Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841820 | XP_003612933.1 | 94.864 | 331 | 17 | 0 | 1 | 331 | 1 | 331 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841820 | sp|Q38826|IAA8_ARATH | 66.771 | 319 | 74 | 9 | 21 | 331 | 21 | 315 | 3.49e-135 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841820 | G7KF56 | 94.864 | 331 | 17 | 0 | 1 | 331 | 1 | 331 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0841820 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0677530 | Msa0841820 | 0.819115 | 1.376133e-52 | -8.615850e-47 |
| Msa0720690 | Msa0841820 | 0.868836 | 4.854059e-66 | -8.615850e-47 |
| Msa0761270 | Msa0841820 | 0.853543 | 2.229628e-61 | -8.615850e-47 |
| Msa0803730 | Msa0841820 | 0.908516 | 1.570559e-81 | -8.615850e-47 |
| Msa0841820 | Msa1228040 | 0.822783 | 1.969137e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841820 | MtrunA17_Chr5g0411501 | 94.864 | 331 | 17 | 0 | 1 | 331 | 1 | 331 | 0.0 | 654 |
| Msa0841820 | MtrunA17_Chr8g0366881 | 70.339 | 354 | 72 | 6 | 1 | 331 | 1 | 344 | 2.97e-173 | 487 |
| Msa0841820 | MtrunA17_Chr5g0428141 | 58.951 | 324 | 107 | 11 | 21 | 331 | 33 | 343 | 6.06e-113 | 333 |
| Msa0841820 | MtrunA17_Chr2g0331411 | 50.287 | 348 | 115 | 10 | 16 | 331 | 1 | 322 | 9.71e-100 | 299 |
| Msa0841820 | MtrunA17_Chr6g0486121 | 54.545 | 275 | 78 | 6 | 51 | 324 | 15 | 243 | 6.79e-90 | 271 |
| Msa0841820 | MtrunA17_Chr8g0390281 | 49.508 | 305 | 112 | 8 | 40 | 330 | 12 | 288 | 4.25e-87 | 266 |
| Msa0841820 | MtrunA17_Chr1g0190711 | 46.127 | 284 | 99 | 9 | 51 | 330 | 15 | 248 | 1.18e-64 | 206 |
| Msa0841820 | MtrunA17_Chr1g0187921 | 46.545 | 275 | 89 | 7 | 51 | 324 | 8 | 225 | 1.30e-63 | 203 |
| Msa0841820 | MtrunA17_Chr1g0184791 | 61.212 | 165 | 58 | 3 | 170 | 330 | 78 | 240 | 1.32e-61 | 198 |
| Msa0841820 | MtrunA17_Chr7g0260641 | 62.416 | 149 | 53 | 2 | 176 | 324 | 94 | 239 | 6.23e-60 | 194 |
| Msa0841820 | MtrunA17_Chr1g0184801 | 39.643 | 280 | 80 | 9 | 48 | 324 | 9 | 202 | 2.62e-51 | 171 |
| Msa0841820 | MtrunA17_Chr1g0187961 | 45.263 | 190 | 70 | 5 | 134 | 323 | 23 | 178 | 2.60e-47 | 159 |
| Msa0841820 | MtrunA17_Chr1g0166011 | 37.184 | 277 | 83 | 8 | 51 | 327 | 1 | 186 | 3.11e-46 | 157 |
| Msa0841820 | MtrunA17_Chr7g0260621 | 39.427 | 279 | 87 | 10 | 46 | 324 | 6 | 202 | 9.35e-46 | 156 |
| Msa0841820 | MtrunA17_Chr1g0183251 | 44.068 | 177 | 67 | 6 | 180 | 324 | 81 | 257 | 1.34e-34 | 129 |
| Msa0841820 | MtrunA17_Chr4g0004181 | 48.408 | 157 | 48 | 5 | 179 | 332 | 52 | 178 | 5.89e-34 | 124 |
| Msa0841820 | MtrunA17_Chr8g0340731 | 38.614 | 202 | 101 | 6 | 151 | 329 | 69 | 270 | 9.77e-34 | 126 |
| Msa0841820 | MtrunA17_Chr2g0330951 | 38.710 | 186 | 92 | 4 | 163 | 327 | 78 | 262 | 3.28e-32 | 122 |
| Msa0841820 | MtrunA17_Chr2g0332141 | 50.476 | 105 | 40 | 3 | 217 | 318 | 8 | 103 | 1.20e-29 | 111 |
| Msa0841820 | MtrunA17_Chr4g0069561 | 34.000 | 150 | 66 | 5 | 175 | 318 | 60 | 182 | 1.85e-19 | 85.5 |
| Msa0841820 | MtrunA17_Chr3g0137601 | 29.518 | 166 | 84 | 4 | 162 | 319 | 69 | 209 | 8.52e-19 | 84.3 |
| Msa0841820 | MtrunA17_Chr1g0193861 | 41.818 | 110 | 49 | 3 | 214 | 323 | 82 | 176 | 1.18e-17 | 80.1 |
| Msa0841820 | MtrunA17_Chr7g0270851 | 41.176 | 102 | 46 | 2 | 215 | 316 | 68 | 155 | 1.33e-16 | 76.6 |
| Msa0841820 | MtrunA17_Chr4g0064131 | 28.105 | 153 | 84 | 3 | 166 | 316 | 77 | 205 | 3.45e-14 | 71.2 |
| Msa0841820 | MtrunA17_Chr1g0209181 | 28.302 | 159 | 87 | 5 | 159 | 316 | 36 | 168 | 1.71e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0841820 | AT2G22670.3 | 66.771 | 319 | 74 | 9 | 21 | 331 | 21 | 315 | 3.55e-136 | 392 |
| Msa0841820 | AT2G22670.1 | 66.771 | 319 | 74 | 9 | 21 | 331 | 21 | 315 | 3.55e-136 | 392 |
| Msa0841820 | AT2G22670.4 | 66.771 | 319 | 74 | 9 | 21 | 331 | 38 | 332 | 4.22e-136 | 392 |
| Msa0841820 | AT2G22670.5 | 66.458 | 319 | 73 | 10 | 21 | 331 | 21 | 313 | 2.94e-134 | 387 |
| Msa0841820 | AT2G22670.2 | 66.458 | 319 | 73 | 10 | 21 | 331 | 21 | 313 | 2.94e-134 | 387 |
| Msa0841820 | AT5G65670.2 | 58.642 | 324 | 113 | 6 | 13 | 331 | 25 | 332 | 5.61e-124 | 362 |
| Msa0841820 | AT5G65670.1 | 59.306 | 317 | 108 | 6 | 13 | 324 | 25 | 325 | 1.39e-123 | 360 |
| Msa0841820 | AT4G29080.1 | 47.840 | 324 | 122 | 8 | 16 | 324 | 3 | 294 | 5.65e-87 | 266 |
| Msa0841820 | AT4G14550.1 | 45.620 | 274 | 92 | 5 | 51 | 324 | 1 | 217 | 1.43e-67 | 214 |
| Msa0841820 | AT4G14550.2 | 46.182 | 275 | 89 | 6 | 51 | 324 | 1 | 217 | 7.60e-67 | 212 |
| Msa0841820 | AT3G04730.1 | 42.708 | 288 | 87 | 6 | 51 | 324 | 2 | 225 | 2.03e-63 | 203 |
| Msa0841820 | AT1G04250.1 | 42.958 | 284 | 96 | 8 | 49 | 330 | 5 | 224 | 9.04e-63 | 201 |
| Msa0841820 | AT3G23050.1 | 43.509 | 285 | 91 | 8 | 51 | 324 | 6 | 231 | 3.44e-61 | 197 |
| Msa0841820 | AT4G14550.3 | 44.444 | 252 | 83 | 6 | 51 | 302 | 1 | 195 | 2.22e-54 | 178 |
| Msa0841820 | AT3G23050.2 | 41.667 | 264 | 84 | 8 | 51 | 303 | 6 | 210 | 4.73e-48 | 162 |
| Msa0841820 | AT1G04240.1 | 54.248 | 153 | 49 | 4 | 175 | 327 | 58 | 189 | 3.61e-47 | 159 |
| Msa0841820 | AT1G04240.2 | 54.248 | 153 | 49 | 4 | 175 | 327 | 158 | 289 | 2.39e-46 | 160 |
| Msa0841820 | AT5G43700.1 | 49.673 | 153 | 54 | 4 | 175 | 327 | 56 | 185 | 2.51e-42 | 147 |
| Msa0841820 | AT3G23030.1 | 51.007 | 149 | 41 | 3 | 175 | 323 | 54 | 170 | 4.54e-40 | 140 |
| Msa0841820 | AT3G23030.2 | 51.007 | 149 | 41 | 3 | 175 | 323 | 141 | 257 | 2.09e-39 | 141 |
| Msa0841820 | AT2G33310.3 | 44.444 | 180 | 71 | 4 | 166 | 324 | 60 | 231 | 7.24e-37 | 134 |
| Msa0841820 | AT2G33310.1 | 44.444 | 180 | 71 | 4 | 166 | 324 | 60 | 231 | 7.24e-37 | 134 |
| Msa0841820 | AT4G28640.1 | 43.820 | 178 | 73 | 4 | 166 | 324 | 73 | 242 | 2.08e-36 | 133 |
| Msa0841820 | AT4G28640.3 | 43.750 | 176 | 72 | 4 | 166 | 322 | 73 | 240 | 3.72e-36 | 132 |
| Msa0841820 | AT2G33310.2 | 44.751 | 181 | 70 | 5 | 166 | 324 | 60 | 232 | 7.15e-36 | 132 |
| Msa0841820 | AT1G15580.1 | 44.828 | 145 | 49 | 2 | 174 | 318 | 46 | 159 | 8.99e-36 | 129 |
| Msa0841820 | AT1G52830.1 | 40.000 | 170 | 74 | 4 | 156 | 325 | 45 | 186 | 1.97e-35 | 129 |
| Msa0841820 | AT4G28640.2 | 44.767 | 172 | 76 | 4 | 166 | 322 | 73 | 240 | 2.06e-35 | 132 |
| Msa0841820 | AT1G04550.2 | 42.778 | 180 | 73 | 4 | 166 | 324 | 54 | 224 | 8.13e-35 | 129 |
| Msa0841820 | AT3G15540.1 | 44.785 | 163 | 64 | 4 | 164 | 325 | 53 | 190 | 1.62e-34 | 127 |
| Msa0841820 | AT4G14560.1 | 48.276 | 145 | 45 | 3 | 176 | 320 | 50 | 164 | 3.36e-33 | 122 |
| Msa0841820 | AT4G14550.4 | 40.580 | 207 | 66 | 5 | 51 | 256 | 1 | 151 | 1.32e-32 | 121 |
| Msa0841820 | AT3G16500.1 | 39.394 | 165 | 80 | 4 | 182 | 330 | 104 | 264 | 1.89e-30 | 118 |
| Msa0841820 | AT3G16500.2 | 40.523 | 153 | 72 | 3 | 182 | 319 | 104 | 252 | 6.22e-30 | 116 |
| Msa0841820 | AT1G04100.1 | 39.412 | 170 | 73 | 5 | 183 | 326 | 95 | 260 | 2.40e-29 | 115 |
| Msa0841820 | AT1G51950.1 | 38.608 | 158 | 73 | 4 | 182 | 319 | 97 | 250 | 5.68e-27 | 108 |
| Msa0841820 | AT3G23050.3 | 36.866 | 217 | 69 | 7 | 51 | 256 | 6 | 165 | 4.20e-26 | 103 |
