATCGG+TGG | 0.681492 | 5_3:-19046792 | Msa0803730:CDS |
| GTAGATTGTGAAGTGAACTG+TGG | 0.689026 | 5_3:-19046912 | Msa0803730:intron |
| CCGGATCTCAATCACCCGAG+AGG | 0.692711 | 5_3:-19046682 | Msa0803730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCATTTTTTTAGTA+AGG | - | chr5_3:19042045-19042064 | Msa0803730:three_prime_UTR | 10.0% |
| !!! | TTTTTTCATTTTTTTAGTAA+GGG | - | chr5_3:19042046-19042065 | Msa0803730:three_prime_UTR | 10.0% |
| !!! | TTTTTCAATTTAAAATTTCA+TGG | - | chr5_3:19042401-19042420 | Msa0803730:CDS | 10.0% |
| !!! | TAATTTTTAATCGAAAATTA+GGG | - | chr5_3:19044933-19044952 | Msa0803730:intron | 10.0% |
| !! | TTGTTTAAATTGCTTATTAA+TGG | - | chr5_3:19042444-19042463 | Msa0803730:CDS | 15.0% |
| !!! | TTAGTTTTTAGTTAGTTTTT+TGG | - | chr5_3:19042562-19042581 | Msa0803730:intron | 15.0% |
| !!! | TTTATTTTTTTGTATTTTGG+TGG | - | chr5_3:19042606-19042625 | Msa0803730:intron | 15.0% |
| !! | ACAAATTAAGAAATACAAAA+AGG | - | chr5_3:19044185-19044204 | Msa0803730:intron | 15.0% |
| !! | ATCTTATATACAAATATTGT+TGG | - | chr5_3:19044557-19044576 | Msa0803730:intron | 15.0% |
| !! | TCTTATATACAAATATTGTT+GGG | - | chr5_3:19044558-19044577 | Msa0803730:intron | 15.0% |
| !!! | GTAATTTTTAATCGAAAATT+AGG | - | chr5_3:19044932-19044951 | Msa0803730:intron | 15.0% |
| !!! | AATTTTTAATCGAAAATTAG+GGG | - | chr5_3:19044934-19044953 | Msa0803730:intron | 15.0% |
| !!! | TATTTTTTTTGAAGAAATTC+AGG | - | chr5_3:19045681-19045700 | Msa0803730:CDS | 15.0% |
| !!! | TATTATAGTTCTGTAATTTA+CGG | - | chr5_3:19045971-19045990 | Msa0803730:CDS | 15.0% |
| !! | TTCACAAAACTAATATTAAA+AGG | + | chr5_3:19047242-19047261 | None:intergenic | 15.0% |
| !!! | GCTTTAAAAACAAACATAAA+TGG | + | chr5_3:19042343-19042362 | None:intergenic | 20.0% |
| !! | AATAAGCAATTTAAACAACA+AGG | + | chr5_3:19042442-19042461 | None:intergenic | 20.0% |
| !!! | TTTAGTTAGTTTTTTGGTAT+TGG | - | chr5_3:19042568-19042587 | Msa0803730:intron | 20.0% |
| !!! | TTTACAATATTTGTTATGCA+GGG | - | chr5_3:19043090-19043109 | Msa0803730:intron | 20.0% |
| !! | ATATGAAAATTTACCATATC+AGG | + | chr5_3:19043406-19043425 | None:intergenic | 20.0% |
| !!! | TTTTTCCTAAATGATCTTAT+AGG | + | chr5_3:19043458-19043477 | None:intergenic | 20.0% |
| !!! | TATTTTTGTTCTGAAATCTT+TGG | - | chr5_3:19043733-19043752 | Msa0803730:intron | 20.0% |
| !!! | TGTATTTCTTAATTTGTATG+CGG | + | chr5_3:19044182-19044201 | None:intergenic | 20.0% |
| !!! | GTAATATATTCTACTTTTGT+AGG | + | chr5_3:19044267-19044286 | None:intergenic | 20.0% |
| !! | AAATACTACATAACATTCAA+GGG | - | chr5_3:19044754-19044773 | Msa0803730:intron | 20.0% |
| !!! | ATTTTTAATCGAAAATTAGG+GGG | - | chr5_3:19044935-19044954 | Msa0803730:intron | 20.0% |
| !!! | ATAACTTTGCTTTCTAAAAA+GGG | + | chr5_3:19045119-19045138 | None:intergenic | 20.0% |
| !!! | AATAACTTTGCTTTCTAAAA+AGG | + | chr5_3:19045120-19045139 | None:intergenic | 20.0% |
| !! | ATTAGCAAATTAGTATGAAT+GGG | - | chr5_3:19045449-19045468 | Msa0803730:intron | 20.0% |
| !!! | ATTATAGTTCTGTAATTTAC+GGG | - | chr5_3:19045972-19045991 | Msa0803730:CDS | 20.0% |
| !! | TGTGGAGTAATTAATTAAAA+TGG | - | chr5_3:19046243-19046262 | Msa0803730:intron | 20.0% |
| !! | ATATCGACATAATGTTTATT+TGG | + | chr5_3:19046539-19046558 | None:intergenic | 20.0% |
| !!! | GTAGTTTGAGTAATTTTATT+TGG | - | chr5_3:19046736-19046755 | Msa0803730:CDS | 20.0% |
| !!! | GATTAAACTTAAATTGACTT+TGG | + | chr5_3:19046915-19046934 | None:intergenic | 20.0% |
| !! | CAAATATAACAAACTTTCAA+GGG | + | chr5_3:19047192-19047211 | None:intergenic | 20.0% |
| !! | ACAAATATAACAAACTTTCA+AGG | + | chr5_3:19047193-19047212 | None:intergenic | 20.0% |
| !! | ATGAATTATTATCGTATTAC+CGG | - | chr5_3:19047601-19047620 | Msa0803730:five_prime_UTR | 20.0% |
| !!! | TTTGTTTTTGTGTGTGTTTA+TGG | - | chr5_3:19042070-19042089 | Msa0803730:three_prime_UTR | 25.0% |
| !! | ACTAATTTGTAAGATCAGAA+AGG | + | chr5_3:19042490-19042509 | None:intergenic | 25.0% |
| ! | AAAAGTGAACTTGAATTTGA+AGG | - | chr5_3:19042811-19042830 | Msa0803730:intron | 25.0% |
| !!! | GTTTTGTTTTAGTGGTTTAA+TGG | - | chr5_3:19043065-19043084 | Msa0803730:intron | 25.0% |
| !!! | GTTTACAATATTTGTTATGC+AGG | - | chr5_3:19043089-19043108 | Msa0803730:intron | 25.0% |
| ! | GTAAGTTTAATGCTAATTCA+GGG | - | chr5_3:19043112-19043131 | Msa0803730:intron | 25.0% |
| ! | AAATTTACCATATCAGGATT+AGG | + | chr5_3:19043400-19043419 | None:intergenic | 25.0% |
| !! | GTAAATTTTCATATGTGACA+GGG | - | chr5_3:19043412-19043431 | Msa0803730:intron | 25.0% |
| ! | GTAAGATGTTCTTTAAATTC+TGG | - | chr5_3:19043915-19043934 | Msa0803730:intron | 25.0% |
| ! | AAACGACACTCATTTATAAA+CGG | + | chr5_3:19044152-19044171 | None:intergenic | 25.0% |
