AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0831680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831680 MtrunA17_Chr5g0394341 96.038 530 12 2 1 530 1 521 0.0 1026
Msa0831680 MtrunA17_Chr1g0205691 82.879 514 87 1 1 513 1 514 0.0 838
Msa0831680 MtrunA17_Chr1g0205671 72.655 501 133 3 1 499 1 499 0.0 750
Msa0831680 MtrunA17_Chr1g0205681 73.054 501 132 2 1 499 1 500 0.0 749
Msa0831680 MtrunA17_Chr5g0445601 59.091 506 197 5 1 501 1 501 0.0 610
Msa0831680 MtrunA17_Chr4g0065311 57.085 494 207 4 5 498 4 492 0.0 602
Msa0831680 MtrunA17_Chr3g0078971 56.313 499 214 4 9 506 10 505 0.0 597
Msa0831680 MtrunA17_Chr7g0257631 58.135 504 199 6 1 498 35 532 0.0 595
Msa0831680 MtrunA17_Chr5g0437021 56.556 511 215 4 2 508 3 510 0.0 589
Msa0831680 MtrunA17_Chr4g0065324 54.800 500 220 5 3 501 9 503 0.0 576
Msa0831680 MtrunA17_Chr1g0164871 56.226 514 214 6 1 507 1 510 0.0 574
Msa0831680 MtrunA17_Chr1g0164851 56.461 503 214 4 1 501 1 500 0.0 573
Msa0831680 MtrunA17_Chr4g0048411 60.198 505 196 4 13 514 14 516 0.0 573
Msa0831680 MtrunA17_Chr8g0390261 55.000 500 218 6 14 512 18 511 0.0 561
Msa0831680 MtrunA17_Chr6g0486681 56.324 506 212 6 1 501 1 502 0.0 561
Msa0831680 MtrunA17_Chr6g0486671 56.324 506 212 6 1 501 1 502 0.0 561
Msa0831680 MtrunA17_Chr3g0078991 53.862 492 222 5 16 505 17 505 0.0 550
Msa0831680 MtrunA17_Chr5g0417611 54.781 502 223 3 1 499 1 501 0.0 548
Msa0831680 MtrunA17_Chr3g0128081 54.134 508 228 3 1 504 1 507 0.0 544
Msa0831680 MtrunA17_Chr5g0420841 52.778 504 235 2 10 511 9 511 0.0 544
Msa0831680 MtrunA17_Chr8g0390141 53.036 494 227 5 14 506 18 507 0.0 542
Msa0831680 MtrunA17_Chr4g0048051 56.349 504 215 4 1 501 1 502 0.0 534
Msa0831680 MtrunA17_Chr3g0085971 52.314 497 234 2 13 507 12 507 0.0 526
Msa0831680 MtrunA17_Chr3g0115741 48.738 515 248 9 1 505 1 509 0.0 518
Msa0831680 MtrunA17_Chr3g0115781 49.023 512 247 9 1 505 1 505 1.02e-178 513
Msa0831680 MtrunA17_Chr3g0115721 48.828 512 251 8 1 507 1 506 5.32e-178 511
Msa0831680 MtrunA17_Chr3g0115751 49.385 488 239 6 17 501 23 505 1.85e-176 507
Msa0831680 MtrunA17_Chr3g0115711 48.008 502 253 6 1 499 1 497 3.00e-176 506
Msa0831680 MtrunA17_Chr3g0128171 53.982 452 204 3 49 497 1 451 6.97e-166 478
Msa0831680 MtrunA17_Chr3g0078791 50.459 436 193 3 71 504 16 430 4.14e-153 444
Msa0831680 MtrunA17_Chr3g0115731 44.294 517 242 12 1 505 1 483 7.69e-152 443
Msa0831680 MtrunA17_Chr4g0065351 56.977 344 145 3 161 504 1 341 1.96e-145 422
Msa0831680 MtrunA17_Chr6g0485661 30.022 463 285 10 27 476 63 499 1.93e-58 202
Msa0831680 MtrunA17_Chr4g0034681 28.762 525 318 11 13 509 17 513 3.73e-58 201
Msa0831680 MtrunA17_Chr1g0213611 29.652 489 315 8 20 499 76 544 6.53e-58 201
Msa0831680 MtrunA17_Chr3g0115771 34.713 314 157 7 151 461 5 273 1.23e-56 190
Msa0831680 MtrunA17_Chr7g0214451 30.435 483 294 13 20 491 31 482 2.22e-56 196
Msa0831680 MtrunA17_Chr4g0036021 28.846 520 315 12 26 524 31 516 3.56e-56 196
Msa0831680 MtrunA17_Chr3g0144361 29.000 500 299 11 13 483 15 487 1.05e-55 195
Msa0831680 MtrunA17_Chr1g0213631 31.144 411 268 9 108 511 53 455 5.02e-53 186
Msa0831680 MtrunA17_Chr8g0390521 27.235 481 310 8 17 483 13 467 7.60e-51 181
Msa0831680 MtrunA17_Chr2g0303731 33.693 371 216 9 20 382 24 372 8.95e-51 182
Msa0831680 MtrunA17_Chr5g0432581 27.977 529 318 13 12 513 6 498 1.82e-50 180
Msa0831680 MtrunA17_Chr8g0373531 29.522 481 289 11 27 483 24 478 2.99e-49 177
Msa0831680 MtrunA17_Chr4g0021771 26.327 490 318 12 23 499 55 514 3.12e-49 177
Msa0831680 MtrunA17_Chr8g0376631 34.118 340 197 7 20 352 24 343 4.91e-48 175
Msa0831680 MtrunA17_Chr4g0032021 29.363 487 299 12 22 489 96 556 4.07e-47 172
Msa0831680 MtrunA17_Chr2g0303701 33.333 354 208 7 20 367 24 355 5.77e-47 172
Msa0831680 MtrunA17_Chr8g0376601 32.659 346 202 8 16 352 20 343 1.94e-46 171
Msa0831680 MtrunA17_Chr2g0282031 26.327 471 310 10 23 483 53 496 3.41e-46 169
Msa0831680 MtrunA17_Chr4g0039651 28.099 484 298 11 23 486 46 499 6.59e-46 168
Msa0831680 MtrunA17_Chr6g0457781 27.824 478 306 11 12 486 99 540 4.81e-45 166
Msa0831680 MtrunA17_Chr4g0065341 51.429 140 66 1 13 152 18 155 7.96e-44 153
Msa0831680 MtrunA17_Chr2g0290181 29.500 400 240 8 1 382 1 376 1.97e-43 162
Msa0831680 MtrunA17_Chr8g0376611 37.402 254 146 5 108 352 27 276 4.62e-43 160
Msa0831680 MtrunA17_Chr8g0373181 29.710 414 279 5 73 483 77 481 7.30e-43 159
Msa0831680 MtrunA17_Chr7g0250881 27.883 477 307 11 12 486 59 500 9.90e-43 159
Msa0831680 MtrunA17_Chr7g0273281 27.861 402 275 5 84 483 103 491 1.83e-42 158
Msa0831680 MtrunA17_Chr1g0155221 29.325 474 296 11 19 485 45 486 1.81e-39 150
Msa0831680 MtrunA17_Chr5g0403831 27.972 429 287 7 76 483 64 491 2.11e-38 147
Msa0831680 MtrunA17_Chr5g0446681 43.005 193 73 2 1 193 1 156 2.95e-38 142
Msa0831680 MtrunA17_Chr5g0446681 49.669 151 71 2 358 504 136 285 1.19e-36 137
Msa0831680 MtrunA17_Chr8g0373191 30.423 355 231 7 134 483 110 453 1.55e-36 141
Msa0831680 MtrunA17_Chr4g0066581 28.571 406 270 7 83 483 92 482 1.20e-35 139
Msa0831680 MtrunA17_Chr7g0259471 25.799 407 287 5 83 487 80 473 1.47e-35 139
Msa0831680 MtrunA17_Chr4g0004821 25.277 451 316 8 46 491 42 476 2.12e-35 138
Msa0831680 MtrunA17_Chr6g0486021 26.972 393 273 6 93 483 102 482 7.98e-35 137
Msa0831680 MtrunA17_Chr2g0286721 28.010 407 271 10 83 483 89 479 1.96e-34 135
Msa0831680 MtrunA17_Chr3g0119401 27.532 385 261 9 107 486 159 530 6.26e-34 135
Msa0831680 MtrunA17_Chr3g0121674 28.571 308 206 6 205 507 2 300 4.20e-33 128
Msa0831680 MtrunA17_Chr2g0290161 30.068 296 162 7 99 381 19 282 2.14e-32 130
Msa0831680 MtrunA17_Chr7g0259221 25.307 407 289 5 83 487 82 475 8.55e-32 128
Msa0831680 MtrunA17_Chr7g0228781 39.429 175 71 3 13 152 29 203 1.06e-29 115
Msa0831680 MtrunA17_Chr3g0115761 46.218 119 60 2 49 166 1 116 1.59e-24 98.6
Msa0831680 MtrunA17_Chr5g0434231 32.022 178 95 2 81 258 3 154 1.29e-21 91.7
Msa0831680 MtrunA17_Chr7g0273261 26.182 275 169 5 257 530 17 258 1.31e-19 88.6
Msa0831680 MtrunA17_Chr3g0144261 35.443 158 96 3 107 261 68 222 1.04e-18 89.7
Msa0831680 MtrunA17_Chr3g0144261 26.693 251 154 8 257 485 473 715 1.73e-12 70.1
Msa0831680 MtrunA17_Chr3g0146061 32.903 155 102 2 108 261 71 224 1.49e-17 86.3
Msa0831680 MtrunA17_Chr3g0146061 25.397 252 156 9 257 485 483 725 1.81e-11 67.0
Msa0831680 MtrunA17_Chr5g0419321 29.444 180 121 3 84 260 75 251 1.80e-16 82.8
Msa0831680 MtrunA17_Chr5g0404191 30.808 198 128 3 84 279 91 281 5.88e-16 78.6
Msa0831680 MtrunA17_Chr8g0370141 26.446 242 154 7 84 304 47 285 1.71e-15 78.6