| Msa0841820 | AT5G25890.1 | 39.310 | 145 | 65 | 3 | 180 | 324 | 47 | 168 | 4.73e-26 | 103 |
| Msa0841820 | AT3G17600.1 | 36.774 | 155 | 68 | 6 | 164 | 316 | 28 | 154 | 1.05e-23 | 96.7 |
| Msa0841820 | AT3G62100.1 | 43.137 | 102 | 43 | 2 | 215 | 316 | 82 | 168 | 1.41e-19 | 85.9 |
| Msa0841820 | AT2G46990.1 | 40.385 | 104 | 47 | 1 | 215 | 318 | 84 | 172 | 4.51e-19 | 84.3 |
| Msa0841820 | AT3G62100.2 | 41.573 | 89 | 37 | 2 | 215 | 303 | 82 | 155 | 3.65e-14 | 70.1 |
| Msa0841820 | AT2G46990.2 | 38.202 | 89 | 40 | 1 | 215 | 303 | 84 | 157 | 2.62e-13 | 67.8 |
| Msa0841820 | AT1G15050.2 | 37.143 | 105 | 50 | 1 | 217 | 321 | 62 | 150 | 6.11e-13 | 66.6 |
| Msa0841820 | AT1G15050.1 | 37.143 | 105 | 50 | 1 | 217 | 321 | 94 | 182 | 1.43e-12 | 66.2 |
| Msa0841820 | AT4G32280.2 | 29.703 | 101 | 51 | 2 | 216 | 316 | 118 | 198 | 5.38e-12 | 65.1 |
| Msa0841820 | AT4G32280.1 | 24.581 | 179 | 84 | 4 | 169 | 316 | 82 | 240 | 6.64e-12 | 65.5 |
| Msa0841820 | AT1G04550.1 | 36.842 | 114 | 51 | 3 | 166 | 258 | 54 | 167 | 1.05e-11 | 63.5 |
| Msa0841820 | AT2G01200.2 | 33.333 | 126 | 64 | 2 | 196 | 321 | 83 | 188 | 1.21e-11 | 63.9 |
| Msa0841820 | AT2G01200.1 | 33.333 | 126 | 64 | 2 | 196 | 321 | 83 | 188 | 1.21e-11 | 63.9 |
Find 142 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTCATCATTGTTGTTCT+TGG | 0.148811 | 5_4:+18558593 | None:intergenic |
| CAACTAAAATACACTTCTTT+TGG | 0.250694 | 5_4:+18555323 | None:intergenic |
| TTGCAGAAGAATGTGGTTTC+GGG | 0.253040 | 5_4:-18559132 | Msa0841820:CDS |
| GGTAAGTTTAATGCTAATTC+AGG | 0.253741 | 5_4:-18558977 | Msa0841820:CDS |
| TTGGCAGTTAAACAGATTTC+CGG | 0.294828 | 5_4:-18554958 | Msa0841820:CDS |
| TAGATCTACTTTCCTAAGAT+AGG | 0.295417 | 5_4:+18558515 | None:intergenic |
| CACCCTCTAACTTCTGCTTT+TGG | 0.299819 | 5_4:+18555072 | None:intergenic |
| GGTAACTTCACAAGATATTA+TGG | 0.324821 | 5_4:+18554888 | None:intergenic |
| ATGAATTATTATCGTATTAC+CGG | 0.344319 | 5_4:-18554504 | Msa0841820:three_prime_UTR |
| GTGAAGTCTGTAATCACTAT+AGG | 0.346731 | 5_4:-18554848 | Msa0841820:three_prime_UTR |
| TTTGGACTTCTCCATGGCCC+TGG | 0.349497 | 5_4:+18555090 | None:intergenic |
| TTTGCAGAAGAATGTGGTTT+CGG | 0.361512 | 5_4:-18559133 | Msa0841820:CDS |
| GAGTTGAGGTTGGGTCTTCC+CGG | 0.364318 | 5_4:-18559249 | Msa0841820:CDS |
| TGGATGGTGCTCCCTATCTT+AGG | 0.366786 | 5_4:-18558527 | Msa0841820:CDS |
| GGCCTCCTATAAGATCATTT+AGG | 0.368510 | 5_4:-18558638 | Msa0841820:CDS |
| TTAAGCAGAGAAAGAAAGAA+AGG | 0.393981 | 5_4:+18560161 | None:intergenic |
| GGTTCTGACGCCATTGGGTT+AGG | 0.402217 | 5_4:-18555943 | Msa0841820:intron |
| TTGGACTTCTCCATGGCCCT+GGG | 0.402537 | 5_4:+18555091 | None:intergenic |
| TTCTTTCCTCCACAGCTCCC+AGG | 0.411801 | 5_4:-18555108 | Msa0841820:intron |
| GATGGAGACTGGATGCTTGT+AGG | 0.411867 | 5_4:-18558214 | Msa0841820:CDS |
| TTCAATTCATCCAAGCAAAC+AGG | 0.412320 | 5_4:+18554821 | None:intergenic |
| AAAAGTGAACTTGAATTTGA+AGG | 0.413246 | 5_4:-18559277 | Msa0841820:CDS |
| AAGGCTACTGAGTTGAGGTT+GGG | 0.419598 | 5_4:-18559258 | Msa0841820:CDS |
| GGATTTGCTGATACCGTTGA+TGG | 0.420125 | 5_4:-18559099 | Msa0841820:CDS |
| TCAATCACCCGAGAGGGAAA+TGG | 0.422310 | 5_4:-18559223 | Msa0841820:CDS |
| AACGAATGTTGTTCACGATT+AGG | 0.423108 | 5_4:+18554737 | None:intergenic |
| GTCTCCGACGGCGGTGGCTA+CGG | 0.424136 | 5_4:-18559415 | Msa0841820:CDS |
| TGATCTTGATACTCAATCAT+TGG | 0.426305 | 5_4:+18554577 | None:intergenic |
| GACGATGGAACGGAATTACT+TGG | 0.426582 | 5_4:-18559364 | Msa0841820:CDS |
| CCTTTACTTCCTGCAAAAGA+TGG | 0.428383 | 5_4:-18559156 | Msa0841820:CDS |
| ATGGAGACTGGATGCTTGTA+GGG | 0.429252 | 5_4:-18558213 | Msa0841820:CDS |
| TATAGGAAAACCTGTTTGCT+TGG | 0.431666 | 5_4:-18554831 | Msa0841820:three_prime_UTR |
| AGGAACTACTGGTCATAATC+AGG | 0.436346 | 5_4:-18558855 | Msa0841820:CDS |
| TACTCAATCATTGGTGCCTC+CGG | 0.437173 | 5_4:+18554586 | None:intergenic |
| ACAAATATAACAAACTTTCA+AGG | 0.437406 | 5_4:+18554916 | None:intergenic |
| ACAAAGGCAGTCATCAGTTC+CGG | 0.440575 | 5_4:+18555048 | None:intergenic |
| CTCTCGGGTGATTGAGATCC+GGG | 0.441176 | 5_4:+18559231 | None:intergenic |
| TGAAGGGTTCTGACGCCATT+GGG | 0.446469 | 5_4:-18555948 | Msa0841820:CDS |
| ATCCGAATCCATTTCCCTCT+CGG | 0.452945 | 5_4:+18559215 | None:intergenic |
| TCCGAATCCATTTCCCTCTC+GGG | 0.455237 | 5_4:+18559216 | None:intergenic |
| ACCCGAGAGGGAAATGGATT+CGG | 0.455743 | 5_4:-18559217 | Msa0841820:CDS |
| CCTCTCGGGTGATTGAGATC+CGG | 0.459016 | 5_4:+18559230 | None:intergenic |
| TGTGGTTCCCATGGAGCTCC+AGG | 0.460461 | 5_4:-18558313 | Msa0841820:CDS |
| CTTTCCTGCAAAACCTTACT+CGG | 0.461106 | 5_4:+18558893 | None:intergenic |
| CTCCACAGCTCCCAGGGCCA+TGG | 0.461661 | 5_4:-18555101 | Msa0841820:intron |
| AGCAGAAGTTAGAGGGTGTC+CGG | 0.462111 | 5_4:-18555067 | Msa0841820:CDS |
| GCCTAGACCTGGTGGAGCTC+AGG | 0.463855 | 5_4:-18558936 | Msa0841820:CDS |
| GCAGGTGCTGCTTCTATCGC+TGG | 0.467925 | 5_4:-18558833 | Msa0841820:CDS |
| AGTCCAAAAGCAGAAGTTAG+AGG | 0.470080 | 5_4:-18555075 | Msa0841820:CDS |
| CAGAAGGCTGAAAATAATGA+AGG | 0.471961 | 5_4:-18555965 | Msa0841820:CDS |
| ATGAAGGGTTCTGACGCCAT+TGG | 0.475878 | 5_4:-18555949 | Msa0841820:CDS |
| GCCTGAGCTCCACCAGGTCT+AGG | 0.476166 | 5_4:+18558935 | None:intergenic |
| TCTGTTTAACTGCCAATGCC+AGG | 0.477629 | 5_4:+18554965 | None:intergenic |
| TCTTTCCTCCACAGCTCCCA+GGG | 0.484683 | 5_4:-18555107 | Msa0841820:intron |
| GAAGGCTACTGAGTTGAGGT+TGG | 0.492437 | 5_4:-18559259 | Msa0841820:CDS |
| GTAAGTTTAATGCTAATTCA+GGG | 0.493399 | 5_4:-18558976 | Msa0841820:CDS |
| AGATCTACTTTCCTAAGATA+GGG | 0.496829 | 5_4:+18558516 | None:intergenic |
| TATGACTAATTCCCTGGCAT+TGG | 0.497535 | 5_4:-18554977 | Msa0841820:CDS |
| GACGGCGGTGGCTACGGAGG+AGG | 0.499617 | 5_4:-18559409 | Msa0841820:CDS |
| AGTGAAAGAAATGCCGAGTA+AGG | 0.502631 | 5_4:-18558906 | Msa0841820:CDS |
| ACAAAGAGTGCAGTGGGACC+TGG | 0.505055 | 5_4:+18558561 | None:intergenic |
| GTGGTTTCGGGGAATAAGAG+AGG | 0.508267 | 5_4:-18559120 | Msa0841820:CDS |
| TTCCTAAATGATCTTATAGG+AGG | 0.509027 | 5_4:+18558636 | None:intergenic |
| GCAGGCCAGTGTGGTTCCCA+TGG | 0.511832 | 5_4:-18558322 | Msa0841820:intron |
| CATATTCTGAACCATGCAAA+AGG | 0.516368 | 5_4:+18558257 | None:intergenic |
| TGCTTGTAGGGGACGTACCA+TGG | 0.519764 | 5_4:-18558201 | Msa0841820:CDS |
| AAGGATTATGACTAATTCCC+TGG | 0.522985 | 5_4:-18554983 | Msa0841820:CDS |
| TTGGATCCAGCATTAAAACT+TGG | 0.523457 | 5_4:+18555021 | None:intergenic |
| TTCTATCGCTGGTTGTGCAC+CGG | 0.524204 | 5_4:-18558822 | Msa0841820:CDS |
| TGTGACAGGGCACAAGTTGT+TGG | 0.524224 | 5_4:-18558663 | Msa0841820:intron |
| AAATAAAGCAGCAGCAACAC+TGG | 0.527045 | 5_4:+18554481 | None:intergenic |
| CAAGAACAACAATGATGAAG+TGG | 0.532840 | 5_4:-18558592 | Msa0841820:CDS |
| CTCACTTATGAAGATAAAGA+TGG | 0.536028 | 5_4:-18558232 | Msa0841820:CDS |
| ATTGTTGTTCTTGGAAGCGT+TGG | 0.536259 | 5_4:+18558602 | None:intergenic |
| ACCTTCACAAAGAGTGCAGT+GGG | 0.538673 | 5_4:+18558555 | None:intergenic |
| GGAAATGTCTCCGACGGCGG+TGG | 0.539855 | 5_4:-18559421 | Msa0841820:exon |