| !!! | TTATAAATGAGTGTCGTTTA+AGG | - | chr5_3:19044153-19044172 | Msa0803730:intron | 25.0% |
| ! | AAACACACCAATAGTTATTA+GGG | + | chr5_3:19044244-19044263 | None:intergenic | 25.0% |
| !!! | AATGTATGTTCACTTTTCAA+TGG | + | chr5_3:19044341-19044360 | None:intergenic | 25.0% |
| ! | CAAATACTACATAACATTCA+AGG | - | chr5_3:19044753-19044772 | Msa0803730:intron | 25.0% |
| ! | TCATTTGTCAAATTAAGAGA+TGG | - | chr5_3:19044866-19044885 | Msa0803730:intron | 25.0% |
| ! | CTATTGTGTAATAATACATC+TGG | - | chr5_3:19045313-19045332 | Msa0803730:intron | 25.0% |
| !! | TAAACTAATGCATTTGAGTT+GGG | - | chr5_3:19045370-19045389 | Msa0803730:intron | 25.0% |
| ! | CATTAGCAAATTAGTATGAA+TGG | - | chr5_3:19045448-19045467 | Msa0803730:intron | 25.0% |
| ! | TTAGCAAATTAGTATGAATG+GGG | - | chr5_3:19045450-19045469 | Msa0803730:intron | 25.0% |
| !! | ACTGTAAATCCATTTAAGAT+GGG | + | chr5_3:19045632-19045651 | None:intergenic | 25.0% |
| ! | TTACAGAACTATAATACTAG+AGG | + | chr5_3:19045967-19045986 | None:intergenic | 25.0% |
| ! | GTATCTTAAAACCAAGAAAA+TGG | - | chr5_3:19046033-19046052 | Msa0803730:CDS | 25.0% |
| ! | AGTATGAAATGTAGAAAATG+TGG | - | chr5_3:19046225-19046244 | Msa0803730:intron | 25.0% |
| ! | GAGCAATGAATTAAATTTGA+AGG | - | chr5_3:19046265-19046284 | Msa0803730:intron | 25.0% |
| !!! | GTATTTTCAAGCAATATATG+CGG | - | chr5_3:19046318-19046337 | Msa0803730:CDS | 25.0% |
| ! | TTTACAAATACACTAGTACA+TGG | + | chr5_3:19046365-19046384 | None:intergenic | 25.0% |
| ! | ACTCGCATGTTAAAAATTAT+TGG | + | chr5_3:19046392-19046411 | None:intergenic | 25.0% |
| !!! | TTTGTCTCCTTTATTTTCTT+TGG | - | chr5_3:19046447-19046466 | Msa0803730:intron | 25.0% |
| !!! | TTGTCTCCTTTATTTTCTTT+GGG | - | chr5_3:19046448-19046467 | Msa0803730:intron | 25.0% |
| ! | GAGTATTTCAAACTTTAGTT+GGG | - | chr5_3:19046581-19046600 | Msa0803730:CDS | 25.0% |
| !! | AGTATATATTTTGCAACTCA+TGG | + | chr5_3:19046704-19046723 | None:intergenic | 25.0% |
| !! | CAACTAAAATACACTTCTTT+TGG | + | chr5_3:19046786-19046805 | None:intergenic | 25.0% |
| !!! | CAAAAGAAGTGTATTTTAGT+TGG | - | chr5_3:19046784-19046803 | Msa0803730:CDS | 25.0% |
| !!! | ATTTGCTATTTGTAAACATG+TGG | - | chr5_3:19046813-19046832 | Msa0803730:CDS | 25.0% |
| !!! | TTTGCTATTTGTAAACATGT+GGG | - | chr5_3:19046814-19046833 | Msa0803730:CDS | 25.0% |
| ! | TCAAGGTTAAAATGTTATGT+AGG | + | chr5_3:19046870-19046889 | None:intergenic | 25.0% |
| !! | TAATTTTTAATCCGAATCAC+CGG | - | chr5_3:19047500-19047519 | Msa0803730:intron | 25.0% |
| TTAAGCAGAGAAAGAAAGAA+AGG | + | chr5_3:19041925-19041944 | None:intergenic | 30.0% | |
| ! | TTTTCTCATCACACAAACTT+GGG | + | chr5_3:19042793-19042812 | None:intergenic | 30.0% |
| ! | TTTTTCTCATCACACAAACT+TGG | + | chr5_3:19042794-19042813 | None:intergenic | 30.0% |
| ! | TTTGATGAAGTTGGTTTATG+CGG | - | chr5_3:19043030-19043049 | Msa0803730:intron | 30.0% |
| !!! | AAGTGCATGTTTTGTTTTAG+TGG | - | chr5_3:19043057-19043076 | Msa0803730:intron | 30.0% |
| GGTAAGTTTAATGCTAATTC+AGG | - | chr5_3:19043111-19043130 | Msa0803730:intron | 30.0% | |
| ! | GATTTTACTTACTTAGATGC+CGG | + | chr5_3:19043288-19043307 | None:intergenic | 30.0% |
| CTGAACAAACATGTATGATT+TGG | - | chr5_3:19043354-19043373 | Msa0803730:intron | 30.0% | |
| TAGATATCCTAATCCTGATA+TGG | - | chr5_3:19043390-19043409 | Msa0803730:intron | 30.0% | |
| ! | GGTAAATTTTCATATGTGAC+AGG | - | chr5_3:19043411-19043430 | Msa0803730:intron | 30.0% |
| TTCCTAAATGATCTTATAGG+AGG | + | chr5_3:19043455-19043474 | None:intergenic | 30.0% | |
| ATCATTTAGGAAAAACTCGA+TGG | - | chr5_3:19043463-19043482 | Msa0803730:intron | 30.0% | |
| CTCACTTATGAAGATAAAGA+TGG | - | chr5_3:19043859-19043878 | Msa0803730:intron | 30.0% | |
| ATAGTTATTAGGGGTAGTTT+AGG | + | chr5_3:19044234-19044253 | None:intergenic | 30.0% | |
| AAACTACCCCTAATAACTAT+TGG | - | chr5_3:19044234-19044253 | Msa0803730:intron | 30.0% | |
| AACACACCAATAGTTATTAG+GGG | + | chr5_3:19044243-19044262 | None:intergenic | 30.0% | |
| GAAACACACCAATAGTTATT+AGG | + | chr5_3:19044245-19044264 | None:intergenic | 30.0% | |
| TGTACACAACATTCATTTGA+GGG | - | chr5_3:19044298-19044317 | Msa0803730:intron | 30.0% | |
| ! | AGAGATTGTGGTAATGTATA+TGG | - | chr5_3:19044418-19044437 | Msa0803730:intron | 30.0% |
| !! | ATATGGATCAATTGGTCTTT+CGG | + | chr5_3:19044477-19044496 | None:intergenic | 30.0% |
| ACCAATTGATCCATATTTCT+GGG | - | chr5_3:19044481-19044500 | Msa0803730:intron | 30.0% | |
| AATAAGTCAACCCAGAAATA+TGG | + | chr5_3:19044494-19044513 | None:intergenic | 30.0% | |
| CTATGAGTATACATGGAAAT+TGG | + | chr5_3:19044611-19044630 | None:intergenic | 30.0% | |
| CAATTTCCATGTATACTCAT+AGG | - | chr5_3:19044609-19044628 | Msa0803730:intron | 30.0% | |
