AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0807000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807000 MtrunA17_Chr5g0394341 96.038 530 12 2 1 530 1 521 0.0 1028
Msa0807000 MtrunA17_Chr1g0205691 82.685 514 88 1 1 513 1 514 0.0 837
Msa0807000 MtrunA17_Chr1g0205671 72.655 501 133 3 1 499 1 499 0.0 750
Msa0807000 MtrunA17_Chr1g0205681 72.854 501 133 2 1 499 1 500 0.0 748
Msa0807000 MtrunA17_Chr5g0445601 59.091 506 197 5 1 501 1 501 0.0 610
Msa0807000 MtrunA17_Chr4g0065311 57.085 494 207 4 5 498 4 492 0.0 602
Msa0807000 MtrunA17_Chr3g0078971 56.313 499 214 4 9 506 10 505 0.0 597
Msa0807000 MtrunA17_Chr7g0257631 58.135 504 199 6 1 498 35 532 0.0 595
Msa0807000 MtrunA17_Chr5g0437021 56.556 511 215 4 2 508 3 510 0.0 589
Msa0807000 MtrunA17_Chr4g0065324 55.400 500 217 6 3 501 9 503 0.0 577
Msa0807000 MtrunA17_Chr4g0048411 60.198 505 196 4 13 514 14 516 0.0 573
Msa0807000 MtrunA17_Chr1g0164871 56.031 514 215 6 1 507 1 510 0.0 571
Msa0807000 MtrunA17_Chr1g0164851 56.262 503 215 4 1 501 1 500 0.0 571
Msa0807000 MtrunA17_Chr8g0390261 55.000 500 218 6 14 512 18 511 0.0 561
Msa0807000 MtrunA17_Chr6g0486681 56.324 506 212 6 1 501 1 502 0.0 560
Msa0807000 MtrunA17_Chr6g0486671 56.324 506 212 6 1 501 1 502 0.0 560
Msa0807000 MtrunA17_Chr3g0078991 53.862 492 222 5 16 505 17 505 0.0 550
Msa0807000 MtrunA17_Chr5g0417611 54.781 502 223 3 1 499 1 501 0.0 549
Msa0807000 MtrunA17_Chr3g0128081 54.134 508 228 3 1 504 1 507 0.0 544
Msa0807000 MtrunA17_Chr5g0420841 52.778 504 235 2 10 511 9 511 0.0 543
Msa0807000 MtrunA17_Chr8g0390141 53.131 495 225 6 14 506 18 507 0.0 541
Msa0807000 MtrunA17_Chr4g0048051 56.634 505 212 5 1 501 1 502 0.0 533
Msa0807000 MtrunA17_Chr3g0085971 52.314 497 234 2 13 507 12 507 0.0 526
Msa0807000 MtrunA17_Chr3g0115741 48.738 515 248 9 1 505 1 509 0.0 518
Msa0807000 MtrunA17_Chr3g0115781 49.219 512 246 9 1 505 1 505 4.27e-179 513
Msa0807000 MtrunA17_Chr3g0115721 49.219 512 249 8 1 507 1 506 5.29e-179 513
Msa0807000 MtrunA17_Chr3g0115711 48.708 503 248 7 1 499 1 497 3.88e-177 508
Msa0807000 MtrunA17_Chr3g0115751 49.898 489 235 7 17 501 23 505 4.34e-177 508
Msa0807000 MtrunA17_Chr3g0128171 53.982 452 204 3 49 497 1 451 6.46e-166 478
Msa0807000 MtrunA17_Chr3g0078791 50.459 436 193 3 71 504 16 430 4.71e-153 444
Msa0807000 MtrunA17_Chr3g0115731 44.681 517 240 12 1 505 1 483 5.73e-153 446
Msa0807000 MtrunA17_Chr4g0065351 56.977 344 145 3 161 504 1 341 2.61e-145 422
Msa0807000 MtrunA17_Chr6g0485661 29.806 463 286 10 27 476 63 499 3.33e-58 201
Msa0807000 MtrunA17_Chr1g0213611 29.652 489 315 8 20 499 76 544 1.04e-57 201
Msa0807000 MtrunA17_Chr4g0034681 28.571 525 319 11 13 509 17 513 1.29e-57 200
Msa0807000 MtrunA17_Chr3g0115771 35.032 314 156 7 151 461 5 273 5.10e-57 191
Msa0807000 MtrunA17_Chr7g0214451 30.435 483 294 13 20 491 31 482 2.13e-56 196
Msa0807000 MtrunA17_Chr4g0036021 28.131 519 320 11 26 524 31 516 1.07e-55 195
Msa0807000 MtrunA17_Chr3g0144361 28.800 500 300 11 13 483 15 487 2.57e-55 194
Msa0807000 MtrunA17_Chr1g0213631 31.144 411 268 9 108 511 53 455 5.39e-53 186
Msa0807000 MtrunA17_Chr8g0390521 27.235 481 310 8 17 483 13 467 2.35e-51 182
Msa0807000 MtrunA17_Chr2g0303731 33.693 371 216 9 20 382 24 372 1.09e-50 182
Msa0807000 MtrunA17_Chr5g0432581 27.788 529 319 13 12 513 6 498 4.75e-50 179
Msa0807000 MtrunA17_Chr4g0021771 26.531 490 317 12 23 499 55 514 1.75e-49 178
Msa0807000 MtrunA17_Chr8g0373531 30.118 425 268 7 83 483 59 478 9.63e-49 176
Msa0807000 MtrunA17_Chr8g0376631 34.118 340 197 7 20 352 24 343 5.11e-48 175
Msa0807000 MtrunA17_Chr2g0303701 33.333 354 208 7 20 367 24 355 5.17e-47 172
Msa0807000 MtrunA17_Chr4g0032021 29.363 487 299 12 22 489 96 556 5.17e-47 172
Msa0807000 MtrunA17_Chr2g0282031 26.695 472 307 10 23 483 53 496 1.34e-46 170
Msa0807000 MtrunA17_Chr8g0376601 32.659 346 202 8 16 352 20 343 2.30e-46 170
Msa0807000 MtrunA17_Chr6g0457781 28.033 478 305 11 12 486 99 540 1.00e-45 168
Msa0807000 MtrunA17_Chr4g0039651 28.099 484 298 11 23 486 46 499 1.08e-45 167
Msa0807000 MtrunA17_Chr4g0065341 51.429 140 66 1 13 152 18 155 8.13e-44 153
Msa0807000 MtrunA17_Chr2g0290181 29.500 400 240 8 1 382 1 376 2.45e-43 162
Msa0807000 MtrunA17_Chr7g0250881 28.092 477 306 11 12 486 59 500 2.50e-43 161
Msa0807000 MtrunA17_Chr8g0376611 37.402 254 146 5 108 352 27 276 5.58e-43 160
Msa0807000 MtrunA17_Chr8g0373181 29.710 414 279 5 73 483 77 481 1.03e-42 159
Msa0807000 MtrunA17_Chr7g0273281 27.612 402 276 5 84 483 103 491 4.45e-42 157
Msa0807000 MtrunA17_Chr1g0155221 29.325 474 296 11 19 485 45 486 2.18e-39 149
Msa0807000 MtrunA17_Chr5g0446681 43.005 193 73 2 1 193 1 156 3.01e-38 142
Msa0807000 MtrunA17_Chr5g0446681 49.669 151 71 2 358 504 136 285 1.37e-36 137
Msa0807000 MtrunA17_Chr5g0403831 27.739 429 288 7 76 483 64 491 6.93e-38 145
Msa0807000 MtrunA17_Chr8g0373191 30.423 355 231 7 134 483 110 453 1.94e-36 140
Msa0807000 MtrunA17_Chr4g0066581 27.137 468 300 9 21 483 51 482 1.31e-35 139
Msa0807000 MtrunA17_Chr7g0259471 25.799 407 287 5 83 487 80 473 1.94e-35 138
Msa0807000 MtrunA17_Chr4g0004821 25.277 451 316 8 46 491 42 476 2.78e-35 138
Msa0807000 MtrunA17_Chr6g0486021 26.972 393 273 6 93 483 102 482 6.51e-35 137
Msa0807000 MtrunA17_Chr2g0286721 26.652 469 301 12 21 483 48 479 1.63e-34 135
Msa0807000 MtrunA17_Chr3g0119401 26.013 469 302 14 27 486 98 530 2.44e-34 136
Msa0807000 MtrunA17_Chr3g0121674 28.247 308 207 7 205 507 2 300 4.28e-33 128
Msa0807000 MtrunA17_Chr2g0290161 30.068 296 162 7 99 381 19 282 1.98e-32 130
Msa0807000 MtrunA17_Chr7g0259221 25.307 407 289 5 83 487 82 475 8.31e-32 128
Msa0807000 MtrunA17_Chr7g0228781 39.429 175 71 3 13 152 29 203 8.30e-30 116
Msa0807000 MtrunA17_Chr3g0115761 47.059 119 59 2 49 166 1 116 4.15e-25 100
Msa0807000 MtrunA17_Chr5g0434231 32.022 178 95 2 81 258 3 154 1.38e-21 91.3
Msa0807000 MtrunA17_Chr7g0273261 26.182 275 169 5 257 530 17 258 1.27e-19 88.6
Msa0807000 MtrunA17_Chr3g0144261 35.443 158 96 3 107 261 68 222 1.28e-18 89.7
Msa0807000 MtrunA17_Chr3g0144261 26.693 251 154 8 257 485 473 715 1.84e-12 70.1
Msa0807000 MtrunA17_Chr3g0146061 32.903 155 102 2 108 261 71 224 2.01e-17 85.9
Msa0807000 MtrunA17_Chr3g0146061 25.397 252 156 9 257 485 483 725 1.99e-11 66.6
Msa0807000 MtrunA17_Chr5g0419321 30.000 180 120 3 84 260 75 251 7.41e-17 84.0
Msa0807000 MtrunA17_Chr5g0419321 28.326 233 148 4 264 485 509 733 9.63e-11 64.7
