AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1353120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353120 MtrunA17_Chr5g0394341 95.643 482 12 2 1 482 49 521 0.0 933
Msa1353120 MtrunA17_Chr1g0205691 82.869 467 79 1 1 466 49 515 0.0 783
Msa1353120 MtrunA17_Chr1g0205671 72.062 451 125 1 1 451 50 499 0.0 678
Msa1353120 MtrunA17_Chr1g0205681 72.506 451 124 0 1 451 50 500 0.0 678
Msa1353120 MtrunA17_Chr4g0065311 57.333 450 187 4 1 450 48 492 0.0 555
Msa1353120 MtrunA17_Chr5g0445601 59.161 453 180 4 1 453 54 501 0.0 554
Msa1353120 MtrunA17_Chr7g0257631 58.222 450 183 4 1 450 88 532 0.0 546
Msa1353120 MtrunA17_Chr3g0078971 55.556 459 200 4 1 458 50 505 0.0 541
Msa1353120 MtrunA17_Chr5g0437021 57.112 464 192 4 1 460 50 510 0.0 537
Msa1353120 MtrunA17_Chr4g0065324 54.746 453 200 4 1 453 56 503 0.0 527
Msa1353120 MtrunA17_Chr4g0048411 60.128 469 182 4 1 466 50 516 0.0 523
Msa1353120 MtrunA17_Chr1g0164871 56.559 465 192 5 1 459 50 510 0.0 520
Msa1353120 MtrunA17_Chr1g0164851 57.143 455 189 4 1 453 50 500 0.0 520
Msa1353120 MtrunA17_Chr8g0390261 54.194 465 206 6 1 464 53 511 0.0 517
Msa1353120 MtrunA17_Chr6g0486681 56.388 454 193 5 1 453 53 502 5.97e-179 511
Msa1353120 MtrunA17_Chr6g0486671 56.388 454 193 5 1 453 53 502 5.97e-179 511
Msa1353120 MtrunA17_Chr3g0078991 53.377 459 209 5 1 457 50 505 5.56e-177 506
Msa1353120 MtrunA17_Chr8g0390141 52.723 459 212 5 1 458 53 507 4.15e-175 501
Msa1353120 MtrunA17_Chr3g0128081 54.130 460 206 3 1 456 49 507 1.53e-172 495
Msa1353120 MtrunA17_Chr5g0420841 51.398 465 223 2 1 463 48 511 5.30e-172 493
Msa1353120 MtrunA17_Chr5g0417611 54.525 453 203 2 1 451 50 501 8.22e-172 493
Msa1353120 MtrunA17_Chr4g0048051 56.703 455 193 3 1 453 50 502 1.05e-167 483
Msa1353120 MtrunA17_Chr3g0128171 53.982 452 204 3 1 449 1 451 9.12e-167 478
Msa1353120 MtrunA17_Chr3g0085971 51.410 461 221 2 1 459 48 507 2.74e-166 479
Msa1353120 MtrunA17_Chr3g0115741 48.164 463 228 8 1 457 53 509 7.99e-163 470
Msa1353120 MtrunA17_Chr3g0115781 49.024 461 224 8 1 457 52 505 7.08e-161 465
Msa1353120 MtrunA17_Chr3g0115751 48.465 456 227 6 1 453 55 505 2.45e-160 464
Msa1353120 MtrunA17_Chr3g0115721 47.732 463 232 7 1 459 50 506 2.42e-157 456
Msa1353120 MtrunA17_Chr3g0115711 47.020 453 233 5 1 451 50 497 7.32e-157 454
Msa1353120 MtrunA17_Chr3g0078791 50.459 436 193 3 23 456 16 430 4.96e-154 445
Msa1353120 MtrunA17_Chr4g0065351 56.977 344 145 3 113 456 1 341 2.69e-146 422
Msa1353120 MtrunA17_Chr3g0115731 42.521 468 224 10 1 457 50 483 8.38e-132 390
Msa1353120 MtrunA17_Chr3g0115771 35.032 314 156 7 103 413 5 273 1.74e-57 191
Msa1353120 MtrunA17_Chr4g0034681 29.476 458 292 8 28 461 63 513 2.52e-56 195
Msa1353120 MtrunA17_Chr6g0485661 29.710 414 275 6 28 429 91 500 8.32e-56 194
Msa1353120 MtrunA17_Chr1g0213611 31.421 401 264 6 60 451 146 544 2.04e-54 191
Msa1353120 MtrunA17_Chr4g0036021 30.067 449 280 10 49 476 81 516 7.01e-54 189
Msa1353120 MtrunA17_Chr1g0213631 31.144 411 268 9 60 463 53 455 1.21e-53 187
Msa1353120 MtrunA17_Chr3g0144361 30.023 433 272 8 28 435 61 487 1.43e-53 188
Msa1353120 MtrunA17_Chr7g0214451 31.373 408 256 10 51 447 92 486 1.16e-51 182
Msa1353120 MtrunA17_Chr8g0390521 29.157 415 275 7 35 435 58 467 1.59e-49 176
Msa1353120 MtrunA17_Chr5g0432581 28.859 447 289 7 35 457 59 500 2.19e-49 176
Msa1353120 MtrunA17_Chr8g0373531 30.118 425 268 7 35 435 59 478 3.47e-49 176
Msa1353120 MtrunA17_Chr4g0021771 27.423 423 286 9 41 451 101 514 3.61e-48 173
Msa1353120 MtrunA17_Chr2g0282031 27.317 410 283 7 35 435 93 496 1.15e-46 169
Msa1353120 MtrunA17_Chr2g0303731 33.333 339 199 8 4 334 53 372 6.50e-46 168
Msa1353120 MtrunA17_Chr8g0376631 37.698 252 148 5 60 304 94 343 1.93e-43 161
Msa1353120 MtrunA17_Chr6g0457781 29.280 403 269 7 39 438 151 540 2.45e-43 160
Msa1353120 MtrunA17_Chr8g0376611 37.402 254 146 5 60 304 27 276 2.74e-43 159
Msa1353120 MtrunA17_Chr4g0032021 30.024 423 264 10 38 441 147 556 3.33e-43 160
Msa1353120 MtrunA17_Chr8g0373181 29.710 414 279 5 25 435 77 481 5.14e-43 159
Msa1353120 MtrunA17_Chr7g0273281 27.543 403 277 5 35 435 102 491 6.87e-43 159
Msa1353120 MtrunA17_Chr4g0039651 28.806 427 272 9 30 438 87 499 9.91e-43 158
Msa1353120 MtrunA17_Chr7g0250881 29.353 402 270 7 39 438 111 500 2.78e-42 157
Msa1353120 MtrunA17_Chr2g0303701 33.025 324 187 7 4 321 53 352 2.47e-41 155
Msa1353120 MtrunA17_Chr8g0376601 36.220 254 149 6 60 304 94 343 5.14e-41 154
Msa1353120 MtrunA17_Chr1g0155221 30.562 409 267 7 35 437 89 486 1.16e-39 149
Msa1353120 MtrunA17_Chr2g0290181 32.313 294 186 5 51 334 86 376 9.56e-39 148
Msa1353120 MtrunA17_Chr5g0403831 28.132 423 282 7 34 435 70 491 4.10e-38 145
Msa1353120 MtrunA17_Chr5g0446681 49.669 151 71 2 310 456 136 285 9.93e-37 137
Msa1353120 MtrunA17_Chr5g0446681 54.386 114 52 0 36 149 47 160 2.71e-31 122
Msa1353120 MtrunA17_Chr8g0373191 29.843 382 244 8 59 435 91 453 1.20e-36 140
Msa1353120 MtrunA17_Chr7g0259471 25.799 407 287 5 35 439 80 473 4.47e-36 139
Msa1353120 MtrunA17_Chr4g0066581 28.571 406 270 7 35 435 92 482 6.23e-36 139
Msa1353120 MtrunA17_Chr6g0486021 26.904 394 274 6 44 435 101 482 2.01e-35 137
Msa1353120 MtrunA17_Chr4g0004821 25.225 444 313 8 4 443 48 476 3.74e-35 137
Msa1353120 MtrunA17_Chr3g0119401 27.363 402 270 10 46 438 142 530 7.78e-35 136