| GCGGTGGCTACGGAGGAGGA+AGG | 0.542724 | 5_4:-18559405 | Msa0841820:CDS |
| ATGAAGATAAAGATGGAGAC+TGG | 0.547731 | 5_4:-18558225 | Msa0841820:CDS |
| CAAATATAACAAACTTTCAA+GGG | 0.548651 | 5_4:+18554917 | None:intergenic |
| GGGATTGTCTGATTGTTCAT+CGG | 0.548946 | 5_4:-18559343 | Msa0841820:CDS |
| AACAGCTGAACATCTTCTCA+AGG | 0.549658 | 5_4:+18558457 | None:intergenic |
| TAACCTACCTACTGTCACAC+TGG | 0.550217 | 5_4:+18554687 | None:intergenic |
| GAGCTCCATGGGAACCACAC+TGG | 0.553553 | 5_4:+18558317 | None:intergenic |
| GATGAAGTGGATGGAAAACC+AGG | 0.553790 | 5_4:-18558579 | Msa0841820:CDS |
| TGTGCAGCTAGAGGAACTAC+TGG | 0.555927 | 5_4:-18558866 | Msa0841820:CDS |
| AAAGCAGCAGCAACACTGGC+CGG | 0.558554 | 5_4:+18554485 | None:intergenic |
| GTGCTCGCCTGAGCTCCACC+AGG | 0.561039 | 5_4:+18558929 | None:intergenic |
| GCTTGTAGGGGACGTACCAT+GGG | 0.563761 | 5_4:-18558200 | Msa0841820:CDS |
| GTCCAAAAGCAGAAGTTAGA+GGG | 0.564866 | 5_4:-18555074 | Msa0841820:CDS |
| GATTTGCTGATACCGTTGAT+GGG | 0.566751 | 5_4:-18559098 | Msa0841820:CDS |
| TTTGTGAAGGTCAGCATGGA+TGG | 0.570866 | 5_4:-18558543 | Msa0841820:CDS |
| GCAGGAAGTAAAGGGAACAA+TGG | 0.573981 | 5_4:+18559165 | None:intergenic |
| ACAGGGCACAAGTTGTTGGT+TGG | 0.575157 | 5_4:-18558659 | Msa0841820:intron |
| AGATGGTTTGCAGAAGAATG+TGG | 0.577585 | 5_4:-18559139 | Msa0841820:CDS |
| ATGGCTGTTCAAAATGAGCA+AGG | 0.578648 | 5_4:-18554665 | Msa0841820:three_prime_UTR |
| GAATGTTGTTCACGATTAGG+AGG | 0.579103 | 5_4:+18554740 | None:intergenic |
| GCGCAAACTGTCGTCGACGA+TGG | 0.579580 | 5_4:-18559379 | Msa0841820:CDS |
| CTGTTTAACTGCCAATGCCA+GGG | 0.580602 | 5_4:+18554966 | None:intergenic |
| TAAAGAACATCTTACTCCCA+TGG | 0.581718 | 5_4:+18558184 | None:intergenic |
| TCCTCCGTAGCCACCGCCGT+CGG | 0.586598 | 5_4:+18559411 | None:intergenic |
| CGGTGGCTACGGAGGAGGAA+GGG | 0.593859 | 5_4:-18559404 | Msa0841820:CDS |
| ACTACTGGTCATAATCAGGC+AGG | 0.595833 | 5_4:-18558851 | Msa0841820:CDS |
| ACGATGGAACGGAATTACTT+GGG | 0.597669 | 5_4:-18559363 | Msa0841820:CDS |
| CGGATCTCAATCACCCGAGA+GGG | 0.597943 | 5_4:-18559229 | Msa0841820:CDS |
| GATTAGGAGGAAAGAAAGAG+TGG | 0.599330 | 5_4:+18554753 | None:intergenic |
| ATCCAGCATTAAAACTTGGT+CGG | 0.599466 | 5_4:+18555025 | None:intergenic |
| AACTGTCGTCGACGATGGAA+CGG | 0.600872 | 5_4:-18559374 | Msa0841820:CDS |
| TCCCACTGCACTCTTTGTGA+AGG | 0.601153 | 5_4:-18558556 | Msa0841820:CDS |
| AACAACAATGATGAAGTGGA+TGG | 0.601893 | 5_4:-18558588 | Msa0841820:CDS |
| TAGGGAAATGTCTCCGACGG+CGG | 0.603529 | 5_4:-18559424 | Msa0841820:exon |
| GGTTGCTTTAGTTGTGAACA+AGG | 0.607849 | 5_4:-18554643 | Msa0841820:three_prime_UTR |
| ATTAAAACTTGGTCGGACAA+AGG | 0.611249 | 5_4:+18555032 | None:intergenic |
| TCCGACGGCGGTGGCTACGG+AGG | 0.612859 | 5_4:-18559412 | Msa0841820:CDS |
| ATTGTCTGATTGTTCATCGG+TGG | 0.613259 | 5_4:-18559340 | Msa0841820:CDS |
| TGATGAGTGAGAGCAAGCTG+AGG | 0.616205 | 5_4:-18558282 | Msa0841820:CDS |
| ATGCTATCGCCTAGACCTGG+TGG | 0.616679 | 5_4:-18558944 | Msa0841820:CDS |
| GTTGTTCCCAGTGTGACAGT+AGG | 0.619878 | 5_4:-18554694 | Msa0841820:three_prime_UTR |
| TGCAGAAGAATGTGGTTTCG+GGG | 0.623774 | 5_4:-18559131 | Msa0841820:CDS |
| GACGTAACAATAAATAACAC+CGG | 0.626772 | 5_4:+18554939 | None:intergenic |
| GTGATGCTATCGCCTAGACC+TGG | 0.627514 | 5_4:-18558947 | Msa0841820:CDS |
| GATGAGTGAGAGCAAGCTGA+GGG | 0.627937 | 5_4:-18558281 | Msa0841820:CDS |
| TGGCTACGGAGGAGGAAGGG+CGG | 0.628102 | 5_4:-18559401 | Msa0841820:CDS |
| GAAAGGCCTTGTGCAGCTAG+AGG | 0.628138 | 5_4:-18558875 | Msa0841820:CDS |
| AACCTACCTACTGTCACACT+GGG | 0.632469 | 5_4:+18554688 | None:intergenic |
| TGGCTGTTCAAAATGAGCAA+GGG | 0.632524 | 5_4:-18554664 | Msa0841820:three_prime_UTR |
| AGAAGGCTGAAAATAATGAA+GGG | 0.637227 | 5_4:-18555964 | Msa0841820:CDS |
| TGTTCATTGATACTTGCAGA+AGG | 0.637954 | 5_4:-18555981 | Msa0841820:CDS |
| ATTTGAAGGCTACTGAGTTG+AGG | 0.639042 | 5_4:-18559263 | Msa0841820:CDS |
| GACCTTCACAAAGAGTGCAG+TGG | 0.642687 | 5_4:+18558554 | None:intergenic |
| CACCTGCGAAAACCCATCAA+CGG | 0.645296 | 5_4:+18559086 | None:intergenic |
| TGTGTAATGGCAGGCCAGTG+TGG | 0.646395 | 5_4:-18558331 | Msa0841820:intron |
| GGTTAGGGAAATGTCTCCGA+CGG | 0.647341 | 5_4:-18559427 | Msa0841820:exon |
| TTCCCAGTGTGACAGTAGGT+AGG | 0.650164 | 5_4:-18554690 | Msa0841820:three_prime_UTR |
| ACAGCTGAACATCTTCTCAA+GGG | 0.651538 | 5_4:+18558458 | None:intergenic |
| TGGAGACTGGATGCTTGTAG+GGG | 0.651918 | 5_4:-18558212 | Msa0841820:CDS |
| ATTAGGAGGAAAGAAAGAGT+GGG | 0.654434 | 5_4:+18554754 | None:intergenic |
| GTAGTTCCTCTAGCTGCACA+AGG | 0.655154 | 5_4:+18558869 | None:intergenic |
| ACTCTTTGTGAAGGTCAGCA+TGG | 0.660309 | 5_4:-18558547 | Msa0841820:CDS |
| ACAATGTTAGAACTGTATGT+TGG | 0.668686 | 5_4:+18554786 | None:intergenic |
| AGAACACATACCTAACCCAA+TGG | 0.669918 | 5_4:+18555933 | None:intergenic |
| GTAGATTGTGAAGTGAACTG+TGG | 0.689026 | 5_4:-18559460 | Msa0841820:intron |
| CCGGATCTCAATCACCCGAG+AGG | 0.692711 | 5_4:-18559230 | Msa0841820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCATTTTTTTAGTA+AGG | - | chr5_4:18554610-18554629 | Msa0841820:three_prime_UTR | 10.0% |
| !!! | TTTTTTCATTTTTTTAGTAA+GGG | - | chr5_4:18554611-18554630 | Msa0841820:three_prime_UTR | 10.0% |
| !!! | TTTTTCAATTTAAAATTTCA+TGG | - | chr5_4:18554965-18554984 | Msa0841820:CDS | 10.0% |
| !!! | TTGATTTTTTTTTTGTATTT+TGG | - | chr5_4:18555163-18555182 | Msa0841820:intron | 10.0% |
| !!! | TAATTTTTAATCGAAAATTA+GGG | - | chr5_4:18557490-18557509 | Msa0841820:intron | 10.0% |
| !! | TTGTTTAAATTGCTTATTAA+TGG | - | chr5_4:18555008-18555027 | Msa0841820:CDS | 15.0% |
| !!! | TTAGTTTTTAGTTAGTTTTT+TGG | - | chr5_4:18555127-18555146 | Msa0841820:intron | 15.0% |
| !!! | ATTTTTTTTTTGTATTTTGG+TGG | - | chr5_4:18555166-18555185 | Msa0841820:intron | 15.0% |
| !! | ACAAATTAAGAAATACAAAA+AGG | - | chr5_4:18556742-18556761 | Msa0841820:intron | 15.0% |
| !! | ATCTTATATTCAAATATTGT+TGG | - | chr5_4:18557114-18557133 | Msa0841820:intron | 15.0% |
| !! | TCTTATATTCAAATATTGTT+GGG | - | chr5_4:18557115-18557134 | Msa0841820:intron | 15.0% |
| !!! | GTAATTTTTAATCGAAAATT+AGG | - | chr5_4:18557489-18557508 | Msa0841820:intron | 15.0% |
| !!! | AATTTTTAATCGAAAATTAG+GGG | - | chr5_4:18557491-18557510 | Msa0841820:intron | 15.0% |
| !!! | TATTTTTTTTGAAGAAATTC+AGG | - | chr5_4:18558224-18558243 | Msa0841820:CDS | 15.0% |
| !!! | TATTATAGTTCTGTAATTTA+CGG | - | chr5_4:18558516-18558535 | Msa0841820:CDS | 15.0% |
| !! | TCACAAAAACTAATATTAAA+AGG | + | chr5_4:18559784-18559803 | None:intergenic | 15.0% |
| !!! | GCTTTAAAAACAAACATAAA+TGG | + | chr5_4:18554908-18554927 | None:intergenic | 20.0% |
| !! | AATAAGCAATTTAAACAACA+AGG | + | chr5_4:18555006-18555025 | None:intergenic | 20.0% |
| !!! | TTTAGTTAGTTTTTTGGTAT+TGG | - | chr5_4:18555133-18555152 | Msa0841820:intron | 20.0% |
| !!! | TTTACAATATTTGTTATGCA+GGG | - | chr5_4:18555650-18555669 | Msa0841820:intron | 20.0% |
| !! | ATATGAAAATTTACCATATC+AGG | + | chr5_4:18555966-18555985 | None:intergenic | 20.0% |