Msa0807000 MtrunA17_Chr5g0404191 30.808 198 128 3 84 279 91 281 4.98e-16 79.0
Msa0807000 MtrunA17_Chr8g0370141 26.860 242 153 7 84 304 47 285 6.67e-16 79.7
Msa0807000 MtrunA17_Chr5g0407441 26.337 243 152 7 22 260 4 223 2.07e-15 79.3
Msa0807000 MtrunA17_Chr6g0450271 34.959 123 69 4 239 352 32 152 3.27e-13 69.7
Msa0807000 MtrunA17_Chr8g0370151 28.947 228 145 5 269 485 125 346 4.14e-13 70.9
Msa0807000 MtrunA17_Chr5g0434241 36.364 99 58 3 256 352 1 96 8.18e-12 62.4
Msa0807000 MtrunA17_Chr7g0273271 27.014 211 126 4 19 229 24 206 1.88e-11 63.9
Msa0807000 MtrunA17_Chr6g0450291 36.364 99 58 3 256 352 1 96 6.51e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807000 AT5G26340.1 81.733 531 91 3 1 530 1 526 0.0 895
Msa0807000 AT4G02050.2 58.627 510 201 5 1 505 1 505 0.0 622
Msa0807000 AT4G02050.1 58.627 510 201 5 1 505 1 505 0.0 622
Msa0807000 AT1G11260.1 58.661 508 204 5 1 504 1 506 0.0 600
Msa0807000 AT1G50310.1 58.642 486 196 5 18 501 21 503 0.0 593
Msa0807000 AT5G26250.1 60.685 496 189 4 13 506 13 504 0.0 592
Msa0807000 AT3G19940.1 57.320 485 203 4 18 501 21 502 0.0 585
Msa0807000 AT3G05960.1 59.719 499 195 4 14 510 13 507 0.0 581
Msa0807000 AT5G23270.1 58.600 500 203 3 1 497 1 499 0.0 581
Msa0807000 AT1G77210.2 56.719 506 208 8 1 500 1 501 0.0 575
Msa0807000 AT1G77210.1 56.719 506 208 8 1 500 1 501 0.0 575
Msa0807000 AT4G21480.1 57.895 494 200 5 9 499 10 498 0.0 559
Msa0807000 AT3G19930.1 53.033 511 235 4 1 509 1 508 0.0 553
Msa0807000 AT3G19930.2 53.033 511 235 4 1 509 1 508 0.0 553
Msa0807000 AT1G34580.1 48.915 507 246 7 1 499 1 502 2.61e-176 506
Msa0807000 AT1G07340.1 52.333 493 230 3 9 500 10 498 9.04e-174 500
Msa0807000 AT5G61520.1 48.089 497 246 7 16 506 18 508 3.52e-162 471
Msa0807000 AT1G34580.2 47.702 457 228 6 49 499 1 452 6.11e-154 447
Msa0807000 AT1G50310.2 57.102 352 147 4 152 501 11 360 2.49e-149 433
Msa0807000 AT5G61520.2 46.882 465 235 7 48 506 2 460 2.03e-145 426
Msa0807000 AT1G77210.3 57.714 350 144 4 152 500 6 352 6.43e-144 418
Msa0807000 AT2G16120.1 30.040 506 303 10 26 507 30 508 4.02e-58 201
Msa0807000 AT2G16130.1 29.876 482 288 9 26 483 30 485 7.95e-58 201
Msa0807000 AT3G18830.1 27.672 524 333 8 26 529 40 537 2.23e-56 197
Msa0807000 AT2G18480.1 30.149 471 283 11 36 485 36 481 1.52e-55 194
Msa0807000 AT4G36670.1 30.539 501 287 14 12 483 7 475 5.33e-55 192
Msa0807000 AT2G43330.1 29.387 473 302 10 26 491 35 482 2.77e-53 188
Msa0807000 AT1G30220.1 32.075 371 220 8 20 381 26 373 2.58e-51 184
Msa0807000 AT5G59250.1 31.907 514 296 15 3 489 72 558 1.22e-49 179
Msa0807000 AT1G08930.1 30.608 477 287 11 13 483 49 487 1.64e-45 167
Msa0807000 AT1G08930.2 30.608 477 287 11 13 483 49 487 1.64e-45 167
Msa0807000 AT2G20780.1 26.427 473 305 10 23 483 55 496 1.59e-44 165
Msa0807000 AT2G20780.2 27.670 412 277 7 83 483 37 438 7.03e-44 162
Msa0807000 AT5G16150.2 27.368 475 307 10 12 483 99 538 2.81e-43 162
Msa0807000 AT5G16150.1 27.368 475 307 10 12 483 99 538 2.81e-43 162
Msa0807000 AT5G16150.3 27.368 475 307 10 12 483 99 538 2.81e-43 162
Msa0807000 AT4G16480.2 33.429 347 195 7 19 352 24 347 2.92e-43 162
Msa0807000 AT4G16480.3 33.429 347 195 7 19 352 24 347 2.92e-43 162
Msa0807000 AT4G16480.1 33.429 347 195 7 19 352 24 347 2.92e-43 162
Msa0807000 AT3G05400.1 27.484 473 303 9 15 483 19 455 4.92e-43 159
Msa0807000 AT1G08890.1 29.707 478 294 11 15 487 20 460 1.02e-42 159
Msa0807000 AT3G05165.3 26.526 475 305 8 15 483 23 459 1.15e-41 156
Msa0807000 AT3G05165.2 26.526 475 305 8 15 483 23 459 1.15e-41 156
Msa0807000 AT3G05165.1 26.526 475 305 8 15 483 23 459 1.15e-41 156
Msa0807000 AT1G75220.1 29.149 470 297 10 19 483 44 482 1.26e-41 156
Msa0807000 AT5G27350.1 27.984 486 302 11 13 490 22 467 1.78e-41 155
Msa0807000 AT5G17010.1 28.571 483 297 17 23 486 48 501 9.06e-41 154
Msa0807000 AT5G17010.3 28.571 483 297 17 23 486 48 501 9.06e-41 154
Msa0807000 AT5G17010.4 28.571 483 297 17 23 486 48 501 9.06e-41 154
Msa0807000 AT3G05155.1 27.215 474 307 10 15 486 20 457 1.43e-40 152
Msa0807000 AT1G08900.5 29.925 401 266 6 85 483 25 412 1.50e-40 152
Msa0807000 AT1G08900.3 29.925 401 266 6 85 483 59 446 3.53e-40 151
Msa0807000 AT1G08900.1 29.925 401 266 6 85 483 67 454 3.74e-40 151
Msa0807000 AT1G08900.2 29.925 401 266 6 85 483 67 454 3.74e-40 151
Msa0807000 AT2G35740.1 29.223 373 233 8 20 382 24 375 6.78e-40 153
Msa0807000 AT3G05160.1 26.050 476 306 9 15 483 14 450 9.15e-39 147
Msa0807000 AT5G27360.1 26.250 480 318 8 13 490 26 471 1.47e-38 147
Msa0807000 AT3G05150.2 28.425 489 309 13 11 492 24 478 3.04e-38 147
Msa0807000 AT3G03090.1 28.333 480 288 17 30 486 55 501 3.94e-38 147
Msa0807000 AT5G27360.3 26.250 480 318 8 13 490 74 519 5.50e-38 147
Msa0807000 AT3G05160.3 27.586 406 269 7 85 483 14 401 5.98e-38 144
Msa0807000 AT3G05160.2 27.586 406 269 7 85 483 14 401 5.98e-38 144
Msa0807000 AT3G05150.1 28.361 476 304 12 11 483 24 465 7.86e-38 145
Msa0807000 AT3G05150.3 28.361 476 304 12 11 483 24 465 7.86e-38 145
Msa0807000 AT3G05400.2 30.108 372 234 8 123 483 79 435 4.06e-37 142
Msa0807000 AT1G05030.1 26.681 461 301 12 28 483 85 513 1.60e-36 142
Msa0807000 AT1G19450.1 27.601 471 303 10 19 483 45 483 1.68e-36 142
Msa0807000 AT2G48020.2 25.806 403 284 5 83 483 68 457 1.88e-36 141
Msa0807000 AT2G48020.1 25.806 403 284 5 83 483 68 457 1.88e-36 141
Msa0807000 AT3G05165.4 27.078 421 262 9 15 428 23 405 3.36e-36 140
Msa0807000 AT3G05165.5 27.078 421 262 9 15 428 23 405 3.36e-36 140
Msa0807000 AT3G05165.6 27.078 421 262 9 15 428 23 405 3.54e-36 141
Msa0807000 AT5G18840.1 28.125 416 273 7 83 490 84 481 4.59e-36 140
Msa0807000 AT1G08920.1 26.850 473 306 10 15 483 25 461 9.83e-36 139
Msa0807000 AT1G05030.2 27.073 410 282 9 79 483 64 461 1.04e-35 139
Msa0807000 AT1G54730.2 27.475 404 276 7 83 483 72 461 6.34e-34 134
Msa0807000 AT1G79820.2 26.667 405 277 7 84 483 97 486 1.31e-33 134
Msa0807000 AT1G79820.1 26.667 405 277 7 84 483 97 486 1.31e-33 134
Msa0807000 AT1G08920.2 26.458 480 306 11 15 483 25 468 2.02e-33 133
Msa0807000 AT4G04760.3 28.325 406 273 7 83 483 12 404 2.38e-33 132
Msa0807000 AT4G04750.3 27.559 381 259 6 107 483 144 511 2.58e-33 133
Msa0807000 AT1G08900.4 29.167 360 240 6 85 442 67 413 2.74e-33 132
Msa0807000 AT4G04750.1 27.720 386 252 6 107 483 100 467 3.59e-33 132
Msa0807000 AT4G04750.2 27.720 386 252 6 107 483 100 467 3.59e-33 132
Msa0807000 AT4G04760.1 28.325 406 273 7 83 483 71 463 3.80e-33 132