| AGATGTGATACCAAGTATAA+TGG | - | chr5_3:19045028-19045047 | Msa0803730:intron | 30.0% | |
| CATGCAATATCCATTATACT+TGG | + | chr5_3:19045041-19045060 | None:intergenic | 30.0% | |
| !!! | TTGATACTTTTTCAAGCAAG+TGG | + | chr5_3:19045087-19045106 | None:intergenic | 30.0% |
| !!! | AATCCTGCTACAGAATTTTT+TGG | - | chr5_3:19045191-19045210 | Msa0803730:intron | 30.0% |
| ! | AATAATACATCTGGTACTGA+AGG | - | chr5_3:19045322-19045341 | Msa0803730:intron | 30.0% |
| ! | ATAATACATCTGGTACTGAA+GGG | - | chr5_3:19045323-19045342 | Msa0803730:intron | 30.0% |
| CTAAACTAATGCATTTGAGT+TGG | - | chr5_3:19045369-19045388 | Msa0803730:intron | 30.0% | |
| TTATCTGCTTCATAACACAT+TGG | - | chr5_3:19045417-19045436 | Msa0803730:intron | 30.0% | |
| ! | TTCATAACACATTGGCTATA+TGG | - | chr5_3:19045425-19045444 | Msa0803730:intron | 30.0% |
| TACTTAATGAAAATGTGAGG+AGG | - | chr5_3:19045493-19045512 | Msa0803730:intron | 30.0% | |
| ACTTAATGAAAATGTGAGGA+GGG | - | chr5_3:19045494-19045513 | Msa0803730:intron | 30.0% | |
| ! | ATTTAAGATGGGAGAAACAA+AGG | + | chr5_3:19045621-19045640 | None:intergenic | 30.0% |
| ! | TTTGTTTCTCCCATCTTAAA+TGG | - | chr5_3:19045620-19045639 | Msa0803730:intron | 30.0% |
| CACTGTAAATCCATTTAAGA+TGG | + | chr5_3:19045633-19045652 | None:intergenic | 30.0% | |
| CTTTGATTAAAATTCGCATG+CGG | - | chr5_3:19045831-19045850 | Msa0803730:intron | 30.0% | |
| TCAACATACTCTCTTTGATT+GGG | + | chr5_3:19045911-19045930 | None:intergenic | 30.0% | |
| TTCAACATACTCTCTTTGAT+TGG | + | chr5_3:19045912-19045931 | None:intergenic | 30.0% | |
| ! | ATTCATTCAGTCCATTTTCT+TGG | + | chr5_3:19046047-19046066 | None:intergenic | 30.0% |
| AGAAGGCTGAAAATAATGAA+GGG | - | chr5_3:19046139-19046158 | Msa0803730:intron | 30.0% | |
| GCGAGTTATTTAAGTGTATT+TGG | - | chr5_3:19046406-19046425 | Msa0803730:CDS | 30.0% | |
| AACAGTATATCCTTATGTCA+TGG | - | chr5_3:19046559-19046578 | Msa0803730:CDS | 30.0% | |
| TTGAAATACTCCATGACATA+AGG | + | chr5_3:19046572-19046591 | None:intergenic | 30.0% | |
| ! | GGAGTATTTCAAACTTTAGT+TGG | - | chr5_3:19046580-19046599 | Msa0803730:CDS | 30.0% |
| ! | CAGTATTCAGTTTTGCTTAT+TGG | + | chr5_3:19046671-19046690 | None:intergenic | 30.0% |
| TTATTTGGAGATTTCAGCTA+TGG | - | chr5_3:19046751-19046770 | Msa0803730:CDS | 30.0% | |
| TATTTGGAGATTTCAGCTAT+GGG | - | chr5_3:19046752-19046771 | Msa0803730:CDS | 30.0% | |
| ! | CTAAAATACACTTCTTTTGG+TGG | + | chr5_3:19046783-19046802 | None:intergenic | 30.0% |
| !! | ATGTAGGATTTGCTAAAACA+AGG | + | chr5_3:19046854-19046873 | None:intergenic | 30.0% |
| GACGTAACAATAAATAACAC+CGG | + | chr5_3:19047170-19047189 | None:intergenic | 30.0% | |
| GGTAACTTCACAAGATATTA+TGG | + | chr5_3:19047221-19047240 | None:intergenic | 30.0% | |
| AACAATGTTAGACTGTATGT+TGG | + | chr5_3:19047322-19047341 | None:intergenic | 30.0% | |
| GAACAACTCTATTCAAAAAG+TGG | + | chr5_3:19047398-19047417 | None:intergenic | 30.0% | |
| TGATCTTGATACTCAATCAT+TGG | + | chr5_3:19047531-19047550 | None:intergenic | 30.0% | |
| !!! | TGTGGTTTTGAAGTTGGTTA+GGG | - | chr5_3:19042646-19042665 | Msa0803730:intron | 35.0% |
| ! | CATCTTTTGCAGGAAGTAAA+GGG | + | chr5_3:19042934-19042953 | None:intergenic | 35.0% |
| TTTGCAGAAGAATGTGGTTT+CGG | - | chr5_3:19042955-19042974 | Msa0803730:intron | 35.0% | |
| !! | GGTGATTAGTTTGATGAAGT+TGG | - | chr5_3:19043021-19043040 | Msa0803730:intron | 35.0% |
| TCTATCAACTCAACTACTCA+AGG | - | chr5_3:19043306-19043325 | Msa0803730:intron | 35.0% | |
| ! | CACTTCATCATTGTTGTTCT+TGG | + | chr5_3:19043498-19043517 | None:intergenic | 35.0% |
| CAAGAACAACAATGATGAAG+TGG | - | chr5_3:19043496-19043515 | Msa0803730:intron | 35.0% | |
| AACAACAATGATGAAGTGGA+TGG | - | chr5_3:19043500-19043519 | Msa0803730:intron | 35.0% | |
| AGATCTACCTTCCTAAGATA+GGG | + | chr5_3:19043575-19043594 | None:intergenic | 35.0% | |
| TAGATCTACCTTCCTAAGAT+AGG | + | chr5_3:19043576-19043595 | None:intergenic | 35.0% | |
| !! | ATGTTCAGCTGTTTTACTCT+AGG | - | chr5_3:19043641-19043660 | Msa0803730:intron | 35.0% |
| !! | GTTTTTGCTGATGATGAAGT+TGG | - | chr5_3:19043701-19043720 | Msa0803730:intron | 35.0% |
| AATCTTTGGCGATTGTGTAA+TGG | - | chr5_3:19043747-19043766 | Msa0803730:intron | 35.0% | |
| ! | TCACTCATCATTTCTTTTCC+TGG | + | chr5_3:19043799-19043818 | None:intergenic | 35.0% |
| CATATTCTGAACCATGCAAA+AGG | + | chr5_3:19043837-19043856 | None:intergenic | 35.0% | |
| ATGAAGATAAAGATGGAGAC+TGG | - | chr5_3:19043866-19043885 | Msa0803730:intron | 35.0% | |
| TAAAGAACATCTTACTCCCA+TGG | + | chr5_3:19043910-19043929 | None:intergenic | 35.0% | |
| !!! | CTATTTTGCTTCTGAGACAA+TGG | - | chr5_3:19043987-19044006 | Msa0803730:intron | 35.0% |