| !!! | TTTTTCCTAAATGATCTTAT+AGG | + | chr5_4:18556018-18556037 | None:intergenic | 20.0% |
| !!! | TATTTTTGTTCTGAAATCTT+TGG | - | chr5_4:18556290-18556309 | Msa0841820:intron | 20.0% |
| !!! | TGTATTTCTTAATTTGTATG+CGG | + | chr5_4:18556739-18556758 | None:intergenic | 20.0% |
| !!! | GTAATATATTCTACTTTTGT+AGG | + | chr5_4:18556824-18556843 | None:intergenic | 20.0% |
| !!! | ATTTTTAATCGAAAATTAGG+GGG | - | chr5_4:18557492-18557511 | Msa0841820:intron | 20.0% |
| !!! | ATAACTTTGCTTTCTAAAAA+GGG | + | chr5_4:18557676-18557695 | None:intergenic | 20.0% |
| !!! | AATAACTTTGCTTTCTAAAA+AGG | + | chr5_4:18557677-18557696 | None:intergenic | 20.0% |
| !!! | ATTATAGTTCTGTAATTTAC+GGG | - | chr5_4:18558517-18558536 | Msa0841820:CDS | 20.0% |
| !! | TGTGGAGTAATTAATTAAAA+TGG | - | chr5_4:18558788-18558807 | Msa0841820:intron | 20.0% |
| !! | ATATCGACATAATGTTTATT+TGG | + | chr5_4:18559084-18559103 | None:intergenic | 20.0% |
| !!! | GTAGTTTGAGTAATTTTATT+TGG | - | chr5_4:18559281-18559300 | Msa0841820:CDS | 20.0% |
| !! | CAAATATAACAAACTTTCAA+GGG | + | chr5_4:18559734-18559753 | None:intergenic | 20.0% |
| !! | ACAAATATAACAAACTTTCA+AGG | + | chr5_4:18559735-18559754 | None:intergenic | 20.0% |
| !!! | TAATTTTTAATACGAATCAC+CGG | - | chr5_4:18560043-18560062 | Msa0841820:intron | 20.0% |
| !! | ATGAATTATTATCGTATTAC+CGG | - | chr5_4:18560144-18560163 | Msa0841820:five_prime_UTR | 20.0% |
| !!! | TTTGTTTTTGTGTGTGTTTA+TGG | - | chr5_4:18554635-18554654 | Msa0841820:three_prime_UTR | 25.0% |
| !! | ACTAATTTGTAAGATCAGAA+AGG | + | chr5_4:18555054-18555073 | None:intergenic | 25.0% |
| ! | AAAAGTGAACTTGAATTTGA+AGG | - | chr5_4:18555371-18555390 | Msa0841820:intron | 25.0% |
| !!! | GTTTTGTTTTAGTGGTTTAA+TGG | - | chr5_4:18555625-18555644 | Msa0841820:intron | 25.0% |
| !!! | GTTTACAATATTTGTTATGC+AGG | - | chr5_4:18555649-18555668 | Msa0841820:intron | 25.0% |
| ! | GTAAGTTTAATGCTAATTCA+GGG | - | chr5_4:18555672-18555691 | Msa0841820:intron | 25.0% |
| ! | AAATTTACCATATCAGGATT+AGG | + | chr5_4:18555960-18555979 | None:intergenic | 25.0% |
| !! | GTAAATTTTCATATGTGACA+GGG | - | chr5_4:18555972-18555991 | Msa0841820:CDS | 25.0% |
| ! | GTAAGATGTTCTTTAAATTC+TGG | - | chr5_4:18556472-18556491 | Msa0841820:intron | 25.0% |
| ! | AAACGACACTCATTTATAAA+CGG | + | chr5_4:18556709-18556728 | None:intergenic | 25.0% |
| !!! | TTATAAATGAGTGTCGTTTA+AGG | - | chr5_4:18556710-18556729 | Msa0841820:intron | 25.0% |
| ! | AAACACACCAATAGTTATTA+GGG | + | chr5_4:18556801-18556820 | None:intergenic | 25.0% |
| !!! | AATGTATGTTCACTTTTCAA+TGG | + | chr5_4:18556898-18556917 | None:intergenic | 25.0% |
| ! | AAATACTACCTAACATTCAA+GGG | - | chr5_4:18557311-18557330 | Msa0841820:intron | 25.0% |
| ! | CTATTGTGTAATAATACATC+TGG | - | chr5_4:18557870-18557889 | Msa0841820:intron | 25.0% |
| !! | TAAACTAATGCATTTGAGTT+GGG | - | chr5_4:18557927-18557946 | Msa0841820:intron | 25.0% |
| ! | ATTGGCAAATTAGTATGAAT+GGG | - | chr5_4:18557992-18558011 | Msa0841820:intron | 25.0% |
| !! | ACTGTAAATCCATTTAAGAT+GGG | + | chr5_4:18558175-18558194 | None:intergenic | 25.0% |
| ! | TTACAGAACTATAATACTAG+AGG | + | chr5_4:18558512-18558531 | None:intergenic | 25.0% |
| ! | GTATCTTAAAACCAAGAAAA+TGG | - | chr5_4:18558578-18558597 | Msa0841820:CDS | 25.0% |
| ! | AGTATGAAATGTAGAAAATG+TGG | - | chr5_4:18558770-18558789 | Msa0841820:intron | 25.0% |
| ! | GAGCAATGAATTAAATTTGA+AGG | - | chr5_4:18558810-18558829 | Msa0841820:intron | 25.0% |
| !!! | GTATTTTCAAGCAATATATG+CGG | - | chr5_4:18558863-18558882 | Msa0841820:CDS | 25.0% |
| ! | TTTACAAATACACTAGTACA+TGG | + | chr5_4:18558910-18558929 | None:intergenic | 25.0% |
| !!! | TTTGTCTCCTTTATTTTCTT+TGG | - | chr5_4:18558992-18559011 | Msa0841820:intron | 25.0% |
| !!! | TTGTCTCCTTTATTTTCTTT+GGG | - | chr5_4:18558993-18559012 | Msa0841820:intron | 25.0% |
| !! | AGTATATATTTTGCAACTCA+TGG | + | chr5_4:18559249-18559268 | None:intergenic | 25.0% |
| !! | CAACTAAAATACACTTCTTT+TGG | + | chr5_4:18559328-18559347 | None:intergenic | 25.0% |
| !!! | CAAAAGAAGTGTATTTTAGT+TGG | - | chr5_4:18559326-18559345 | Msa0841820:CDS | 25.0% |
| !!! | ATTTGCTATTTGTAAACATG+TGG | - | chr5_4:18559355-18559374 | Msa0841820:CDS | 25.0% |
| !!! | TTTGCTATTTGTAAACATGT+GGG | - | chr5_4:18559356-18559375 | Msa0841820:CDS | 25.0% |
| ! | TCAAGGTTAAAATGTTATGT+AGG | + | chr5_4:18559412-18559431 | None:intergenic | 25.0% |
| TTAAGCAGAGAAAGAAAGAA+AGG | + | chr5_4:18554490-18554509 | None:intergenic | 30.0% | |
| ! | TTTTCTCATCACACAAACTT+GGG | + | chr5_4:18555353-18555372 | None:intergenic | 30.0% |
| ! | TTTTTCTCATCACACAAACT+TGG | + | chr5_4:18555354-18555373 | None:intergenic | 30.0% |
| ! | TTTGATGAAGTTGGTTAATG+CGG | - | chr5_4:18555590-18555609 | Msa0841820:intron | 30.0% |
| !!! | AAGTGCATGTTTTGTTTTAG+TGG | - | chr5_4:18555617-18555636 | Msa0841820:intron | 30.0% |
| GGTAAGTTTAATGCTAATTC+AGG | - | chr5_4:18555671-18555690 | Msa0841820:intron | 30.0% | |
| ! | GATTTTACTTACTTAGATGC+CGG | + | chr5_4:18555848-18555867 | None:intergenic | 30.0% |
| CTGAACAAACATGTATGATT+TGG | - | chr5_4:18555914-18555933 | Msa0841820:intron | 30.0% | |
| TAGATATCCTAATCCTGATA+TGG | - | chr5_4:18555950-18555969 | Msa0841820:CDS | 30.0% | |
| ! | GGTAAATTTTCATATGTGAC+AGG | - | chr5_4:18555971-18555990 | Msa0841820:CDS | 30.0% |
| TTCCTAAATGATCTTATAGG+AGG | + | chr5_4:18556015-18556034 | None:intergenic | 30.0% | |
| ATCATTTAGGAAAAACTCGA+TGG | - | chr5_4:18556023-18556042 | Msa0841820:intron | 30.0% | |
| AGATCTACTTTCCTAAGATA+GGG | + | chr5_4:18556135-18556154 | None:intergenic | 30.0% | |
| TAGATCTACTTTCCTAAGAT+AGG | + | chr5_4:18556136-18556155 | None:intergenic | 30.0% | |
| CTCACTTATGAAGATAAAGA+TGG | - | chr5_4:18556416-18556435 | Msa0841820:intron | 30.0% | |
| ATAGTTATTAGGGGTAGTTT+AGG | + | chr5_4:18556791-18556810 | None:intergenic | 30.0% | |
| AAACTACCCCTAATAACTAT+TGG | - | chr5_4:18556791-18556810 | Msa0841820:intron | 30.0% | |
| AACACACCAATAGTTATTAG+GGG | + | chr5_4:18556800-18556819 | None:intergenic | 30.0% | |
| GAAACACACCAATAGTTATT+AGG | + | chr5_4:18556802-18556821 | None:intergenic | 30.0% | |
| TGTACACAACATTCATTTGA+GGG | - | chr5_4:18556855-18556874 | Msa0841820:intron | 30.0% | |
| ! | AGAGATTGTGGTAATGTATA+TGG | - | chr5_4:18556975-18556994 | Msa0841820:intron | 30.0% |
| !! | ATATGGATCAATTGGTCTTT+CGG | + | chr5_4:18557034-18557053 | None:intergenic | 30.0% |
| ACCAATTGATCCATATTTCT+GGG | - | chr5_4:18557038-18557057 | Msa0841820:intron | 30.0% | |
| AATAAGTCAACCCAGAAATA+TGG | + | chr5_4:18557051-18557070 | None:intergenic | 30.0% | |
| CTATGAGTATACATGGAAAT+TGG | + | chr5_4:18557168-18557187 | None:intergenic | 30.0% | |
| CAATTTCCATGTATACTCAT+AGG | - | chr5_4:18557166-18557185 | Msa0841820:intron | 30.0% | |
| CAAATACTACCTAACATTCA+AGG | - | chr5_4:18557310-18557329 | Msa0841820:intron | 30.0% | |
| TCATTCGTCAAATTAAGAGA+TGG | - | chr5_4:18557423-18557442 | Msa0841820:intron | 30.0% | |