Msa0807000 AT5G27360.2 26.849 365 252 6 128 490 16 367 2.80e-32 127
Msa0807000 AT5G27360.5 26.849 365 252 6 128 490 16 367 2.80e-32 127
Msa0807000 AT1G08920.3 26.606 436 280 10 15 446 25 424 2.84e-32 129
Msa0807000 AT1G67300.2 24.873 394 283 6 93 483 103 486 1.75e-31 127
Msa0807000 AT1G67300.1 25.063 395 280 7 93 483 103 485 4.58e-31 126
Msa0807000 AT1G67300.3 25.063 395 280 7 93 483 103 485 4.58e-31 126
Msa0807000 AT1G67300.6 24.650 357 252 7 93 446 103 445 1.57e-30 124
Msa0807000 AT1G67300.7 24.650 357 252 7 93 446 103 445 1.57e-30 124
Msa0807000 AT1G79820.4 26.074 349 245 5 84 431 97 433 4.98e-30 122
Msa0807000 AT1G54730.3 25.414 362 255 5 83 442 72 420 5.45e-30 122
Msa0807000 AT1G67300.4 25.301 332 233 6 93 421 103 422 6.81e-30 122
Msa0807000 AT1G67300.5 25.301 332 233 6 93 421 103 422 6.81e-30 122
Msa0807000 AT5G27360.4 26.098 410 267 8 13 420 26 401 1.97e-29 120
Msa0807000 AT4G04760.2 26.847 406 276 7 83 483 71 460 9.47e-28 116
Msa0807000 AT1G54730.5 26.303 403 261 9 83 483 72 440 1.71e-27 115
Msa0807000 AT3G05155.2 27.219 338 212 8 16 352 21 325 9.65e-27 111
Msa0807000 AT3G20460.1 25.662 491 309 16 5 483 36 482 8.91e-26 110
Msa0807000 AT1G54730.9 26.901 342 233 7 83 421 72 399 3.57e-25 108
Msa0807000 AT1G54730.7 26.901 342 233 7 83 421 72 399 3.57e-25 108
Msa0807000 AT1G54730.11 28.413 271 182 4 84 352 73 333 2.05e-24 104
Msa0807000 AT2G48020.4 27.425 299 205 4 83 379 68 356 2.99e-24 105
Msa0807000 AT1G54730.4 25.414 362 234 9 83 442 72 399 1.20e-23 103
Msa0807000 AT2G48020.3 28.676 272 182 4 83 352 68 329 1.91e-22 99.4
Msa0807000 AT1G54730.10 27.236 246 170 3 84 327 73 311 1.70e-21 95.9
Msa0807000 AT1G54730.6 27.236 246 170 3 84 327 73 311 1.70e-21 95.9
Msa0807000 AT1G54730.8 27.236 246 170 3 83 326 72 310 6.64e-21 95.1
Msa0807000 AT1G79820.3 23.951 405 240 8 84 483 97 438 3.03e-20 94.0
Msa0807000 AT5G17010.2 24.948 481 257 18 23 486 45 438 6.43e-20 92.8
Msa0807000 AT3G51490.1 27.016 248 158 7 22 267 4 230 8.46e-18 87.4
Msa0807000 AT3G51490.2 27.016 248 158 7 22 267 4 230 9.56e-18 87.4
Msa0807000 AT3G51490.2 26.230 244 151 6 260 485 486 718 4.41e-14 75.5
Msa0807000 AT3G51490.3 29.508 183 126 3 88 269 2 182 1.64e-17 86.3
Msa0807000 AT3G51490.3 26.230 244 151 6 260 485 436 668 4.28e-14 75.5
Msa0807000 AT1G79820.5 24.110 365 203 8 127 483 78 376 4.99e-17 83.6
Msa0807000 AT4G35300.9 31.481 162 109 2 107 267 70 230 4.64e-16 82.0
Msa0807000 AT4G35300.2 31.481 162 109 2 107 267 70 230 4.64e-16 82.0
Msa0807000 AT4G35300.3 31.481 162 109 2 107 267 70 230 4.64e-16 82.0
Msa0807000 AT4G35300.4 31.481 162 109 2 107 267 70 230 5.07e-16 81.6
Msa0807000 AT4G35300.8 31.481 162 109 2 107 267 70 230 5.07e-16 81.6
Msa0807000 AT4G35300.6 31.481 162 109 2 107 267 70 230 5.07e-16 81.6
Msa0807000 AT4G35300.11 31.481 162 109 2 107 267 70 230 5.07e-16 81.6
Msa0807000 AT4G35300.1 31.481 162 109 2 107 267 70 230 5.07e-16 81.6
Msa0807000 AT4G35300.10 31.481 162 109 2 107 267 70 230 5.07e-16 81.6
Msa0807000 AT4G35300.7 31.481 162 109 2 107 267 70 230 5.07e-16 81.6
Msa0807000 AT1G20840.2 31.500 200 126 5 77 267 31 228 7.82e-16 81.3
Msa0807000 AT1G20840.1 31.500 200 126 5 77 267 31 228 7.82e-16 81.3

Find 146 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTATGATGTTGGTGTTTC+AGG 0.159582 5_3:-27734786 Msa0807000:intron
CTCTATTCAGCTGTGATTAC+TGG 0.172982 5_3:-27731027 Msa0807000:CDS
CGTCATAATTTCATGTATTA+TGG 0.203173 5_3:-27734832 Msa0807000:CDS
AATTCCCAGTTGTAAATTCT+TGG 0.207115 5_3:-27730409 Msa0807000:exon
TTTGCTAACCTTGTCAATTA+TGG 0.208906 5_3:-27732226 Msa0807000:CDS
GTCTGCCTTCGCTTGGTCTT+GGG 0.222884 5_3:-27730800 Msa0807000:CDS
TTGTGATCATGCAGAATTTC+AGG 0.239240 5_3:-27731570 Msa0807000:intron
CAACATTGAACCCGAGTTCT+TGG 0.266059 5_3:-27731391 Msa0807000:CDS
TTTATAAACTTTGGATAAGT+TGG 0.272677 5_3:+27735053 None:intergenic
TGTCTGCCTTCGCTTGGTCT+TGG 0.278420 5_3:-27730801 Msa0807000:CDS
GGAAACAATAATAATATATA+TGG 0.281507 5_3:-27730208 Msa0807000:three_prime_UTR
AATACTCATTTGGTATTTAC+CGG 0.282234 5_3:+27730382 None:intergenic
GTTGTAAATTCTTGGAATTC+CGG 0.291403 5_3:-27730401 Msa0807000:exon
CTCTCCGTCATTTCTTCAAT+TGG 0.295422 5_3:+27730553 None:intergenic
TCTTCTTGTTCTTCTCTGGC+TGG 0.298249 5_3:-27730630 Msa0807000:CDS
AAGAAATGACGGAGAGAGTA+TGG 0.302377 5_3:-27730546 Msa0807000:CDS
GGAATCTTCTTGTTCTTCTC+TGG 0.310304 5_3:-27730634 Msa0807000:CDS
ATGTTATGCAACTTCAAGTT+TGG 0.312039 5_3:-27730655 Msa0807000:CDS
GTCGTGATAGCAATCATTCT+TGG 0.343617 5_3:-27730901 Msa0807000:CDS
TCCTATACAACTCGTACATT+GGG 0.361220 5_3:-27733463 Msa0807000:CDS
TTGGAGACTATCTCTTGGTT+TGG 0.361405 5_3:-27731538 Msa0807000:CDS
CCGGCCATGGTTTGTTAGCT+AGG 0.361788 5_3:+27734909 None:intergenic
TTCCATAGACAAAATTTGTA+TGG 0.364591 5_3:+27730227 None:intergenic
TTGGTTCTGGAAGAGGTTTA+TGG 0.367480 5_3:-27730515 Msa0807000:CDS
AGAATTTACAACTGGGAATT+CGG 0.368074 5_3:+27730412 None:intergenic
GAGGCTTCGCCACGAGTGGC+GGG 0.369010 5_3:-27734884 Msa0807000:CDS
AGTGAGAAGAGAAGAGTTGT+TGG 0.374266 5_3:+27734988 None:intergenic
GAATTCCAAGAATTTACAAC+TGG 0.377660 5_3:+27730404 None:intergenic
CGTTTGAGAAGATTCCTAAA+AGG 0.377681 5_3:+27731327 None:intergenic
TATGGAAGCAACATTGGTTC+TGG 0.378484 5_3:-27730528 Msa0807000:CDS
AGACTCACCATGTTGATTGC+TGG 0.383024 5_3:-27733436 Msa0807000:CDS
AGTTAATGCAGCTAGGTATA+AGG 0.385835 5_3:+27733501 None:intergenic
CTTTCGTGTCTGCCTTCGCT+TGG 0.391512 5_3:-27730807 Msa0807000:CDS
TTATAAACTTTGGATAAGTT+GGG 0.392960 5_3:+27735054 None:intergenic
CCTCGCTCAATGAGACTGTT+GGG 0.394071 5_3:+27731462 None:intergenic
CTTCTTGTTCTTCTCTGGCT+GGG 0.396680 5_3:-27730629 Msa0807000:CDS
ATTGGTATGTTCTTCGTCTC+AGG 0.397276 5_3:+27730571 None:intergenic
GTTCACCTTTGTCATTGCTC+AGG 0.398780 5_3:-27730689 Msa0807000:CDS
CCATGAGTGCACCCACTGTT+AGG 0.399601 5_3:+27731496 None:intergenic
AACCTTGCCATGCTCATTGT+TGG 0.400156 5_3:-27733370 Msa0807000:CDS
ATACAGAAAGACAGTGTTAG+AGG 0.400944 5_3:-27733584 Msa0807000:CDS
GCAATTTCTGAGAGGAAAAC+TGG 0.403356 5_3:+27732313 None:intergenic
ATCTTACTTGGTTGTGGTGT+TGG 0.408209 5_3:-27733343 Msa0807000:CDS
AGACTATCTCTTGGTTTGGC+TGG 0.409374 5_3:-27731534 Msa0807000:CDS
GGCGAAGCCTCCGCCGGCCA+TGG 0.416696 5_3:+27734896 None:intergenic
CCTAACAGTGGGTGCACTCA+TGG 0.419887 5_3:-27731496 Msa0807000:CDS
ATCCTATACAACTCGTACAT+TGG 0.422729 5_3:-27733464 Msa0807000:CDS
AGCAACATTGGTTCTGGAAG+AGG 0.429089 5_3:-27730522 Msa0807000:CDS
CGTTGATGCCGGTGAATTGT+TGG 0.432613 5_3:+27731109 None:intergenic