Msa0831680 MtrunA17_Chr5g0407441 26.337 243 152 7 22 260 4 223 2.47e-15 79.3
Msa0831680 MtrunA17_Chr6g0450271 34.959 123 69 4 239 352 32 152 2.90e-13 69.7
Msa0831680 MtrunA17_Chr8g0370151 28.947 228 145 5 269 485 125 346 4.17e-13 70.9
Msa0831680 MtrunA17_Chr5g0434241 36.364 99 58 3 256 352 1 96 7.56e-12 62.4
Msa0831680 MtrunA17_Chr7g0273271 27.014 211 126 4 19 229 24 206 1.38e-11 64.3
Msa0831680 MtrunA17_Chr6g0450291 36.364 99 58 3 256 352 1 96 6.89e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0831680 AT5G26340.1 81.733 531 91 3 1 530 1 526 0.0 894
Msa0831680 AT4G02050.2 58.627 510 201 5 1 505 1 505 0.0 622
Msa0831680 AT4G02050.1 58.627 510 201 5 1 505 1 505 0.0 622
Msa0831680 AT1G11260.1 58.661 508 204 5 1 504 1 506 0.0 600
Msa0831680 AT1G50310.1 58.436 486 197 5 18 501 21 503 0.0 592
Msa0831680 AT5G26250.1 60.685 496 189 4 13 506 13 504 0.0 592
Msa0831680 AT3G19940.1 57.113 485 204 4 18 501 21 502 0.0 584
Msa0831680 AT3G05960.1 59.719 499 195 4 14 510 13 507 0.0 582
Msa0831680 AT5G23270.1 58.600 500 203 3 1 497 1 499 0.0 582
Msa0831680 AT1G77210.2 56.917 506 207 8 1 500 1 501 0.0 576
Msa0831680 AT1G77210.1 56.917 506 207 8 1 500 1 501 0.0 576
Msa0831680 AT4G21480.1 57.895 494 200 5 9 499 10 498 0.0 559
Msa0831680 AT3G19930.1 53.033 511 235 4 1 509 1 508 0.0 554
Msa0831680 AT3G19930.2 53.033 511 235 4 1 509 1 508 0.0 554
Msa0831680 AT1G34580.1 48.915 507 246 7 1 499 1 502 1.62e-176 507
Msa0831680 AT1G07340.1 52.333 493 230 3 9 500 10 498 1.37e-173 499
Msa0831680 AT5G61520.1 48.290 497 245 7 16 506 18 508 1.15e-161 469
Msa0831680 AT1G34580.2 47.702 457 228 6 49 499 1 452 8.11e-154 447
Msa0831680 AT1G50310.2 57.102 352 147 4 152 501 11 360 2.54e-149 433
Msa0831680 AT5G61520.2 47.097 465 234 7 48 506 2 460 6.29e-145 425
Msa0831680 AT1G77210.3 58.000 350 143 4 152 500 6 352 2.52e-144 419
Msa0831680 AT2G16120.1 30.237 506 302 10 26 507 30 508 1.57e-58 202
Msa0831680 AT2G16130.1 30.083 482 287 9 26 483 30 485 4.32e-58 201
Msa0831680 AT3G18830.1 27.863 524 332 8 26 529 40 537 6.71e-57 199
Msa0831680 AT2G18480.1 30.361 471 282 11 36 485 36 481 1.20e-55 195
Msa0831680 AT4G36670.1 30.739 501 286 14 12 483 7 475 2.34e-55 194
Msa0831680 AT2G43330.1 29.387 473 302 10 26 491 35 482 2.40e-53 189
Msa0831680 AT1G30220.1 32.075 371 220 8 20 381 26 373 3.06e-51 184
Msa0831680 AT5G59250.1 32.101 514 295 15 3 489 72 558 6.40e-50 180
Msa0831680 AT1G08930.1 30.608 477 287 11 13 483 49 487 2.77e-45 166
Msa0831680 AT1G08930.2 30.608 477 287 11 13 483 49 487 2.77e-45 166
Msa0831680 AT2G20780.1 27.215 474 300 11 23 483 55 496 1.28e-44 165
Msa0831680 AT2G20780.2 27.670 412 277 7 83 483 37 438 1.20e-43 161
Msa0831680 AT4G16480.2 33.051 354 198 8 19 359 24 351 4.74e-43 162
Msa0831680 AT4G16480.3 33.051 354 198 8 19 359 24 351 4.74e-43 162
Msa0831680 AT4G16480.1 33.051 354 198 8 19 359 24 351 4.74e-43 162
Msa0831680 AT5G16150.2 27.368 475 307 10 12 483 99 538 5.98e-43 161
Msa0831680 AT5G16150.1 27.368 475 307 10 12 483 99 538 5.98e-43 161
Msa0831680 AT5G16150.3 27.368 475 307 10 12 483 99 538 5.98e-43 161
Msa0831680 AT3G05400.1 27.484 473 303 9 15 483 19 455 7.29e-43 159
Msa0831680 AT1G08890.1 29.707 478 294 11 15 487 20 460 7.78e-43 159
Msa0831680 AT1G75220.1 29.299 471 295 10 19 483 44 482 1.39e-41 156
Msa0831680 AT3G05165.3 26.526 475 305 8 15 483 23 459 1.57e-41 155
Msa0831680 AT3G05165.2 26.526 475 305 8 15 483 23 459 1.57e-41 155
Msa0831680 AT3G05165.1 26.526 475 305 8 15 483 23 459 1.57e-41 155
Msa0831680 AT5G27350.1 27.984 486 302 11 13 490 22 467 2.07e-41 155
Msa0831680 AT5G17010.1 28.571 483 297 17 23 486 48 501 1.50e-40 153
Msa0831680 AT5G17010.3 28.571 483 297 17 23 486 48 501 1.50e-40 153
Msa0831680 AT5G17010.4 28.571 483 297 17 23 486 48 501 1.50e-40 153
Msa0831680 AT1G08900.5 29.925 401 266 6 85 483 25 412 1.80e-40 151
Msa0831680 AT3G05155.1 27.215 474 307 10 15 486 20 457 1.84e-40 152
Msa0831680 AT1G08900.1 29.925 401 266 6 85 483 67 454 4.05e-40 151
Msa0831680 AT1G08900.2 29.925 401 266 6 85 483 67 454 4.05e-40 151
Msa0831680 AT1G08900.3 29.925 401 266 6 85 483 59 446 4.36e-40 151
Msa0831680 AT2G35740.1 29.223 373 233 8 20 382 24 375 5.31e-40 153
Msa0831680 AT3G05160.1 26.050 476 306 9 15 483 14 450 1.61e-38 147
Msa0831680 AT5G27360.1 26.250 480 318 8 13 490 26 471 1.74e-38 147
Msa0831680 AT3G03090.1 28.333 480 288 17 30 486 55 501 1.96e-38 147
Msa0831680 AT3G05150.2 28.425 489 309 13 11 492 24 478 2.33e-38 147
Msa0831680 AT3G05150.1 28.361 476 304 12 11 483 24 465 5.62e-38 145
Msa0831680 AT3G05150.3 28.361 476 304 12 11 483 24 465 5.62e-38 145
Msa0831680 AT5G27360.3 26.250 480 318 8 13 490 74 519 5.83e-38 146
Msa0831680 AT3G05160.3 27.586 406 269 7 85 483 14 401 1.06e-37 144
Msa0831680 AT3G05160.2 27.586 406 269 7 85 483 14 401 1.06e-37 144
Msa0831680 AT3G05400.2 30.108 372 234 8 123 483 79 435 3.98e-37 142
Msa0831680 AT1G05030.1 26.898 461 300 12 28 483 85 513 5.98e-37 144
Msa0831680 AT1G08920.1 27.061 473 305 10 15 483 25 461 1.78e-36 141
Msa0831680 AT2G48020.2 25.806 403 284 5 83 483 68 457 2.02e-36 141
Msa0831680 AT2G48020.1 25.806 403 284 5 83 483 68 457 2.02e-36 141
Msa0831680 AT1G19450.1 27.601 471 303 10 19 483 45 483 2.47e-36 141
Msa0831680 AT3G05165.4 27.078 421 262 9 15 428 23 405 2.79e-36 140
Msa0831680 AT3G05165.5 27.078 421 262 9 15 428 23 405 2.79e-36 140
Msa0831680 AT3G05165.6 27.078 421 262 9 15 428 23 405 3.68e-36 141
Msa0831680 AT5G18840.1 28.125 416 273 7 83 490 84 481 4.17e-36 140
Msa0831680 AT1G05030.2 27.317 410 281 9 79 483 64 461 4.76e-36 140
Msa0831680 AT1G54730.2 26.303 403 282 5 83 483 72 461 3.97e-34 135
Msa0831680 AT1G08920.2 26.667 480 305 11 15 483 25 468 4.08e-34 135
Msa0831680 AT1G79820.2 26.667 405 277 7 84 483 97 486 1.55e-33 133
Msa0831680 AT1G79820.1 26.667 405 277 7 84 483 97 486 1.55e-33 133
Msa0831680 AT4G04750.3 27.559 381 259 6 107 483 144 511 1.94e-33 134
Msa0831680 AT4G04760.3 28.325 406 273 7 83 483 12 404 2.18e-33 132
Msa0831680 AT1G08900.4 29.167 360 240 6 85 442 67 413 2.90e-33 132
Msa0831680 AT4G04750.1 27.559 381 259 6 107 483 100 467 3.07e-33 132
Msa0831680 AT4G04750.2 27.559 381 259 6 107 483 100 467 3.07e-33 132
Msa0831680 AT4G04760.1 28.325 406 273 7 83 483 71 463 4.22e-33 132
Msa0831680 AT1G08920.3 26.835 436 279 10 15 446 25 424 4.94e-33 131
Msa0831680 AT5G27360.2 26.849 365 252 6 128 490 16 367 3.35e-32 127
Msa0831680 AT5G27360.5 26.849 365 252 6 128 490 16 367 3.35e-32 127