| AGATGTGATACCAAGTATAA+TGG | - | chr5_4:18557585-18557604 | Msa0841820:intron | 30.0% | |
| CATGCAATATCCATTATACT+TGG | + | chr5_4:18557598-18557617 | None:intergenic | 30.0% | |
| !!! | TTGATACTTTTTCAAGCAAG+TGG | + | chr5_4:18557644-18557663 | None:intergenic | 30.0% |
| ! | AATAATACATCTGGTACTGA+AGG | - | chr5_4:18557879-18557898 | Msa0841820:intron | 30.0% |
| ! | ATAATACATCTGGTACTGAA+GGG | - | chr5_4:18557880-18557899 | Msa0841820:intron | 30.0% |
| CTAAACTAATGCATTTGAGT+TGG | - | chr5_4:18557926-18557945 | Msa0841820:intron | 30.0% | |
| CATTGGCAAATTAGTATGAA+TGG | - | chr5_4:18557991-18558010 | Msa0841820:intron | 30.0% | |
| TTGGCAAATTAGTATGAATG+GGG | - | chr5_4:18557993-18558012 | Msa0841820:intron | 30.0% | |
| TACTTAATGAAAATGTGAGG+AGG | - | chr5_4:18558036-18558055 | Msa0841820:intron | 30.0% | |
| ACTTAATGAAAATGTGAGGA+GGG | - | chr5_4:18558037-18558056 | Msa0841820:intron | 30.0% | |
| ! | ATTTAAGATGGGAGAAACAA+AGG | + | chr5_4:18558164-18558183 | None:intergenic | 30.0% |
| ! | TTTGTTTCTCCCATCTTAAA+TGG | - | chr5_4:18558163-18558182 | Msa0841820:intron | 30.0% |
| CACTGTAAATCCATTTAAGA+TGG | + | chr5_4:18558176-18558195 | None:intergenic | 30.0% | |
| CTTTGATTAAAATTCGCATG+CGG | - | chr5_4:18558376-18558395 | Msa0841820:intron | 30.0% | |
| TCAACATACTCTCTTTGATT+GGG | + | chr5_4:18558456-18558475 | None:intergenic | 30.0% | |
| TTCAACATACTCTCTTTGAT+TGG | + | chr5_4:18558457-18558476 | None:intergenic | 30.0% | |
| ! | ATTCATTCAGTCCATTTTCT+TGG | + | chr5_4:18558592-18558611 | None:intergenic | 30.0% |
| AGAAGGCTGAAAATAATGAA+GGG | - | chr5_4:18558684-18558703 | Msa0841820:intron | 30.0% | |
| ACTCGCATGTTAAGAATTAT+TGG | + | chr5_4:18558937-18558956 | None:intergenic | 30.0% | |
| GCGAGTTATTTAAGTGTATT+TGG | - | chr5_4:18558951-18558970 | Msa0841820:CDS | 30.0% | |
| AACAGTATATCCTTATGTCA+TGG | - | chr5_4:18559104-18559123 | Msa0841820:CDS | 30.0% | |
| GAGTACTTCAAACTTTAGTT+GGG | - | chr5_4:18559126-18559145 | Msa0841820:CDS | 30.0% | |
| ! | CAGTATTCAGTTTTGCTTAT+TGG | + | chr5_4:18559216-18559235 | None:intergenic | 30.0% |
| TTATTTGGAGATTTCAGCTA+TGG | - | chr5_4:18559296-18559315 | Msa0841820:CDS | 30.0% | |
| TATTTGGAGATTTCAGCTAT+GGG | - | chr5_4:18559297-18559316 | Msa0841820:CDS | 30.0% | |
| ! | CTAAAATACACTTCTTTTGG+TGG | + | chr5_4:18559325-18559344 | None:intergenic | 30.0% |
| !! | ATGTAGGATTTGCTAAAACA+AGG | + | chr5_4:18559396-18559415 | None:intergenic | 30.0% |
| GACGTAACAATAAATAACAC+CGG | + | chr5_4:18559712-18559731 | None:intergenic | 30.0% | |
| GGTAACTTCACAAGATATTA+TGG | + | chr5_4:18559763-18559782 | None:intergenic | 30.0% | |
| ACAATGTTAGAACTGTATGT+TGG | + | chr5_4:18559865-18559884 | None:intergenic | 30.0% | |
| TGATCTTGATACTCAATCAT+TGG | + | chr5_4:18560074-18560093 | None:intergenic | 30.0% | |
| !!! | TGTGGTTTTGAAGTTGGTTA+GGG | - | chr5_4:18555206-18555225 | Msa0841820:intron | 35.0% |
| ! | CATCTTTTGCAGGAAGTAAA+GGG | + | chr5_4:18555494-18555513 | None:intergenic | 35.0% |
| TTTGCAGAAGAATGTGGTTT+CGG | - | chr5_4:18555515-18555534 | Msa0841820:intron | 35.0% | |
| !! | GGTGATTAGTTTGATGAAGT+TGG | - | chr5_4:18555581-18555600 | Msa0841820:intron | 35.0% |
| TCTATCAACTCAACTACTCA+AGG | - | chr5_4:18555866-18555885 | Msa0841820:intron | 35.0% | |
| TACATGTTTGTTCAGCTACT+AGG | + | chr5_4:18555909-18555928 | None:intergenic | 35.0% | |
| ! | CACTTCATCATTGTTGTTCT+TGG | + | chr5_4:18556058-18556077 | None:intergenic | 35.0% |
| CAAGAACAACAATGATGAAG+TGG | - | chr5_4:18556056-18556075 | Msa0841820:intron | 35.0% | |
| AACAACAATGATGAAGTGGA+TGG | - | chr5_4:18556060-18556079 | Msa0841820:intron | 35.0% | |
| !! | ATGTTCAGCTGTTTTACTCT+AGG | - | chr5_4:18556201-18556220 | Msa0841820:intron | 35.0% |
| !! | GTTTTTGCTGATGATGAAGT+TGG | - | chr5_4:18556258-18556277 | Msa0841820:intron | 35.0% |
| AATCTTTGGCGATTGTGTAA+TGG | - | chr5_4:18556304-18556323 | Msa0841820:intron | 35.0% | |
| ! | TCACTCATCATTTCTTTTCC+TGG | + | chr5_4:18556356-18556375 | None:intergenic | 35.0% |
| CATATTCTGAACCATGCAAA+AGG | + | chr5_4:18556394-18556413 | None:intergenic | 35.0% | |
| ATGAAGATAAAGATGGAGAC+TGG | - | chr5_4:18556423-18556442 | Msa0841820:intron | 35.0% | |
| TAAAGAACATCTTACTCCCA+TGG | + | chr5_4:18556467-18556486 | None:intergenic | 35.0% | |
| !!! | CTATTTTGCTTCTGAGACAA+TGG | - | chr5_4:18556544-18556563 | Msa0841820:intron | 35.0% |
| ! | AAGGAGTACAAGTCTAATTC+TGG | + | chr5_4:18556686-18556705 | None:intergenic | 35.0% |
| GACACTCATTTATAAACGGA+AGG | + | chr5_4:18556705-18556724 | None:intergenic | 35.0% | |
| TTAGGGGTAGTTTAGGAAAA+GGG | + | chr5_4:18556784-18556803 | None:intergenic | 35.0% | |
| ATTAGGGGTAGTTTAGGAAA+AGG | + | chr5_4:18556785-18556804 | None:intergenic | 35.0% | |
| GTGTACACAACATTCATTTG+AGG | - | chr5_4:18556854-18556873 | Msa0841820:intron | 35.0% | |
| ! | CATTCATTTGAGGGCATAAT+TGG | - | chr5_4:18556864-18556883 | Msa0841820:intron | 35.0% |
| !! | TATGGATCAATTGGTCTTTC+GGG | + | chr5_4:18557033-18557052 | None:intergenic | 35.0% |
| GACCAATTGATCCATATTTC+TGG | - | chr5_4:18557037-18557056 | Msa0841820:intron | 35.0% | |
| ACCCAGAAATATGGATCAAT+TGG | + | chr5_4:18557042-18557061 | None:intergenic | 35.0% | |
| AATGTGCCTATGAGTATACA+TGG | + | chr5_4:18557175-18557194 | None:intergenic | 35.0% | |
| TATACTCATAGGCACATTTG+TGG | - | chr5_4:18557177-18557196 | Msa0841820:intron | 35.0% | |
| !!! | TGTTTTTTCATGCCAAACAG+CGG | - | chr5_4:18557263-18557282 | Msa0841820:intron | 35.0% |
| AACAAGAACCCTTGAATGTT+AGG | + | chr5_4:18557322-18557341 | None:intergenic | 35.0% | |
| ! | TTCCTGAAATTTGCTCAACA+TGG | - | chr5_4:18557352-18557371 | Msa0841820:intron | 35.0% |
| ! | TCCTGAAATTTGCTCAACAT+GGG | - | chr5_4:18557353-18557372 | Msa0841820:intron | 35.0% |
| AAAAGACAGGAAGAAACCTA+AGG | + | chr5_4:18557727-18557746 | None:intergenic | 35.0% | |
| AATCCTGCTACAGAATATTC+TGG | - | chr5_4:18557748-18557767 | Msa0841820:intron | 35.0% | |
| !! | CATTTGAGTTGGGACAAAAA+TGG | - | chr5_4:18557937-18557956 | Msa0841820:intron | 35.0% |
| TTATCTGCTTCATAACGCAT+TGG | - | chr5_4:18557974-18557993 | Msa0841820:intron | 35.0% | |
| AAATTAGTATGAATGGGGTG+CGG | - | chr5_4:18557998-18558017 | Msa0841820:intron | 35.0% | |
| GGGTACTTAATGAAAATGTG+AGG | - | chr5_4:18558033-18558052 | Msa0841820:intron | 35.0% | |
| AGGAGGGAATAGTTAGAATA+TGG | - | chr5_4:18558053-18558072 | Msa0841820:intron | 35.0% | |
| GGAGGGAATAGTTAGAATAT+GGG | - | chr5_4:18558054-18558073 | Msa0841820:intron | 35.0% | |
| GAGGGAATAGTTAGAATATG+GGG | - | chr5_4:18558055-18558074 | Msa0841820:intron | 35.0% | |
| ATAGTTAGAATATGGGGCTT+TGG | - | chr5_4:18558061-18558080 | Msa0841820:intron | 35.0% | |
| ATGAGCTGAAGTTTCTTAGA+GGG | + | chr5_4:18558109-18558128 | None:intergenic | 35.0% | |
| AATGAGCTGAAGTTTCTTAG+AGG | + | chr5_4:18558110-18558129 | None:intergenic | 35.0% | |
| CATGATCAAATTCTTCAGTC+TGG | + | chr5_4:18558294-18558313 | None:intergenic | 35.0% | |
| TGAAGAATTTGATCATGACC+AGG | - | chr5_4:18558297-18558316 | Msa0841820:CDS | 35.0% | |