TAGAGACTAAAATACTCATT+TGG 0.435991 5_3:+27730372 None:intergenic
CCCCAATGTACGAGTTGTAT+AGG 0.437683 5_3:+27733462 None:intergenic
ACTGTCTTTCTGTATACTGC+TGG 0.441904 5_3:+27733592 None:intergenic
GAGGTGGTATTTATAAACTT+TGG 0.442512 5_3:+27735044 None:intergenic
GGAGGCTTCGCCACGAGTGG+CGG 0.447870 5_3:-27734885 Msa0807000:CDS
GGCAGAATCTTACTTGGTTG+TGG 0.448889 5_3:-27733349 Msa0807000:CDS
TGGGGTTGGAGACTATCTCT+TGG 0.452302 5_3:-27731543 Msa0807000:CDS
GGAGCTTTGTGAGGCAAGTC+GGG 0.455707 5_3:-27731370 Msa0807000:CDS
AAAGCTCCACGAATTCTTGA+AGG 0.464569 5_3:+27732289 None:intergenic
GAAAGTATAGAGAGTGTTTG+AGG 0.466751 5_3:+27735025 None:intergenic
CCCACTGTTAGGAGAAGTGC+TGG 0.467123 5_3:+27731507 None:intergenic
GGTCTTGGGGTCCTCTCGGT+TGG 0.470775 5_3:-27730786 Msa0807000:CDS
ATTGTTGGCAGAATCTTACT+TGG 0.471393 5_3:-27733355 Msa0807000:CDS
CTTATGTTCGGTTATGATGT+TGG 0.471516 5_3:-27734795 Msa0807000:CDS
CAGTAATCACAGCTGAATAG+AGG 0.471861 5_3:+27731028 None:intergenic
TCCAGCTCAATGTCACCATT+GGG 0.476689 5_3:-27732255 Msa0807000:CDS
TTCCAGCTCAATGTCACCAT+TGG 0.476773 5_3:-27732256 Msa0807000:CDS
ACCTCGCTCAATGAGACTGT+TGG 0.477193 5_3:+27731461 None:intergenic
AGCAATCATTCTTGGGATCA+AGG 0.479075 5_3:-27730893 Msa0807000:CDS
TGAAAGATCGTCGGAATGAT+CGG 0.481000 5_3:+27730867 None:intergenic
CATGCAGAATTTCAGGTGGA+TGG 0.482057 5_3:-27731563 Msa0807000:intron
CTCACAAAGCTCCAAGAACT+CGG 0.482140 5_3:+27731380 None:intergenic
TCTGCCTTCGCTTGGTCTTG+GGG 0.483271 5_3:-27730799 Msa0807000:CDS
GAATTTCAGGTGGATGGGGT+TGG 0.483636 5_3:-27731557 Msa0807000:CDS
TGGAGCTTTGTGAGGCAAGT+CGG 0.484225 5_3:-27731371 Msa0807000:CDS
AAACATGATCGCGTTGATGC+CGG 0.485208 5_3:+27731098 None:intergenic
TCGTGATAGCAATCATTCTT+GGG 0.491265 5_3:-27730900 Msa0807000:CDS
GCTTGGTCTTGGGGTCCTCT+CGG 0.491457 5_3:-27730790 Msa0807000:CDS
GGCTTCGCCACGAGTGGCGG+GGG 0.492080 5_3:-27734882 Msa0807000:CDS
AGTTTAATTTAAGCTATACA+TGG 0.495407 5_3:-27730303 Msa0807000:three_prime_UTR
GCTACCGGTGGTCTTATGTT+CGG 0.496699 5_3:-27734807 Msa0807000:CDS
TACTGCAAATATGATAATCA+AGG 0.498116 5_3:-27733544 Msa0807000:CDS
GTGAGAAGAGAAGAGTTGTT+GGG 0.500023 5_3:+27734989 None:intergenic
ATGCAGAATTTCAGGTGGAT+GGG 0.500388 5_3:-27731562 Msa0807000:intron
CATTCCGACGATCTTTCAAA+AGG 0.506626 5_3:-27730862 Msa0807000:CDS
GGCAAGTCGGGTTGCTAAAG+AGG 0.509254 5_3:-27731358 Msa0807000:CDS
CCACTCGAGACTCGATCAGC+TGG 0.513496 5_3:-27730742 Msa0807000:CDS
TGCAGAATTTCAGGTGGATG+GGG 0.517632 5_3:-27731561 Msa0807000:intron
TCCCAATGGTGACATTGAGC+TGG 0.520153 5_3:+27732254 None:intergenic
AGAAAGACAGTGTTAGAGGC+AGG 0.525310 5_3:-27733580 Msa0807000:CDS
TACTTGTAATGCGATGGAAA+TGG 0.527060 5_3:+27731284 None:intergenic
TCATGTATTATGGCTGCTAC+CGG 0.531696 5_3:-27734822 Msa0807000:CDS
CTCGCTCAATGAGACTGTTG+GGG 0.532113 5_3:+27731463 None:intergenic
ACTCGTGGCGAAGCCTCCGC+CGG 0.537860 5_3:+27734890 None:intergenic
AGGCTTCGCCACGAGTGGCG+GGG 0.539960 5_3:-27734883 Msa0807000:CDS
TAACAAACCATGGCCGGCGG+AGG 0.542312 5_3:-27734903 Msa0807000:exon
GGCGGAGGCTTCGCCACGAG+TGG 0.543900 5_3:-27734888 Msa0807000:CDS
GAGCGAGGTCGCATTGAAGA+AGG 0.548063 5_3:-27731447 Msa0807000:CDS
TCGAGTGGAAATGTCTCACT+TGG 0.551130 5_3:+27730757 None:intergenic
CGAGTTCTTGGAGCTTTGTG+AGG 0.551421 5_3:-27731379 Msa0807000:CDS
ATCTACTCAGTCGATAAACT+TGG 0.551896 5_3:-27730973 Msa0807000:CDS
CGTATGTTGCTGTTGGAAGC+CGG 0.555363 5_3:-27730946 Msa0807000:CDS
TGGTCGTCGTATGTTGCTGT+TGG 0.558566 5_3:-27730953 Msa0807000:CDS
ATTGCACCTTCAAGAATTCG+TGG 0.560498 5_3:-27732295 Msa0807000:CDS
AGAGAGTATGGAAGCAACAT+TGG 0.564824 5_3:-27730534 Msa0807000:CDS
AGTACTTACTTGTAATGCGA+TGG 0.565746 5_3:+27731278 None:intergenic
CCTAGCTAACAAACCATGGC+CGG 0.567190 5_3:-27734909 Msa0807000:exon
ACAAAGAAGAAACAGGGAAG+AGG 0.571061 5_3:+27730262 None:intergenic
CCAGTGTTGTTCAATACAGT+GGG 0.572265 5_3:-27731069 Msa0807000:CDS
CTGTCTTTCTGTATACTGCT+GGG 0.578586 5_3:+27733593 None:intergenic
CATACCAATTGAAGAAATGA+CGG 0.586307 5_3:-27730557 Msa0807000:CDS
AGTAATCACAGCTGAATAGA+GGG 0.588357 5_3:+27731029 None:intergenic
ATACATGAAATTATGACGAT+CGG 0.588772 5_3:+27734837 None:intergenic
AGTGGGTGCACTCATGGTTG+TGG 0.597960 5_3:-27731490 Msa0807000:CDS
TGCCAACAATGAGCATGGCA+AGG 0.598518 5_3:+27733368 None:intergenic
TGTATTATGGCTGCTACCGG+TGG 0.607194 5_3:-27734819 Msa0807000:CDS
CAGGTATTCCAACAATTCAC+CGG 0.608134 5_3:-27731117 Msa0807000:CDS
TCACAAAGCTCCAAGAACTC+GGG 0.610273 5_3:+27731381 None:intergenic
AGACAAGAACATTTGTACAC+CGG 0.613737 5_3:+27730927 None:intergenic
CCAGCTGATCGAGTCTCGAG+TGG 0.616370 5_3:+27730742 None:intergenic
CCCACTGTATTGAACAACAC+TGG 0.617307 5_3:+27731069 None:intergenic
ACCAGTGTTGTTCAATACAG+TGG 0.620613 5_3:-27731070 Msa0807000:CDS
TGTTAGTGCCATAATTGACA+AGG 0.626375 5_3:+27732218 None:intergenic
GATTCTGCCAACAATGAGCA+TGG 0.628326 5_3:+27733363 None:intergenic
CCAGCACTTCTCCTAACAGT+GGG 0.629032 5_3:-27731507 Msa0807000:CDS
AGGACCCCAAGACCAAGCGA+AGG 0.640865 5_3:+27730795 None:intergenic
TTGAAGGTGCAATTTCTGAG+AGG 0.640916 5_3:+27732305 None:intergenic
TGGAAATGGTAAGTTGAGGT+CGG 0.643846 5_3:+27731298 None:intergenic
CCCAGCACTTCTCCTAACAG+TGG 0.646885 5_3:-27731508 Msa0807000:CDS
CAAACCTAGCTAACAAACCA+TGG 0.649979 5_3:-27734913 Msa0807000:exon
TGATCATGCAGAATTTCAGG+TGG 0.654493 5_3:-27731567 Msa0807000:intron
CCTATACAACTCGTACATTG+GGG 0.657216 5_3:-27733462 Msa0807000:CDS
GTTAGCAAACAAAATCCCAA+TGG 0.659156 5_3:+27732240 None:intergenic
AGCTAACAAACCATGGCCGG+CGG 0.659283 5_3:-27734906 Msa0807000:exon
AAAAGCCTGAGCAATGACAA+AGG 0.659672 5_3:+27730684 None:intergenic
AGTATAGAGAGTGTTTGAGG+TGG 0.660738 5_3:+27735028 None:intergenic
GCGATGGAAATGGTAAGTTG+AGG 0.663464 5_3:+27731294 None:intergenic
CCCAACAGTCTCATTGAGCG+AGG 0.665093 5_3:-27731462 Msa0807000:CDS
AATTCCAAGAATTTACAACT+GGG 0.665521 5_3:+27730405 None:intergenic
AAGTTGAAGTTAATGCAGCT+AGG 0.666109 5_3:+27733494 None:intergenic
TGAGTAGATAGACACAATTG+TGG 0.671515 5_3:+27730987 None:intergenic
AGATAGACACAATTGTGGAG+AGG 0.673901 5_3:+27730992 None:intergenic
TCGCTCAATGAGACTGTTGG+GGG 0.680548 5_3:+27731464 None:intergenic
ATAACCGAACATAAGACCAC+CGG 0.680970 5_3:+27734803 None:intergenic
CCACTGTTAGGAGAAGTGCT+GGG 0.708624 5_3:+27731508 None:intergenic
GGTTGTGAATCAATGCAATG+AGG 0.740302 5_3:+27734952 None:intergenic
CTTGGAATAAGCCAACCGAG+AGG 0.779255 5_3:+27730775 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATAATAATAATAA+TGG - chr5_3:27734780-27734799 Msa0807000:intron 0.0%