Msa0831680 AT1G67300.2 24.619 394 284 6 93 483 103 486 3.51e-31 127
Msa0831680 AT1G67300.1 24.810 395 281 7 93 483 103 485 1.21e-30 125
Msa0831680 AT1G67300.3 24.810 395 281 7 93 483 103 485 1.21e-30 125
Msa0831680 AT1G54730.3 25.414 362 255 5 83 442 72 420 3.64e-30 123
Msa0831680 AT1G67300.6 24.370 357 253 7 93 446 103 445 4.63e-30 123
Msa0831680 AT1G67300.7 24.370 357 253 7 93 446 103 445 4.63e-30 123
Msa0831680 AT1G79820.4 26.074 349 245 5 84 431 97 433 5.38e-30 122
Msa0831680 AT1G67300.4 25.000 332 234 6 93 421 103 422 1.88e-29 120
Msa0831680 AT1G67300.5 25.000 332 234 6 93 421 103 422 1.88e-29 120
Msa0831680 AT5G27360.4 26.098 410 267 8 13 420 26 401 2.11e-29 120
Msa0831680 AT4G04760.2 26.847 406 276 7 83 483 71 460 9.47e-28 116
Msa0831680 AT1G54730.5 26.303 403 261 9 83 483 72 440 9.50e-28 116
Msa0831680 AT3G05155.2 27.219 338 212 8 16 352 21 325 8.60e-27 111
Msa0831680 AT1G54730.9 25.513 341 239 5 83 421 72 399 2.31e-25 108
Msa0831680 AT1G54730.7 25.513 341 239 5 83 421 72 399 2.31e-25 108
Msa0831680 AT3G20460.1 25.458 491 310 16 5 483 36 482 5.79e-25 108
Msa0831680 AT1G54730.11 28.413 271 182 4 84 352 73 333 1.38e-24 105
Msa0831680 AT2G48020.4 27.425 299 205 4 83 379 68 356 3.38e-24 105
Msa0831680 AT1G54730.4 25.414 362 234 9 83 442 72 399 9.58e-24 103
Msa0831680 AT2G48020.3 28.676 272 182 4 83 352 68 329 2.00e-22 99.4
Msa0831680 AT1G54730.10 27.236 246 170 3 84 327 73 311 1.27e-21 96.3
Msa0831680 AT1G54730.6 27.236 246 170 3 84 327 73 311 1.27e-21 96.3
Msa0831680 AT1G54730.8 27.236 246 170 3 83 326 72 310 4.63e-21 95.9
Msa0831680 AT1G79820.3 23.951 405 240 8 84 483 97 438 3.77e-20 93.6
Msa0831680 AT5G17010.2 24.948 481 257 18 23 486 45 438 1.02e-19 92.4
Msa0831680 AT3G51490.1 27.016 248 158 7 22 267 4 230 6.85e-18 87.8
Msa0831680 AT3G51490.2 27.016 248 158 7 22 267 4 230 7.22e-18 87.8
Msa0831680 AT3G51490.2 26.230 244 151 6 260 485 486 718 4.19e-14 75.9
Msa0831680 AT3G51490.3 29.508 183 126 3 88 269 2 182 1.26e-17 86.7
Msa0831680 AT3G51490.3 26.230 244 151 6 260 485 436 668 4.24e-14 75.5
Msa0831680 AT1G79820.5 24.110 365 203 8 127 483 78 376 4.90e-17 83.6
Msa0831680 AT4G35300.9 31.481 162 109 2 107 267 70 230 3.63e-16 82.4
Msa0831680 AT4G35300.2 31.481 162 109 2 107 267 70 230 3.63e-16 82.4
Msa0831680 AT4G35300.3 31.481 162 109 2 107 267 70 230 3.63e-16 82.4
Msa0831680 AT4G35300.4 31.481 162 109 2 107 267 70 230 4.18e-16 82.0
Msa0831680 AT4G35300.8 31.481 162 109 2 107 267 70 230 4.18e-16 82.0
Msa0831680 AT4G35300.6 31.481 162 109 2 107 267 70 230 4.18e-16 82.0
Msa0831680 AT4G35300.11 31.481 162 109 2 107 267 70 230 4.18e-16 82.0
Msa0831680 AT4G35300.1 31.481 162 109 2 107 267 70 230 4.18e-16 82.0
Msa0831680 AT4G35300.10 31.481 162 109 2 107 267 70 230 4.18e-16 82.0
Msa0831680 AT4G35300.7 31.481 162 109 2 107 267 70 230 4.18e-16 82.0
Msa0831680 AT1G20840.2 31.500 200 126 5 77 267 31 228 6.39e-16 81.6
Msa0831680 AT1G20840.1 31.500 200 126 5 77 267 31 228 6.39e-16 81.6

Find 148 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTATGATGTTGGTGTTTC+AGG 0.159582 5_4:-4674039 Msa0831680:intron
CTCTATTCAGCTGTGATTAC+TGG 0.172982 5_4:-4670004 Msa0831680:CDS
CGTCATAATTTCATGTATTA+TGG 0.203173 5_4:-4674085 Msa0831680:CDS
AATTCCCAGTTGTAAATTCT+TGG 0.207115 5_4:-4669386 Msa0831680:exon
TTTGCTAACCTTGTCAATTA+TGG 0.208906 5_4:-4671208 Msa0831680:CDS
GTCTGCCTTCGCTTGGTCTT+GGG 0.222884 5_4:-4669777 Msa0831680:CDS
TTGTGATCATGCAGAATTTC+AGG 0.239240 5_4:-4670544 Msa0831680:intron
CAACATTGAACCCGAGTTCT+TGG 0.266059 5_4:-4670365 Msa0831680:CDS
TTTATAAACTTTGGATAAGT+TGG 0.272677 5_4:+4674305 None:intergenic
TGTCTGCCTTCGCTTGGTCT+TGG 0.278420 5_4:-4669778 Msa0831680:CDS
AATACTCATTTGGTATTTAC+CGG 0.282234 5_4:+4669359 None:intergenic
GTTGTAAATTCTTGGAATTC+CGG 0.291403 5_4:-4669378 Msa0831680:exon
CTCTCCGTCATTTCTTCAAT+TGG 0.295422 5_4:+4669530 None:intergenic
GGAAACAATAATAATATATA+TGG 0.297930 5_4:-4669184 Msa0831680:three_prime_UTR
TCTTCTTGTTCTTCTCTGGC+TGG 0.298249 5_4:-4669607 Msa0831680:CDS
AAGAAATGACGGAGAGAGTA+TGG 0.302377 5_4:-4669523 Msa0831680:CDS
GGAATCTTCTTGTTCTTCTC+TGG 0.310304 5_4:-4669611 Msa0831680:CDS
ATGTTATGCAACTTCAAGTT+TGG 0.312039 5_4:-4669632 Msa0831680:CDS
CGTTTGAGAAGATTCCTAAA+AGG 0.325463 5_4:+4670301 None:intergenic
GTCGTGATAGCAATCATTCT+TGG 0.343617 5_4:-4669878 Msa0831680:CDS
TTCCACAGACAAAATTTGTA+TGG 0.359544 5_4:+4669203 None:intergenic
TCCTATACAACTCGTACATT+GGG 0.361220 5_4:-4672717 Msa0831680:CDS
TTGGAGACTATCTCTTGGTT+TGG 0.361405 5_4:-4670512 Msa0831680:CDS
CCGGCCATGGTTTGTTAGCT+AGG 0.361788 5_4:+4674162 None:intergenic
TTGGTTCTGGAAGAGGTTTA+TGG 0.367480 5_4:-4669492 Msa0831680:CDS
AGAATTTACAACTGGGAATT+CGG 0.368074 5_4:+4669389 None:intergenic
GAGGCTTCGCCACGAGTGGC+GGG 0.369010 5_4:-4674137 Msa0831680:CDS
AGTGAGAAGAGAAGAGTTGT+TGG 0.374266 5_4:+4674240 None:intergenic
GAATTCCAAGAATTTACAAC+TGG 0.377660 5_4:+4669381 None:intergenic
TATGGAAGCAACATTGGTTC+TGG 0.378484 5_4:-4669505 Msa0831680:CDS
AGACTCACCATGTTGATTGC+TGG 0.383024 5_4:-4672690 Msa0831680:CDS
AGTTAATGCAGCTAGGTATA+AGG 0.385835 5_4:+4672755 None:intergenic
CTTTCGTGTCTGCCTTCGCT+TGG 0.391512 5_4:-4669784 Msa0831680:CDS
TTATAAACTTTGGATAAGTT+GGG 0.392960 5_4:+4674306 None:intergenic
CCTCGCTCAATGAGACTGTT+GGG 0.394071 5_4:+4670436 None:intergenic
CTTCTTGTTCTTCTCTGGCT+GGG 0.396680 5_4:-4669606 Msa0831680:CDS
GTTCACCTTTGTCATTGCTC+AGG 0.398780 5_4:-4669666 Msa0831680:CDS
CCATGAGTGCACCCACTGTT+AGG 0.399601 5_4:+4670470 None:intergenic
AACCTTGCCATGCTCATTGT+TGG 0.400156 5_4:-4672624 Msa0831680:CDS
GCAATTTCTGAGAGGAAAAC+TGG 0.403356 5_4:+4671295 None:intergenic
ATCTTACTTGGTTGTGGTGT+TGG 0.408209 5_4:-4672597 Msa0831680:CDS
AGACTATCTCTTGGTTTGGC+TGG 0.409374 5_4:-4670508 Msa0831680:CDS
GGCGAAGCCTCCGCCGGCCA+TGG 0.416696 5_4:+4674149 None:intergenic
CCTAACAGTGGGTGCACTCA+TGG 0.419887 5_4:-4670470 Msa0831680:CDS
ATCCTATACAACTCGTACAT+TGG 0.422729 5_4:-4672718 Msa0831680:CDS
ATTGGTATGTTCTTCGTCTC+GGG 0.424874 5_4:+4669548 None:intergenic
AATTGGTATGTTCTTCGTCT+CGG 0.425080 5_4:+4669547 None:intergenic
AGCAACATTGGTTCTGGAAG+AGG 0.429089 5_4:-4669499 Msa0831680:CDS
CGTTGATGCCGGTGAATTGT+TGG 0.432613 5_4:+4670086 None:intergenic
TAGAGACTAAAATACTCATT+TGG 0.435991 5_4:+4669349 None:intergenic
CCCCAATGTACGAGTTGTAT+AGG 0.437683 5_4:+4672716 None:intergenic
ACTGTCTTTCTGTATACTGC+TGG 0.441904 5_4:+4672846 None:intergenic
GAGGTGGTATTTATAAACTT+TGG 0.442512 5_4:+4674296 None:intergenic