| ATTTACGGGCTTGTCTATTT+AGG | - | chr5_4:18558531-18558550 | Msa0841820:CDS | 35.0% | |
| TGGACTGAATGAATGACATA+AGG | - | chr5_4:18558598-18558617 | Msa0841820:CDS | 35.0% | |
| GGAATTGCAATTTAGTGAGT+GGG | + | chr5_4:18558631-18558650 | None:intergenic | 35.0% | |
| AGGAATTGCAATTTAGTGAG+TGG | + | chr5_4:18558632-18558651 | None:intergenic | 35.0% | |
| TGTTCATTGATACTTGCAGA+AGG | - | chr5_4:18558667-18558686 | Msa0841820:intron | 35.0% | |
| CAGAAGGCTGAAAATAATGA+AGG | - | chr5_4:18558683-18558702 | Msa0841820:intron | 35.0% | |
| GTGTTGCCCAAAGAAAATAA+AGG | + | chr5_4:18559002-18559021 | None:intergenic | 35.0% | |
| GCAACACTGAAATGAATTGA+TGG | - | chr5_4:18559015-18559034 | Msa0841820:intron | 35.0% | |
| GTGATCTCATTTGACATATC+AGG | + | chr5_4:18559049-18559068 | None:intergenic | 35.0% | |
| ! | TTGAAGTACTCCATGACATA+AGG | + | chr5_4:18559117-18559136 | None:intergenic | 35.0% |
| ! | GGAGTACTTCAAACTTTAGT+TGG | - | chr5_4:18559125-18559144 | Msa0841820:CDS | 35.0% |
| ATTGTTTCCTGCCTTTGATT+TGG | - | chr5_4:18559185-18559204 | Msa0841820:CDS | 35.0% | |
| ! | TTGTTTCCTGCCTTTGATTT+GGG | - | chr5_4:18559186-18559205 | Msa0841820:CDS | 35.0% |
| ! | TATTGGTTGACCCAAATCAA+AGG | + | chr5_4:18559199-18559218 | None:intergenic | 35.0% |
| GCTATGGGAACTTAAAATCA+AGG | + | chr5_4:18559429-18559448 | None:intergenic | 35.0% | |
| AAATACACTTGAGCAAAGAG+AGG | + | chr5_4:18559521-18559540 | None:intergenic | 35.0% | |
| ATTAAAACTTGGTCGGACAA+AGG | + | chr5_4:18559619-18559638 | None:intergenic | 35.0% | |
| ATCCAGCATTAAAACTTGGT+CGG | + | chr5_4:18559626-18559645 | None:intergenic | 35.0% | |
| TTGGATCCAGCATTAAAACT+TGG | + | chr5_4:18559630-18559649 | None:intergenic | 35.0% | |
| !! | AAGTTTTAATGCTGGATCCA+AGG | - | chr5_4:18559629-18559648 | Msa0841820:intron | 35.0% |
| AAGGATTATGACTAATTCCC+TGG | - | chr5_4:18559665-18559684 | Msa0841820:intron | 35.0% | |
| TTGGCAGTTAAACAGATTTC+CGG | - | chr5_4:18559690-18559709 | Msa0841820:intron | 35.0% | |
| GTGAAGTCTGTAATCACTAT+AGG | - | chr5_4:18559800-18559819 | Msa0841820:intron | 35.0% | |
| TATAGGAAAACCTGTTTGCT+TGG | - | chr5_4:18559817-18559836 | Msa0841820:intron | 35.0% | |
| TTCAATTCATCCAAGCAAAC+AGG | + | chr5_4:18559830-18559849 | None:intergenic | 35.0% | |
| ATTAGGAGGAAAGAAAGAGT+GGG | + | chr5_4:18559897-18559916 | None:intergenic | 35.0% | |
| AACGAATGTTGTTCACGATT+AGG | + | chr5_4:18559914-18559933 | None:intergenic | 35.0% | |
| ! | TTTTTAATACGAATCACCGG+AGG | - | chr5_4:18560046-18560065 | Msa0841820:intron | 35.0% |
| GTAGATTGTGAAGTGAACTG+TGG | - | chr5_4:18555188-18555207 | Msa0841820:intron | 40.0% | |
| !!! | GTGAACTGTGGTTTTGAAGT+TGG | - | chr5_4:18555200-18555219 | Msa0841820:intron | 40.0% |
| !!! | CTGTGGTTTTGAAGTTGGTT+AGG | - | chr5_4:18555205-18555224 | Msa0841820:intron | 40.0% |
| ACGATGGAACGGAATTACTT+GGG | - | chr5_4:18555285-18555304 | Msa0841820:intron | 40.0% | |
| GGGATTGTCTGATTGTTCAT+CGG | - | chr5_4:18555305-18555324 | Msa0841820:intron | 40.0% | |
| ATTGTCTGATTGTTCATCGG+TGG | - | chr5_4:18555308-18555327 | Msa0841820:intron | 40.0% | |
| ATTTGAAGGCTACTGAGTTG+AGG | - | chr5_4:18555385-18555404 | Msa0841820:intron | 40.0% | |
| ! | CCATCTTTTGCAGGAAGTAA+AGG | + | chr5_4:18555495-18555514 | None:intergenic | 40.0% |
| CCTTTACTTCCTGCAAAAGA+TGG | - | chr5_4:18555492-18555511 | Msa0841820:intron | 40.0% | |
| ! | TTCTGCAAACCATCTTTTGC+AGG | + | chr5_4:18555504-18555523 | None:intergenic | 40.0% |
| ! | AGATGGTTTGCAGAAGAATG+TGG | - | chr5_4:18555509-18555528 | Msa0841820:intron | 40.0% |
| TTGCAGAAGAATGTGGTTTC+GGG | - | chr5_4:18555516-18555535 | Msa0841820:intron | 40.0% | |
| !! | GATTTGCTGATACCGTTGAT+GGG | - | chr5_4:18555550-18555569 | Msa0841820:intron | 40.0% |
| AGTGAAAGAAATGCCGAGTA+AGG | - | chr5_4:18555742-18555761 | Msa0841820:intron | 40.0% | |
| CTTTCCTGCAAAACCTTACT+CGG | + | chr5_4:18555758-18555777 | None:intergenic | 40.0% | |
| AGGAACTACTGGTCATAATC+AGG | - | chr5_4:18555793-18555812 | Msa0841820:intron | 40.0% | |
| GGCCTCCTATAAGATCATTT+AGG | - | chr5_4:18556010-18556029 | Msa0841820:intron | 40.0% | |
| ! | ATTGTTGTTCTTGGAAGCGT+TGG | + | chr5_4:18556049-18556068 | None:intergenic | 40.0% |
| ACAGCTGAACATCTTCTCAA+GGG | + | chr5_4:18556193-18556212 | None:intergenic | 40.0% | |
| AACAGCTGAACATCTTCTCA+AGG | + | chr5_4:18556194-18556213 | None:intergenic | 40.0% | |
| TGTTGTGTACACTACTTCGA+AGG | + | chr5_4:18556846-18556865 | None:intergenic | 40.0% | |
| AGACACTCATTGTGAAACGA+AGG | - | chr5_4:18556948-18556967 | Msa0841820:intron | 40.0% | |
| GACACTCATTGTGAAACGAA+GGG | - | chr5_4:18556949-18556968 | Msa0841820:intron | 40.0% | |
| AACGAAGGGATTAGAGATTG+TGG | - | chr5_4:18556963-18556982 | Msa0841820:intron | 40.0% | |
| ACCCATGTTGAGCAAATTTC+AGG | + | chr5_4:18557357-18557376 | None:intergenic | 40.0% | |
| TGTAGCAGGATTGAAAAGAC+AGG | + | chr5_4:18557740-18557759 | None:intergenic | 40.0% | |
| TAGCCAGAATATTCTGTAGC+AGG | + | chr5_4:18557754-18557773 | None:intergenic | 40.0% | |
| AATTAGTATGAATGGGGTGC+GGG | - | chr5_4:18557999-18558018 | Msa0841820:intron | 40.0% | |
| TGAGCTGAAGTTTCTTAGAG+GGG | + | chr5_4:18558108-18558127 | None:intergenic | 40.0% | |
| CATATTGAGCAACACAATCC+TGG | + | chr5_4:18558318-18558337 | None:intergenic | 40.0% | |
| TGCGGCCAACCAAAATAATA+TGG | - | chr5_4:18558394-18558413 | Msa0841820:intron | 40.0% | |
| GCGGCCAACCAAAATAATAT+GGG | - | chr5_4:18558395-18558414 | Msa0841820:intron | 40.0% | |
| !!! | GGGTCCCATATTATTTTGGT+TGG | + | chr5_4:18558402-18558421 | None:intergenic | 40.0% |
| ! | ACGTGGGTCCCATATTATTT+TGG | + | chr5_4:18558406-18558425 | None:intergenic | 40.0% |
| AATATGGGACCCACGTAATA+TGG | - | chr5_4:18558410-18558429 | Msa0841820:intron | 40.0% | |
| GCAATTCCTTATGTATGTGC+AGG | - | chr5_4:18558643-18558662 | Msa0841820:CDS | 40.0% | |
| GAACATCCTGCACATACATA+AGG | + | chr5_4:18558652-18558671 | None:intergenic | 40.0% | |
| AGAACACATACCTAACCCAA+TGG | + | chr5_4:18558718-18558737 | None:intergenic | 40.0% | |
| TAGGTATGTGTTCTCAGTGA+TGG | - | chr5_4:18558724-18558743 | Msa0841820:intron | 40.0% | |
| GTTCTCAGTGATGGTTCATT+TGG | - | chr5_4:18558733-18558752 | Msa0841820:intron | 40.0% | |
| GAAAATACAGATGCATGCGT+AGG | + | chr5_4:18558851-18558870 | None:intergenic | 40.0% | |
| AGGCAGATAAATTGGAGTTC+GGG | + | chr5_4:18559501-18559520 | None:intergenic | 40.0% | |
| GAGGCAGATAAATTGGAGTT+CGG | + | chr5_4:18559502-18559521 | None:intergenic | 40.0% | |
| GCAAAGAGAGGCAGATAAAT+TGG | + | chr5_4:18559509-18559528 | None:intergenic | 40.0% | |
| AGTCCAAAAGCAGAAGTTAG+AGG | - | chr5_4:18559573-18559592 | Msa0841820:intron | 40.0% | |
| GTCCAAAAGCAGAAGTTAGA+GGG | - | chr5_4:18559574-18559593 | Msa0841820:intron | 40.0% | |
| !!! | CCTTTGCTTTTTACAGTCCT+TGG | + | chr5_4:18559649-18559668 | None:intergenic | 40.0% |
| CCAAGGACTGTAAAAAGCAA+AGG | - | chr5_4:18559646-18559665 | Msa0841820:intron | 40.0% | |
| TATGACTAATTCCCTGGCAT+TGG | - | chr5_4:18559671-18559690 | Msa0841820:intron | 40.0% | |