!!! ATAATGTTTTTTTTATCTTT+TGG + chr5_3:27731130-27731149 None:intergenic 10.0%
!!! ATATAAAATCAACAAAATTT+TGG - chr5_3:27733177-27733196 Msa0807000:intron 10.0%
!!! TTATTATTATTTTTGATCTT+AGG + chr5_3:27734774-27734793 None:intergenic 10.0%
!! ACTAATATAAAATACATGTA+GGG + chr5_3:27730574-27730593 None:intergenic 15.0%
!! AACTAATATAAAATACATGT+AGG + chr5_3:27730575-27730594 None:intergenic 15.0%
!! AAAAGTTGAATGTATTTATT+TGG - chr5_3:27730777-27730796 Msa0807000:CDS 15.0%
!!! TTAGTTGTAATTTGTAAATT+GGG - chr5_3:27730934-27730953 Msa0807000:CDS 15.0%
!!! CTATATAACATATTTTATTG+TGG - chr5_3:27732286-27732305 Msa0807000:CDS 15.0%
!!! ATTATTTTTAGTTTGAACTT+AGG - chr5_3:27732337-27732356 Msa0807000:intron 15.0%
!! TATGAAAAGAATCAAAATTA+AGG + chr5_3:27732693-27732712 None:intergenic 15.0%
!!! GTATCTTACTAAATTATTTT+TGG - chr5_3:27732866-27732885 Msa0807000:intron 15.0%
!!! ATTTTTGGTTAATTTATCAT+AGG - chr5_3:27732881-27732900 Msa0807000:intron 15.0%
!!! GACTTTTAGTTATTAATTTA+TGG + chr5_3:27733224-27733243 None:intergenic 15.0%
!!! AAAAAATATGTTACTTTCAA+GGG + chr5_3:27733412-27733431 None:intergenic 15.0%
!!! TAAAAAATATGTTACTTTCA+AGG + chr5_3:27733413-27733432 None:intergenic 15.0%
!!! AAAATCAAAATCAAGAATTT+TGG - chr5_3:27733507-27733526 Msa0807000:CDS 15.0%
!!! GTTACTTGATAATTTTATTT+TGG - chr5_3:27733543-27733562 Msa0807000:CDS 15.0%
!! GGAAACAATAATAATATATA+TGG - chr5_3:27735014-27735033 Msa0807000:five_prime_UTR 15.0%
!!! TATTTTTTCAGATTAATGTT+TGG - chr5_3:27735039-27735058 Msa0807000:five_prime_UTR 15.0%
!! TTATAAACTTTGGATAAGTT+GGG + chr5_3:27730171-27730190 None:intergenic 20.0%
!! TTTATAAACTTTGGATAAGT+TGG + chr5_3:27730172-27730191 None:intergenic 20.0%
!! CTAATATAAAATACATGTAG+GGG + chr5_3:27730573-27730592 None:intergenic 20.0%
!!! GTTAGTTGTAATTTGTAAAT+TGG - chr5_3:27730933-27730952 Msa0807000:CDS 20.0%
!! AAACAAATCAACTTCATATT+AGG - chr5_3:27730979-27730998 Msa0807000:CDS 20.0%
!! TAAATTGAGAATAAAATCAG+GGG + chr5_3:27731082-27731101 None:intergenic 20.0%
!! GTAAATTGAGAATAAAATCA+GGG + chr5_3:27731083-27731102 None:intergenic 20.0%
!! TGTAAATTGAGAATAAAATC+AGG + chr5_3:27731084-27731103 None:intergenic 20.0%
!! TTATCCAAAAAACAAACTTA+AGG - chr5_3:27731360-27731379 Msa0807000:CDS 20.0%
!! TATCCAAAAAACAAACTTAA+GGG - chr5_3:27731361-27731380 Msa0807000:CDS 20.0%
!! TATACTTTGATTATATACGT+CGG + chr5_3:27732245-27732264 None:intergenic 20.0%
!! GGACTCAAAATAAAAATATA+TGG + chr5_3:27732386-27732405 None:intergenic 20.0%
!! AAAAACATAGAACAAAATAG+AGG + chr5_3:27732453-27732472 None:intergenic 20.0%
!! AAAAAATAGAATTTGTGAAG+TGG + chr5_3:27732636-27732655 None:intergenic 20.0%
!!! AGGTGTATCAATTTTATTTT+TGG - chr5_3:27732839-27732858 Msa0807000:intron 20.0%
!! TAGTAAGCAAATTGAATTAA+TGG - chr5_3:27733115-27733134 Msa0807000:intron 20.0%
!!! TTATTATCAATCAAAGTATC+TGG + chr5_3:27733482-27733501 None:intergenic 20.0%
!!! TGCAATTTTTGTTGTTATAT+TGG - chr5_3:27734386-27734405 Msa0807000:intron 20.0%
!!! AGTTTAATTTAAGCTATACA+TGG - chr5_3:27734919-27734938 Msa0807000:five_prime_UTR 20.0%
! ATACATGAAATTATGACGAT+CGG + chr5_3:27730388-27730407 None:intergenic 25.0%
! CGTCATAATTTCATGTATTA+TGG - chr5_3:27730390-27730409 Msa0807000:three_prime_UTR 25.0%
! AAAAACGTTATATTGTGTAG+AGG + chr5_3:27730506-27730525 None:intergenic 25.0%
! TTGCGTTGAAACAATAATTA+GGG + chr5_3:27730546-27730565 None:intergenic 25.0%
! TTGATTCATCTATATTGTTG+AGG - chr5_3:27730911-27730930 Msa0807000:CDS 25.0%
! ATCAACTTCATATTAGGAAT+TGG - chr5_3:27730985-27731004 Msa0807000:CDS 25.0%
!!! ATTATTTTATATGGGATGAG+TGG - chr5_3:27731145-27731164 Msa0807000:intron 25.0%
!!! TTATTTTGTACCGAGAAAAA+CGG - chr5_3:27731213-27731232 Msa0807000:intron 25.0%
!!! ATATATTGAACCGTTTTTCT+CGG + chr5_3:27731226-27731245 None:intergenic 25.0%
! AAAACGGTTCAATATATTGT+TGG - chr5_3:27731229-27731248 Msa0807000:intron 25.0%
! ATTAGTAGTTGAGAGATTTA+GGG + chr5_3:27731333-27731352 None:intergenic 25.0%
! AATTAGTAGTTGAGAGATTT+AGG + chr5_3:27731334-27731353 None:intergenic 25.0%
!!! ATACCCTTAAGTTTGTTTTT+TGG + chr5_3:27731367-27731386 None:intergenic 25.0%
! AAAACAAAGTGAATTTGGTT+TGG + chr5_3:27731430-27731449 None:intergenic 25.0%
!!! AAACCAAATTCACTTTGTTT+TGG - chr5_3:27731429-27731448 Msa0807000:CDS 25.0%
! TACTGCAAATATGATAATCA+AGG - chr5_3:27731678-27731697 Msa0807000:intron 25.0%
!!! CAAAAGTATTGGAGAAAAAT+GGG + chr5_3:27732415-27732434 None:intergenic 25.0%
! AAAATAGAGGTTTACATCAA+AGG + chr5_3:27732440-27732459 None:intergenic 25.0%
! AATTGAGTTCTCATTCTAAA+CGG + chr5_3:27732512-27732531 None:intergenic 25.0%
! GCAAAACTCATTTCAAAATT+TGG + chr5_3:27732547-27732566 None:intergenic 25.0%
!!! TTTTGAAATGAGTTTTGCAT+TGG - chr5_3:27732549-27732568 Msa0807000:intron 25.0%
!! TCTTAAAGTTGCTTTAAACA+AGG - chr5_3:27732579-27732598 Msa0807000:intron 25.0%
! GACATTAGTGTCTAATTATA+AGG - chr5_3:27732819-27732838 Msa0807000:intron 25.0%
!!! CTATATCTAACAATTTTGAC+CGG + chr5_3:27733154-27733173 None:intergenic 25.0%
!!! TCCATTTTTTTAGTCTACAA+GGG - chr5_3:27733303-27733322 Msa0807000:intron 25.0%
! TCATTTGTTTGTTCAAAAAC+AGG - chr5_3:27734086-27734105 Msa0807000:intron 25.0%
! AATTCCAAGAATTTACAACT+GGG + chr5_3:27734820-27734839 None:intergenic 25.0%
! AATACTCATTTGGTATTTAC+CGG + chr5_3:27734843-27734862 None:intergenic 25.0%
! TAGAGACTAAAATACTCATT+TGG + chr5_3:27734853-27734872 None:intergenic 25.0%
!!! CTATGCAAGTTATTTTGTTT+TGG - chr5_3:27734892-27734911 Msa0807000:CDS 25.0%
!! TTCCATACAAATTTTGTCTA+TGG - chr5_3:27734993-27735012 Msa0807000:five_prime_UTR 25.0%
! TTCCATAGACAAAATTTGTA+TGG + chr5_3:27734998-27735017 None:intergenic 25.0%
GAGGTGGTATTTATAAACTT+TGG + chr5_3:27730181-27730200 None:intergenic 30.0%
!!! CACAACCTCAATTACTTTTT+AGG - chr5_3:27730286-27730305 Msa0807000:three_prime_UTR 30.0%
GTTTGCCTAAAAAGTAATTG+AGG + chr5_3:27730294-27730313 None:intergenic 30.0%
GTTGCGTTGAAACAATAATT+AGG + chr5_3:27730547-27730566 None:intergenic 30.0%
TATAAAATACATGTAGGGGA+TGG + chr5_3:27730569-27730588 None:intergenic 30.0%
!!! GGTATCTTTTTCGATGATTT+TGG + chr5_3:27730632-27730651 None:intergenic 30.0%
TACAGCACATATTGAAAAGA+TGG + chr5_3:27730657-27730676 None:intergenic 30.0%
GGAATCATATCACAGAAATT+TGG - chr5_3:27730955-27730974 Msa0807000:CDS 30.0%
AATAAAATCAGGGGTGATTT+GGG + chr5_3:27731073-27731092 None:intergenic 30.0%
AAGCCAAAACAAAGTGAATT+TGG + chr5_3:27731435-27731454 None:intergenic 30.0%
GGAAAAACTTCTTCAGAAAT+GGG + chr5_3:27731611-27731630 None:intergenic 30.0%