| GACACTCATTTATAAACGGA+AGG | + | chr5_3:19044148-19044167 | None:intergenic | 35.0% | |
| TTAGGGGTAGTTTAGGAAAA+GGG | + | chr5_3:19044227-19044246 | None:intergenic | 35.0% | |
| ATTAGGGGTAGTTTAGGAAA+AGG | + | chr5_3:19044228-19044247 | None:intergenic | 35.0% | |
| GTGTACACAACATTCATTTG+AGG | - | chr5_3:19044297-19044316 | Msa0803730:intron | 35.0% | |
| ! | CATTCATTTGAGGGCATAAT+TGG | - | chr5_3:19044307-19044326 | Msa0803730:intron | 35.0% |
| !! | TATGGATCAATTGGTCTTTC+GGG | + | chr5_3:19044476-19044495 | None:intergenic | 35.0% |
| GACCAATTGATCCATATTTC+TGG | - | chr5_3:19044480-19044499 | Msa0803730:intron | 35.0% | |
| ACCCAGAAATATGGATCAAT+TGG | + | chr5_3:19044485-19044504 | None:intergenic | 35.0% | |
| AATGTGCCTATGAGTATACA+TGG | + | chr5_3:19044618-19044637 | None:intergenic | 35.0% | |
| TATACTCATAGGCACATTTG+TGG | - | chr5_3:19044620-19044639 | Msa0803730:intron | 35.0% | |
| !!! | TGTTTTTTCATGCCAAACAG+CGG | - | chr5_3:19044706-19044725 | Msa0803730:intron | 35.0% |
| ! | TTCCTGAAATTTGCTCAACA+TGG | - | chr5_3:19044795-19044814 | Msa0803730:intron | 35.0% |
| ! | TCCTGAAATTTGCTCAACAT+GGG | - | chr5_3:19044796-19044815 | Msa0803730:intron | 35.0% |
| AAAAGACAGGAAGAAACCTA+AGG | + | chr5_3:19045170-19045189 | None:intergenic | 35.0% | |
| TAGCCAAAAAATTCTGTAGC+AGG | + | chr5_3:19045197-19045216 | None:intergenic | 35.0% | |
| !! | CATTTGAGTTGGGACAAAAA+TGG | - | chr5_3:19045380-19045399 | Msa0803730:intron | 35.0% |
| AAATTAGTATGAATGGGGTG+CGG | - | chr5_3:19045455-19045474 | Msa0803730:intron | 35.0% | |
| GGGTACTTAATGAAAATGTG+AGG | - | chr5_3:19045490-19045509 | Msa0803730:intron | 35.0% | |
| AGGAGGGAATAGTTAGAATA+TGG | - | chr5_3:19045510-19045529 | Msa0803730:intron | 35.0% | |
| GGAGGGAATAGTTAGAATAT+GGG | - | chr5_3:19045511-19045530 | Msa0803730:intron | 35.0% | |
| GAGGGAATAGTTAGAATATG+GGG | - | chr5_3:19045512-19045531 | Msa0803730:intron | 35.0% | |
| ATAGTTAGAATATGGGGCTT+TGG | - | chr5_3:19045518-19045537 | Msa0803730:intron | 35.0% | |
| ATGAGCTGAAGTTTCTTAGA+GGG | + | chr5_3:19045566-19045585 | None:intergenic | 35.0% | |
| AATGAGCTGAAGTTTCTTAG+AGG | + | chr5_3:19045567-19045586 | None:intergenic | 35.0% | |
| CATGATCAAATTCTTCAGTC+TGG | + | chr5_3:19045751-19045770 | None:intergenic | 35.0% | |
| TGAAGAATTTGATCATGACC+AGG | - | chr5_3:19045754-19045773 | Msa0803730:CDS | 35.0% | |
| ATTTACGGGCTTGTCTATTT+AGG | - | chr5_3:19045986-19046005 | Msa0803730:CDS | 35.0% | |
| TGGACTGAATGAATGACATA+AGG | - | chr5_3:19046053-19046072 | Msa0803730:CDS | 35.0% | |
| GGAATTGCAATTTAGTGAGT+GGG | + | chr5_3:19046086-19046105 | None:intergenic | 35.0% | |
| AGGAATTGCAATTTAGTGAG+TGG | + | chr5_3:19046087-19046106 | None:intergenic | 35.0% | |
| TGTTCATTGATACTTGCAGA+AGG | - | chr5_3:19046122-19046141 | Msa0803730:intron | 35.0% | |
| CAGAAGGCTGAAAATAATGA+AGG | - | chr5_3:19046138-19046157 | Msa0803730:intron | 35.0% | |
| GTGTTGCCCAAAGAAAATAA+AGG | + | chr5_3:19046457-19046476 | None:intergenic | 35.0% | |
| GCAACACTGAAATGAATTGA+TGG | - | chr5_3:19046470-19046489 | Msa0803730:intron | 35.0% | |
| GTGATCTCATTTGACATATC+AGG | + | chr5_3:19046504-19046523 | None:intergenic | 35.0% | |
| ATTGTTTCCTGCCTTTGATT+TGG | - | chr5_3:19046640-19046659 | Msa0803730:CDS | 35.0% | |
| ! | TTGTTTCCTGCCTTTGATTT+GGG | - | chr5_3:19046641-19046660 | Msa0803730:CDS | 35.0% |
| ! | TATTGGTTGACCCAAATCAA+AGG | + | chr5_3:19046654-19046673 | None:intergenic | 35.0% |
| AAATACACTTGAGCAAAGAG+AGG | + | chr5_3:19046979-19046998 | None:intergenic | 35.0% | |
| ATTAAAACTTGGTCGGACAA+AGG | + | chr5_3:19047077-19047096 | None:intergenic | 35.0% | |
| ATCCAGCATTAAAACTTGGT+CGG | + | chr5_3:19047084-19047103 | None:intergenic | 35.0% | |
| TTGGATCCAGCATTAAAACT+TGG | + | chr5_3:19047088-19047107 | None:intergenic | 35.0% | |
| !! | AAGTTTTAATGCTGGATCCA+AGG | - | chr5_3:19047087-19047106 | Msa0803730:intron | 35.0% |
| AAGGATTATGACTAATTCCC+TGG | - | chr5_3:19047123-19047142 | Msa0803730:intron | 35.0% | |
| TTGGCAGTTAAACAGATATC+CGG | - | chr5_3:19047148-19047167 | Msa0803730:intron | 35.0% | |
| GTGAAGTCTGTAATCACTAT+AGG | - | chr5_3:19047257-19047276 | Msa0803730:intron | 35.0% | |
| TATAGGAAAACCTGTTTGCT+TGG | - | chr5_3:19047274-19047293 | Msa0803730:intron | 35.0% | |
| TTCAATTCATCCAAGCAAAC+AGG | + | chr5_3:19047287-19047306 | None:intergenic | 35.0% | |
| ATTAGGAGGAAAGAAAGAGT+GGG | + | chr5_3:19047353-19047372 | None:intergenic | 35.0% | |
| AACGAATGTTGTTCACGATT+AGG | + | chr5_3:19047370-19047389 | None:intergenic | 35.0% | |
| GTAGATTGTGAAGTGAACTG+TGG | - | chr5_3:19042628-19042647 | Msa0803730:intron | 40.0% | |