| GATTAGGAGGAAAGAAAGAG+TGG | + | chr5_4:18559898-18559917 | None:intergenic | 40.0% | |
| GAATGTTGTTCACGATTAGG+AGG | + | chr5_4:18559911-18559930 | None:intergenic | 40.0% | |
| ATGGCTGTTCAAAATGAGCA+AGG | - | chr5_4:18559983-18560002 | Msa0841820:intron | 40.0% | |
| TGGCTGTTCAAAATGAGCAA+GGG | - | chr5_4:18559984-18560003 | Msa0841820:intron | 40.0% | |
| ! | GGTTGCTTTAGTTGTGAACA+AGG | - | chr5_4:18560005-18560024 | Msa0841820:intron | 40.0% |
| AAATAAAGCAGCAGCAACAC+TGG | + | chr5_4:18560170-18560189 | None:intergenic | 40.0% | |
| GACGATGGAACGGAATTACT+TGG | - | chr5_4:18555284-18555303 | Msa0841820:intron | 45.0% | |
| ! | AAGGCTACTGAGTTGAGGTT+GGG | - | chr5_4:18555390-18555409 | Msa0841820:intron | 45.0% |
| ATCCGAATCCATTTCCCTCT+CGG | + | chr5_4:18555436-18555455 | None:intergenic | 45.0% | |
| GCAGGAAGTAAAGGGAACAA+TGG | + | chr5_4:18555486-18555505 | None:intergenic | 45.0% | |
| TGCAGAAGAATGTGGTTTCG+GGG | - | chr5_4:18555517-18555536 | Msa0841820:intron | 45.0% | |
| !! | GGATTTGCTGATACCGTTGA+TGG | - | chr5_4:18555549-18555568 | Msa0841820:intron | 45.0% |
| ! | AATGCCGAGTAAGGTTTTGC+AGG | - | chr5_4:18555751-18555770 | Msa0841820:intron | 45.0% |
| ! | CGAGTAAGGTTTTGCAGGAA+AGG | - | chr5_4:18555756-18555775 | Msa0841820:intron | 45.0% |
| ACTACTGGTCATAATCAGGC+AGG | - | chr5_4:18555797-18555816 | Msa0841820:intron | 45.0% | |
| GATGAAGTGGATGGAAAACC+AGG | - | chr5_4:18556069-18556088 | Msa0841820:intron | 45.0% | |
| ! | ACCTTCACAAAGAGTGCAGT+GGG | + | chr5_4:18556096-18556115 | None:intergenic | 45.0% |
| ACTCTTTGTGAAGGTCAGCA+TGG | - | chr5_4:18556101-18556120 | Msa0841820:intron | 45.0% | |
| TTTGTGAAGGTCAGCATGGA+TGG | - | chr5_4:18556105-18556124 | Msa0841820:intron | 45.0% | |
| TTTGGCGATTGTGTAATGGC+AGG | - | chr5_4:18556308-18556327 | Msa0841820:intron | 45.0% | |
| ! | TTCTTTTCCTGGAGCTCCAT+GGG | + | chr5_4:18556345-18556364 | None:intergenic | 45.0% |
| ! | TTTCTTTTCCTGGAGCTCCA+TGG | + | chr5_4:18556346-18556365 | None:intergenic | 45.0% |
| ATGGAGACTGGATGCTTGTA+GGG | - | chr5_4:18556435-18556454 | Msa0841820:intron | 45.0% | |
| !! | ATTGTTGGGTTGAGTCTCTC+AGG | - | chr5_4:18557129-18557148 | Msa0841820:intron | 45.0% |
| GTTGAGTCTCTCAGGTTTAC+TGG | - | chr5_4:18557137-18557156 | Msa0841820:intron | 45.0% | |
| GTGTCTGTTCTTTGAGTGCT+AGG | - | chr5_4:18557223-18557242 | Msa0841820:intron | 45.0% | |
| ! | TTTTTCATGCCAAACAGCGG+TGG | - | chr5_4:18557266-18557285 | Msa0841820:intron | 45.0% |
| GATATCATACCACCGCTGTT+TGG | + | chr5_4:18557278-18557297 | None:intergenic | 45.0% | |
| AAATTAGGGGGCTCATGTCA+TGG | - | chr5_4:18557504-18557523 | Msa0841820:intron | 45.0% | |
| TGGCTACCGAGAACAACTAA+TGG | - | chr5_4:18557524-18557543 | Msa0841820:intron | 45.0% | |
| GGCTACCGAGAACAACTAAT+GGG | - | chr5_4:18557525-18557544 | Msa0841820:intron | 45.0% | |
| ATGCGCCCATTAGTTGTTCT+CGG | + | chr5_4:18557533-18557552 | None:intergenic | 45.0% | |
| GTTCAGCATGCACTATCCTT+AGG | - | chr5_4:18557708-18557727 | Msa0841820:intron | 45.0% | |
| AAGGGCTGCATAATGTTGCT+GGG | - | chr5_4:18557898-18557917 | Msa0841820:intron | 45.0% | |
| ATTAGTATGAATGGGGTGCG+GGG | - | chr5_4:18558000-18558019 | Msa0841820:intron | 45.0% | |
| ! | TAGAATATGGGGCTTTGGCA+TGG | - | chr5_4:18558066-18558085 | Msa0841820:intron | 45.0% |
| !! | TCTGCTTTTGGACTTCTCCA+TGG | + | chr5_4:18559567-18559586 | None:intergenic | 45.0% |
| ! | CACCCTCTAACTTCTGCTTT+TGG | + | chr5_4:18559579-18559598 | None:intergenic | 45.0% |
| ACAAAGGCAGTCATCAGTTC+CGG | + | chr5_4:18559603-18559622 | None:intergenic | 45.0% | |
| !! | GTCCGACCAAGTTTTAATGC+TGG | - | chr5_4:18559621-18559640 | Msa0841820:intron | 45.0% |
| CTGTTTAACTGCCAATGCCA+GGG | + | chr5_4:18559685-18559704 | None:intergenic | 45.0% | |
| TCTGTTTAACTGCCAATGCC+AGG | + | chr5_4:18559686-18559705 | None:intergenic | 45.0% | |
| AACCTACCTACTGTCACACT+GGG | + | chr5_4:18559963-18559982 | None:intergenic | 45.0% | |
| TAACCTACCTACTGTCACAC+TGG | + | chr5_4:18559964-18559983 | None:intergenic | 45.0% | |
| GTGTGACAGTAGGTAGGTTA+TGG | - | chr5_4:18559964-18559983 | Msa0841820:intron | 45.0% | |
| ! | TACTCAATCATTGGTGCCTC+CGG | + | chr5_4:18560065-18560084 | None:intergenic | 45.0% |
| GGTTAGGGAAATGTCTCCGA+CGG | - | chr5_4:18555221-18555240 | Msa0841820:intron | 50.0% | |
| AACTGTCGTCGACGATGGAA+CGG | - | chr5_4:18555274-18555293 | Msa0841820:intron | 50.0% | |
| ! | GAAGGCTACTGAGTTGAGGT+TGG | - | chr5_4:18555389-18555408 | Msa0841820:intron | 50.0% |
| TCAATCACCCGAGAGGGAAA+TGG | - | chr5_4:18555425-18555444 | Msa0841820:intron | 50.0% | |
| ! | ACCCGAGAGGGAAATGGATT+CGG | - | chr5_4:18555431-18555450 | Msa0841820:intron | 50.0% |
| TCCGAATCCATTTCCCTCTC+GGG | + | chr5_4:18555435-18555454 | None:intergenic | 50.0% | |
| GTGGTTTCGGGGAATAAGAG+AGG | - | chr5_4:18555528-18555547 | Msa0841820:intron | 50.0% | |
| !!! | TACCGTTGATGGGTTTTCGC+AGG | - | chr5_4:18555560-18555579 | Msa0841820:intron | 50.0% |
| CACCTGCGAAAACCCATCAA+CGG | + | chr5_4:18555565-18555584 | None:intergenic | 50.0% | |
| GTAGTTCCTCTAGCTGCACA+AGG | + | chr5_4:18555782-18555801 | None:intergenic | 50.0% | |
| TGTGCAGCTAGAGGAACTAC+TGG | - | chr5_4:18555782-18555801 | Msa0841820:intron | 50.0% | |
| ! | TTCTATCGCTGGTTGTGCAC+CGG | - | chr5_4:18555826-18555845 | Msa0841820:intron | 50.0% |
| TGTGACAGGGCACAAGTTGT+TGG | - | chr5_4:18555985-18556004 | Msa0841820:CDS | 50.0% | |
| ACAGGGCACAAGTTGTTGGT+TGG | - | chr5_4:18555989-18556008 | Msa0841820:intron | 50.0% | |
| TCCCACTGCACTCTTTGTGA+AGG | - | chr5_4:18556092-18556111 | Msa0841820:intron | 50.0% | |
| ! | GACCTTCACAAAGAGTGCAG+TGG | + | chr5_4:18556097-18556116 | None:intergenic | 50.0% |
| TGGATGGTGCTCCCTATCTT+AGG | - | chr5_4:18556121-18556140 | Msa0841820:intron | 50.0% | |
| TGATGAGTGAGAGCAAGCTG+AGG | - | chr5_4:18556366-18556385 | Msa0841820:intron | 50.0% | |
| GATGAGTGAGAGCAAGCTGA+GGG | - | chr5_4:18556367-18556386 | Msa0841820:intron | 50.0% | |
| ! | AAGCTGAGGGACCTTTTGCA+TGG | - | chr5_4:18556380-18556399 | Msa0841820:intron | 50.0% |
| GATGGAGACTGGATGCTTGT+AGG | - | chr5_4:18556434-18556453 | Msa0841820:intron | 50.0% | |
| TGGAGACTGGATGCTTGTAG+GGG | - | chr5_4:18556436-18556455 | Msa0841820:intron | 50.0% | |
| ! | TTCCAAGGGGGCATACAAGT+AGG | + | chr5_4:18557008-18557027 | None:intergenic | 50.0% |
| TGGTCTTTCGGGACTTCCAA+GGG | + | chr5_4:18557022-18557041 | None:intergenic | 50.0% | |
| ! | TTGGTCTTTCGGGACTTCCA+AGG | + | chr5_4:18557023-18557042 | None:intergenic | 50.0% |
| GAAGGGCTGCATAATGTTGC+TGG | - | chr5_4:18557897-18557916 | Msa0841820:intron | 50.0% | |
| ! | AATATGGGGCTTTGGCATGG+AGG | - | chr5_4:18558069-18558088 | Msa0841820:intron | 50.0% |
| ! | ATATGGGGCTTTGGCATGGA+GGG | - | chr5_4:18558070-18558089 | Msa0841820:intron | 50.0% |
| ATGGGACCCACGTAATATGG+TGG | - | chr5_4:18558413-18558432 | Msa0841820:intron | 50.0% | |
| TGGGACCCACGTAATATGGT+GGG | - | chr5_4:18558414-18558433 | Msa0841820:intron | 50.0% | |
| CGTGTCCCACCATATTACGT+GGG | + | chr5_4:18558422-18558441 | None:intergenic | 50.0% | |