!!! ATTGCTGGTTTTTTCTTCAT+TGG - chr5_3:27731801-27731820 Msa0807000:intron 30.0%
!! CCAAAAGTATTGGAGAAAAA+TGG + chr5_3:27732416-27732435 None:intergenic 30.0%
!! CCATTTTTCTCCAATACTTT+TGG - chr5_3:27732413-27732432 Msa0807000:intron 30.0%
TTTGCTAACCTTGTCAATTA+TGG - chr5_3:27732996-27733015 Msa0807000:intron 30.0%
ACACAGTTGAAGAAAAAAAG+AGG + chr5_3:27733056-27733075 None:intergenic 30.0%
TTGAATTAATGGTTAGTGTG+TGG - chr5_3:27733126-27733145 Msa0807000:intron 30.0%
!!! GTCCATTTTTTTAGTCTACA+AGG - chr5_3:27733302-27733321 Msa0807000:intron 30.0%
ACCCTTGTAGACTAAAAAAA+TGG + chr5_3:27733307-27733326 None:intergenic 30.0%
CTTCAACAAATATCTACAAG+AGG + chr5_3:27733442-27733461 None:intergenic 30.0%
! CTCTTGTAGATATTTGTTGA+AGG - chr5_3:27733440-27733459 Msa0807000:CDS 30.0%
! ATGTTATGCAACTTCAAGTT+TGG - chr5_3:27734567-27734586 Msa0807000:intron 30.0%
CATACCAATTGAAGAAATGA+CGG - chr5_3:27734665-27734684 Msa0807000:intron 30.0%
AGAATTTACAACTGGGAATT+CGG + chr5_3:27734813-27734832 None:intergenic 30.0%
AATTCCCAGTTGTAAATTCT+TGG - chr5_3:27734813-27734832 Msa0807000:CDS 30.0%
GAATTCCAAGAATTTACAAC+TGG + chr5_3:27734821-27734840 None:intergenic 30.0%
GTTGTAAATTCTTGGAATTC+CGG - chr5_3:27734821-27734840 Msa0807000:CDS 30.0%
! CTTTTCACAAAGAAGAAACA+GGG + chr5_3:27734969-27734988 None:intergenic 30.0%
! ACTTTTCACAAAGAAGAAAC+AGG + chr5_3:27734970-27734989 None:intergenic 30.0%
!! GAAAGTATAGAGAGTGTTTG+AGG + chr5_3:27730200-27730219 None:intergenic 35.0%
CTTATGTTCGGTTATGATGT+TGG - chr5_3:27730427-27730446 Msa0807000:CDS 35.0%
ACGTTATATTGTGTAGAGGA+AGG + chr5_3:27730502-27730521 None:intergenic 35.0%
GCACATATTGAAAAGATGGA+GGG + chr5_3:27730653-27730672 None:intergenic 35.0%
AGCACATATTGAAAAGATGG+AGG + chr5_3:27730654-27730673 None:intergenic 35.0%
GAATAAAATCAGGGGTGATT+TGG + chr5_3:27731074-27731093 None:intergenic 35.0%
! TGTTAATCCATGTGATGATG+TGG - chr5_3:27731176-27731195 Msa0807000:intron 35.0%
TCATTATCCACATCATCACA+TGG + chr5_3:27731186-27731205 None:intergenic 35.0%
ACGGTTCAATATATTGTTGG+TGG - chr5_3:27731232-27731251 Msa0807000:intron 35.0%
ATGAACCCCTAACATAACAT+GGG - chr5_3:27731280-27731299 Msa0807000:intron 35.0%
TGGATTCCCATGTTATGTTA+GGG + chr5_3:27731289-27731308 None:intergenic 35.0%
TTGGATTCCCATGTTATGTT+AGG + chr5_3:27731290-27731309 None:intergenic 35.0%
!! AAGTGAATTTGGTTTGGTGA+AGG + chr5_3:27731424-27731443 None:intergenic 35.0%
TATATATTGTGGTGACATGC+AGG - chr5_3:27731567-27731586 Msa0807000:intron 35.0%
GGGAAAAACTTCTTCAGAAA+TGG + chr5_3:27731612-27731631 None:intergenic 35.0%
ATACAGAAAGACAGTGTTAG+AGG - chr5_3:27731638-27731657 Msa0807000:intron 35.0%
AGTTAATGCAGCTAGGTATA+AGG + chr5_3:27731724-27731743 None:intergenic 35.0%
AAGTTGAAGTTAATGCAGCT+AGG + chr5_3:27731731-27731750 None:intergenic 35.0%
ATCCTATACAACTCGTACAT+TGG - chr5_3:27731758-27731777 Msa0807000:intron 35.0%
TCCTATACAACTCGTACATT+GGG - chr5_3:27731759-27731778 Msa0807000:intron 35.0%
GAAAAAACCAGCAATCAACA+TGG + chr5_3:27731796-27731815 None:intergenic 35.0%
ATTGTTGGCAGAATCTTACT+TGG - chr5_3:27731867-27731886 Msa0807000:intron 35.0%
CTTCATGAACATGCTAATGT+CGG - chr5_3:27732121-27732140 Msa0807000:intron 35.0%
TTGGAGAAAAATGGGTGATA+AGG + chr5_3:27732407-27732426 None:intergenic 35.0%
! CATCAAAGGACCAAAAGTAT+TGG + chr5_3:27732426-27732445 None:intergenic 35.0%
TTAAACAAGGAGTTCTGCAT+TGG - chr5_3:27732592-27732611 Msa0807000:intron 35.0%
!!! TTTTGTCATCACTTGTTGTG+TGG - chr5_3:27732666-27732685 Msa0807000:intron 35.0%
ACACATATAGTAACGTAACG+TGG - chr5_3:27732712-27732731 Msa0807000:intron 35.0%
CTATGTACGTACGTGTAATT+TGG + chr5_3:27732745-27732764 None:intergenic 35.0%
AATTACACGTACGTACATAG+TGG - chr5_3:27732745-27732764 Msa0807000:intron 35.0%
GTTAGCAAACAAAATCCCAA+TGG + chr5_3:27732985-27733004 None:intergenic 35.0%
TGTTAGTGCCATAATTGACA+AGG + chr5_3:27733007-27733026 None:intergenic 35.0%
CTAAAAGTCTAGCACATGTT+TGG - chr5_3:27733235-27733254 Msa0807000:intron 35.0%
ACAAATATCTACAAGAGGTG+TGG + chr5_3:27733437-27733456 None:intergenic 35.0%
TTGTGATCATGCAGAATTTC+AGG - chr5_3:27733652-27733671 Msa0807000:intron 35.0%
GCTGTACTTAAAAAGATTCG+TGG - chr5_3:27733802-27733821 Msa0807000:intron 35.0%
!! AAGAGGTAAAGCATCCTTTT+AGG - chr5_3:27733881-27733900 Msa0807000:intron 35.0%
CGTTTGAGAAGATTCCTAAA+AGG + chr5_3:27733898-27733917 None:intergenic 35.0%
TACTTGTAATGCGATGGAAA+TGG + chr5_3:27733941-27733960 None:intergenic 35.0%
AGTACTTACTTGTAATGCGA+TGG + chr5_3:27733947-27733966 None:intergenic 35.0%
AGTAATCACAGCTGAATAGA+GGG + chr5_3:27734196-27734215 None:intergenic 35.0%
TGAGTAGATAGACACAATTG+TGG + chr5_3:27734238-27734257 None:intergenic 35.0%
ATCTACTCAGTCGATAAACT+TGG - chr5_3:27734249-27734268 Msa0807000:intron 35.0%
AGACAAGAACATTTGTACAC+CGG + chr5_3:27734298-27734317 None:intergenic 35.0%
TCGTGATAGCAATCATTCTT+GGG - chr5_3:27734322-27734341 Msa0807000:intron 35.0%
!! ATAGCCTTTTGAAAGATCGT+CGG + chr5_3:27734367-27734386 None:intergenic 35.0%
! GTCAATCTTTGTGCTTTTCT+TGG - chr5_3:27734626-27734645 Msa0807000:intron 35.0%
!! AGTATAGAGAGTGTTTGAGG+TGG + chr5_3:27730197-27730216 None:intergenic 40.0%
GTGAGAAGAGAAGAGTTGTT+GGG + chr5_3:27730236-27730255 None:intergenic 40.0%
AGTGAGAAGAGAAGAGTTGT+TGG + chr5_3:27730237-27730256 None:intergenic 40.0%
GGTTGTGAATCAATGCAATG+AGG + chr5_3:27730273-27730292 None:intergenic 40.0%
CAAACCTAGCTAACAAACCA+TGG - chr5_3:27730309-27730328 Msa0807000:three_prime_UTR 40.0%
TCATGTATTATGGCTGCTAC+CGG - chr5_3:27730400-27730419 Msa0807000:exon 40.0%
ATAACCGAACATAAGACCAC+CGG + chr5_3:27730422-27730441 None:intergenic 40.0%
! GGTTATGATGTTGGTGTTTC+AGG - chr5_3:27730436-27730455 Msa0807000:CDS 40.0%
CATGAACCCCTAACATAACA+TGG - chr5_3:27731279-27731298 Msa0807000:intron 40.0%
GGATTCCCATGTTATGTTAG+GGG + chr5_3:27731288-27731307 None:intergenic 40.0%
AGTTGAGAGATTTAGGGAAG+TGG + chr5_3:27731327-27731346 None:intergenic 40.0%
!! TGAATTTGGTTTGGTGAAGG+TGG + chr5_3:27731421-27731440 None:intergenic 40.0%
CTGTCTTTCTGTATACTGCT+GGG + chr5_3:27731632-27731651 None:intergenic 40.0%
ACTGTCTTTCTGTATACTGC+TGG + chr5_3:27731633-27731652 None:intergenic 40.0%
CCTATACAACTCGTACATTG+GGG - chr5_3:27731760-27731779 Msa0807000:intron 40.0%
!!! GCTGGTTTTTTCTTCATTGG+TGG - chr5_3:27731804-27731823 Msa0807000:intron 40.0%
ATCTTACTTGGTTGTGGTGT+TGG - chr5_3:27731879-27731898 Msa0807000:intron 40.0%
!!! TGGTGTTGGTTTTGCTAATC+AGG - chr5_3:27731893-27731912 Msa0807000:intron 40.0%
CACAGTTGCTCTTAGTCATT+AGG - chr5_3:27732021-27732040 Msa0807000:intron 40.0%