GGAGGCTTCGCCACGAGTGG+CGG 0.447870 5_4:-4674138 Msa0831680:CDS
GGCAGAATCTTACTTGGTTG+TGG 0.448889 5_4:-4672603 Msa0831680:CDS
TGGGGTTGGAGACTATCTCT+TGG 0.452302 5_4:-4670517 Msa0831680:CDS
GGAAGTATAGAGAGTGTTTG+AGG 0.454087 5_4:+4674277 None:intergenic
ACCTCGCTCAATGAGACTGT+TGG 0.455453 5_4:+4670435 None:intergenic
GGAGCTTTGTGAGGCAAGTC+GGG 0.455707 5_4:-4670344 Msa0831680:CDS
AAAGCTCCACGAATTCTTGA+AGG 0.464569 5_4:+4671271 None:intergenic
CCCACTGTTAGGAGAAGTGC+TGG 0.467123 5_4:+4670481 None:intergenic
GGTCTTGGGGTCCTCTCGGT+TGG 0.470775 5_4:-4669763 Msa0831680:CDS
ATTGTTGGCAGAATCTTACT+TGG 0.471393 5_4:-4672609 Msa0831680:CDS
CTTATGTTCGGTTATGATGT+TGG 0.471516 5_4:-4674048 Msa0831680:CDS
CAGTAATCACAGCTGAATAG+AGG 0.471861 5_4:+4670005 None:intergenic
AGCAATCATTCTTGGGATCA+AGG 0.479075 5_4:-4669870 Msa0831680:CDS
TGAAAGATCGTCGGAATGAT+CGG 0.481000 5_4:+4669844 None:intergenic
CATGCAGAATTTCAGGTGGA+TGG 0.482057 5_4:-4670537 Msa0831680:intron
CTCACAAAGCTCCAAGAACT+CGG 0.482140 5_4:+4670354 None:intergenic
TCTGCCTTCGCTTGGTCTTG+GGG 0.483271 5_4:-4669776 Msa0831680:CDS
GAATTTCAGGTGGATGGGGT+TGG 0.483636 5_4:-4670531 Msa0831680:CDS
TGGAGCTTTGTGAGGCAAGT+CGG 0.484225 5_4:-4670345 Msa0831680:CDS
AAACATGATCGCGTTGATGC+CGG 0.485208 5_4:+4670075 None:intergenic
GTTTGAGAAGATTCCTAAAA+GGG 0.487028 5_4:+4670302 None:intergenic
TCGTGATAGCAATCATTCTT+GGG 0.491265 5_4:-4669877 Msa0831680:CDS
GCTTGGTCTTGGGGTCCTCT+CGG 0.491457 5_4:-4669767 Msa0831680:CDS
GGCTTCGCCACGAGTGGCGG+GGG 0.492080 5_4:-4674135 Msa0831680:CDS
AGTTTAATTTAAGCTATACA+TGG 0.495407 5_4:-4669279 Msa0831680:three_prime_UTR
GCTACCGGTGGTCTTATGTT+CGG 0.496699 5_4:-4674060 Msa0831680:CDS
TACTGCAAATATGATAATCA+AGG 0.498116 5_4:-4672798 Msa0831680:CDS
GTGAGAAGAGAAGAGTTGTT+GGG 0.500023 5_4:+4674241 None:intergenic
ATGCAGAATTTCAGGTGGAT+GGG 0.500388 5_4:-4670536 Msa0831680:intron
TTCCAATGGTGACATTGAGC+TGG 0.502760 5_4:+4671236 None:intergenic
CATTCCGACGATCTTTCAAA+AGG 0.506626 5_4:-4669839 Msa0831680:CDS
GGCAAGTCGGGTTGCTAAAG+AGG 0.509254 5_4:-4670332 Msa0831680:CDS
CCACTCGAGACTCGATCAGC+TGG 0.513496 5_4:-4669719 Msa0831680:CDS
TGCAGAATTTCAGGTGGATG+GGG 0.517632 5_4:-4670535 Msa0831680:intron
GGTTTGCCTAAAAGTAATTG+AGG 0.517928 5_4:+4674183 None:intergenic
GAGCGAGGTCGCCTTGAAGA+AGG 0.521285 5_4:-4670421 Msa0831680:CDS
TTCCAGCTCAATGTCACCAT+TGG 0.524107 5_4:-4671238 Msa0831680:CDS
TACTTGTAATGCGATGGAAA+TGG 0.527060 5_4:+4670258 None:intergenic
TCATGTATTATGGCTGCTAC+CGG 0.531696 5_4:-4674075 Msa0831680:CDS
CTCGCTCAATGAGACTGTTG+GGG 0.532113 5_4:+4670437 None:intergenic
AGAAAGACAGTGTTAGAGAC+AGG 0.534172 5_4:-4672834 Msa0831680:CDS
ACTCGTGGCGAAGCCTCCGC+CGG 0.537860 5_4:+4674143 None:intergenic
AGGCTTCGCCACGAGTGGCG+GGG 0.539960 5_4:-4674136 Msa0831680:CDS
TAACAAACCATGGCCGGCGG+AGG 0.542312 5_4:-4674156 Msa0831680:exon
GGCGGAGGCTTCGCCACGAG+TGG 0.543900 5_4:-4674141 Msa0831680:CDS
TCGAGTGGAAATGTCTCACT+TGG 0.551130 5_4:+4669734 None:intergenic
CGAGTTCTTGGAGCTTTGTG+AGG 0.551421 5_4:-4670353 Msa0831680:CDS
ATCTACTCAGTCGATAAACT+TGG 0.551896 5_4:-4669950 Msa0831680:CDS
CGTATGTTGCTGTTGGAAGC+CGG 0.555363 5_4:-4669923 Msa0831680:CDS
TGGTCGTCGTATGTTGCTGT+TGG 0.558566 5_4:-4669930 Msa0831680:CDS
ATTGCACCTTCAAGAATTCG+TGG 0.560498 5_4:-4671277 Msa0831680:CDS
AGAGAGTATGGAAGCAACAT+TGG 0.564824 5_4:-4669511 Msa0831680:CDS
AGTACTTACTTGTAATGCGA+TGG 0.565746 5_4:+4670252 None:intergenic
CCTAGCTAACAAACCATGGC+CGG 0.567190 5_4:-4674162 Msa0831680:exon
TTGTTGGGAAATATGAGTAA+TGG 0.569770 5_4:+4674256 None:intergenic
ACAAAGAAGAAACAGGGAAG+AGG 0.571061 5_4:+4669238 None:intergenic
CCAGTGTTGTTCAATACAGT+GGG 0.572265 5_4:-4670046 Msa0831680:CDS
CTGTCTTTCTGTATACTGCT+GGG 0.578586 5_4:+4672847 None:intergenic
CATACCAATTGAAGAAATGA+CGG 0.586307 5_4:-4669534 Msa0831680:CDS
AGTAATCACAGCTGAATAGA+GGG 0.588357 5_4:+4670006 None:intergenic
ATACATGAAATTATGACGAT+CGG 0.588772 5_4:+4674090 None:intergenic
AGTGGGTGCACTCATGGTTG+TGG 0.597960 5_4:-4670464 Msa0831680:CDS
TGCCAACAATGAGCATGGCA+AGG 0.598518 5_4:+4672622 None:intergenic
TGTATTATGGCTGCTACCGG+TGG 0.607194 5_4:-4674072 Msa0831680:CDS
CAGGTATTCCAACAATTCAC+CGG 0.608134 5_4:-4670094 Msa0831680:CDS
TCACAAAGCTCCAAGAACTC+GGG 0.610273 5_4:+4670355 None:intergenic
GTTAGCAAACAAAATTCCAA+TGG 0.610309 5_4:+4671222 None:intergenic
AGACAAGAACATTTGTACAC+CGG 0.613737 5_4:+4669904 None:intergenic
CCAGCTGATCGAGTCTCGAG+TGG 0.616370 5_4:+4669719 None:intergenic
CCCACTGTATTGAACAACAC+TGG 0.617307 5_4:+4670046 None:intergenic
ACCAGTGTTGTTCAATACAG+TGG 0.620613 5_4:-4670047 Msa0831680:CDS
AGTATAGAGAGTGTTTGAGG+TGG 0.626210 5_4:+4674280 None:intergenic
TGTTAGTGCCATAATTGACA+AGG 0.626375 5_4:+4671200 None:intergenic
GATTCTGCCAACAATGAGCA+TGG 0.628326 5_4:+4672617 None:intergenic
CCAGCACTTCTCCTAACAGT+GGG 0.629032 5_4:-4670481 Msa0831680:CDS
AGGACCCCAAGACCAAGCGA+AGG 0.640865 5_4:+4669772 None:intergenic
TTGAAGGTGCAATTTCTGAG+AGG 0.640916 5_4:+4671287 None:intergenic
TGGAAATGGTAAGTTGAGGT+CGG 0.643846 5_4:+4670272 None:intergenic
CCCAGCACTTCTCCTAACAG+TGG 0.646885 5_4:-4670482 Msa0831680:CDS
CAAACCTAGCTAACAAACCA+TGG 0.649979 5_4:-4674166 Msa0831680:exon
TGATCATGCAGAATTTCAGG+TGG 0.654493 5_4:-4670541 Msa0831680:intron
CCTATACAACTCGTACATTG+GGG 0.657216 5_4:-4672716 Msa0831680:CDS
AGCTAACAAACCATGGCCGG+CGG 0.659283 5_4:-4674159 Msa0831680:exon
AAAAGCCTGAGCAATGACAA+AGG 0.659672 5_4:+4669661 None:intergenic
GCGATGGAAATGGTAAGTTG+AGG 0.663464 5_4:+4670268 None:intergenic
CCCAACAGTCTCATTGAGCG+AGG 0.665093 5_4:-4670436 Msa0831680:CDS
AATTCCAAGAATTTACAACT+GGG 0.665521 5_4:+4669382 None:intergenic
AAGTTGAAGTTAATGCAGCT+AGG 0.666109 5_4:+4672748 None:intergenic
TGAGTAGATAGACACAATTG+TGG 0.671515 5_4:+4669964 None:intergenic
AGATAGACACAATTGTGGAG+AGG 0.673901 5_4:+4669969 None:intergenic
TCGCTCAATGAGACTGTTGG+GGG 0.680548 5_4:+4670438 None:intergenic
ATAACCGAACATAAGACCAC+CGG 0.680970 5_4:+4674056 None:intergenic
CCACTGTTAGGAGAAGTGCT+GGG 0.708624 5_4:+4670482 None:intergenic
GGTTGTGAATCAATGCAATG+AGG 0.740302 5_4:+4674204 None:intergenic
CTTGGAATAAGCCAACCGAG+AGG 0.779255 5_4:+4669752 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATAATAATAATAA+TGG - chr5_4:4674031-4674050 Msa0831680:intron 0.0%
!!! AAATATAATGTTTTATCTTT+TGG + chr5_4:4670106-4670125 None:intergenic 10.0%
!! AGATAAAACATTATATTTAA+TGG - chr5_4:4670108-4670127 Msa0831680:intron 10.0%
!!! TGATTGTAATTAATTTATTT+TGG - chr5_4:4670476-4670495 Msa0831680:CDS 10.0%
!!! ATTATTTTTATTTTGAACTT+AGG - chr5_4:4671317-4671336 Msa0831680:intron 10.0%