| !!! | GTGAACTGTGGTTTTGAAGT+TGG | - | chr5_3:19042640-19042659 | Msa0803730:intron | 40.0% |
| !!! | CTGTGGTTTTGAAGTTGGTT+AGG | - | chr5_3:19042645-19042664 | Msa0803730:intron | 40.0% |
| ACGATGGAACGGAATTACTT+GGG | - | chr5_3:19042725-19042744 | Msa0803730:intron | 40.0% | |
| ATTTGAAGGCTACTGAGTTG+AGG | - | chr5_3:19042825-19042844 | Msa0803730:intron | 40.0% | |
| ! | CCATCTTTTGCAGGAAGTAA+AGG | + | chr5_3:19042935-19042954 | None:intergenic | 40.0% |
| CCTTTACTTCCTGCAAAAGA+TGG | - | chr5_3:19042932-19042951 | Msa0803730:intron | 40.0% | |
| ! | TTCTGCAAACCATCTTTTGC+AGG | + | chr5_3:19042944-19042963 | None:intergenic | 40.0% |
| ! | AGATGGTTTGCAGAAGAATG+TGG | - | chr5_3:19042949-19042968 | Msa0803730:intron | 40.0% |
| TTGCAGAAGAATGTGGTTTC+GGG | - | chr5_3:19042956-19042975 | Msa0803730:intron | 40.0% | |
| !! | GATTTGCTGATACCGTTGAT+GGG | - | chr5_3:19042990-19043009 | Msa0803730:intron | 40.0% |
| AGTGAAAGAAATGCCGAGTA+AGG | - | chr5_3:19043182-19043201 | Msa0803730:intron | 40.0% | |
| CTTTCCTGCAAAACCTTACT+CGG | + | chr5_3:19043198-19043217 | None:intergenic | 40.0% | |
| AGGAACTACTGGTCATAATC+AGG | - | chr5_3:19043233-19043252 | Msa0803730:intron | 40.0% | |
| GGCCTCCTATAAGATCATTT+AGG | - | chr5_3:19043450-19043469 | Msa0803730:intron | 40.0% | |
| ! | ATTGTTGTTCTTGGAAGCGT+TGG | + | chr5_3:19043489-19043508 | None:intergenic | 40.0% |
| ACAGCTGAACATCTTCTCAA+GGG | + | chr5_3:19043633-19043652 | None:intergenic | 40.0% | |
| AACAGCTGAACATCTTCTCA+AGG | + | chr5_3:19043634-19043653 | None:intergenic | 40.0% | |
| ! | AAGGAGTGCAAGTCTAATTC+TGG | + | chr5_3:19044129-19044148 | None:intergenic | 40.0% |
| TGTTGTGTACACTACTTCGA+AGG | + | chr5_3:19044289-19044308 | None:intergenic | 40.0% | |
| AGACACTCATTGTGAAACGA+AGG | - | chr5_3:19044391-19044410 | Msa0803730:intron | 40.0% | |
| GACACTCATTGTGAAACGAA+GGG | - | chr5_3:19044392-19044411 | Msa0803730:intron | 40.0% | |
| AACGAAGGGATTAGAGATTG+TGG | - | chr5_3:19044406-19044425 | Msa0803730:intron | 40.0% | |
| ACCCATGTTGAGCAAATTTC+AGG | + | chr5_3:19044800-19044819 | None:intergenic | 40.0% | |
| TGTAGCAGGATTGAAAAGAC+AGG | + | chr5_3:19045183-19045202 | None:intergenic | 40.0% | |
| AATTAGTATGAATGGGGTGC+GGG | - | chr5_3:19045456-19045475 | Msa0803730:intron | 40.0% | |
| TGAGCTGAAGTTTCTTAGAG+GGG | + | chr5_3:19045565-19045584 | None:intergenic | 40.0% | |
| CATATTCAGCAACACAATCC+TGG | + | chr5_3:19045775-19045794 | None:intergenic | 40.0% | |
| TGCGGCCAACCAAAATAATA+TGG | - | chr5_3:19045849-19045868 | Msa0803730:intron | 40.0% | |
| GCGGCCAACCAAAATAATAT+GGG | - | chr5_3:19045850-19045869 | Msa0803730:intron | 40.0% | |
| !!! | GGGTCCCATATTATTTTGGT+TGG | + | chr5_3:19045857-19045876 | None:intergenic | 40.0% |
| ! | ACGTGGGTCCCATATTATTT+TGG | + | chr5_3:19045861-19045880 | None:intergenic | 40.0% |
| AATATGGGACCCACGTAATA+TGG | - | chr5_3:19045865-19045884 | Msa0803730:intron | 40.0% | |
| GCAATTCCTTATGTATGTGC+AGG | - | chr5_3:19046098-19046117 | Msa0803730:CDS | 40.0% | |
| GAACATCCTGCACATACATA+AGG | + | chr5_3:19046107-19046126 | None:intergenic | 40.0% | |
| AGAACACATACCTAACCCAA+TGG | + | chr5_3:19046173-19046192 | None:intergenic | 40.0% | |
| TAGGTATGTGTTCTCAGTGA+TGG | - | chr5_3:19046179-19046198 | Msa0803730:intron | 40.0% | |
| GTTCTCAGTGATGGTTCATT+TGG | - | chr5_3:19046188-19046207 | Msa0803730:intron | 40.0% | |
| GAAAATACAGATGCATGCGT+AGG | + | chr5_3:19046306-19046325 | None:intergenic | 40.0% | |
| TTGACTTTGGCTGATGCTAT+GGG | + | chr5_3:19046902-19046921 | None:intergenic | 40.0% | |
| ! | ATTGACTTTGGCTGATGCTA+TGG | + | chr5_3:19046903-19046922 | None:intergenic | 40.0% |
| AGGCAGATAAATTGGAGTTC+GGG | + | chr5_3:19046959-19046978 | None:intergenic | 40.0% | |
| GAGGCAGATAAATTGGAGTT+CGG | + | chr5_3:19046960-19046979 | None:intergenic | 40.0% | |
| GCAAAGAGAGGCAGATAAAT+TGG | + | chr5_3:19046967-19046986 | None:intergenic | 40.0% | |
| AGTCCAAAAGCAGAAGTTAG+AGG | - | chr5_3:19047031-19047050 | Msa0803730:intron | 40.0% | |
| GTCCAAAAGCAGAAGTTAGA+GGG | - | chr5_3:19047032-19047051 | Msa0803730:intron | 40.0% | |
| !!! | CCTTTGCTTTTTACAGTCCT+TGG | + | chr5_3:19047107-19047126 | None:intergenic | 40.0% |
| CCAAGGACTGTAAAAAGCAA+AGG | - | chr5_3:19047104-19047123 | Msa0803730:intron | 40.0% | |
| TATGACTAATTCCCTGGCAT+TGG | - | chr5_3:19047129-19047148 | Msa0803730:intron | 40.0% | |
| GATTAGGAGGAAAGAAAGAG+TGG | + | chr5_3:19047354-19047373 | None:intergenic | 40.0% | |
| GAATGTTGTTCACGATTAGG+AGG | + | chr5_3:19047367-19047386 | None:intergenic | 40.0% | |
| ATGGCTGTTCAAAATGAGCA+AGG | - | chr5_3:19047440-19047459 | Msa0803730:intron | 40.0% | |
| TGGCTGTTCAAAATGAGCAA+GGG | - | chr5_3:19047441-19047460 | Msa0803730:intron | 40.0% | |