TTTGATATAGACGCACGCAA+TGG + chr5_3:27732204-27732223 None:intergenic 40.0%
! GCAATTTCTGAGAGGAAAAC+TGG + chr5_3:27732912-27732931 None:intergenic 40.0%
! TTGAAGGTGCAATTTCTGAG+AGG + chr5_3:27732920-27732939 None:intergenic 40.0%
ATTGCACCTTCAAGAATTCG+TGG - chr5_3:27732927-27732946 Msa0807000:intron 40.0%
AAAGCTCCACGAATTCTTGA+AGG + chr5_3:27732936-27732955 None:intergenic 40.0%
TACACTTGCCATGTTGTTAG+CGG + chr5_3:27733279-27733298 None:intergenic 40.0%
TAGTCTACAAGGGTCAACTT+TGG - chr5_3:27733313-27733332 Msa0807000:intron 40.0%
GTAGACACTTCATACAAACG+TGG - chr5_3:27733347-27733366 Msa0807000:CDS 40.0%
! TCAATCAAAGTATCTGGCAC+TGG + chr5_3:27733476-27733495 None:intergenic 40.0%
TGATCATGCAGAATTTCAGG+TGG - chr5_3:27733655-27733674 Msa0807000:intron 40.0%
! ATGCAGAATTTCAGGTGGAT+GGG - chr5_3:27733660-27733679 Msa0807000:intron 40.0%
TTGGAGACTATCTCTTGGTT+TGG - chr5_3:27733684-27733703 Msa0807000:intron 40.0%
! TGGAAATGGTAAGTTGAGGT+CGG + chr5_3:27733927-27733946 None:intergenic 40.0%
CAGGTATTCCAACAATTCAC+CGG - chr5_3:27734105-27734124 Msa0807000:intron 40.0%
! ACCAGTGTTGTTCAATACAG+TGG - chr5_3:27734152-27734171 Msa0807000:intron 40.0%
! CCAGTGTTGTTCAATACAGT+GGG - chr5_3:27734153-27734172 Msa0807000:intron 40.0%
CAGTAATCACAGCTGAATAG+AGG + chr5_3:27734197-27734216 None:intergenic 40.0%
CTCTATTCAGCTGTGATTAC+TGG - chr5_3:27734195-27734214 Msa0807000:intron 40.0%
AGATAGACACAATTGTGGAG+AGG + chr5_3:27734233-27734252 None:intergenic 40.0%
GTCGTGATAGCAATCATTCT+TGG - chr5_3:27734321-27734340 Msa0807000:intron 40.0%
AGCAATCATTCTTGGGATCA+AGG - chr5_3:27734329-27734348 Msa0807000:intron 40.0%
TGAAAGATCGTCGGAATGAT+CGG + chr5_3:27734358-27734377 None:intergenic 40.0%
CATTCCGACGATCTTTCAAA+AGG - chr5_3:27734360-27734379 Msa0807000:intron 40.0%
AAAAGCCTGAGCAATGACAA+AGG + chr5_3:27734541-27734560 None:intergenic 40.0%
GGAATCTTCTTGTTCTTCTC+TGG - chr5_3:27734588-27734607 Msa0807000:intron 40.0%
ATTGGTATGTTCTTCGTCTC+AGG + chr5_3:27734654-27734673 None:intergenic 40.0%
CTCTCCGTCATTTCTTCAAT+TGG + chr5_3:27734672-27734691 None:intergenic 40.0%
! AAGAAATGACGGAGAGAGTA+TGG - chr5_3:27734676-27734695 Msa0807000:intron 40.0%
! AGAGAGTATGGAAGCAACAT+TGG - chr5_3:27734688-27734707 Msa0807000:intron 40.0%
!! TATGGAAGCAACATTGGTTC+TGG - chr5_3:27734694-27734713 Msa0807000:intron 40.0%
!! TTGGTTCTGGAAGAGGTTTA+TGG - chr5_3:27734707-27734726 Msa0807000:intron 40.0%
ACAAAGAAGAAACAGGGAAG+AGG + chr5_3:27734963-27734982 None:intergenic 40.0%
AGTGGCTCACATGCAAAGAT+TGG + chr5_3:27731309-27731328 None:intergenic 45.0%
!! TTTGGTTTGGTGAAGGTGGT+GGG + chr5_3:27731417-27731436 None:intergenic 45.0%
!! ATTTGGTTTGGTGAAGGTGG+TGG + chr5_3:27731418-27731437 None:intergenic 45.0%
ATATTGTGGTGACATGCAGG+TGG - chr5_3:27731570-27731589 Msa0807000:intron 45.0%
AGAAAGACAGTGTTAGAGGC+AGG - chr5_3:27731642-27731661 Msa0807000:intron 45.0%
CCCCAATGTACGAGTTGTAT+AGG + chr5_3:27731763-27731782 None:intergenic 45.0%
! AGACTCACCATGTTGATTGC+TGG - chr5_3:27731786-27731805 Msa0807000:intron 45.0%
AACCTTGCCATGCTCATTGT+TGG - chr5_3:27731852-27731871 Msa0807000:intron 45.0%
GATTCTGCCAACAATGAGCA+TGG + chr5_3:27731862-27731881 None:intergenic 45.0%
GGCAGAATCTTACTTGGTTG+TGG - chr5_3:27731873-27731892 Msa0807000:intron 45.0%
TTCCAGCTCAATGTCACCAT+TGG - chr5_3:27732966-27732985 Msa0807000:intron 45.0%
TCCAGCTCAATGTCACCATT+GGG - chr5_3:27732967-27732986 Msa0807000:intron 45.0%
TAATGGTTAGTGTGTGGTGC+CGG - chr5_3:27733132-27733151 Msa0807000:intron 45.0%
TGTGTTCTCCGCTAACAACA+TGG - chr5_3:27733268-27733287 Msa0807000:intron 45.0%
TCTACAAGGGTCAACTTTGG+TGG - chr5_3:27733316-27733335 Msa0807000:intron 45.0%
! TATCTGGCACTGGACTATGT+GGG + chr5_3:27733466-27733485 None:intergenic 45.0%
! CATGCAGAATTTCAGGTGGA+TGG - chr5_3:27733659-27733678 Msa0807000:intron 45.0%
! TGCAGAATTTCAGGTGGATG+GGG - chr5_3:27733661-27733680 Msa0807000:intron 45.0%
!! AGACTATCTCTTGGTTTGGC+TGG - chr5_3:27733688-27733707 Msa0807000:intron 45.0%
CAACATTGAACCCGAGTTCT+TGG - chr5_3:27733831-27733850 Msa0807000:intron 45.0%
TCACAAAGCTCCAAGAACTC+GGG + chr5_3:27733844-27733863 None:intergenic 45.0%
CTCACAAAGCTCCAAGAACT+CGG + chr5_3:27733845-27733864 None:intergenic 45.0%
GCGATGGAAATGGTAAGTTG+AGG + chr5_3:27733931-27733950 None:intergenic 45.0%
! AAACATGATCGCGTTGATGC+CGG + chr5_3:27734127-27734146 None:intergenic 45.0%
CCCACTGTATTGAACAACAC+TGG + chr5_3:27734156-27734175 None:intergenic 45.0%
TCGAGTGGAAATGTCTCACT+TGG + chr5_3:27734468-27734487 None:intergenic 45.0%
GTTCACCTTTGTCATTGCTC+AGG - chr5_3:27734533-27734552 Msa0807000:intron 45.0%
TCTTCTTGTTCTTCTCTGGC+TGG - chr5_3:27734592-27734611 Msa0807000:intron 45.0%
CTTCTTGTTCTTCTCTGGCT+GGG - chr5_3:27734593-27734612 Msa0807000:intron 45.0%
!! AGCAACATTGGTTCTGGAAG+AGG - chr5_3:27734700-27734719 Msa0807000:intron 45.0%
!!! AAAAAAAACATTATTTTATA+TGG - chr5_3:27731136-27731155 Msa0807000:intron 5.0%
!!! AAAAAAACATTATTTTATAT+GGG - chr5_3:27731137-27731156 Msa0807000:intron 5.0%
!!! TGATTATAATTAATTTATTT+TGG - chr5_3:27731499-27731518 Msa0807000:CDS 5.0%
!! ATTAATATATATATATATTG+TGG - chr5_3:27731556-27731575 Msa0807000:CDS 5.0%
CCTAGCTAACAAACCATGGC+CGG - chr5_3:27730313-27730332 Msa0807000:three_prime_UTR 50.0%
TGTATTATGGCTGCTACCGG+TGG - chr5_3:27730403-27730422 Msa0807000:exon 50.0%
!! GCTACCGGTGGTCTTATGTT+CGG - chr5_3:27730415-27730434 Msa0807000:exon 50.0%
TGCCAACAATGAGCATGGCA+AGG + chr5_3:27731857-27731876 None:intergenic 50.0%
TCCCAATGGTGACATTGAGC+TGG + chr5_3:27732971-27732990 None:intergenic 50.0%
! GTATCTGGCACTGGACTATG+TGG + chr5_3:27733467-27733486 None:intergenic 50.0%
! GAATTTCAGGTGGATGGGGT+TGG - chr5_3:27733665-27733684 Msa0807000:intron 50.0%
TGGGGTTGGAGACTATCTCT+TGG - chr5_3:27733679-27733698 Msa0807000:intron 50.0%
!! CCACTGTTAGGAGAAGTGCT+GGG + chr5_3:27733717-27733736 None:intergenic 50.0%
CCAGCACTTCTCCTAACAGT+GGG - chr5_3:27733715-27733734 Msa0807000:intron 50.0%
TCGCTCAATGAGACTGTTGG+GGG + chr5_3:27733761-27733780 None:intergenic 50.0%
CTCGCTCAATGAGACTGTTG+GGG + chr5_3:27733762-27733781 None:intergenic 50.0%
CCTCGCTCAATGAGACTGTT+GGG + chr5_3:27733763-27733782 None:intergenic 50.0%
ACCTCGCTCAATGAGACTGT+TGG + chr5_3:27733764-27733783 None:intergenic 50.0%
! CGAGTTCTTGGAGCTTTGTG+AGG - chr5_3:27733843-27733862 Msa0807000:intron 50.0%
! TGGAGCTTTGTGAGGCAAGT+CGG - chr5_3:27733851-27733870 Msa0807000:intron 50.0%
CGTTGATGCCGGTGAATTGT+TGG + chr5_3:27734116-27734135 None:intergenic 50.0%