!!! ATATCTTACTAAATTATTTT+TGG - chr5_4:4672111-4672130 Msa0831680:intron 10.0%
!!! ATATAAAATCAACAAAATTT+TGG - chr5_4:4672423-4672442 Msa0831680:intron 10.0%
!!! TTATTATTATTTTTGATCTT+AGG + chr5_4:4674025-4674044 None:intergenic 10.0%
!! ACTAATATAAAATACATGTA+GGG + chr5_4:4669549-4669568 None:intergenic 15.0%
!! AACTAATATAAAATACATGT+AGG + chr5_4:4669550-4669569 None:intergenic 15.0%
!! AAAAGTTGAATGTATTTATT+TGG - chr5_4:4669752-4669771 Msa0831680:CDS 15.0%
!!! TTAGTTGTAATTTGTAAATT+GGG - chr5_4:4669910-4669929 Msa0831680:CDS 15.0%
!! TAAATTAAGAATAAATTCAG+GGG + chr5_4:4670055-4670074 None:intergenic 15.0%
!! GTAAATTAAGAATAAATTCA+GGG + chr5_4:4670056-4670075 None:intergenic 15.0%
!! TGTAAATTAAGAATAAATTC+AGG + chr5_4:4670057-4670076 None:intergenic 15.0%
!! TCAAAATTCATTTCAAAATT+TGG + chr5_4:4671540-4671559 None:intergenic 15.0%
!! TATGAAAAGAATCAAAATTA+AGG + chr5_4:4671686-4671705 None:intergenic 15.0%
!!! AAGTGTATGAATTTTATTTT+TGG - chr5_4:4672084-4672103 Msa0831680:intron 15.0%
!!! TTTTTGGTTTAATTTATCAT+AGG - chr5_4:4672127-4672146 Msa0831680:intron 15.0%
!!! GACTTTTAGTTATTAATTTA+TGG + chr5_4:4672470-4672489 None:intergenic 15.0%
!!! AAAAAATATGTTACTTTCAA+GGG + chr5_4:4672657-4672676 None:intergenic 15.0%
!!! TAAAAAATATGTTACTTTCA+AGG + chr5_4:4672658-4672677 None:intergenic 15.0%
!!! ATAAAATCAATCAAGAATTT+TGG - chr5_4:4672750-4672769 Msa0831680:CDS 15.0%
!!! GTTACTTGATAATTTTATTT+TGG - chr5_4:4672786-4672805 Msa0831680:CDS 15.0%
!! GGAAACAATAATAATATATA+TGG - chr5_4:4674266-4674285 Msa0831680:five_prime_UTR 15.0%
!!! TATTTTTTCAGATTAATGTT+TGG - chr5_4:4674291-4674310 Msa0831680:five_prime_UTR 15.0%
!! TTATAAACTTTGGATAAGTT+GGG + chr5_4:4669147-4669166 None:intergenic 20.0%
!! TTTATAAACTTTGGATAAGT+TGG + chr5_4:4669148-4669167 None:intergenic 20.0%
!! CTAATATAAAATACATGTAG+GGG + chr5_4:4669548-4669567 None:intergenic 20.0%
!!! GTTAGTTGTAATTTGTAAAT+TGG - chr5_4:4669909-4669928 Msa0831680:CDS 20.0%
!! TATACTTTGATTATATACGT+CGG + chr5_4:4671225-4671244 None:intergenic 20.0%
!!! CTGTATAACATATTTTATTG+TGG - chr5_4:4671266-4671285 Msa0831680:CDS 20.0%
!! AAAAACATAGAACAAAATAG+AGG + chr5_4:4671446-4671465 None:intergenic 20.0%
!!! CAAAATTGCAAATTTTTAGA+TGG + chr5_4:4671743-4671762 None:intergenic 20.0%
!! TAGTAAGCAAATTGAATTAA+TGG - chr5_4:4672361-4672380 Msa0831680:intron 20.0%
!!! TTGAATTAATGGTTAGTTTA+TGG - chr5_4:4672372-4672391 Msa0831680:intron 20.0%
!!! TTATTATCAATCAAAGTATC+TGG + chr5_4:4672727-4672746 None:intergenic 20.0%
!!! TGCAATTTTTGTTGTTATAT+TGG - chr5_4:4673637-4673656 Msa0831680:intron 20.0%
!!! TATGCAAAGTTATTTTGTTT+TGG - chr5_4:4674144-4674163 Msa0831680:CDS 20.0%
!!! AGTTTAATTTAAGCTATACA+TGG - chr5_4:4674171-4674190 Msa0831680:five_prime_UTR 20.0%
! ATACATGAAATTATGACGAT+CGG + chr5_4:4669363-4669382 None:intergenic 25.0%
! CGTCATAATTTCATGTATTA+TGG - chr5_4:4669365-4669384 Msa0831680:three_prime_UTR 25.0%
! AAGGAACATATATACAAAGA+GGG + chr5_4:4669458-4669477 None:intergenic 25.0%
! AAAAACGTTATATTGTGTAG+AGG + chr5_4:4669481-4669500 None:intergenic 25.0%
! TTGCGTTGAAACAATAATTA+GGG + chr5_4:4669521-4669540 None:intergenic 25.0%
! TTGATTCATCTATATTGTTG+AGG - chr5_4:4669887-4669906 Msa0831680:CDS 25.0%
! CATTATATTTAATGGTTGAG+TGG - chr5_4:4670116-4670135 Msa0831680:intron 25.0%
!!! TTATTTTGTACCGAGAAAAA+CGG - chr5_4:4670188-4670207 Msa0831680:intron 25.0%
!!! ATATATTGAACCGTTTTTCT+CGG + chr5_4:4670201-4670220 None:intergenic 25.0%
! AAAACGGTTCAATATATTGT+TGG - chr5_4:4670204-4670223 Msa0831680:intron 25.0%
! ATTAGTAGTTGAGAGATTTA+GGG + chr5_4:4670308-4670327 None:intergenic 25.0%
! AATTAGTAGTTGAGAGATTT+AGG + chr5_4:4670309-4670328 None:intergenic 25.0%
! ATCCAAAAAAACCAAACTTA+AGG - chr5_4:4670337-4670356 Msa0831680:CDS 25.0%
! TCCAAAAAAACCAAACTTAA+GGG - chr5_4:4670338-4670357 Msa0831680:CDS 25.0%
! AAAACAAAGTGAATTTGGTT+TGG + chr5_4:4670407-4670426 None:intergenic 25.0%
!!! AAACCAAATTCACTTTGTTT+TGG - chr5_4:4670406-4670425 Msa0831680:CDS 25.0%
! TACTGCAAATATGATAATCA+AGG - chr5_4:4670652-4670671 Msa0831680:intron 25.0%
! GGACTCAAAATAAAAATACA+TGG + chr5_4:4671367-4671386 None:intergenic 25.0%
! AATTGAGTTCTCATTCTAAA+TGG + chr5_4:4671505-4671524 None:intergenic 25.0%
! TCAACTATGTCATGTATTAT+AGG - chr5_4:4671941-4671960 Msa0831680:intron 25.0%
!!! CTATATCTAACAATTTTGAC+CGG + chr5_4:4672400-4672419 None:intergenic 25.0%
!!! TCCATTTTTTTAGTCTACAA+GGG - chr5_4:4672548-4672567 Msa0831680:intron 25.0%
! TCATTTGTTTGTTCAAAAAC+AGG - chr5_4:4673337-4673356 Msa0831680:intron 25.0%
! AATTCCAAGAATTTACAACT+GGG + chr5_4:4674071-4674090 None:intergenic 25.0%
! AATACTCATTTGGTATTTAC+CGG + chr5_4:4674094-4674113 None:intergenic 25.0%
! TAGAGACTAAAATACTCATT+TGG + chr5_4:4674104-4674123 None:intergenic 25.0%
GAGGTGGTATTTATAAACTT+TGG + chr5_4:4669157-4669176 None:intergenic 30.0%
TTGTTGGGAAATATGAGTAA+TGG + chr5_4:4669197-4669216 None:intergenic 30.0%
!! TCACAACCTCAATTACTTTT+AGG - chr5_4:4669261-4669280 Msa0831680:three_prime_UTR 30.0%
GAAGGAACATATATACAAAG+AGG + chr5_4:4669459-4669478 None:intergenic 30.0%
GTTGCGTTGAAACAATAATT+AGG + chr5_4:4669522-4669541 None:intergenic 30.0%
TATAAAATACATGTAGGGGA+TGG + chr5_4:4669544-4669563 None:intergenic 30.0%
TACAGCACATATTGAAAAGA+TGG + chr5_4:4669632-4669651 None:intergenic 30.0%
GGAATCATATCACAGAAATT+TGG - chr5_4:4669931-4669950 Msa0831680:CDS 30.0%
GAAAACAAATCAGCTTCATT+AGG - chr5_4:4669953-4669972 Msa0831680:CDS 30.0%
AAATCAGCTTCATTAGGAAT+TGG - chr5_4:4669959-4669978 Msa0831680:CDS 30.0%
AATAAATTCAGGGGTGATTT+GGG + chr5_4:4670046-4670065 None:intergenic 30.0%
! TTATAATCCATGTGATGATG+TGG - chr5_4:4670149-4670168 Msa0831680:intron 30.0%
ATATTATCCACATCATCACA+TGG + chr5_4:4670159-4670178 None:intergenic 30.0%
!!! ACCCTTAAGTTTGGTTTTTT+TGG + chr5_4:4670342-4670361 None:intergenic 30.0%
CTCAAAAATACCCTTAAGTT+TGG + chr5_4:4670351-4670370 None:intergenic 30.0%
AAGCCAAAACAAAGTGAATT+TGG + chr5_4:4670412-4670431 None:intergenic 30.0%
GGAAAAACTTCTTCAGAAAT+GGG + chr5_4:4670585-4670604 None:intergenic 30.0%
!!! ATTGCTGGTTTTTTCTTCAT+TGG - chr5_4:4670775-4670794 Msa0831680:intron 30.0%
AAAATGGATGATAAGGACTT+TGG + chr5_4:4671393-4671412 None:intergenic 30.0%
TTGGAGAAAAATGGATGATA+AGG + chr5_4:4671400-4671419 None:intergenic 30.0%
!! CCAAAAGTATTGGAGAAAAA+TGG + chr5_4:4671409-4671428 None:intergenic 30.0%
!! CCATTTTTCTCCAATACTTT+TGG - chr5_4:4671406-4671425 Msa0831680:intron 30.0%
AAAATAGAGGTCTACATCAA+TGG + chr5_4:4671433-4671452 None:intergenic 30.0%