| ! | GGTTGCTTTAGTTGTGAACA+AGG | - | chr5_3:19047462-19047481 | Msa0803730:intron | 40.0% |
| ! | TTTTTAATCCGAATCACCGG+AGG | - | chr5_3:19047503-19047522 | Msa0803730:intron | 40.0% |
| AAATAAAGCAGCAGCAACAC+TGG | + | chr5_3:19047627-19047646 | None:intergenic | 40.0% | |
| GACGATGGAACGGAATTACT+TGG | - | chr5_3:19042724-19042743 | Msa0803730:intron | 45.0% | |
| GGGATTGTCTGACTGTTCAT+CGG | - | chr5_3:19042745-19042764 | Msa0803730:intron | 45.0% | |
| ATTGTCTGACTGTTCATCGG+TGG | - | chr5_3:19042748-19042767 | Msa0803730:intron | 45.0% | |
| ! | AAGGCTACTGAGTTGAGGTT+GGG | - | chr5_3:19042830-19042849 | Msa0803730:intron | 45.0% |
| ATCCGAATCCATTTCCCTCT+CGG | + | chr5_3:19042876-19042895 | None:intergenic | 45.0% | |
| GCAGGAAGTAAAGGGAACAA+TGG | + | chr5_3:19042926-19042945 | None:intergenic | 45.0% | |
| TGCAGAAGAATGTGGTTTCG+GGG | - | chr5_3:19042957-19042976 | Msa0803730:intron | 45.0% | |
| !! | GGATTTGCTGATACCGTTGA+TGG | - | chr5_3:19042989-19043008 | Msa0803730:intron | 45.0% |
| ! | AATGCCGAGTAAGGTTTTGC+AGG | - | chr5_3:19043191-19043210 | Msa0803730:intron | 45.0% |
| ! | CGAGTAAGGTTTTGCAGGAA+AGG | - | chr5_3:19043196-19043215 | Msa0803730:intron | 45.0% |
| ACTACTGGTCATAATCAGGC+AGG | - | chr5_3:19043237-19043256 | Msa0803730:intron | 45.0% | |
| GATGAAGTGGATGGAAAACC+AGG | - | chr5_3:19043509-19043528 | Msa0803730:intron | 45.0% | |
| ! | ACCTTCACAAAGAGTGCAGT+GGG | + | chr5_3:19043536-19043555 | None:intergenic | 45.0% |
| ACTCTTTGTGAAGGTCAGCA+TGG | - | chr5_3:19043541-19043560 | Msa0803730:intron | 45.0% | |
| TTTGTGAAGGTCAGCATGGA+TGG | - | chr5_3:19043545-19043564 | Msa0803730:intron | 45.0% | |
| TTTGGCGATTGTGTAATGGC+AGG | - | chr5_3:19043751-19043770 | Msa0803730:intron | 45.0% | |
| ! | TTCTTTTCCTGGAGCTCCAT+GGG | + | chr5_3:19043788-19043807 | None:intergenic | 45.0% |
| ! | TTTCTTTTCCTGGAGCTCCA+TGG | + | chr5_3:19043789-19043808 | None:intergenic | 45.0% |
| ATGGAGACTGGATGCTTGTA+GGG | - | chr5_3:19043878-19043897 | Msa0803730:intron | 45.0% | |
| !! | ATTGTTGGGTTGAGTCTCTC+AGG | - | chr5_3:19044572-19044591 | Msa0803730:intron | 45.0% |
| GTTGAGTCTCTCAGGTTTAC+TGG | - | chr5_3:19044580-19044599 | Msa0803730:intron | 45.0% | |
| GTGTCTGTTCTTTGAGTGCT+AGG | - | chr5_3:19044666-19044685 | Msa0803730:intron | 45.0% | |
| ! | TTTTTCATGCCAAACAGCGG+TGG | - | chr5_3:19044709-19044728 | Msa0803730:intron | 45.0% |
| GATATCATACCACCGCTGTT+TGG | + | chr5_3:19044721-19044740 | None:intergenic | 45.0% | |
| AAATTAGGGGGCTCATGTCA+TGG | - | chr5_3:19044947-19044966 | Msa0803730:intron | 45.0% | |
| GTTCAGCATGCACTATCCTT+AGG | - | chr5_3:19045151-19045170 | Msa0803730:intron | 45.0% | |
| AAGGGCTGCATAATGTTGCT+GGG | - | chr5_3:19045341-19045360 | Msa0803730:intron | 45.0% | |
| ATTAGTATGAATGGGGTGCG+GGG | - | chr5_3:19045457-19045476 | Msa0803730:intron | 45.0% | |
| ! | TAGAATATGGGGCTTTGGCA+TGG | - | chr5_3:19045523-19045542 | Msa0803730:intron | 45.0% |
| !! | TCTGCTTTTGGACTTCTCCA+TGG | + | chr5_3:19047025-19047044 | None:intergenic | 45.0% |
| ! | CACCCTCTAACTTCTGCTTT+TGG | + | chr5_3:19047037-19047056 | None:intergenic | 45.0% |
| ACAAAGGCAGTCATCAGTTC+CGG | + | chr5_3:19047061-19047080 | None:intergenic | 45.0% | |
| !! | GTCCGACCAAGTTTTAATGC+TGG | - | chr5_3:19047079-19047098 | Msa0803730:intron | 45.0% |
| CTGTTTAACTGCCAATGCCA+GGG | + | chr5_3:19047143-19047162 | None:intergenic | 45.0% | |
| TCTGTTTAACTGCCAATGCC+AGG | + | chr5_3:19047144-19047163 | None:intergenic | 45.0% | |
| AACCTACCTACTGTCACACT+GGG | + | chr5_3:19047420-19047439 | None:intergenic | 45.0% | |
| TAACCTACCTACTGTCACAC+TGG | + | chr5_3:19047421-19047440 | None:intergenic | 45.0% | |
| GTGTGACAGTAGGTAGGTTA+TGG | - | chr5_3:19047421-19047440 | Msa0803730:intron | 45.0% | |
| ! | TACTCAATCATTGGTGCCTC+CGG | + | chr5_3:19047522-19047541 | None:intergenic | 45.0% |
| !!! | TTTTTTATTTTTTTGTATTT+TGG | - | chr5_3:19042603-19042622 | Msa0803730:intron | 5.0% |
| GGTTAGGGAAATGTCTCCGA+CGG | - | chr5_3:19042661-19042680 | Msa0803730:intron | 50.0% | |
| AACTGTCGTCGACGATGGAA+CGG | - | chr5_3:19042714-19042733 | Msa0803730:intron | 50.0% | |
| ! | GAAGGCTACTGAGTTGAGGT+TGG | - | chr5_3:19042829-19042848 | Msa0803730:intron | 50.0% |
| TCAATCACCCGAGAGGGAAA+TGG | - | chr5_3:19042865-19042884 | Msa0803730:intron | 50.0% | |
| ! | ACCCGAGAGGGAAATGGATT+CGG | - | chr5_3:19042871-19042890 | Msa0803730:intron | 50.0% |
| TCCGAATCCATTTCCCTCTC+GGG | + | chr5_3:19042875-19042894 | None:intergenic | 50.0% | |
| GTGGTTTCGGGGAATAAGAG+AGG | - | chr5_3:19042968-19042987 | Msa0803730:intron | 50.0% | |
| !!! | TACCGTTGATGGGTTTTCGC+AGG | - | chr5_3:19043000-19043019 | Msa0803730:intron | 50.0% |