Msa1353120 MtrunA17_Chr2g0286721 28.010 407 271 10 35 435 89 479 9.34e-35 135
Msa1353120 MtrunA17_Chr3g0121674 28.247 308 207 7 157 459 2 300 9.98e-34 129
Msa1353120 MtrunA17_Chr2g0290161 30.068 296 162 7 51 333 19 282 1.37e-32 129
Msa1353120 MtrunA17_Chr7g0259221 25.307 407 289 5 35 439 82 475 3.28e-32 128
Msa1353120 MtrunA17_Chr4g0065341 48.077 104 52 1 1 104 54 155 8.33e-27 106
Msa1353120 MtrunA17_Chr3g0115761 46.218 119 60 2 1 118 1 116 9.88e-25 99.0
Msa1353120 MtrunA17_Chr7g0228781 49.038 104 50 1 4 104 100 203 2.84e-22 94.7
Msa1353120 MtrunA17_Chr5g0434231 32.022 178 95 2 33 210 3 154 1.52e-21 91.3
Msa1353120 MtrunA17_Chr7g0273261 26.182 275 169 5 209 482 17 258 4.25e-20 89.7
Msa1353120 MtrunA17_Chr3g0144261 35.443 158 96 3 59 213 68 222 2.05e-18 88.6
Msa1353120 MtrunA17_Chr3g0144261 26.693 251 154 8 209 437 473 715 1.47e-12 70.1
Msa1353120 MtrunA17_Chr3g0146061 30.000 180 124 2 43 221 54 232 2.49e-17 85.1
Msa1353120 MtrunA17_Chr3g0146061 25.397 252 156 9 209 437 483 725 1.75e-11 66.6
Msa1353120 MtrunA17_Chr5g0419321 29.834 181 121 3 36 213 75 252 1.76e-16 82.4
Msa1353120 MtrunA17_Chr5g0419321 28.326 233 148 4 216 437 509 733 6.28e-11 65.1
Msa1353120 MtrunA17_Chr5g0404191 30.653 199 129 3 35 231 90 281 3.25e-16 79.3
Msa1353120 MtrunA17_Chr8g0370141 26.860 242 153 7 36 256 47 285 1.20e-15 78.6
Msa1353120 MtrunA17_Chr5g0407441 27.624 181 125 3 36 213 47 224 1.59e-13 73.2
Msa1353120 MtrunA17_Chr6g0450271 34.959 123 69 4 191 304 32 152 1.74e-13 70.5
Msa1353120 MtrunA17_Chr8g0370151 28.947 228 145 5 221 437 125 346 3.38e-13 70.9
Msa1353120 MtrunA17_Chr5g0434241 36.364 99 58 3 208 304 1 96 5.33e-12 62.8
Msa1353120 MtrunA17_Chr6g0450291 36.364 99 58 3 208 304 1 96 4.09e-11 62.0
Msa1353120 MtrunA17_Chr6g0450281 38.356 73 44 1 233 304 24 96 6.07e-11 61.6
Msa1353120 MtrunA17_Chr6g0450241 36.364 99 58 3 208 304 1 96 7.59e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353120 AT5G26340.1 80.705 482 88 2 1 482 50 526 0.0 811
Msa1353120 AT4G02050.2 59.519 457 180 4 1 457 54 505 0.0 572
Msa1353120 AT4G02050.1 59.519 457 180 4 1 457 54 505 0.0 572
Msa1353120 AT5G26250.1 60.652 460 175 4 1 458 49 504 0.0 548
Msa1353120 AT1G50310.1 57.802 455 187 5 1 453 52 503 0.0 548
Msa1353120 AT1G11260.1 59.259 459 182 4 1 456 50 506 0.0 547
Msa1353120 AT3G19940.1 56.388 454 194 4 1 453 52 502 0.0 539
Msa1353120 AT3G05960.1 59.698 464 181 4 1 462 48 507 0.0 539
Msa1353120 AT1G77210.2 57.489 454 186 7 1 452 53 501 0.0 530
Msa1353120 AT1G77210.1 57.489 454 186 7 1 452 53 501 0.0 530
Msa1353120 AT5G23270.1 58.667 450 184 2 1 449 51 499 0.0 522
Msa1353120 AT4G21480.1 58.370 454 181 5 1 451 50 498 1.49e-179 513
Msa1353120 AT3G19930.1 53.030 462 213 3 1 461 50 508 1.01e-176 506
Msa1353120 AT3G19930.2 53.030 462 213 3 1 461 50 508 1.01e-176 506
Msa1353120 AT1G07340.1 51.656 453 214 3 1 452 50 498 2.14e-155 451
Msa1353120 AT1G34580.2 47.702 457 228 6 1 451 1 452 8.15e-155 448
Msa1353120 AT1G34580.1 47.702 457 228 6 1 451 51 502 1.14e-154 449
Msa1353120 AT1G50310.2 57.102 352 147 4 104 453 11 360 3.22e-150 433
Msa1353120 AT5G61520.2 46.983 464 234 7 1 458 3 460 8.89e-146 426
Msa1353120 AT5G61520.1 47.577 454 227 6 1 448 51 499 1.78e-145 426
Msa1353120 AT1G77210.3 57.714 350 144 4 104 452 6 352 1.28e-144 418
Msa1353120 AT2G16120.1 31.140 456 284 8 28 459 59 508 4.01e-57 197
Msa1353120 AT2G16130.1 30.787 432 270 7 28 435 59 485 1.69e-56 196
Msa1353120 AT2G18480.1 30.465 430 276 8 28 437 55 481 1.90e-55 193
Msa1353120 AT3G18830.1 28.270 474 315 6 28 481 69 537 3.50e-55 193
Msa1353120 AT4G36670.1 31.579 437 259 11 28 435 50 475 2.27e-53 187
Msa1353120 AT2G43330.1 31.043 393 257 8 60 445 99 484 2.96e-50 179
Msa1353120 AT1G30220.1 34.138 290 177 6 54 334 90 374 1.52e-46 170
Msa1353120 AT2G20780.1 27.670 412 277 7 35 435 95 496 1.16e-44 164
Msa1353120 AT2G20780.2 27.670 412 277 7 35 435 37 438 2.20e-44 162
Msa1353120 AT5G59250.1 32.754 403 238 11 59 441 169 558 2.96e-44 164
Msa1353120 AT1G08930.1 32.432 407 252 9 35 435 98 487 3.40e-44 162
Msa1353120 AT1G08930.2 32.432 407 252 9 35 435 98 487 3.40e-44 162
Msa1353120 AT1G08890.1 31.296 409 262 8 35 439 67 460 7.68e-43 158
Msa1353120 AT3G05400.1 29.383 405 267 7 35 435 66 455 1.27e-42 157
Msa1353120 AT1G75220.1 31.407 398 253 7 43 435 100 482 1.80e-41 155
Msa1353120 AT5G16150.2 28.500 400 271 6 39 435 151 538 3.01e-41 155
Msa1353120 AT5G16150.1 28.500 400 271 6 39 435 151 538 3.01e-41 155
Msa1353120 AT5G16150.3 28.500 400 271 6 39 435 151 538 3.01e-41 155
Msa1353120 AT1G08900.5 29.925 401 266 6 37 435 25 412 6.06e-41 152
Msa1353120 AT3G05155.1 29.136 405 272 6 35 438 67 457 1.01e-40 152
Msa1353120 AT1G08900.3 29.925 401 266 6 37 435 59 446 1.23e-40 152
Msa1353120 AT3G05165.3 28.148 405 268 6 37 435 72 459 1.34e-40 152
Msa1353120 AT3G05165.2 28.148 405 268 6 37 435 72 459 1.34e-40 152
Msa1353120 AT3G05165.1 28.148 405 268 6 37 435 72 459 1.34e-40 152
Msa1353120 AT1G08900.1 29.925 401 266 6 37 435 67 454 1.48e-40 152
Msa1353120 AT1G08900.2 29.925 401 266 6 37 435 67 454 1.48e-40 152
Msa1353120 AT5G17010.1 29.762 420 265 13 36 438 95 501 1.89e-39 149
Msa1353120 AT5G17010.3 29.762 420 265 13 36 438 95 501 1.89e-39 149
Msa1353120 AT5G17010.4 29.762 420 265 13 36 438 95 501 1.89e-39 149