TGGTCGTCGTATGTTGCTGT+TGG - chr5_3:27734269-27734288 Msa0807000:intron 50.0%
! CGTATGTTGCTGTTGGAAGC+CGG - chr5_3:27734276-27734295 Msa0807000:intron 50.0%
CTTGGAATAAGCCAACCGAG+AGG + chr5_3:27734450-27734469 None:intergenic 50.0%
!! CCGGCCATGGTTTGTTAGCT+AGG + chr5_3:27730316-27730335 None:intergenic 55.0%
AGCTAACAAACCATGGCCGG+CGG - chr5_3:27730316-27730335 Msa0807000:three_prime_UTR 55.0%
!! GAAGGTGGTGGGAGACTTCA+TGG + chr5_3:27731406-27731425 None:intergenic 55.0%
CCCAGCACTTCTCCTAACAG+TGG - chr5_3:27733714-27733733 Msa0807000:intron 55.0%
! CCCACTGTTAGGAGAAGTGC+TGG + chr5_3:27733718-27733737 None:intergenic 55.0%
CCATGAGTGCACCCACTGTT+AGG + chr5_3:27733729-27733748 None:intergenic 55.0%
CCTAACAGTGGGTGCACTCA+TGG - chr5_3:27733726-27733745 Msa0807000:intron 55.0%
AGTGGGTGCACTCATGGTTG+TGG - chr5_3:27733732-27733751 Msa0807000:intron 55.0%
CCCAACAGTCTCATTGAGCG+AGG - chr5_3:27733760-27733779 Msa0807000:intron 55.0%
GAGCGAGGTCGCATTGAAGA+AGG - chr5_3:27733775-27733794 Msa0807000:intron 55.0%
! GGAGCTTTGTGAGGCAAGTC+GGG - chr5_3:27733852-27733871 Msa0807000:intron 55.0%
! GGCAAGTCGGGTTGCTAAAG+AGG - chr5_3:27733864-27733883 Msa0807000:intron 55.0%
CTTTCGTGTCTGCCTTCGCT+TGG - chr5_3:27734415-27734434 Msa0807000:intron 55.0%
TGTCTGCCTTCGCTTGGTCT+TGG - chr5_3:27734421-27734440 Msa0807000:intron 55.0%
! GTCTGCCTTCGCTTGGTCTT+GGG - chr5_3:27734422-27734441 Msa0807000:intron 55.0%
!! TCTGCCTTCGCTTGGTCTTG+GGG - chr5_3:27734423-27734442 Msa0807000:intron 55.0%
TAACAAACCATGGCCGGCGG+AGG - chr5_3:27730319-27730338 Msa0807000:three_prime_UTR 60.0%
AAAATCACCCCCGCCACTCG+TGG + chr5_3:27730350-27730369 None:intergenic 60.0%
!! GAGTGGCGGGGGTGATTTTG+AGG - chr5_3:27730351-27730370 Msa0807000:three_prime_UTR 60.0%
AGGACCCCAAGACCAAGCGA+AGG + chr5_3:27734430-27734449 None:intergenic 60.0%
!! GCTTGGTCTTGGGGTCCTCT+CGG - chr5_3:27734432-27734451 Msa0807000:intron 60.0%
CCAGCTGATCGAGTCTCGAG+TGG + chr5_3:27734483-27734502 None:intergenic 60.0%
CCACTCGAGACTCGATCAGC+TGG - chr5_3:27734480-27734499 Msa0807000:intron 60.0%
GGTCTTGGGGTCCTCTCGGT+TGG - chr5_3:27734436-27734455 Msa0807000:intron 65.0%
ACTCGTGGCGAAGCCTCCGC+CGG + chr5_3:27730335-27730354 None:intergenic 70.0%
GGAGGCTTCGCCACGAGTGG+CGG - chr5_3:27730337-27730356 Msa0807000:three_prime_UTR 70.0%
GAGGCTTCGCCACGAGTGGC+GGG - chr5_3:27730338-27730357 Msa0807000:three_prime_UTR 70.0%
AGGCTTCGCCACGAGTGGCG+GGG - chr5_3:27730339-27730358 Msa0807000:three_prime_UTR 70.0%
GGCGGAGGCTTCGCCACGAG+TGG - chr5_3:27730334-27730353 Msa0807000:three_prime_UTR 75.0%
GGCTTCGCCACGAGTGGCGG+GGG - chr5_3:27730340-27730359 Msa0807000:three_prime_UTR 75.0%
! GGCGAAGCCTCCGCCGGCCA+TGG + chr5_3:27730329-27730348 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 27730168 27735076 27730168 ID=Msa0807000;Name=Msa0807000
chr5_3 mRNA 27730168 27735076 27730168 ID=Msa0807000-mRNA-1;Parent=Msa0807000;Name=Msa0807000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=160|1|1|1|1|1|5|249|530
chr5_3 exon 27730168 27731136 27730168 ID=Msa0807000-mRNA-1:exon:9826;Parent=Msa0807000-mRNA-1
chr5_3 exon 27731287 27731578 27731287 ID=Msa0807000-mRNA-1:exon:9825;Parent=Msa0807000-mRNA-1
chr5_3 exon 27732217 27732341 27732217 ID=Msa0807000-mRNA-1:exon:9824;Parent=Msa0807000-mRNA-1
chr5_3 exon 27733330 27733655 27733330 ID=Msa0807000-mRNA-1:exon:9823;Parent=Msa0807000-mRNA-1
chr5_3 exon 27734787 27735076 27734787 ID=Msa0807000-mRNA-1:exon:9822;Parent=Msa0807000-mRNA-1
chr5_3 five_prime_UTR 27734917 27735076 27734917 ID=Msa0807000-mRNA-1:five_prime_utr;Parent=Msa0807000-mRNA-1
chr5_3 CDS 27734787 27734916 27734787 ID=Msa0807000-mRNA-1:cds;Parent=Msa0807000-mRNA-1
chr5_3 CDS 27733330 27733655 27733330 ID=Msa0807000-mRNA-1:cds;Parent=Msa0807000-mRNA-1
chr5_3 CDS 27732217 27732341 27732217 ID=Msa0807000-mRNA-1:cds;Parent=Msa0807000-mRNA-1
chr5_3 CDS 27731287 27731578 27731287 ID=Msa0807000-mRNA-1:cds;Parent=Msa0807000-mRNA-1
chr5_3 CDS 27730417 27731136 27730417 ID=Msa0807000-mRNA-1:cds;Parent=Msa0807000-mRNA-1
chr5_3 three_prime_UTR 27730168 27730416 27730168 ID=Msa0807000-mRNA-1:three_prime_utr;Parent=Msa0807000-mRNA-1
Gene Sequence

>Msa0807000

ATGGCCGGCGGAGGCTTCGCCACGAGTGGCGGGGGTGATTTTGAGGCAAAGATTACTCCGATCGTCATAATTTCATGTATTATGGCTGCTACCGGTGGTCTTATGTTCGGTTATGATGTTGGTGTTTCAGGTGGTGTGACATCTATGCACCCATTTCTGAAGAAGTTTTTCCCAGCAGTATACAGAAAGACAGTGTTAGAGGCAGGATTAGATAGTAATTACTGCAAATATGATAATCAAGGATTGCAGTTATTTACATCATCCTTATACCTAGCTGCATTAACTTCAACTTTCTTTGCATCCTATACAACTCGTACATTGGGGAGAAGACTCACCATGTTGATTGCTGGTTTTTTCTTCATTGGTGGAGTTGCTTTCAATGCTGCTGCTCAAAACCTTGCCATGCTCATTGTTGGCAGAATCTTACTTGGTTGTGGTGTTGGTTTTGCTAATCAGGCTGTGCCAGTTTTCCTCTCAGAAATTGCACCTTCAAGAATTCGTGGAGCTTTGAATATACTATTCCAGCTCAATGTCACCATTGGGATTTTGTTTGCTAACCTTGTCAATTATGGCACTAACAAAATTTCAGGTGGATGGGGTTGGAGACTATCTCTTGGTTTGGCTGGTATCCCAGCACTTCTCCTAACAGTGGGTGCACTCATGGTTGTGGACACCCCCAACAGTCTCATTGAGCGAGGTCGCATTGAAGAAGGAAAAGCTGTACTTAAAAAGATTCGTGGCACTGACAACATTGAACCCGAGTTCTTGGAGCTTTGTGAGGCAAGTCGGGTTGCTAAAGAGGTAAAGCATCCTTTTAGGAATCTTCTCAAACGCAAGAACCGACCTCAACTTACCATTTCCATCGCATTACAAGTATTCCAACAATTCACCGGCATCAACGCGATCATGTTTTATGCACCAGTGTTGTTCAATACAGTGGGATTCAAGAATGACGCTTCCCTCTATTCAGCTGTGATTACTGGTGCAGTTAATGTCCTCTCCACAATTGTGTCTATCTACTCAGTCGATAAACTTGGTCGTCGTATGTTGCTGTTGGAAGCCGGTGTACAAATGTTCTTGTCTCAAGTCGTGATAGCAATCATTCTTGGGATCAAGGTGACCGATCATTCCGACGATCTTTCAAAAGGCTATGCAATTTTTGTTGTTATATTGGTATGCACTTTCGTGTCTGCCTTCGCTTGGTCTTGGGGTCCTCTCGGTTGGCTTATTCCAAGTGAGACATTTCCACTCGAGACTCGATCAGCTGGACAAAGTGTCACAGTTTGTGTCAACATGTTGTTCACCTTTGTCATTGCTCAGGCTTTTCTCTCTATGTTATGCAACTTCAAGTTTGGAATCTTCTTGTTCTTCTCTGGCTGGGTTTTGATCATGTCAATCTTTGTGCTTTTCTTGGTGCCTGAGACGAAGAACATACCAATTGAAGAAATGACGGAGAGAGTATGGAAGCAACATTGGTTCTGGAAGAGGTTTATGGAAGATGATTATGACAATGAGAAAGTAGCTAATGCTGATTATCCTAAGATCAAAAATAATAATAATAATAATGGATATGATCCGAATTCCCAGTTGTAA
Protein sequence

>Msa0807000

MAGGGFATSGGGDFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMHPFLKKFFPAVYRKTVLEAGLDSNYCKYDNQGLQLFTSSLYLAALTSTFFASYTTRTLGRRLTMLIAGFFFIGGVAFNAAAQNLAMLIVGRILLGCGVGFANQAVPVFLSEIAPSRIRGALNILFQLNVTIGILFANLVNYGTNKISGGWGWRLSLGLAGIPALLLTVGALMVVDTPNSLIERGRIEEGKAVLKKIRGTDNIEPEFLELCEASRVAKEVKHPFRNLLKRKNRPQLTISIALQVFQQFTGINAIMFYAPVLFNTVGFKNDASLYSAVITGAVNVLSTIVSIYSVDKLGRRMLLLEAGVQMFLSQVVIAIILGIKVTDHSDDLSKGYAIFVVILVCTFVSAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNMLFTFVIAQAFLSMLCNFKFGIFLFFSGWVLIMSIFVLFLVPETKNIPIEEMTERVWKQHWFWKRFMEDDYDNEKVANADYPKIKNNNNNNGYDPNSQL*