TTAAACAAAGAGTTCTGCAT+TGG - chr5_4:4671585-4671604 Msa0831680:intron 30.0%
TTTAGATGGATCATCTATTG+CGG + chr5_4:4671729-4671748 None:intergenic 30.0%
! TATGCATTGACATGTGTAAT+AGG - chr5_4:4671917-4671936 Msa0831680:intron 30.0%
! ATGCATTGACATGTGTAATA+GGG - chr5_4:4671918-4671937 Msa0831680:intron 30.0%
CTATGTCATGTATTATAGGA+CGG - chr5_4:4671945-4671964 Msa0831680:intron 30.0%
TATGTCATGTATTATAGGAC+GGG - chr5_4:4671946-4671965 Msa0831680:intron 30.0%
GTTAGCAAACAAAATTCCAA+TGG + chr5_4:4672231-4672250 None:intergenic 30.0%
TTTGCTAACCTTGTCAATTA+TGG - chr5_4:4672242-4672261 Msa0831680:intron 30.0%
!!! GTCCATTTTTTTAGTCTACA+AGG - chr5_4:4672547-4672566 Msa0831680:intron 30.0%
ACCCTTGTAGACTAAAAAAA+TGG + chr5_4:4672552-4672571 None:intergenic 30.0%
CTTCAACAAATATCTACAAG+AGG + chr5_4:4672687-4672706 None:intergenic 30.0%
! CTCTTGTAGATATTTGTTGA+AGG - chr5_4:4672685-4672704 Msa0831680:CDS 30.0%
GTTTGAGAAGATTCCTAAAA+GGG + chr5_4:4673151-4673170 None:intergenic 30.0%
! ATGTTATGCAACTTCAAGTT+TGG - chr5_4:4673818-4673837 Msa0831680:intron 30.0%
CATACCAATTGAAGAAATGA+CGG - chr5_4:4673916-4673935 Msa0831680:intron 30.0%
AGAATTTACAACTGGGAATT+CGG + chr5_4:4674064-4674083 None:intergenic 30.0%
AATTCCCAGTTGTAAATTCT+TGG - chr5_4:4674064-4674083 Msa0831680:CDS 30.0%
GAATTCCAAGAATTTACAAC+TGG + chr5_4:4674072-4674091 None:intergenic 30.0%
GTTGTAAATTCTTGGAATTC+CGG - chr5_4:4674072-4674091 Msa0831680:CDS 30.0%
! CTTTTCACAAAGAAGAAACA+GGG + chr5_4:4674221-4674240 None:intergenic 30.0%
! ACTTTTCACAAAGAAGAAAC+AGG + chr5_4:4674222-4674241 None:intergenic 30.0%
! TTCCATACAAATTTTGTCTG+TGG - chr5_4:4674245-4674264 Msa0831680:five_prime_UTR 30.0%
TTCCACAGACAAAATTTGTA+TGG + chr5_4:4674250-4674269 None:intergenic 30.0%
GGTTTGCCTAAAAGTAATTG+AGG + chr5_4:4669270-4669289 None:intergenic 35.0%
CTTATGTTCGGTTATGATGT+TGG - chr5_4:4669402-4669421 Msa0831680:CDS 35.0%
ACGTTATATTGTGTAGAGGA+AGG + chr5_4:4669477-4669496 None:intergenic 35.0%
GCACATATTGAAAAGATGGA+GGG + chr5_4:4669628-4669647 None:intergenic 35.0%
AGCACATATTGAAAAGATGG+AGG + chr5_4:4669629-4669648 None:intergenic 35.0%
GAATAAATTCAGGGGTGATT+TGG + chr5_4:4670047-4670066 None:intergenic 35.0%
ACGGTTCAATATATTGTTGG+TGG - chr5_4:4670207-4670226 Msa0831680:intron 35.0%
TTGGATTCCCATGTTATGTT+CGG + chr5_4:4670265-4670284 None:intergenic 35.0%
!! AAGTGAATTTGGTTTGGTGA+AGG + chr5_4:4670401-4670420 None:intergenic 35.0%
ATATATTTGTGGTGACATGC+AGG - chr5_4:4670541-4670560 Msa0831680:intron 35.0%
GGGAAAAACTTCTTCAGAAA+TGG + chr5_4:4670586-4670605 None:intergenic 35.0%
AGTTAATGCAGCTAGGTATA+AGG + chr5_4:4670698-4670717 None:intergenic 35.0%
AAGTTGAAGTTAATGCAGCT+AGG + chr5_4:4670705-4670724 None:intergenic 35.0%
ATCCTATACAACTCGTACAT+TGG - chr5_4:4670732-4670751 Msa0831680:intron 35.0%
TCCTATACAACTCGTACATT+GGG - chr5_4:4670733-4670752 Msa0831680:intron 35.0%
GAAAAAACCAGCAATCAACA+TGG + chr5_4:4670770-4670789 None:intergenic 35.0%
ATTGTTGGCAGAATCTTACT+TGG - chr5_4:4670841-4670860 Msa0831680:intron 35.0%
CTTCATGAACATGCTAATGT+CGG - chr5_4:4671099-4671118 Msa0831680:intron 35.0%
! CATCAATGGACCAAAAGTAT+TGG + chr5_4:4671419-4671438 None:intergenic 35.0%
!!! TTTTGTCATCACTTGTTGTG+TGG - chr5_4:4671659-4671678 Msa0831680:intron 35.0%
TTAGATGGATCATCTATTGC+GGG + chr5_4:4671728-4671747 None:intergenic 35.0%
ATGTCATGTATTATAGGACG+GGG - chr5_4:4671947-4671966 Msa0831680:intron 35.0%
CTATGTACGTACGTGTAATT+TGG + chr5_4:4671991-4672010 None:intergenic 35.0%
AATTACACGTACGTACATAG+TGG - chr5_4:4671991-4672010 Msa0831680:intron 35.0%
TGTTAGTGCCATAATTGACA+AGG + chr5_4:4672253-4672272 None:intergenic 35.0%
!! TAATGGTTAGTTTATGGTGC+CGG - chr5_4:4672378-4672397 Msa0831680:intron 35.0%
CTAAAAGTCTAGCACATGTT+TGG - chr5_4:4672481-4672500 Msa0831680:intron 35.0%
ACAAATATCTACAAGAGGTG+TGG + chr5_4:4672682-4672701 None:intergenic 35.0%
TTGTGATCATGCAGAATTTC+AGG - chr5_4:4672906-4672925 Msa0831680:intron 35.0%
CGTTTGAGAAGATTCCTAAA+AGG + chr5_4:4673152-4673171 None:intergenic 35.0%
TACTTGTAATGCGATGGAAA+TGG + chr5_4:4673195-4673214 None:intergenic 35.0%
AGTACTTACTTGTAATGCGA+TGG + chr5_4:4673201-4673220 None:intergenic 35.0%
AGTAATCACAGCTGAATAGA+GGG + chr5_4:4673447-4673466 None:intergenic 35.0%
TGAGTAGATAGACACAATTG+TGG + chr5_4:4673489-4673508 None:intergenic 35.0%
ATCTACTCAGTCGATAAACT+TGG - chr5_4:4673500-4673519 Msa0831680:intron 35.0%
AGACAAGAACATTTGTACAC+CGG + chr5_4:4673549-4673568 None:intergenic 35.0%
TCGTGATAGCAATCATTCTT+GGG - chr5_4:4673573-4673592 Msa0831680:intron 35.0%
!! ATAGCCTTTTGAAAGATCGT+CGG + chr5_4:4673618-4673637 None:intergenic 35.0%
! GTCAATCTTTGTGCTTTTCT+TGG - chr5_4:4673877-4673896 Msa0831680:intron 35.0%
AATTGGTATGTTCTTCGTCT+CGG + chr5_4:4673906-4673925 None:intergenic 35.0%
!! AGTATAGAGAGTGTTTGAGG+TGG + chr5_4:4669173-4669192 None:intergenic 40.0%
!! GGAAGTATAGAGAGTGTTTG+AGG + chr5_4:4669176-4669195 None:intergenic 40.0%
GTGAGAAGAGAAGAGTTGTT+GGG + chr5_4:4669212-4669231 None:intergenic 40.0%
AGTGAGAAGAGAAGAGTTGT+TGG + chr5_4:4669213-4669232 None:intergenic 40.0%
GGTTGTGAATCAATGCAATG+AGG + chr5_4:4669249-4669268 None:intergenic 40.0%
CAAACCTAGCTAACAAACCA+TGG - chr5_4:4669284-4669303 Msa0831680:three_prime_UTR 40.0%
TCATGTATTATGGCTGCTAC+CGG - chr5_4:4669375-4669394 Msa0831680:exon 40.0%
ATAACCGAACATAAGACCAC+CGG + chr5_4:4669397-4669416 None:intergenic 40.0%
! GGTTATGATGTTGGTGTTTC+AGG - chr5_4:4669411-4669430 Msa0831680:CDS 40.0%
ATGAACCCCGAACATAACAT+GGG - chr5_4:4670255-4670274 Msa0831680:intron 40.0%
TGGATTCCCATGTTATGTTC+GGG + chr5_4:4670264-4670283 None:intergenic 40.0%
AGTTGAGAGATTTAGGGAAG+TGG + chr5_4:4670302-4670321 None:intergenic 40.0%
!! TGAATTTGGTTTGGTGAAGG+TGG + chr5_4:4670398-4670417 None:intergenic 40.0%
CTGTCTTTCTGTATACTGCT+GGG + chr5_4:4670606-4670625 None:intergenic 40.0%
ACTGTCTTTCTGTATACTGC+TGG + chr5_4:4670607-4670626 None:intergenic 40.0%
AGAAAGACAGTGTTAGAGAC+AGG - chr5_4:4670616-4670635 Msa0831680:intron 40.0%
CCTATACAACTCGTACATTG+GGG - chr5_4:4670734-4670753 Msa0831680:intron 40.0%
!!! GCTGGTTTTTTCTTCATTGG+TGG - chr5_4:4670778-4670797 Msa0831680:intron 40.0%
ATCTTACTTGGTTGTGGTGT+TGG - chr5_4:4670853-4670872 Msa0831680:intron 40.0%
!!! TGGTGTTGGTTTTGCTAATC+AGG - chr5_4:4670867-4670886 Msa0831680:intron 40.0%
CACAGTTGCTCTTAGTCATT+AGG - chr5_4:4670999-4671018 Msa0831680:intron 40.0%
TTTGATATAGACGCACGCAA+TGG + chr5_4:4671182-4671201 None:intergenic 40.0%
! GGATGATAAGGACTTTGGAA+TGG + chr5_4:4671388-4671407 None:intergenic 40.0%
TGTCATGTATTATAGGACGG+GGG - chr5_4:4671948-4671967 Msa0831680:intron 40.0%