Msa1353120 AT5G27350.1 28.986 414 267 9 37 442 73 467 2.53e-38 145
Msa1353120 AT3G05160.3 27.586 406 269 7 37 435 14 401 2.67e-38 144
Msa1353120 AT3G05160.2 27.586 406 269 7 37 435 14 401 2.67e-38 144
Msa1353120 AT3G05160.1 27.737 411 262 9 37 435 63 450 5.58e-38 144
Msa1353120 AT3G03090.1 29.147 422 260 13 38 438 98 501 6.83e-38 145
Msa1353120 AT4G16480.2 35.849 265 149 6 60 311 95 351 7.01e-38 146
Msa1353120 AT4G16480.3 35.849 265 149 6 60 311 95 351 7.01e-38 146
Msa1353120 AT4G16480.1 35.849 265 149 6 60 311 95 351 7.01e-38 146
Msa1353120 AT3G05400.2 30.108 372 234 8 75 435 79 435 1.90e-37 143
Msa1353120 AT3G05150.2 29.829 409 263 10 43 444 87 478 3.76e-37 142
Msa1353120 AT3G05150.1 29.798 396 258 9 43 435 87 465 5.49e-37 142
Msa1353120 AT3G05150.3 29.798 396 258 9 43 435 87 465 5.49e-37 142
Msa1353120 AT2G48020.2 25.806 403 284 5 35 435 68 457 7.36e-37 141
Msa1353120 AT2G48020.1 25.806 403 284 5 35 435 68 457 7.36e-37 141
Msa1353120 AT5G18840.1 28.125 416 273 7 35 442 84 481 1.54e-36 141
Msa1353120 AT1G19450.1 29.397 398 261 7 43 435 101 483 2.02e-36 140
Msa1353120 AT1G05030.1 26.716 408 286 8 31 435 116 513 2.17e-36 141
Msa1353120 AT1G05030.2 27.073 410 282 9 31 435 64 461 2.65e-36 140
Msa1353120 AT5G27360.1 27.206 408 282 6 37 442 77 471 7.32e-36 139
Msa1353120 AT2G35740.1 29.846 325 213 8 22 334 54 375 8.93e-36 140
Msa1353120 AT3G05165.6 29.060 351 225 7 37 380 72 405 2.19e-35 138
Msa1353120 AT5G27360.3 27.206 408 282 6 37 442 125 519 2.49e-35 138
Msa1353120 AT3G05165.4 29.060 351 225 7 37 380 72 405 2.76e-35 137
Msa1353120 AT3G05165.5 29.060 351 225 7 37 380 72 405 2.76e-35 137
Msa1353120 AT1G08920.1 28.148 405 272 8 35 435 72 461 4.67e-35 137
Msa1353120 AT1G54730.2 27.475 404 276 7 35 435 72 461 2.47e-34 134
Msa1353120 AT1G79820.2 26.667 405 277 7 36 435 97 486 5.42e-34 134
Msa1353120 AT1G79820.1 26.667 405 277 7 36 435 97 486 5.42e-34 134
Msa1353120 AT4G04760.3 28.325 406 273 7 35 435 12 404 7.29e-34 132
Msa1353120 AT4G04750.3 27.720 386 252 6 59 435 144 511 1.14e-33 133
Msa1353120 AT1G08900.4 29.167 360 240 6 37 394 67 413 1.60e-33 132
Msa1353120 AT4G04750.1 27.720 386 252 6 59 435 100 467 1.73e-33 132
Msa1353120 AT4G04750.2 27.720 386 252 6 59 435 100 467 1.73e-33 132
Msa1353120 AT4G04760.1 28.325 406 273 7 35 435 71 463 3.02e-33 132
Msa1353120 AT5G27360.2 26.849 365 252 6 80 442 16 367 9.08e-33 128
Msa1353120 AT5G27360.5 26.849 365 252 6 80 442 16 367 9.08e-33 128
Msa1353120 AT1G08920.2 27.670 412 272 9 35 435 72 468 1.42e-32 130
Msa1353120 AT1G67300.2 24.810 395 284 6 44 435 102 486 5.87e-32 128
Msa1353120 AT1G67300.1 25.000 396 281 7 44 435 102 485 1.87e-31 127
Msa1353120 AT1G67300.3 25.000 396 281 7 44 435 102 485 1.87e-31 127
Msa1353120 AT1G08920.3 27.989 368 246 8 35 398 72 424 1.96e-31 126
Msa1353120 AT1G67300.6 24.581 358 253 7 44 398 102 445 9.02e-31 124
Msa1353120 AT1G67300.7 24.581 358 253 7 44 398 102 445 9.02e-31 124
Msa1353120 AT1G54730.3 26.722 363 249 7 35 394 72 420 2.41e-30 122
Msa1353120 AT1G79820.4 26.074 349 245 5 36 383 97 433 2.88e-30 122
Msa1353120 AT1G67300.4 25.225 333 234 6 44 373 102 422 4.25e-30 122
Msa1353120 AT1G67300.5 25.225 333 234 6 44 373 102 422 4.25e-30 122
Msa1353120 AT1G54730.5 26.303 403 261 9 35 435 72 440 7.29e-28 115
Msa1353120 AT4G04760.2 26.942 412 268 8 35 435 71 460 8.46e-28 116
Msa1353120 AT3G05155.2 30.258 271 176 5 35 304 67 325 9.38e-27 110
Msa1353120 AT5G27360.4 27.219 338 231 6 37 372 77 401 1.20e-26 112
Msa1353120 AT1G54730.9 26.608 342 234 7 35 373 72 399 1.48e-25 108
Msa1353120 AT1G54730.7 26.608 342 234 7 35 373 72 399 1.48e-25 108
Msa1353120 AT3G20460.1 26.150 413 270 11 35 435 93 482 1.01e-24 107
Msa1353120 AT1G54730.11 28.309 272 183 4 35 304 72 333 1.24e-24 105
Msa1353120 AT2G48020.4 27.425 299 205 4 35 331 68 356 1.52e-24 105
Msa1353120 AT1G54730.4 25.414 362 234 9 35 394 72 399 5.98e-24 104
Msa1353120 AT2G48020.3 28.676 272 182 4 35 304 68 329 1.24e-22 99.4
Msa1353120 AT1G54730.10 27.126 247 171 3 35 279 72 311 1.13e-21 96.3
Msa1353120 AT1G54730.6 27.126 247 171 3 35 279 72 311 1.13e-21 96.3
Msa1353120 AT1G54730.8 27.236 246 170 3 35 278 72 310 4.80e-21 95.5
Msa1353120 AT1G79820.3 23.951 405 240 8 36 435 97 438 1.65e-20 94.4
Msa1353120 AT5G17010.2 25.721 416 218 16 38 438 99 438 7.19e-19 89.4
Msa1353120 AT1G79820.5 24.309 362 206 8 79 435 78 376 1.85e-17 84.7
Msa1353120 AT3G51490.1 29.508 183 126 3 40 221 52 232 1.96e-17 85.9
Msa1353120 AT3G51490.3 29.508 183 126 3 40 221 2 182 1.99e-17 85.9
Msa1353120 AT3G51490.3 26.230 244 151 6 212 437 436 668 2.40e-14 76.3
Msa1353120 AT3G51490.2 29.508 183 126 3 40 221 52 232 2.14e-17 85.9
Msa1353120 AT3G51490.2 26.230 244 151 6 212 437 486 718 2.12e-14 76.3
Msa1353120 AT4G35300.9 31.481 162 109 2 59 219 70 230 6.11e-16 81.3
Msa1353120 AT4G35300.2 31.481 162 109 2 59 219 70 230 6.11e-16 81.3
Msa1353120 AT4G35300.3 31.481 162 109 2 59 219 70 230 6.11e-16 81.3
Msa1353120 AT4G35300.4 31.481 162 109 2 59 219 70 230 6.34e-16 81.3
Msa1353120 AT4G35300.8 31.481 162 109 2 59 219 70 230 6.34e-16 81.3
Msa1353120 AT4G35300.6 31.481 162 109 2 59 219 70 230 6.34e-16 81.3
Msa1353120 AT4G35300.11 31.481 162 109 2 59 219 70 230 6.34e-16 81.3