| CACCTGCGAAAACCCATCAA+CGG | + | chr5_3:19043005-19043024 | None:intergenic | 50.0% | |
| GTAGTTCCTCTAGCTGCACA+AGG | + | chr5_3:19043222-19043241 | None:intergenic | 50.0% | |
| TGTGCAGCTAGAGGAACTAC+TGG | - | chr5_3:19043222-19043241 | Msa0803730:intron | 50.0% | |
| ! | TTCTATCGCTGGTTGTGCAC+CGG | - | chr5_3:19043266-19043285 | Msa0803730:intron | 50.0% |
| TGTGACAGGGCACAAGTTGT+TGG | - | chr5_3:19043425-19043444 | Msa0803730:intron | 50.0% | |
| ACAGGGCACAAGTTGTTGGT+TGG | - | chr5_3:19043429-19043448 | Msa0803730:intron | 50.0% | |
| TCCCACTGCACTCTTTGTGA+AGG | - | chr5_3:19043532-19043551 | Msa0803730:intron | 50.0% | |
| ! | GACCTTCACAAAGAGTGCAG+TGG | + | chr5_3:19043537-19043556 | None:intergenic | 50.0% |
| TGGATGGTGCTCCCTATCTT+AGG | - | chr5_3:19043561-19043580 | Msa0803730:intron | 50.0% | |
| TGGTGCTCCCTATCTTAGGA+AGG | - | chr5_3:19043565-19043584 | Msa0803730:intron | 50.0% | |
| TGATGAGTGAGAGCAAGCTG+AGG | - | chr5_3:19043809-19043828 | Msa0803730:intron | 50.0% | |
| GATGAGTGAGAGCAAGCTGA+GGG | - | chr5_3:19043810-19043829 | Msa0803730:intron | 50.0% | |
| ! | AAGCTGAGGGACCTTTTGCA+TGG | - | chr5_3:19043823-19043842 | Msa0803730:intron | 50.0% |
| GATGGAGACTGGATGCTTGT+AGG | - | chr5_3:19043877-19043896 | Msa0803730:intron | 50.0% | |
| TGGAGACTGGATGCTTGTAG+GGG | - | chr5_3:19043879-19043898 | Msa0803730:intron | 50.0% | |
| ! | TTCCAAGGGGGCATACAAGT+AGG | + | chr5_3:19044451-19044470 | None:intergenic | 50.0% |
| TGGTCTTTCGGGACTTCCAA+GGG | + | chr5_3:19044465-19044484 | None:intergenic | 50.0% | |
| ! | TTGGTCTTTCGGGACTTCCA+AGG | + | chr5_3:19044466-19044485 | None:intergenic | 50.0% |
| TGGCTACCGAGAACAACTGA+TGG | - | chr5_3:19044967-19044986 | Msa0803730:intron | 50.0% | |
| GGCTACCGAGAACAACTGAT+GGG | - | chr5_3:19044968-19044987 | Msa0803730:intron | 50.0% | |
| ATGCGCCCATCAGTTGTTCT+CGG | + | chr5_3:19044976-19044995 | None:intergenic | 50.0% | |
| GAAGGGCTGCATAATGTTGC+TGG | - | chr5_3:19045340-19045359 | Msa0803730:intron | 50.0% | |
| ! | AATATGGGGCTTTGGCATGG+AGG | - | chr5_3:19045526-19045545 | Msa0803730:intron | 50.0% |
| ! | ATATGGGGCTTTGGCATGGA+GGG | - | chr5_3:19045527-19045546 | Msa0803730:intron | 50.0% |
| ATGGGACCCACGTAATATGG+TGG | - | chr5_3:19045868-19045887 | Msa0803730:intron | 50.0% | |
| TGGGACCCACGTAATATGGT+GGG | - | chr5_3:19045869-19045888 | Msa0803730:intron | 50.0% | |
| CGTGTCCCACCATATTACGT+GGG | + | chr5_3:19045877-19045896 | None:intergenic | 50.0% | |
| ACGTGTCCCACCATATTACG+TGG | + | chr5_3:19045878-19045897 | None:intergenic | 50.0% | |
| ! | ATGAAGGGTTCTGACGCCAT+TGG | - | chr5_3:19046154-19046173 | Msa0803730:intron | 50.0% |
| ! | TGAAGGGTTCTGACGCCATT+GGG | - | chr5_3:19046155-19046174 | Msa0803730:intron | 50.0% |
| GGTTGACCCAAATCAAAGGC+AGG | + | chr5_3:19046650-19046669 | None:intergenic | 50.0% | |
| !! | AGCAGAAGTTAGAGGGTGTC+CGG | - | chr5_3:19047039-19047058 | Msa0803730:intron | 50.0% |
| GTTGTTCCCAGTGTGACAGT+AGG | - | chr5_3:19047411-19047430 | Msa0803730:intron | 50.0% | |
| TTCCCAGTGTGACAGTAGGT+AGG | - | chr5_3:19047415-19047434 | Msa0803730:intron | 50.0% | |
| TAGGGAAATGTCTCCGACGG+CGG | - | chr5_3:19042664-19042683 | Msa0803730:intron | 55.0% | |
| GAGTTGAGGTTGGGTCTTCC+CGG | - | chr5_3:19042839-19042858 | Msa0803730:intron | 55.0% | |
| CTCTCGGGTGATTGAGATCC+GGG | + | chr5_3:19042860-19042879 | None:intergenic | 55.0% | |
| CCTCTCGGGTGATTGAGATC+CGG | + | chr5_3:19042861-19042880 | None:intergenic | 55.0% | |
| CGGATCTCAATCACCCGAGA+GGG | - | chr5_3:19042859-19042878 | Msa0803730:intron | 55.0% | |
| GTGATGCTATCGCCTAGACC+TGG | - | chr5_3:19043141-19043160 | Msa0803730:intron | 55.0% | |
| ATGCTATCGCCTAGACCTGG+TGG | - | chr5_3:19043144-19043163 | Msa0803730:intron | 55.0% | |
| ! | GAAAGGCCTTGTGCAGCTAG+AGG | - | chr5_3:19043213-19043232 | Msa0803730:intron | 55.0% |
| ! | ACAAAGAGTGCAGTGGGACC+TGG | + | chr5_3:19043530-19043549 | None:intergenic | 55.0% |
| TGTGTAATGGCAGGCCAGTG+TGG | - | chr5_3:19043760-19043779 | Msa0803730:intron | 55.0% | |
| TGCTTGTAGGGGACGTACCA+TGG | - | chr5_3:19043890-19043909 | Msa0803730:intron | 55.0% | |
| GCTTGTAGGGGACGTACCAT+GGG | - | chr5_3:19043891-19043910 | Msa0803730:intron | 55.0% | |
| GTCCTACTTGTATGCCCCCT+TGG | - | chr5_3:19044446-19044465 | Msa0803730:intron | 55.0% | |
| GTCTTTCGGGACTTCCAAGG+GGG | + | chr5_3:19044463-19044482 | None:intergenic | 55.0% | |
| GGTCTTTCGGGACTTCCAAG+GGG | + | chr5_3:19044464-19044483 | None:intergenic | 55.0% | |
| ! | GGTTCTGACGCCATTGGGTT+AGG | - | chr5_3:19046160-19046179 | Msa0803730:intron | 55.0% |
| TTCTTTCCTCCACAGCTCCC+AGG | - | chr5_3:19046998-19047017 | Msa0803730:intron | 55.0% | |