! GCAATTTCTGAGAGGAAAAC+TGG + chr5_4:4672158-4672177 None:intergenic 40.0%
! TTGAAGGTGCAATTTCTGAG+AGG + chr5_4:4672166-4672185 None:intergenic 40.0%
ATTGCACCTTCAAGAATTCG+TGG - chr5_4:4672173-4672192 Msa0831680:intron 40.0%
AAAGCTCCACGAATTCTTGA+AGG + chr5_4:4672182-4672201 None:intergenic 40.0%
TACACTTGCCATGTTGTTAG+CGG + chr5_4:4672524-4672543 None:intergenic 40.0%
TAGTCTACAAGGGTCAACTT+TGG - chr5_4:4672558-4672577 Msa0831680:intron 40.0%
GTAGACACTTCATACAAACG+TGG - chr5_4:4672592-4672611 Msa0831680:CDS 40.0%
! TCAATCAAAGTATCTGGCAC+TGG + chr5_4:4672721-4672740 None:intergenic 40.0%
TGATCATGCAGAATTTCAGG+TGG - chr5_4:4672909-4672928 Msa0831680:intron 40.0%
! ATGCAGAATTTCAGGTGGAT+GGG - chr5_4:4672914-4672933 Msa0831680:intron 40.0%
TTGGAGACTATCTCTTGGTT+TGG - chr5_4:4672938-4672957 Msa0831680:intron 40.0%
GCTGTGCTTAAAAAGATTCG+TGG - chr5_4:4673056-4673075 Msa0831680:intron 40.0%
! TGGAAATGGTAAGTTGAGGT+CGG + chr5_4:4673181-4673200 None:intergenic 40.0%
CAGGTATTCCAACAATTCAC+CGG - chr5_4:4673356-4673375 Msa0831680:intron 40.0%
! ACCAGTGTTGTTCAATACAG+TGG - chr5_4:4673403-4673422 Msa0831680:intron 40.0%
! CCAGTGTTGTTCAATACAGT+GGG - chr5_4:4673404-4673423 Msa0831680:intron 40.0%
CAGTAATCACAGCTGAATAG+AGG + chr5_4:4673448-4673467 None:intergenic 40.0%
CTCTATTCAGCTGTGATTAC+TGG - chr5_4:4673446-4673465 Msa0831680:intron 40.0%
AGATAGACACAATTGTGGAG+AGG + chr5_4:4673484-4673503 None:intergenic 40.0%
GTCGTGATAGCAATCATTCT+TGG - chr5_4:4673572-4673591 Msa0831680:intron 40.0%
AGCAATCATTCTTGGGATCA+AGG - chr5_4:4673580-4673599 Msa0831680:intron 40.0%
TGAAAGATCGTCGGAATGAT+CGG + chr5_4:4673609-4673628 None:intergenic 40.0%
CATTCCGACGATCTTTCAAA+AGG - chr5_4:4673611-4673630 Msa0831680:intron 40.0%
AAAAGCCTGAGCAATGACAA+AGG + chr5_4:4673792-4673811 None:intergenic 40.0%
GGAATCTTCTTGTTCTTCTC+TGG - chr5_4:4673839-4673858 Msa0831680:intron 40.0%
ATTGGTATGTTCTTCGTCTC+GGG + chr5_4:4673905-4673924 None:intergenic 40.0%
CTCTCCGTCATTTCTTCAAT+TGG + chr5_4:4673923-4673942 None:intergenic 40.0%
! AAGAAATGACGGAGAGAGTA+TGG - chr5_4:4673927-4673946 Msa0831680:intron 40.0%
! AGAGAGTATGGAAGCAACAT+TGG - chr5_4:4673939-4673958 Msa0831680:intron 40.0%
!! TATGGAAGCAACATTGGTTC+TGG - chr5_4:4673945-4673964 Msa0831680:intron 40.0%
!! TTGGTTCTGGAAGAGGTTTA+TGG - chr5_4:4673958-4673977 Msa0831680:intron 40.0%
ACAAAGAAGAAACAGGGAAG+AGG + chr5_4:4674215-4674234 None:intergenic 40.0%
CATGAACCCCGAACATAACA+TGG - chr5_4:4670254-4670273 Msa0831680:intron 45.0%
GGATTCCCATGTTATGTTCG+GGG + chr5_4:4670263-4670282 None:intergenic 45.0%
AGTGGCTCACATGCAAAGAT+TGG + chr5_4:4670284-4670303 None:intergenic 45.0%
!! TTTGGTTTGGTGAAGGTGGT+GGG + chr5_4:4670394-4670413 None:intergenic 45.0%
!! ATTTGGTTTGGTGAAGGTGG+TGG + chr5_4:4670395-4670414 None:intergenic 45.0%
TATTTGTGGTGACATGCAGG+TGG - chr5_4:4670544-4670563 Msa0831680:intron 45.0%
CCCCAATGTACGAGTTGTAT+AGG + chr5_4:4670737-4670756 None:intergenic 45.0%
! AGACTCACCATGTTGATTGC+TGG - chr5_4:4670760-4670779 Msa0831680:intron 45.0%
AACCTTGCCATGCTCATTGT+TGG - chr5_4:4670826-4670845 Msa0831680:intron 45.0%
GATTCTGCCAACAATGAGCA+TGG + chr5_4:4670836-4670855 None:intergenic 45.0%
GGCAGAATCTTACTTGGTTG+TGG - chr5_4:4670847-4670866 Msa0831680:intron 45.0%
ATGGATCATCTATTGCGGGA+CGG + chr5_4:4671724-4671743 None:intergenic 45.0%
TTCCAGCTCAATGTCACCAT+TGG - chr5_4:4672212-4672231 Msa0831680:intron 45.0%
TTCCAATGGTGACATTGAGC+TGG + chr5_4:4672217-4672236 None:intergenic 45.0%
ATGTGTTCCCGCTAACAACA+TGG - chr5_4:4672513-4672532 Msa0831680:intron 45.0%
ACACTTGCCATGTTGTTAGC+GGG + chr5_4:4672523-4672542 None:intergenic 45.0%
TCTACAAGGGTCAACTTTGG+TGG - chr5_4:4672561-4672580 Msa0831680:intron 45.0%
! TATCTGGCACTGGACTATGT+GGG + chr5_4:4672711-4672730 None:intergenic 45.0%
! CATGCAGAATTTCAGGTGGA+TGG - chr5_4:4672913-4672932 Msa0831680:intron 45.0%
! TGCAGAATTTCAGGTGGATG+GGG - chr5_4:4672915-4672934 Msa0831680:intron 45.0%
!! AGACTATCTCTTGGTTTGGC+TGG - chr5_4:4672942-4672961 Msa0831680:intron 45.0%
! GCACAGCTTTTCCTTCTTCA+AGG + chr5_4:4673043-4673062 None:intergenic 45.0%
CAACATTGAACCCGAGTTCT+TGG - chr5_4:4673085-4673104 Msa0831680:intron 45.0%
TCACAAAGCTCCAAGAACTC+GGG + chr5_4:4673098-4673117 None:intergenic 45.0%
CTCACAAAGCTCCAAGAACT+CGG + chr5_4:4673099-4673118 None:intergenic 45.0%
! AAGAGGTCAAGCACCCTTTT+AGG - chr5_4:4673135-4673154 Msa0831680:intron 45.0%
GCGATGGAAATGGTAAGTTG+AGG + chr5_4:4673185-4673204 None:intergenic 45.0%
! AAACATGATCGCGTTGATGC+CGG + chr5_4:4673378-4673397 None:intergenic 45.0%
CCCACTGTATTGAACAACAC+TGG + chr5_4:4673407-4673426 None:intergenic 45.0%
TCGAGTGGAAATGTCTCACT+TGG + chr5_4:4673719-4673738 None:intergenic 45.0%
GTTCACCTTTGTCATTGCTC+AGG - chr5_4:4673784-4673803 Msa0831680:intron 45.0%
TCTTCTTGTTCTTCTCTGGC+TGG - chr5_4:4673843-4673862 Msa0831680:intron 45.0%
CTTCTTGTTCTTCTCTGGCT+GGG - chr5_4:4673844-4673863 Msa0831680:intron 45.0%
!! AGCAACATTGGTTCTGGAAG+AGG - chr5_4:4673951-4673970 Msa0831680:intron 45.0%
!! TTAATTAATATATATATTTG+TGG - chr5_4:4670530-4670549 Msa0831680:CDS 5.0%
!! GTATATTAATAAAAAAAATA+TGG + chr5_4:4671782-4671801 None:intergenic 5.0%
CCTAGCTAACAAACCATGGC+CGG - chr5_4:4669288-4669307 Msa0831680:three_prime_UTR 50.0%
TGTATTATGGCTGCTACCGG+TGG - chr5_4:4669378-4669397 Msa0831680:exon 50.0%
!! GCTACCGGTGGTCTTATGTT+CGG - chr5_4:4669390-4669409 Msa0831680:exon 50.0%
TGCCAACAATGAGCATGGCA+AGG + chr5_4:4670831-4670850 None:intergenic 50.0%
TGGATTGTCACACGTGTCAG+TGG - chr5_4:4671286-4671305 Msa0831680:CDS 50.0%
GGATTGTCACACGTGTCAGT+GGG - chr5_4:4671287-4671306 Msa0831680:CDS 50.0%
ATCATCTATTGCGGGACGGA+TGG + chr5_4:4671720-4671739 None:intergenic 50.0%
! GTATCTGGCACTGGACTATG+TGG + chr5_4:4672712-4672731 None:intergenic 50.0%
! GAATTTCAGGTGGATGGGGT+TGG - chr5_4:4672919-4672938 Msa0831680:intron 50.0%
TGGGGTTGGAGACTATCTCT+TGG - chr5_4:4672933-4672952 Msa0831680:intron 50.0%
!! CCACTGTTAGGAGAAGTGCT+GGG + chr5_4:4672971-4672990 None:intergenic 50.0%
CCAGCACTTCTCCTAACAGT+GGG - chr5_4:4672969-4672988 Msa0831680:intron 50.0%
TCGCTCAATGAGACTGTTGG+GGG + chr5_4:4673015-4673034 None:intergenic 50.0%
CTCGCTCAATGAGACTGTTG+GGG + chr5_4:4673016-4673035 None:intergenic 50.0%
CCTCGCTCAATGAGACTGTT+GGG + chr5_4:4673017-4673036 None:intergenic 50.0%
ACCTCGCTCAATGAGACTGT+TGG + chr5_4:4673018-4673037 None:intergenic 50.0%
! CGAGTTCTTGGAGCTTTGTG+AGG - chr5_4:4673097-4673116 Msa0831680:intron 50.0%
! TGGAGCTTTGTGAGGCAAGT+CGG - chr5_4:4673105-4673124 Msa0831680:intron 50.0%