Msa1353120 AT4G35300.1 31.481 162 109 2 59 219 70 230 6.34e-16 81.3
Msa1353120 AT4G35300.10 31.481 162 109 2 59 219 70 230 6.34e-16 81.3
Msa1353120 AT4G35300.7 31.481 162 109 2 59 219 70 230 6.34e-16 81.3
Msa1353120 AT1G20840.2 31.500 200 126 5 29 219 31 228 1.15e-15 80.5
Msa1353120 AT1G20840.2 28.070 228 135 10 227 437 502 717 9.51e-11 64.7
Msa1353120 AT1G20840.1 31.500 200 126 5 29 219 31 228 1.15e-15 80.5
Msa1353120 AT1G20840.1 28.070 228 135 10 227 437 502 717 9.51e-11 64.7

Find 117 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTATTCAGCTGTGATTAC+TGG 0.172982 tig0013073:-42637 Msa1353120:CDS
AATTCCCAGTTGTAAATTCT+TGG 0.207115 tig0013073:-42019 Msa1353120:exon
TTTGCTAACCTTGTCAATTA+TGG 0.208906 tig0013073:-43833 Msa1353120:CDS
GTCTGCCTTCGCTTGGTCTT+GGG 0.222884 tig0013073:-42410 Msa1353120:CDS
TTGTGATCATGCAGAATTTC+AGG 0.239240 tig0013073:-43170 Msa1353120:intron
CTCTCTGTCATTTCTTCAAT+TGG 0.240872 tig0013073:+42163 None:intergenic
CAACATTGAACCCGAGTTCT+TGG 0.266059 tig0013073:-42991 Msa1353120:CDS
AAGAAATGACAGAGAGAGTA+TGG 0.268699 tig0013073:-42156 Msa1353120:CDS
TGTCTGCCTTCGCTTGGTCT+TGG 0.278420 tig0013073:-42411 Msa1353120:CDS
GGAAACAATAATAATATATA+TGG 0.281507 tig0013073:-41818 Msa1353120:three_prime_UTR
AATACTCATTTGGTATTTAC+CGG 0.282234 tig0013073:+41992 None:intergenic
GTTGTAAATTCTTGGAATTC+CGG 0.291403 tig0013073:-42011 Msa1353120:exon
TCTTCTTGTTCTTCTCTGGC+TGG 0.298249 tig0013073:-42240 Msa1353120:CDS
GGAATCTTCTTGTTCTTCTC+TGG 0.310304 tig0013073:-42244 Msa1353120:CDS
ATGTTATGCAACTTCAAGTT+TGG 0.312039 tig0013073:-42265 Msa1353120:CDS
CGTTTGAGAAGATTCCTAAA+AGG 0.325463 tig0013073:+42927 None:intergenic
GTCGTGATAGCAATCATTCT+TGG 0.343617 tig0013073:-42511 Msa1353120:CDS
TCCTATACAACTCGTACATT+GGG 0.361220 tig0013073:-45085 Msa1353120:CDS
TTGGAGACTATCTCTTGGTT+TGG 0.361405 tig0013073:-43138 Msa1353120:CDS
TTCCATAGACAAAATTTGTA+TGG 0.364591 tig0013073:+41837 None:intergenic
TTGGTTCTGGAAGAGGTTTA+TGG 0.367480 tig0013073:-42125 Msa1353120:CDS
AGAATTTACAACTGGGAATT+CGG 0.368074 tig0013073:+42022 None:intergenic
GAATTCCAAGAATTTACAAC+TGG 0.377660 tig0013073:+42014 None:intergenic
TATGGAAGCAACATTGGTTC+TGG 0.378484 tig0013073:-42138 Msa1353120:CDS
AGACTCACCATGTTGATTGC+TGG 0.383024 tig0013073:-45058 Msa1353120:CDS
AGTTAATGCAGCTAGGTATA+AGG 0.385835 tig0013073:+45123 None:intergenic
CTTTCGTGTCTGCCTTCGCT+TGG 0.391512 tig0013073:-42417 Msa1353120:CDS
CCTCGCTCAATGAGACTGTT+GGG 0.394071 tig0013073:+43062 None:intergenic
CTTCTTGTTCTTCTCTGGCT+GGG 0.396680 tig0013073:-42239 Msa1353120:CDS
ATTGGTATGTTCTTCGTCTC+AGG 0.397276 tig0013073:+42181 None:intergenic
GTTCACCTTTGTCATTGCTC+AGG 0.398780 tig0013073:-42299 Msa1353120:CDS
CCATGAGTGCACCCACTGTT+AGG 0.399601 tig0013073:+43096 None:intergenic
AACCTTGCCATGCTCATTGT+TGG 0.400156 tig0013073:-44992 Msa1353120:CDS
GCAATTTCTGAGAGGAAAAC+TGG 0.403356 tig0013073:+43920 None:intergenic
ATCTTACTTGGTTGTGGTGT+TGG 0.408209 tig0013073:-44965 Msa1353120:CDS
AGACTATCTCTTGGTTTGGC+TGG 0.409374 tig0013073:-43134 Msa1353120:CDS
CCTAACAGTGGGTGCACTCA+TGG 0.419887 tig0013073:-43096 Msa1353120:CDS
ATCCTATACAACTCGTACAT+TGG 0.422729 tig0013073:-45086 Msa1353120:CDS
AGCAACATTGGTTCTGGAAG+AGG 0.429089 tig0013073:-42132 Msa1353120:CDS
CGTTGATGCCGGTGAATTGT+TGG 0.432613 tig0013073:+42719 None:intergenic
TAGAGACTAAAATACTCATT+TGG 0.435991 tig0013073:+41982 None:intergenic
CCCCAATGTACGAGTTGTAT+AGG 0.437683 tig0013073:+45084 None:intergenic
ACTGTCTTTCTGTATACTGC+TGG 0.441904 tig0013073:+45214 None:intergenic
GGCAGAATCTTACTTGGTTG+TGG 0.448889 tig0013073:-44971 Msa1353120:CDS
TGGGGTTGGAGACTATCTCT+TGG 0.452302 tig0013073:-43143 Msa1353120:CDS
GGAGCTTTGTGAGGCAAGTC+GGG 0.455707 tig0013073:-42970 Msa1353120:CDS
AAAGCTCCACGAATTCTTGA+AGG 0.464569 tig0013073:+43896 None:intergenic
CCCACTGTTAGGAGAAGTGC+TGG 0.467123 tig0013073:+43107 None:intergenic
GGTCTTGGGGTCCTCTCGGT+TGG 0.470775 tig0013073:-42396 Msa1353120:CDS
ATTGTTGGCAGAATCTTACT+TGG 0.471393 tig0013073:-44977 Msa1353120:CDS
CAGTAATCACAGCTGAATAG+AGG 0.471861 tig0013073:+42638 None:intergenic
TCCAGCTCAATGTCACCATT+GGG 0.476689 tig0013073:-43862 Msa1353120:CDS
TTCCAGCTCAATGTCACCAT+TGG 0.476773 tig0013073:-43863 Msa1353120:CDS
ACCTCGCTCAATGAGACTGT+TGG 0.477193 tig0013073:+43061 None:intergenic
AGCAATCATTCTTGGGATCA+AGG 0.479075 tig0013073:-42503 Msa1353120:CDS
TGAAAGATCGTCGGAATGAT+CGG 0.481000 tig0013073:+42477 None:intergenic
CATGCAGAATTTCAGGTGGA+TGG 0.482057 tig0013073:-43163 Msa1353120:intron
CTCACAAAGCTCCAAGAACT+CGG 0.482140 tig0013073:+42980 None:intergenic
TCTGCCTTCGCTTGGTCTTG+GGG 0.483271 tig0013073:-42409 Msa1353120:CDS
GAATTTCAGGTGGATGGGGT+TGG 0.483636 tig0013073:-43157 Msa1353120:CDS
TGGAGCTTTGTGAGGCAAGT+CGG 0.484225 tig0013073:-42971 Msa1353120:CDS
AAACATGATCGCGTTGATGC+CGG 0.485208 tig0013073:+42708 None:intergenic
GTTTGAGAAGATTCCTAAAA+GGG 0.487028 tig0013073:+42928 None:intergenic
TCGTGATAGCAATCATTCTT+GGG 0.491265 tig0013073:-42510 Msa1353120:CDS
GCTTGGTCTTGGGGTCCTCT+CGG 0.491457 tig0013073:-42400 Msa1353120:CDS
AGTTTAATTTAAGCTATACA+TGG 0.495407 tig0013073:-41913 Msa1353120:three_prime_UTR
TACTGCAAATATGATAATCA+AGG 0.498116 tig0013073:-45166 Msa1353120:CDS
ATGCAGAATTTCAGGTGGAT+GGG 0.500388 tig0013073:-43162 Msa1353120:intron
CATTCCGACGATCTTTCAAA+AGG 0.506626 tig0013073:-42472 Msa1353120:CDS