| TCTTTCCTCCACAGCTCCCA+GGG | - | chr5_3:19046999-19047018 | Msa0803730:intron | 55.0% | |
| TTGGACTTCTCCATGGCCCT+GGG | + | chr5_3:19047018-19047037 | None:intergenic | 55.0% | |
| TTTGGACTTCTCCATGGCCC+TGG | + | chr5_3:19047019-19047038 | None:intergenic | 55.0% | |
| ! | CATTGGTGCCTCCGGTGATT+CGG | + | chr5_3:19047514-19047533 | None:intergenic | 55.0% |
| AAAGCAGCAGCAACACTGGC+CGG | + | chr5_3:19047623-19047642 | None:intergenic | 55.0% | |
| GCGCAAACTGTCGTCGACGA+TGG | - | chr5_3:19042709-19042728 | Msa0803730:intron | 60.0% | |
| CCGGATCTCAATCACCCGAG+AGG | - | chr5_3:19042858-19042877 | Msa0803730:intron | 60.0% | |
| !! | GCAGGTGCTGCTTCTATCGC+TGG | - | chr5_3:19043255-19043274 | Msa0803730:intron | 60.0% |
| GAGCTCCATGGGAACCACAC+TGG | + | chr5_3:19043777-19043796 | None:intergenic | 60.0% | |
| TGTGGTTCCCATGGAGCTCC+AGG | - | chr5_3:19043778-19043797 | Msa0803730:intron | 60.0% | |
| TGGGGTGCGGGGAATTCAGT+AGG | - | chr5_3:19045468-19045487 | Msa0803730:intron | 60.0% | |
| GGGGTGCGGGGAATTCAGTA+GGG | - | chr5_3:19045469-19045488 | Msa0803730:intron | 60.0% | |
| GGGTGCGGGGAATTCAGTAG+GGG | - | chr5_3:19045470-19045489 | Msa0803730:intron | 60.0% | |
| GGAAATGTCTCCGACGGCGG+TGG | - | chr5_3:19042667-19042686 | Msa0803730:intron | 65.0% | |
| CGGTGGCTACGGAGGAGGAA+GGG | - | chr5_3:19042684-19042703 | Msa0803730:intron | 65.0% | |
| TGGCTACGGAGGAGGAAGGG+CGG | - | chr5_3:19042687-19042706 | Msa0803730:intron | 65.0% | |
| GCCTAGACCTGGTGGAGCTC+AGG | - | chr5_3:19043152-19043171 | Msa0803730:intron | 65.0% | |
| GCCTGAGCTCCACCAGGTCT+AGG | + | chr5_3:19043156-19043175 | None:intergenic | 65.0% | |
| GCAGGCCAGTGTGGTTCCCA+TGG | - | chr5_3:19043769-19043788 | Msa0803730:intron | 65.0% | |
| GTCTCCGACGGCGGTGGCTA+CGG | - | chr5_3:19042673-19042692 | Msa0803730:intron | 70.0% | |
| TCCTCCGTAGCCACCGCCGT+CGG | + | chr5_3:19042680-19042699 | None:intergenic | 70.0% | |
| GCGGTGGCTACGGAGGAGGA+AGG | - | chr5_3:19042683-19042702 | Msa0803730:intron | 70.0% | |
| GTGCTCGCCTGAGCTCCACC+AGG | + | chr5_3:19043162-19043181 | None:intergenic | 70.0% | |
| CATGGCCCTGGGAGCTGTGG+AGG | + | chr5_3:19047007-19047026 | None:intergenic | 70.0% | |
| CTCCACAGCTCCCAGGGCCA+TGG | - | chr5_3:19047005-19047024 | Msa0803730:intron | 70.0% | |
| CTCCATGGCCCTGGGAGCTG+TGG | + | chr5_3:19047010-19047029 | None:intergenic | 70.0% | |
| TCCGACGGCGGTGGCTACGG+AGG | - | chr5_3:19042676-19042695 | Msa0803730:intron | 75.0% | |
| GACGGCGGTGGCTACGGAGG+AGG | - | chr5_3:19042679-19042698 | Msa0803730:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 19041892 | 19047670 | 19041892 | ID=Msa0803730;Name=Msa0803730 |
| chr5_3 | mRNA | 19041892 | 19047670 | 19041892 | ID=Msa0803730-mRNA-1;Parent=Msa0803730;Name=Msa0803730-mRNA-1;_AED=0.17;_eAED=0.17;_QI=183|0.66|0.85|0.85|0.5|0.42|7|475|377 |
| chr5_3 | exon | 19041892 | 19042549 | 19041892 | ID=Msa0803730-mRNA-1:exon:7840;Parent=Msa0803730-mRNA-1 |
| chr5_3 | exon | 19044832 | 19044874 | 19044832 | ID=Msa0803730-mRNA-1:exon:7839;Parent=Msa0803730-mRNA-1 |
| chr5_3 | exon | 19045648 | 19045789 | 19045648 | ID=Msa0803730-mRNA-1:exon:7838;Parent=Msa0803730-mRNA-1 |
| chr5_3 | exon | 19045900 | 19046129 | 19045900 | ID=Msa0803730-mRNA-1:exon:7837;Parent=Msa0803730-mRNA-1 |
| chr5_3 | exon | 19046267 | 19046451 | 19046267 | ID=Msa0803730-mRNA-1:exon:7836;Parent=Msa0803730-mRNA-1 |
| chr5_3 | exon | 19046541 | 19046930 | 19046541 | ID=Msa0803730-mRNA-1:exon:7835;Parent=Msa0803730-mRNA-1 |
| chr5_3 | exon | 19047527 | 19047670 | 19047527 | ID=Msa0803730-mRNA-1:exon:7834;Parent=Msa0803730-mRNA-1 |
| chr5_3 | five_prime_UTR | 19047527 | 19047670 | 19047527 | ID=Msa0803730-mRNA-1:five_prime_utr;Parent=Msa0803730-mRNA-1 |
| chr5_3 | five_prime_UTR | 19046892 | 19046930 | 19046892 | ID=Msa0803730-mRNA-1:five_prime_utr;Parent=Msa0803730-mRNA-1 |
| chr5_3 | CDS | 19046541 | 19046891 | 19046541 | ID=Msa0803730-mRNA-1:cds;Parent=Msa0803730-mRNA-1 |
| chr5_3 | CDS | 19046267 | 19046451 | 19046267 | ID=Msa0803730-mRNA-1:cds;Parent=Msa0803730-mRNA-1 |
| chr5_3 | CDS | 19045900 | 19046129 | 19045900 | ID=Msa0803730-mRNA-1:cds;Parent=Msa0803730-mRNA-1 |
| chr5_3 | CDS | 19045648 | 19045789 | 19045648 | ID=Msa0803730-mRNA-1:cds;Parent=Msa0803730-mRNA-1 |
| chr5_3 | CDS | 19044832 | 19044874 | 19044832 | ID=Msa0803730-mRNA-1:cds;Parent=Msa0803730-mRNA-1 |
| chr5_3 | CDS | 19042367 | 19042549 | 19042367 | ID=Msa0803730-mRNA-1:cds;Parent=Msa0803730-mRNA-1 |
| chr5_3 | three_prime_UTR | 19041892 | 19042366 | 19041892 | ID=Msa0803730-mRNA-1:three_prime_utr;Parent=Msa0803730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