CGTTGATGCCGGTGAATTGT+TGG + chr5_4:4673367-4673386 None:intergenic 50.0%
TGGTCGTCGTATGTTGCTGT+TGG - chr5_4:4673520-4673539 Msa0831680:intron 50.0%
! CGTATGTTGCTGTTGGAAGC+CGG - chr5_4:4673527-4673546 Msa0831680:intron 50.0%
CTTGGAATAAGCCAACCGAG+AGG + chr5_4:4673701-4673720 None:intergenic 50.0%
!! CCGGCCATGGTTTGTTAGCT+AGG + chr5_4:4669291-4669310 None:intergenic 55.0%
AGCTAACAAACCATGGCCGG+CGG - chr5_4:4669291-4669310 Msa0831680:three_prime_UTR 55.0%
!! GAAGGTGGTGGGAGACTTCA+TGG + chr5_4:4670383-4670402 None:intergenic 55.0%
TATAGGACGGGGGAGTAACG+TGG - chr5_4:4671958-4671977 Msa0831680:intron 55.0%
CCCAGCACTTCTCCTAACAG+TGG - chr5_4:4672968-4672987 Msa0831680:intron 55.0%
! CCCACTGTTAGGAGAAGTGC+TGG + chr5_4:4672972-4672991 None:intergenic 55.0%
CCATGAGTGCACCCACTGTT+AGG + chr5_4:4672983-4673002 None:intergenic 55.0%
CCTAACAGTGGGTGCACTCA+TGG - chr5_4:4672980-4672999 Msa0831680:intron 55.0%
AGTGGGTGCACTCATGGTTG+TGG - chr5_4:4672986-4673005 Msa0831680:intron 55.0%
CCCAACAGTCTCATTGAGCG+AGG - chr5_4:4673014-4673033 Msa0831680:intron 55.0%
! GGAGCTTTGTGAGGCAAGTC+GGG - chr5_4:4673106-4673125 Msa0831680:intron 55.0%
! GGCAAGTCGGGTTGCTAAAG+AGG - chr5_4:4673118-4673137 Msa0831680:intron 55.0%
CTTTCGTGTCTGCCTTCGCT+TGG - chr5_4:4673666-4673685 Msa0831680:intron 55.0%
TGTCTGCCTTCGCTTGGTCT+TGG - chr5_4:4673672-4673691 Msa0831680:intron 55.0%
! GTCTGCCTTCGCTTGGTCTT+GGG - chr5_4:4673673-4673692 Msa0831680:intron 55.0%
!! TCTGCCTTCGCTTGGTCTTG+GGG - chr5_4:4673674-4673693 Msa0831680:intron 55.0%
TAACAAACCATGGCCGGCGG+AGG - chr5_4:4669294-4669313 Msa0831680:three_prime_UTR 60.0%
AAAATCACCCCCGCCACTCG+TGG + chr5_4:4669325-4669344 None:intergenic 60.0%
!! GAGTGGCGGGGGTGATTTTG+AGG - chr5_4:4669326-4669345 Msa0831680:three_prime_UTR 60.0%
GAGCGAGGTCGCCTTGAAGA+AGG - chr5_4:4673029-4673048 Msa0831680:intron 60.0%
AGGACCCCAAGACCAAGCGA+AGG + chr5_4:4673681-4673700 None:intergenic 60.0%
!! GCTTGGTCTTGGGGTCCTCT+CGG - chr5_4:4673683-4673702 Msa0831680:intron 60.0%
CCAGCTGATCGAGTCTCGAG+TGG + chr5_4:4673734-4673753 None:intergenic 60.0%
CCACTCGAGACTCGATCAGC+TGG - chr5_4:4673731-4673750 Msa0831680:intron 60.0%
GGTCTTGGGGTCCTCTCGGT+TGG - chr5_4:4673687-4673706 Msa0831680:intron 65.0%
ACTCGTGGCGAAGCCTCCGC+CGG + chr5_4:4669310-4669329 None:intergenic 70.0%
GGAGGCTTCGCCACGAGTGG+CGG - chr5_4:4669312-4669331 Msa0831680:three_prime_UTR 70.0%
GAGGCTTCGCCACGAGTGGC+GGG - chr5_4:4669313-4669332 Msa0831680:three_prime_UTR 70.0%
AGGCTTCGCCACGAGTGGCG+GGG - chr5_4:4669314-4669333 Msa0831680:three_prime_UTR 70.0%
GGCGGAGGCTTCGCCACGAG+TGG - chr5_4:4669309-4669328 Msa0831680:three_prime_UTR 75.0%
GGCTTCGCCACGAGTGGCGG+GGG - chr5_4:4669315-4669334 Msa0831680:three_prime_UTR 75.0%
! GGCGAAGCCTCCGCCGGCCA+TGG + chr5_4:4669304-4669323 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 4669144 4674328 4669144 ID=Msa0831680;Name=Msa0831680
chr5_4 mRNA 4669144 4674328 4669144 ID=Msa0831680-mRNA-1;Parent=Msa0831680;Name=Msa0831680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=159|1|1|1|1|1|5|250|530
chr5_4 exon 4669144 4670113 4669144 ID=Msa0831680-mRNA-1:exon:1936;Parent=Msa0831680-mRNA-1
chr5_4 exon 4670261 4670552 4670261 ID=Msa0831680-mRNA-1:exon:1935;Parent=Msa0831680-mRNA-1
chr5_4 exon 4671199 4671323 4671199 ID=Msa0831680-mRNA-1:exon:1934;Parent=Msa0831680-mRNA-1
chr5_4 exon 4672584 4672909 4672584 ID=Msa0831680-mRNA-1:exon:1933;Parent=Msa0831680-mRNA-1
chr5_4 exon 4674040 4674328 4674040 ID=Msa0831680-mRNA-1:exon:1932;Parent=Msa0831680-mRNA-1
chr5_4 five_prime_UTR 4674170 4674328 4674170 ID=Msa0831680-mRNA-1:five_prime_utr;Parent=Msa0831680-mRNA-1
chr5_4 CDS 4674040 4674169 4674040 ID=Msa0831680-mRNA-1:cds;Parent=Msa0831680-mRNA-1
chr5_4 CDS 4672584 4672909 4672584 ID=Msa0831680-mRNA-1:cds;Parent=Msa0831680-mRNA-1
chr5_4 CDS 4671199 4671323 4671199 ID=Msa0831680-mRNA-1:cds;Parent=Msa0831680-mRNA-1
chr5_4 CDS 4670261 4670552 4670261 ID=Msa0831680-mRNA-1:cds;Parent=Msa0831680-mRNA-1
chr5_4 CDS 4669394 4670113 4669394 ID=Msa0831680-mRNA-1:cds;Parent=Msa0831680-mRNA-1
chr5_4 three_prime_UTR 4669144 4669393 4669144 ID=Msa0831680-mRNA-1:three_prime_utr;Parent=Msa0831680-mRNA-1
Gene Sequence

>Msa0831680

ATGGCCGGCGGAGGCTTCGCCACGAGTGGCGGGGGTGATTTTGAGGCAAAGATTACTCCGATCGTCATAATTTCATGTATTATGGCTGCTACCGGTGGTCTTATGTTCGGTTATGATGTTGGTGTTTCAGGTGGTGTGACATCTATGCACCCATTTCTGAAGAAGTTTTTCCCAGCAGTATACAGAAAGACAGTGTTAGAGACAGGATTAGATAGTAATTACTGCAAATATGATAATCAAGGATTGCAGTTATTTACATCATCCTTATACCTAGCTGCATTAACTTCAACTTTCTTTGCATCCTATACAACTCGTACATTGGGGAGAAGACTCACCATGTTGATTGCTGGTTTTTTCTTCATTGGTGGAGTTGCTTTCAATGCTGCTGCTCAAAACCTTGCCATGCTCATTGTTGGCAGAATCTTACTTGGTTGTGGTGTTGGTTTTGCTAATCAGGCTGTGCCAGTTTTCCTCTCAGAAATTGCACCTTCAAGAATTCGTGGAGCTTTGAATATACTATTCCAGCTCAATGTCACCATTGGAATTTTGTTTGCTAACCTTGTCAATTATGGCACTAACAAAATTTCAGGTGGATGGGGTTGGAGACTATCTCTTGGTTTGGCTGGTATCCCAGCACTTCTCCTAACAGTGGGTGCACTCATGGTTGTGGACACCCCCAACAGTCTCATTGAGCGAGGTCGCCTTGAAGAAGGAAAAGCTGTGCTTAAAAAGATTCGTGGCACTGACAACATTGAACCCGAGTTCTTGGAGCTTTGTGAGGCAAGTCGGGTTGCTAAAGAGGTCAAGCACCCTTTTAGGAATCTTCTCAAACGCAAGAACCGACCTCAACTTACCATTTCCATCGCATTACAAGTATTCCAACAATTCACCGGCATCAACGCGATCATGTTTTATGCACCAGTGTTGTTCAATACAGTGGGATTCAAGAATGACGCTTCCCTCTATTCAGCTGTGATTACTGGTGCAGTTAATGTCCTCTCCACAATTGTGTCTATCTACTCAGTCGATAAACTTGGTCGTCGTATGTTGCTGTTGGAAGCCGGTGTACAAATGTTCTTGTCTCAAGTCGTGATAGCAATCATTCTTGGGATCAAGGTGACCGATCATTCCGACGATCTTTCAAAAGGCTATGCAATTTTTGTTGTTATATTGGTATGCACTTTCGTGTCTGCCTTCGCTTGGTCTTGGGGTCCTCTCGGTTGGCTTATTCCAAGTGAGACATTTCCACTCGAGACTCGATCAGCTGGACAAAGTGTCACAGTTTGTGTCAACATGTTGTTCACCTTTGTCATTGCTCAGGCTTTTCTCTCTATGTTATGCAACTTCAAGTTTGGAATCTTCTTGTTCTTCTCTGGCTGGGTTTTGATCATGTCAATCTTTGTGCTTTTCTTGGTGCCCGAGACGAAGAACATACCAATTGAAGAAATGACGGAGAGAGTATGGAAGCAACATTGGTTCTGGAAGAGGTTTATGGAAGATGATTATGACAATGAGAAAGTAGCTAATGCAGATTATCCTAAGATCAAAAATAATAATAATAATAATGGATATGATCCGAATTCCCAGTTGTAA
Protein sequence

>Msa0831680

MAGGGFATSGGGDFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMHPFLKKFFPAVYRKTVLETGLDSNYCKYDNQGLQLFTSSLYLAALTSTFFASYTTRTLGRRLTMLIAGFFFIGGVAFNAAAQNLAMLIVGRILLGCGVGFANQAVPVFLSEIAPSRIRGALNILFQLNVTIGILFANLVNYGTNKISGGWGWRLSLGLAGIPALLLTVGALMVVDTPNSLIERGRLEEGKAVLKKIRGTDNIEPEFLELCEASRVAKEVKHPFRNLLKRKNRPQLTISIALQVFQQFTGINAIMFYAPVLFNTVGFKNDASLYSAVITGAVNVLSTIVSIYSVDKLGRRMLLLEAGVQMFLSQVVIAIILGIKVTDHSDDLSKGYAIFVVILVCTFVSAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNMLFTFVIAQAFLSMLCNFKFGIFLFFSGWVLIMSIFVLFLVPETKNIPIEEMTERVWKQHWFWKRFMEDDYDNEKVANADYPKIKNNNNNNGYDPNSQL*