GGCAAGTCGGGTTGCTAAAG+AGG 0.509254 tig0013073:-42958 Msa1353120:CDS
CCACTCGAGACTCGATCAGC+TGG 0.513496 tig0013073:-42352 Msa1353120:CDS
TGCAGAATTTCAGGTGGATG+GGG 0.517632 tig0013073:-43161 Msa1353120:intron
TCCCAATGGTGACATTGAGC+TGG 0.520153 tig0013073:+43861 None:intergenic
TACTTGTAATGCGATGGAAA+TGG 0.527060 tig0013073:+42884 None:intergenic
CTCGCTCAATGAGACTGTTG+GGG 0.532113 tig0013073:+43063 None:intergenic
AGAAAGACAGTGTTAGAGAC+AGG 0.534172 tig0013073:-45202 Msa1353120:CDS
GAGCGAGGTCGCATTGAAGA+AGG 0.548063 tig0013073:-43047 Msa1353120:CDS
AGAGAGTATGGAAGCAACAT+TGG 0.551108 tig0013073:-42144 Msa1353120:CDS
TCGAGTGGAAATGTCTCACT+TGG 0.551130 tig0013073:+42367 None:intergenic
CGAGTTCTTGGAGCTTTGTG+AGG 0.551421 tig0013073:-42979 Msa1353120:CDS
ATCTACTCAGTCGATAAACT+TGG 0.551896 tig0013073:-42583 Msa1353120:CDS
CGTATGTTGCTGTTGGAAGC+CGG 0.555363 tig0013073:-42556 Msa1353120:CDS
TGGTCGTCGTATGTTGCTGT+TGG 0.558566 tig0013073:-42563 Msa1353120:CDS
ATTGCACCTTCAAGAATTCG+TGG 0.560498 tig0013073:-43902 Msa1353120:CDS
AGTACTTACTTGTAATGCGA+TGG 0.565746 tig0013073:+42878 None:intergenic
ACAAAGAAGAAACAGGGAAG+AGG 0.571061 tig0013073:+41872 None:intergenic
CCAGTGTTGTTCAATACAGT+GGG 0.572265 tig0013073:-42679 Msa1353120:CDS
CTGTCTTTCTGTATACTGCT+GGG 0.578586 tig0013073:+45215 None:intergenic
AGTAATCACAGCTGAATAGA+GGG 0.588357 tig0013073:+42639 None:intergenic
AGTGGGTGCACTCATGGTTG+TGG 0.597960 tig0013073:-43090 Msa1353120:CDS
TGCCAACAATGAGCATGGCA+AGG 0.598518 tig0013073:+44990 None:intergenic
TCACAAAGCTCCAAGAACTC+GGG 0.610273 tig0013073:+42981 None:intergenic
AGACAAGAACATTTGTACAC+CGG 0.613737 tig0013073:+42537 None:intergenic
CAGGTATTCCAACAATTCAC+CGG 0.614955 tig0013073:-42727 Msa1353120:CDS
CCAGCTGATCGAGTCTCGAG+TGG 0.616370 tig0013073:+42352 None:intergenic
CCCACTGTATTGAACAACAC+TGG 0.617307 tig0013073:+42679 None:intergenic
ACCAGTGTTGTTCAATACAG+TGG 0.620613 tig0013073:-42680 Msa1353120:CDS
TGTTAGTGCCATAATTGACA+AGG 0.626375 tig0013073:+43825 None:intergenic
GATTCTGCCAACAATGAGCA+TGG 0.628326 tig0013073:+44985 None:intergenic
CCAGCACTTCTCCTAACAGT+GGG 0.629032 tig0013073:-43107 Msa1353120:CDS
AGGACCCCAAGACCAAGCGA+AGG 0.640865 tig0013073:+42405 None:intergenic
TTGAAGGTGCAATTTCTGAG+AGG 0.640916 tig0013073:+43912 None:intergenic
TGGAAATGGTAAGTTGAGGT+CGG 0.643846 tig0013073:+42898 None:intergenic
CCCAGCACTTCTCCTAACAG+TGG 0.646885 tig0013073:-43108 Msa1353120:CDS
TGATCATGCAGAATTTCAGG+TGG 0.654493 tig0013073:-43167 Msa1353120:intron
CCTATACAACTCGTACATTG+GGG 0.657216 tig0013073:-45084 Msa1353120:CDS
GTTAGCAAACAAAATCCCAA+TGG 0.659156 tig0013073:+43847 None:intergenic
AAAAGCCTGAGCAATGACAA+AGG 0.659672 tig0013073:+42294 None:intergenic
GCGATGGAAATGGTAAGTTG+AGG 0.663464 tig0013073:+42894 None:intergenic
CCCAACAGTCTCATTGAGCG+AGG 0.665093 tig0013073:-43062 Msa1353120:CDS
AATTCCAAGAATTTACAACT+GGG 0.665521 tig0013073:+42015 None:intergenic
AAGTTGAAGTTAATGCAGCT+AGG 0.666109 tig0013073:+45116 None:intergenic
TGAGTAGATAGACACAATTG+TGG 0.671515 tig0013073:+42597 None:intergenic
AGATAGACACAATTGTGGAG+AGG 0.673901 tig0013073:+42602 None:intergenic
TCGCTCAATGAGACTGTTGG+GGG 0.680548 tig0013073:+43064 None:intergenic
CCACTGTTAGGAGAAGTGCT+GGG 0.708624 tig0013073:+43108 None:intergenic
CTTGGAATAAGCCAACCGAG+AGG 0.779255 tig0013073:+42385 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATAATAATAATAA+TGG - tig0013073:44981-45000 Msa1353120:CDS 0.0%
!!! ATATAAAATCAACAAAATTT+TGG - tig0013073:43380-43399 Msa1353120:intron 10.0%
!!! TTATTATTATTTTTGATCTT+AGG + tig0013073:44975-44994 None:intergenic 10.0%
!!! CTATATAACATATTTTATTG+TGG - tig0013073:42475-42494 Msa1353120:CDS 15.0%
!!! AATTATTTTTAGTTTGAACT+TGG - tig0013073:42525-42544 Msa1353120:CDS 15.0%
!!! ATTATTTTTAGTTTGAACTT+GGG - tig0013073:42526-42545 Msa1353120:CDS 15.0%
!! TATGAAAAGAATCAAAATTA+AGG + tig0013073:42897-42916 None:intergenic 15.0%
!!! GTATCTTACTAAATTATTTT+TGG - tig0013073:43070-43089 Msa1353120:CDS 15.0%
!!! ATTTTTGGTTAATTTATCAT+AGG - tig0013073:43085-43104 Msa1353120:CDS 15.0%
!!! GACTTTTAGTTATTAATTTA+TGG + tig0013073:43427-43446 None:intergenic 15.0%
!!! AAAAAATATGTTACTTTCAA+GGG + tig0013073:43615-43634 None:intergenic 15.0%
!!! TAAAAAATATGTTACTTTCA+AGG + tig0013073:43616-43635 None:intergenic 15.0%
!!! ATAAAATCAATCAAGAATTT+TGG - tig0013073:43708-43727 Msa1353120:intron 15.0%
!!! GTTACTTGATAATTTTATTT+TGG - tig0013073:43744-43763 Msa1353120:intron 15.0%
!! GGAAACAATAATAATATATA+TGG - tig0013073:45215-45234 Msa1353120:CDS 15.0%
!!! TATTTTTTCAGATTAATGTT+TGG - tig0013073:45240-45259 Msa1353120:CDS 15.0%
!! TATACTTTGATTATATACGT+CGG + tig0013073:42434-42453 None:intergenic 20.0%
!! AAAAACATAGAACAAAATAG+AGG + tig0013073:42655-42674 None:intergenic 20.0%
!! TCAAAACTCATTTCAAAATT+TGG + tig0013073:42749-42768 None:intergenic 20.0%
!!! AGGTGTATCAATTTTATTTT+TGG - tig0013073:43043-43062 Msa1353120:CDS 20.0%
!! TAGTAAGCAAATTGAATTAA+TGG - tig0013073:43318-43337 Msa1353120:intron 20.0%
!!! TTATTATCAATCAAAGTATC+TGG + tig0013073:43685-43704 None:intergenic 20.0%
!!! TGCAATTTTTGTTGTTATAT+TGG - tig0013073:44587-44606 Msa1353120:intron 20.0%
!!! AGTTTAATTTAAGCTATACA+TGG - tig0013073:45120-45139 Msa1353120:CDS 20.0%
! TACTGCAAATATGATAATCA+AGG - tig0013073:41867-41886 Msa1353120:three_prime_UTR 25.0%