| ACGTGTCCCACCATATTACG+TGG | + | chr5_4:18558423-18558442 | None:intergenic | 50.0% | |
| ! | ATGAAGGGTTCTGACGCCAT+TGG | - | chr5_4:18558699-18558718 | Msa0841820:intron | 50.0% |
| ! | TGAAGGGTTCTGACGCCATT+GGG | - | chr5_4:18558700-18558719 | Msa0841820:intron | 50.0% |
| GGTTGACCCAAATCAAAGGC+AGG | + | chr5_4:18559195-18559214 | None:intergenic | 50.0% | |
| !! | AGCAGAAGTTAGAGGGTGTC+CGG | - | chr5_4:18559581-18559600 | Msa0841820:intron | 50.0% |
| GTTGTTCCCAGTGTGACAGT+AGG | - | chr5_4:18559954-18559973 | Msa0841820:intron | 50.0% | |
| TTCCCAGTGTGACAGTAGGT+AGG | - | chr5_4:18559958-18559977 | Msa0841820:intron | 50.0% | |
| TAGGGAAATGTCTCCGACGG+CGG | - | chr5_4:18555224-18555243 | Msa0841820:intron | 55.0% | |
| GAGTTGAGGTTGGGTCTTCC+CGG | - | chr5_4:18555399-18555418 | Msa0841820:intron | 55.0% | |
| CTCTCGGGTGATTGAGATCC+GGG | + | chr5_4:18555420-18555439 | None:intergenic | 55.0% | |
| CCTCTCGGGTGATTGAGATC+CGG | + | chr5_4:18555421-18555440 | None:intergenic | 55.0% | |
| CGGATCTCAATCACCCGAGA+GGG | - | chr5_4:18555419-18555438 | Msa0841820:intron | 55.0% | |
| GTGATGCTATCGCCTAGACC+TGG | - | chr5_4:18555701-18555720 | Msa0841820:intron | 55.0% | |
| ATGCTATCGCCTAGACCTGG+TGG | - | chr5_4:18555704-18555723 | Msa0841820:intron | 55.0% | |
| ! | GAAAGGCCTTGTGCAGCTAG+AGG | - | chr5_4:18555773-18555792 | Msa0841820:intron | 55.0% |
| ! | ACAAAGAGTGCAGTGGGACC+TGG | + | chr5_4:18556090-18556109 | None:intergenic | 55.0% |
| TGTGTAATGGCAGGCCAGTG+TGG | - | chr5_4:18556317-18556336 | Msa0841820:intron | 55.0% | |
| TGCTTGTAGGGGACGTACCA+TGG | - | chr5_4:18556447-18556466 | Msa0841820:intron | 55.0% | |
| GCTTGTAGGGGACGTACCAT+GGG | - | chr5_4:18556448-18556467 | Msa0841820:intron | 55.0% | |
| GTCCTACTTGTATGCCCCCT+TGG | - | chr5_4:18557003-18557022 | Msa0841820:intron | 55.0% | |
| GTCTTTCGGGACTTCCAAGG+GGG | + | chr5_4:18557020-18557039 | None:intergenic | 55.0% | |
| GGTCTTTCGGGACTTCCAAG+GGG | + | chr5_4:18557021-18557040 | None:intergenic | 55.0% | |
| ! | GGTTCTGACGCCATTGGGTT+AGG | - | chr5_4:18558705-18558724 | Msa0841820:intron | 55.0% |
| TTCTTTCCTCCACAGCTCCC+AGG | - | chr5_4:18559540-18559559 | Msa0841820:intron | 55.0% | |
| TCTTTCCTCCACAGCTCCCA+GGG | - | chr5_4:18559541-18559560 | Msa0841820:intron | 55.0% | |
| TTGGACTTCTCCATGGCCCT+GGG | + | chr5_4:18559560-18559579 | None:intergenic | 55.0% | |
| TTTGGACTTCTCCATGGCCC+TGG | + | chr5_4:18559561-18559580 | None:intergenic | 55.0% | |
| AAAGCAGCAGCAACACTGGC+CGG | + | chr5_4:18560166-18560185 | None:intergenic | 55.0% | |
| GCGCAAACTGTCGTCGACGA+TGG | - | chr5_4:18555269-18555288 | Msa0841820:intron | 60.0% | |
| CCGGATCTCAATCACCCGAG+AGG | - | chr5_4:18555418-18555437 | Msa0841820:intron | 60.0% | |
| !! | GCAGGTGCTGCTTCTATCGC+TGG | - | chr5_4:18555815-18555834 | Msa0841820:intron | 60.0% |
| GAGCTCCATGGGAACCACAC+TGG | + | chr5_4:18556334-18556353 | None:intergenic | 60.0% | |
| TGTGGTTCCCATGGAGCTCC+AGG | - | chr5_4:18556335-18556354 | Msa0841820:intron | 60.0% | |
| TGGGGTGCGGGGAATTCAGT+AGG | - | chr5_4:18558011-18558030 | Msa0841820:intron | 60.0% | |
| GGGGTGCGGGGAATTCAGTA+GGG | - | chr5_4:18558012-18558031 | Msa0841820:intron | 60.0% | |
| GGGTGCGGGGAATTCAGTAG+GGG | - | chr5_4:18558013-18558032 | Msa0841820:intron | 60.0% | |
| GGAAATGTCTCCGACGGCGG+TGG | - | chr5_4:18555227-18555246 | Msa0841820:intron | 65.0% | |
| CGGTGGCTACGGAGGAGGAA+GGG | - | chr5_4:18555244-18555263 | Msa0841820:intron | 65.0% | |
| TGGCTACGGAGGAGGAAGGG+CGG | - | chr5_4:18555247-18555266 | Msa0841820:intron | 65.0% | |
| GCCTAGACCTGGTGGAGCTC+AGG | - | chr5_4:18555712-18555731 | Msa0841820:intron | 65.0% | |
| GCCTGAGCTCCACCAGGTCT+AGG | + | chr5_4:18555716-18555735 | None:intergenic | 65.0% | |
| GCAGGCCAGTGTGGTTCCCA+TGG | - | chr5_4:18556326-18556345 | Msa0841820:intron | 65.0% | |
| GTCTCCGACGGCGGTGGCTA+CGG | - | chr5_4:18555233-18555252 | Msa0841820:intron | 70.0% | |
| TCCTCCGTAGCCACCGCCGT+CGG | + | chr5_4:18555240-18555259 | None:intergenic | 70.0% | |
| GCGGTGGCTACGGAGGAGGA+AGG | - | chr5_4:18555243-18555262 | Msa0841820:intron | 70.0% | |
| GTGCTCGCCTGAGCTCCACC+AGG | + | chr5_4:18555722-18555741 | None:intergenic | 70.0% | |
| CATGGCCCTGGGAGCTGTGG+AGG | + | chr5_4:18559549-18559568 | None:intergenic | 70.0% | |
| CTCCACAGCTCCCAGGGCCA+TGG | - | chr5_4:18559547-18559566 | Msa0841820:intron | 70.0% | |
| CTCCATGGCCCTGGGAGCTG+TGG | + | chr5_4:18559552-18559571 | None:intergenic | 70.0% | |
| TCCGACGGCGGTGGCTACGG+AGG | - | chr5_4:18555236-18555255 | Msa0841820:intron | 75.0% | |
| GACGGCGGTGGCTACGGAGG+AGG | - | chr5_4:18555239-18555258 | Msa0841820:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 18554457 | 18560213 | 18554457 | ID=Msa0841820;Name=Msa0841820 |
| chr5_4 | mRNA | 18554457 | 18560213 | 18554457 | ID=Msa0841820-mRNA-1;Parent=Msa0841820;Name=Msa0841820-mRNA-1;_AED=0.14;_eAED=0.14;_QI=183|0.71|0.87|1|0.71|0.62|8|476|391 |
| chr5_4 | exon | 18554457 | 18555115 | 18554457 | ID=Msa0841820-mRNA-1:exon:7764;Parent=Msa0841820-mRNA-1 |
| chr5_4 | exon | 18555335 | 18555357 | 18555335 | ID=Msa0841820-mRNA-1:exon:7763;Parent=Msa0841820-mRNA-1 |
| chr5_4 | exon | 18555944 | 18556005 | 18555944 | ID=Msa0841820-mRNA-1:exon:7762;Parent=Msa0841820-mRNA-1 |
| chr5_4 | exon | 18558199 | 18558340 | 18558199 | ID=Msa0841820-mRNA-1:exon:7761;Parent=Msa0841820-mRNA-1 |
| chr5_4 | exon | 18558448 | 18558677 | 18558448 | ID=Msa0841820-mRNA-1:exon:7760;Parent=Msa0841820-mRNA-1 |
| chr5_4 | exon | 18558815 | 18558999 | 18558815 | ID=Msa0841820-mRNA-1:exon:7759;Parent=Msa0841820-mRNA-1 |
| chr5_4 | exon | 18559089 | 18559478 | 18559089 | ID=Msa0841820-mRNA-1:exon:7758;Parent=Msa0841820-mRNA-1 |
| chr5_4 | exon | 18560070 | 18560213 | 18560070 | ID=Msa0841820-mRNA-1:exon:7757;Parent=Msa0841820-mRNA-1 |
| chr5_4 | five_prime_UTR | 18560070 | 18560213 | 18560070 | ID=Msa0841820-mRNA-1:five_prime_utr;Parent=Msa0841820-mRNA-1 |
| chr5_4 | five_prime_UTR | 18559440 | 18559478 | 18559440 | ID=Msa0841820-mRNA-1:five_prime_utr;Parent=Msa0841820-mRNA-1 |
| chr5_4 | CDS | 18559089 | 18559439 | 18559089 | ID=Msa0841820-mRNA-1:cds;Parent=Msa0841820-mRNA-1 |
| chr5_4 | CDS | 18558815 | 18558999 | 18558815 | ID=Msa0841820-mRNA-1:cds;Parent=Msa0841820-mRNA-1 |
| chr5_4 | CDS | 18558448 | 18558677 | 18558448 | ID=Msa0841820-mRNA-1:cds;Parent=Msa0841820-mRNA-1 |
| chr5_4 | CDS | 18558199 | 18558340 | 18558199 | ID=Msa0841820-mRNA-1:cds;Parent=Msa0841820-mRNA-1 |
| chr5_4 | CDS | 18555944 | 18556005 | 18555944 | ID=Msa0841820-mRNA-1:cds;Parent=Msa0841820-mRNA-1 |
| chr5_4 | CDS | 18555335 | 18555357 | 18555335 | ID=Msa0841820-mRNA-1:cds;Parent=Msa0841820-mRNA-1 |
| chr5_4 | CDS | 18554933 | 18555115 | 18554933 | ID=Msa0841820-mRNA-1:cds;Parent=Msa0841820-mRNA-1 |
| chr5_4 | three_prime_UTR | 18554457 | 18554932 | 18554457 | ID=Msa0841820-mRNA-1:three_prime_utr;Parent=Msa0841820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