! GGACTCAAAATAAAAATACA+TGG + tig0013073:42576-42595 None:intergenic 25.0%
! AATTGAGTTCTCATTCTAAA+TGG + tig0013073:42714-42733 None:intergenic 25.0%
! GCAAAAAATAGAATTTGTGA+AGG + tig0013073:42840-42859 None:intergenic 25.0%
! GACATTAGTGTCTAATTATA+AGG - tig0013073:43023-43042 Msa1353120:CDS 25.0%
!!! CTATATCTAACAATTTTGAC+CGG + tig0013073:43357-43376 None:intergenic 25.0%
!!! TCCATTTTTTTAGTCTACAA+GGG - tig0013073:43506-43525 Msa1353120:intron 25.0%
! AATTCCAAGAATTTACAACT+GGG + tig0013073:45021-45040 None:intergenic 25.0%
! AATACTCATTTGGTATTTAC+CGG + tig0013073:45044-45063 None:intergenic 25.0%
! TAGAGACTAAAATACTCATT+TGG + tig0013073:45054-45073 None:intergenic 25.0%
!!! CTATGCAAGTTATTTTGTTT+TGG - tig0013073:45093-45112 Msa1353120:CDS 25.0%
!! TTCCATACAAATTTTGTCTA+TGG - tig0013073:45194-45213 Msa1353120:CDS 25.0%
! TTCCATAGACAAAATTTGTA+TGG + tig0013073:45199-45218 None:intergenic 25.0%
GGAAAAACTTCTTCAGAAAT+GGG + tig0013073:41800-41819 None:intergenic 30.0%
!!! ATTGCTGGTTTTTTCTTCAT+TGG - tig0013073:41990-42009 Msa1353120:three_prime_UTR 30.0%
AAAATGGATGATAAGGACTT+TGG + tig0013073:42602-42621 None:intergenic 30.0%
TTGGAGAAAAATGGATGATA+AGG + tig0013073:42609-42628 None:intergenic 30.0%
!! CCAAAAGTATTGGAGAAAAA+TGG + tig0013073:42618-42637 None:intergenic 30.0%
!! CCATTTTTCTCCAATACTTT+TGG - tig0013073:42615-42634 Msa1353120:CDS 30.0%
AAAATAGAGGTCTACATCAA+TGG + tig0013073:42642-42661 None:intergenic 30.0%
TTAAACAAAGAGTTCTGCAT+TGG - tig0013073:42794-42813 Msa1353120:intron 30.0%
TTTGCTAACCTTGTCAATTA+TGG - tig0013073:43200-43219 Msa1353120:intron 30.0%
ACACAGTTGAAGAAAAAAAG+AGG + tig0013073:43260-43279 None:intergenic 30.0%
TTGAATTAATGGTTAGTGTG+TGG - tig0013073:43329-43348 Msa1353120:intron 30.0%
!!! GTCCATTTTTTTAGTCTACA+AGG - tig0013073:43505-43524 Msa1353120:intron 30.0%
ACCCTTGTAGACTAAAAAAA+TGG + tig0013073:43510-43529 None:intergenic 30.0%
CTTCAACAAATATCTACAAG+AGG + tig0013073:43645-43664 None:intergenic 30.0%
! CTCTTGTAGATATTTGTTGA+AGG - tig0013073:43643-43662 Msa1353120:intron 30.0%
GTTTGAGAAGATTCCTAAAA+GGG + tig0013073:44108-44127 None:intergenic 30.0%
TCATTTGTTTGTTCAAACAC+AGG - tig0013073:44287-44306 Msa1353120:intron 30.0%
! ATGTTATGCAACTTCAAGTT+TGG - tig0013073:44768-44787 Msa1353120:intron 30.0%
AGAATTTACAACTGGGAATT+CGG + tig0013073:45014-45033 None:intergenic 30.0%
AATTCCCAGTTGTAAATTCT+TGG - tig0013073:45014-45033 Msa1353120:CDS 30.0%
GAATTCCAAGAATTTACAAC+TGG + tig0013073:45022-45041 None:intergenic 30.0%
GTTGTAAATTCTTGGAATTC+CGG - tig0013073:45022-45041 Msa1353120:CDS 30.0%
! CTTTTCACAAAGAAGAAACA+GGG + tig0013073:45170-45189 None:intergenic 30.0%
! ACTTTTCACAAAGAAGAAAC+AGG + tig0013073:45171-45190 None:intergenic 30.0%
GGGAAAAACTTCTTCAGAAA+TGG + tig0013073:41801-41820 None:intergenic 35.0%
AGTTAATGCAGCTAGGTATA+AGG + tig0013073:41913-41932 None:intergenic 35.0%
AAGTTGAAGTTAATGCAGCT+AGG + tig0013073:41920-41939 None:intergenic 35.0%
ATCCTATACAACTCGTACAT+TGG - tig0013073:41947-41966 Msa1353120:three_prime_UTR 35.0%
TCCTATACAACTCGTACATT+GGG - tig0013073:41948-41967 Msa1353120:three_prime_UTR 35.0%
GAAAAAACCAGCAATCAACA+TGG + tig0013073:41985-42004 None:intergenic 35.0%
ATTGTTGGCAGAATCTTACT+TGG - tig0013073:42056-42075 Msa1353120:CDS 35.0%
CTTCATGAACATGCTAATGT+CGG - tig0013073:42310-42329 Msa1353120:CDS 35.0%
! CATCAATGGACCAAAAGTAT+TGG + tig0013073:42628-42647 None:intergenic 35.0%
!!! TTTTGTCATCACTTGTTGTG+TGG - tig0013073:42870-42889 Msa1353120:intron 35.0%
ACACATATAGTAACGTAACG+TGG - tig0013073:42916-42935 Msa1353120:CDS 35.0%
CTATGTACGTACGTGTAATT+TGG + tig0013073:42949-42968 None:intergenic 35.0%
AATTACACGTACGTACATAG+TGG - tig0013073:42949-42968 Msa1353120:CDS 35.0%
GTTAGCAAACAAAATCCCAA+TGG + tig0013073:43189-43208 None:intergenic 35.0%
TGTTAGTGCCATAATTGACA+AGG + tig0013073:43211-43230 None:intergenic 35.0%
CTAAAAGTCTAGCACATGTT+TGG - tig0013073:43438-43457 Msa1353120:intron 35.0%
ACAAATATCTACAAGAGGTG+TGG + tig0013073:43640-43659 None:intergenic 35.0%
TTGTGATCATGCAGAATTTC+AGG - tig0013073:43863-43882 Msa1353120:CDS 35.0%
GCTGTACTTAAAAAGATTCG+CGG - tig0013073:44013-44032 Msa1353120:intron 35.0%
CGTTTGAGAAGATTCCTAAA+AGG + tig0013073:44109-44128 None:intergenic 35.0%
TACTTGTAATGCGATGGAAA+TGG + tig0013073:44152-44171 None:intergenic 35.0%
AGTACTTACTTGTAATGCGA+TGG + tig0013073:44158-44177 None:intergenic 35.0%
AGTAATCACAGCTGAATAGA+GGG + tig0013073:44397-44416 None:intergenic 35.0%
TGAGTAGATAGACACAATTG+TGG + tig0013073:44439-44458 None:intergenic 35.0%
ATCTACTCAGTCGATAAACT+TGG - tig0013073:44450-44469 Msa1353120:intron 35.0%
AGACAAGAACATTTGTACAC+CGG + tig0013073:44499-44518 None:intergenic 35.0%
TCGTGATAGCAATCATTCTT+GGG - tig0013073:44523-44542 Msa1353120:intron 35.0%
!! ATAGCCTTTTGAAAGATCGT+CGG + tig0013073:44568-44587 None:intergenic 35.0%
! GTCAATCTTTGTGCTTTTCT+TGG - tig0013073:44827-44846 Msa1353120:intron 35.0%
! CTCTCTGTCATTTCTTCAAT+TGG + tig0013073:44873-44892 None:intergenic 35.0%
AAGAAATGACAGAGAGAGTA+TGG - tig0013073:44877-44896 Msa1353120:intron 35.0%
CTGTCTTTCTGTATACTGCT+GGG + tig0013073:41821-41840 None:intergenic 40.0%
ACTGTCTTTCTGTATACTGC+TGG + tig0013073:41822-41841 None:intergenic 40.0%
AGAAAGACAGTGTTAGAGAC+AGG - tig0013073:41831-41850 Msa1353120:three_prime_UTR 40.0%
CCTATACAACTCGTACATTG+GGG - tig0013073:41949-41968 Msa1353120:three_prime_UTR 40.0%
!!! GCTGGTTTTTTCTTCATTGG+TGG - tig0013073:41993-42012 Msa1353120:three_prime_UTR 40.0%
ATCTTACTTGGTTGTGGTGT+TGG - tig0013073:42068-42087 Msa1353120:CDS 40.0%
!!! TGGTGTTGGTTTTGCTAATC+AGG - tig0013073:42082-42101 Msa1353120:CDS 40.0%
CACAGTTGCTCTTAGTCATT+AGG - tig0013073:42210-42229 Msa1353120:CDS 40.0%
TTTGATATAGACGCACGCAA+TGG + tig0013073:42393-42412 None:intergenic 40.0%
! GGATGATAAGGACTTTGGAA+TGG + tig0013073:42597-42616 None:intergenic 40.0%
! GCAATTTCTGAGAGGAAAAC+TGG + tig0013073:43116-43135 None:intergenic 40.0%
! TTGAAGGTGCAATTTCTGAG+AGG + tig0013073:43124-43143 None:intergenic 40.0%
ATTGCACCTTCAAGAATTCG+TGG - tig0013073:43131-43150 Msa1353120:CDS 40.0%
AAAGCTCCACGAATTCTTGA+AGG + tig0013073:43140-43159 None:intergenic 40.0%
TACACTTGCCATGTTGTTAG+CGG + tig0013073:43482-43501 None:intergenic 40.0%
TAGTCTACAAGGGTCAACTT+TGG - tig0013073:43516-43535 Msa1353120:intron 40.0%
GTAGACACTTCATACAAACG+TGG - tig0013073:43550-43569 Msa1353120:intron 40.0%
! TCAATCAAAGTATCTGGCAC+TGG + tig0013073:43679-43698 None:intergenic 40.0%
TGATCATGCAGAATTTCAGG+TGG - tig0013073:43866-43885 Msa1353120:CDS 40.0%
! ATGCAGAATTTCAGGTGGAT+GGG - tig0013073:43871-43890 Msa1353120:CDS 40.0%
TTGGAGACTATCTCTTGGTT+TGG - tig0013073:43895-43914 Msa1353120:CDS 40.0%
! TGGAAATGGTAAGTTGAGGT+CGG + tig0013073:44138-44157 None:intergenic 40.0%
CAGGTATTCCAACAATTCAC+CGG - tig0013073:44306-44325 Msa1353120:intron 40.0%
! ACCAGTGTTGTTCAATACAG+TGG - tig0013073:44353-44372 Msa1353120:intron 40.0%
! CCAGTGTTGTTCAATACAGT+GGG - tig0013073:44354-44373 Msa1353120:intron 40.0%
CAGTAATCACAGCTGAATAG+AGG + tig0013073:44398-44417 None:intergenic 40.0%
CTCTATTCAGCTGTGATTAC+TGG - tig0013073:44396-44415 Msa1353120:intron 40.0%
AGATAGACACAATTGTGGAG+AGG + tig0013073:44434-44453 None:intergenic 40.0%
GTCGTGATAGCAATCATTCT+TGG - tig0013073:44522-44541 Msa1353120:intron 40.0%
AGCAATCATTCTTGGGATCA+AGG - tig0013073:44530-44549 Msa1353120:intron 40.0%
TGAAAGATCGTCGGAATGAT+CGG + tig0013073:44559-44578 None:intergenic 40.0%
CATTCCGACGATCTTTCAAA+AGG - tig0013073:44561-44580 Msa1353120:intron 40.0%
AAAAGCCTGAGCAATGACAA+AGG + tig0013073:44742-44761 None:intergenic 40.0%
GGAATCTTCTTGTTCTTCTC+TGG - tig0013073:44789-44808 Msa1353120:intron 40.0%
ATTGGTATGTTCTTCGTCTC+AGG + tig0013073:44855-44874 None:intergenic 40.0%
! AGAGAGTATGGAAGCAACAT+TGG - tig0013073:44889-44908 Msa1353120:intron 40.0%
!! TATGGAAGCAACATTGGTTC+TGG - tig0013073:44895-44914 Msa1353120:intron 40.0%
!! TTGGTTCTGGAAGAGGTTTA+TGG - tig0013073:44908-44927 Msa1353120:intron 40.0%
ACAAAGAAGAAACAGGGAAG+AGG + tig0013073:45164-45183 None:intergenic 40.0%
CCCCAATGTACGAGTTGTAT+AGG + tig0013073:41952-41971 None:intergenic 45.0%
! AGACTCACCATGTTGATTGC+TGG - tig0013073:41975-41994 Msa1353120:three_prime_UTR 45.0%
AACCTTGCCATGCTCATTGT+TGG - tig0013073:42041-42060 Msa1353120:CDS 45.0%
GATTCTGCCAACAATGAGCA+TGG + tig0013073:42051-42070 None:intergenic 45.0%
GGCAGAATCTTACTTGGTTG+TGG - tig0013073:42062-42081 Msa1353120:CDS 45.0%
TTCCAGCTCAATGTCACCAT+TGG - tig0013073:43170-43189 Msa1353120:intron 45.0%
TCCAGCTCAATGTCACCATT+GGG - tig0013073:43171-43190 Msa1353120:intron 45.0%
TAATGGTTAGTGTGTGGTGC+CGG - tig0013073:43335-43354 Msa1353120:intron 45.0%
TGTGTTCTCCGCTAACAACA+TGG - tig0013073:43471-43490 Msa1353120:intron 45.0%
TCTACAAGGGTCAACTTTGG+TGG - tig0013073:43519-43538 Msa1353120:intron 45.0%
! TATCTGGCACTGGACTATGT+GGG + tig0013073:43669-43688 None:intergenic 45.0%
! CATGCAGAATTTCAGGTGGA+TGG - tig0013073:43870-43889 Msa1353120:CDS 45.0%
! TGCAGAATTTCAGGTGGATG+GGG - tig0013073:43872-43891 Msa1353120:CDS 45.0%
!! AGACTATCTCTTGGTTTGGC+TGG - tig0013073:43899-43918 Msa1353120:CDS 45.0%
CAACATTGAACCCGAGTTCT+TGG - tig0013073:44042-44061 Msa1353120:intron 45.0%
TCACAAAGCTCCAAGAACTC+GGG + tig0013073:44055-44074 None:intergenic 45.0%
CTCACAAAGCTCCAAGAACT+CGG + tig0013073:44056-44075 None:intergenic 45.0%
! AAGAGGTCAAGCACCCTTTT+AGG - tig0013073:44092-44111 Msa1353120:intron 45.0%
GCGATGGAAATGGTAAGTTG+AGG + tig0013073:44142-44161 None:intergenic 45.0%
! AAACATGATCGCGTTGATGC+CGG + tig0013073:44328-44347 None:intergenic 45.0%
CCCACTGTATTGAACAACAC+TGG + tig0013073:44357-44376 None:intergenic 45.0%
TCGAGTGGAAATGTCTCACT+TGG + tig0013073:44669-44688 None:intergenic 45.0%
GTTCACCTTTGTCATTGCTC+AGG - tig0013073:44734-44753 Msa1353120:intron 45.0%
TCTTCTTGTTCTTCTCTGGC+TGG - tig0013073:44793-44812 Msa1353120:intron 45.0%
CTTCTTGTTCTTCTCTGGCT+GGG - tig0013073:44794-44813 Msa1353120:intron 45.0%
!! AGCAACATTGGTTCTGGAAG+AGG - tig0013073:44901-44920 Msa1353120:intron 45.0%
TGCCAACAATGAGCATGGCA+AGG + tig0013073:42046-42065 None:intergenic 50.0%
TCCCAATGGTGACATTGAGC+TGG + tig0013073:43175-43194 None:intergenic 50.0%
! GTATCTGGCACTGGACTATG+TGG + tig0013073:43670-43689 None:intergenic 50.0%
! GAATTTCAGGTGGATGGGGT+TGG - tig0013073:43876-43895 Msa1353120:CDS 50.0%
TGGGGTTGGAGACTATCTCT+TGG - tig0013073:43890-43909 Msa1353120:CDS 50.0%
!! CCACTGTTAGGAGAAGTGCT+GGG + tig0013073:43928-43947 None:intergenic 50.0%
CCAGCACTTCTCCTAACAGT+GGG - tig0013073:43926-43945 Msa1353120:CDS 50.0%
TCGCTCAATGAGACTGTTGG+GGG + tig0013073:43972-43991 None:intergenic 50.0%
CTCGCTCAATGAGACTGTTG+GGG + tig0013073:43973-43992 None:intergenic 50.0%
CCTCGCTCAATGAGACTGTT+GGG + tig0013073:43974-43993 None:intergenic 50.0%
ACCTCGCTCAATGAGACTGT+TGG + tig0013073:43975-43994 None:intergenic 50.0%
! CGAGTTCTTGGAGCTTTGTG+AGG - tig0013073:44054-44073 Msa1353120:intron 50.0%
! TGGAGCTTTGTGAGGCAAGT+CGG - tig0013073:44062-44081 Msa1353120:intron 50.0%
CGTTGATGCCGGTGAATTGT+TGG + tig0013073:44317-44336 None:intergenic 50.0%
TGGTCGTCGTATGTTGCTGT+TGG - tig0013073:44470-44489 Msa1353120:intron 50.0%
! CGTATGTTGCTGTTGGAAGC+CGG - tig0013073:44477-44496 Msa1353120:intron 50.0%
CTTGGAATAAGCCAACCGAG+AGG + tig0013073:44651-44670 None:intergenic 50.0%
CCCAGCACTTCTCCTAACAG+TGG - tig0013073:43925-43944 Msa1353120:CDS 55.0%
! CCCACTGTTAGGAGAAGTGC+TGG + tig0013073:43929-43948 None:intergenic 55.0%
CCATGAGTGCACCCACTGTT+AGG + tig0013073:43940-43959 None:intergenic 55.0%
CCTAACAGTGGGTGCACTCA+TGG - tig0013073:43937-43956 Msa1353120:intron 55.0%
AGTGGGTGCACTCATGGTTG+TGG - tig0013073:43943-43962 Msa1353120:intron 55.0%
CCCAACAGTCTCATTGAGCG+AGG - tig0013073:43971-43990 Msa1353120:intron 55.0%
GAGCGAGGTCGCATTGAAGA+AGG - tig0013073:43986-44005 Msa1353120:intron 55.0%
! GGAGCTTTGTGAGGCAAGTC+GGG - tig0013073:44063-44082 Msa1353120:intron 55.0%
! GGCAAGTCGGGTTGCTAAAG+AGG - tig0013073:44075-44094 Msa1353120:intron 55.0%
CTTTCGTGTCTGCCTTCGCT+TGG - tig0013073:44616-44635 Msa1353120:intron 55.0%
TGTCTGCCTTCGCTTGGTCT+TGG - tig0013073:44622-44641 Msa1353120:intron 55.0%
! GTCTGCCTTCGCTTGGTCTT+GGG - tig0013073:44623-44642 Msa1353120:intron 55.0%
!! TCTGCCTTCGCTTGGTCTTG+GGG - tig0013073:44624-44643 Msa1353120:intron 55.0%
AGGACCCCAAGACCAAGCGA+AGG + tig0013073:44631-44650 None:intergenic 60.0%
!! GCTTGGTCTTGGGGTCCTCT+CGG - tig0013073:44633-44652 Msa1353120:intron 60.0%
CCAGCTGATCGAGTCTCGAG+TGG + tig0013073:44684-44703 None:intergenic 60.0%
CCACTCGAGACTCGATCAGC+TGG - tig0013073:44681-44700 Msa1353120:intron 60.0%
GGTCTTGGGGTCCTCTCGGT+TGG - tig0013073:44637-44656 Msa1353120:intron 65.0%
Chromosome Type Strat End Strand Name
tig0013073 gene 41778 45277 41778 ID=Msa1353120;Name=Msa1353120
tig0013073 mRNA 41778 45277 41778 ID=Msa1353120-mRNA-1;Parent=Msa1353120;Name=Msa1353120-mRNA-1;_AED=0.17;_eAED=0.17;_QI=14|0.66|0.5|0.75|1|1|4|249|482
tig0013073 exon 41778 42746 41778 ID=Msa1353120-mRNA-1:exon:8521;Parent=Msa1353120-mRNA-1
tig0013073 exon 42887 43178 42887 ID=Msa1353120-mRNA-1:exon:8520;Parent=Msa1353120-mRNA-1
tig0013073 exon 43824 43948 43824 ID=Msa1353120-mRNA-1:exon:8519;Parent=Msa1353120-mRNA-1
tig0013073 exon 44952 45277 44952 ID=Msa1353120-mRNA-1:exon:8518;Parent=Msa1353120-mRNA-1
tig0013073 five_prime_UTR 45264 45277 45264 ID=Msa1353120-mRNA-1:five_prime_utr;Parent=Msa1353120-mRNA-1
tig0013073 CDS 44952 45263 44952 ID=Msa1353120-mRNA-1:cds;Parent=Msa1353120-mRNA-1
tig0013073 CDS 43824 43948 43824 ID=Msa1353120-mRNA-1:cds;Parent=Msa1353120-mRNA-1
tig0013073 CDS 42887 43178 42887 ID=Msa1353120-mRNA-1:cds;Parent=Msa1353120-mRNA-1
tig0013073 CDS 42027 42746 42027 ID=Msa1353120-mRNA-1:cds;Parent=Msa1353120-mRNA-1
tig0013073 three_prime_UTR 41778 42026 41778 ID=Msa1353120-mRNA-1:three_prime_utr;Parent=Msa1353120-mRNA-1
Gene Sequence

>Msa1353120

ATGCACCCATTTCTGAAGAAGTTTTTCCCAGCAGTATACAGAAAGACAGTGTTAGAGACAGGATTAGATAGTAATTACTGCAAATATGATAATCAAGGATTGCAGTTATTTACATCATCCTTATACCTAGCTGCATTAACTTCAACTTTCTTTGCATCCTATACAACTCGTACATTGGGGAGAAGACTCACCATGTTGATTGCTGGTTTTTTCTTCATTGGTGGAGTTGCTTTCAATGCTGCTGCTCAAAACCTTGCCATGCTCATTGTTGGCAGAATCTTACTTGGTTGTGGTGTTGGTTTTGCTAATCAGGCTGTGCCAGTTTTCCTCTCAGAAATTGCACCTTCAAGAATTCGTGGAGCTTTGAATATACTATTCCAGCTCAATGTCACCATTGGGATTTTGTTTGCTAACCTTGTCAATTATGGCACTAACAAAATTTCAGGTGGATGGGGTTGGAGACTATCTCTTGGTTTGGCTGGTATCCCAGCACTTCTCCTAACAGTGGGTGCACTCATGGTTGTGGACACCCCCAACAGTCTCATTGAGCGAGGTCGCATTGAAGAAGGAAAAGCTGTACTTAAAAAGATTCGCGGCACTGACAACATTGAACCCGAGTTCTTGGAGCTTTGTGAGGCAAGTCGGGTTGCTAAAGAGGTCAAGCACCCTTTTAGGAATCTTCTCAAACGCAAGAACCGACCTCAACTTACCATTTCCATCGCATTACAAGTATTCCAACAATTCACCGGCATCAACGCGATCATGTTTTATGCACCAGTGTTGTTCAATACAGTGGGATTCAAGAATGACGCTTCCCTCTATTCAGCTGTGATTACTGGTGCAGTTAATGTCCTCTCCACAATTGTGTCTATCTACTCAGTCGATAAACTTGGTCGTCGTATGTTGCTGTTGGAAGCCGGTGTACAAATGTTCTTGTCTCAAGTCGTGATAGCAATCATTCTTGGGATCAAGGTGACCGATCATTCCGACGATCTTTCAAAAGGCTATGCAATTTTTGTTGTTATATTGGTATGCACTTTCGTGTCTGCCTTCGCTTGGTCTTGGGGTCCTCTCGGTTGGCTTATTCCAAGTGAGACATTTCCACTCGAGACTCGATCAGCTGGACAAAGTGTCACAGTTTGTGTCAACATGTTGTTCACCTTTGTCATTGCTCAGGCTTTTCTCTCTATGTTATGCAACTTCAAGTTTGGAATCTTCTTGTTCTTCTCTGGCTGGGTTTTGATCATGTCAATCTTTGTGCTTTTCTTGGTGCCTGAGACGAAGAACATACCAATTGAAGAAATGACAGAGAGAGTATGGAAGCAACATTGGTTCTGGAAGAGGTTTATGGAAGATGATTATGACAATGAGAAAGTAGCTAATGCTGATTATCCTAAGATCAAAAATAATAATAATAATAATGGATATGATCCGAATTCCCAGTTGTAA
Protein sequence

>Msa1353120

MHPFLKKFFPAVYRKTVLETGLDSNYCKYDNQGLQLFTSSLYLAALTSTFFASYTTRTLGRRLTMLIAGFFFIGGVAFNAAAQNLAMLIVGRILLGCGVGFANQAVPVFLSEIAPSRIRGALNILFQLNVTIGILFANLVNYGTNKISGGWGWRLSLGLAGIPALLLTVGALMVVDTPNSLIERGRIEEGKAVLKKIRGTDNIEPEFLELCEASRVAKEVKHPFRNLLKRKNRPQLTISIALQVFQQFTGINAIMFYAPVLFNTVGFKNDASLYSAVITGAVNVLSTIVSIYSVDKLGRRMLLLEAGVQMFLSQVVIAIILGIKVTDHSDDLSKGYAIFVVILVCTFVSAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNMLFTFVIAQAFLSMLCNFKFGIFLFFSGWVLIMSIFVLFLVPETKNIPIEEMTERVWKQHWFWKRFMEDDYDNEKVANADYPKIKNNNNNNGYDPNSQL*