AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0807360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807360 MtrunA17_Chr1g0148611 82.716 162 27 1 48 209 2 162 3.21e-92 278
Msa0807360 MtrunA17_Chr8g0363071 80.892 157 30 0 48 204 2 158 1.95e-88 268
Msa0807360 MtrunA17_Chr1g0167871 33.114 456 290 10 2 451 207 653 3.76e-74 248
Msa0807360 MtrunA17_Chr2g0304851 31.436 404 246 10 1 398 5 383 1.99e-61 206
Msa0807360 MtrunA17_Chr6g0474551 72.727 99 27 0 239 337 2 100 5.64e-50 166
Msa0807360 MtrunA17_Chr4g0037231 70.455 88 26 0 155 242 2 89 2.01e-40 144
Msa0807360 MtrunA17_Chr4g0044661 25.909 440 255 10 1 430 7 385 9.71e-40 150
Msa0807360 MtrunA17_Chr7g0231491 37.198 207 123 5 2 205 36 238 1.28e-31 122
Msa0807360 MtrunA17_Chr5g0393521 33.889 180 118 1 249 427 4 183 1.45e-31 123
Msa0807360 MtrunA17_Chr7g0219411 69.444 72 22 0 1 72 1 72 7.63e-28 106
Msa0807360 MtrunA17_Chr5g0417421 34.507 142 93 0 286 427 110 251 1.64e-26 109
Msa0807360 MtrunA17_Chr5g0393531 32.692 208 127 5 1 207 1 196 1.42e-24 101
Msa0807360 MtrunA17_Chr4g0021711 66.176 68 22 1 1 68 1 67 2.51e-22 92.8
Msa0807360 MtrunA17_Chr7g0223511 31.841 201 110 6 12 212 37 210 4.02e-22 95.5
Msa0807360 MtrunA17_Chr5g0420451 29.082 196 123 5 12 207 15 194 2.91e-20 89.4
Msa0807360 MtrunA17_Chr2g0278111 25.253 297 210 6 1 292 1 290 4.80e-19 88.2
Msa0807360 MtrunA17_Chr5g0411141 25.253 297 210 6 1 292 2 291 5.24e-19 88.2
Msa0807360 MtrunA17_Chr5g0421991 32.353 136 86 1 258 387 5 140 1.86e-18 85.9
Msa0807360 MtrunA17_Chr8g0347361 34.839 155 96 4 12 166 24 173 6.45e-18 82.4
Msa0807360 MtrunA17_Chr1g0206481 27.016 248 169 7 19 259 19 261 9.78e-18 84.0
Msa0807360 MtrunA17_Chr6g0462951 32.540 126 83 2 83 207 2 126 2.17e-17 79.0
Msa0807360 MtrunA17_Chr8g0363081 80.952 42 8 0 361 402 56 97 3.22e-17 77.0
Msa0807360 MtrunA17_Chr5g0423441 26.693 251 174 6 1 244 1 248 1.71e-16 79.3
Msa0807360 MtrunA17_Chr1g0171051 22.917 240 149 5 3 209 51 287 6.32e-15 76.3
Msa0807360 MtrunA17_Chr2g0280031 27.830 212 139 5 39 239 23 231 2.59e-14 73.2
Msa0807360 MtrunA17_Chr6g0481111 37.143 140 79 6 1 136 1 135 2.82e-13 67.0
Msa0807360 MtrunA17_Chr5g0421841 26.728 217 143 5 1 208 1 210 1.39e-12 67.0
Msa0807360 MtrunA17_Chr1g0172341 32.353 102 68 1 1 102 3 103 7.97e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807360 AT1G52950.1 22.030 404 294 11 5 395 7 402 1.04e-13 73.9
Msa0807360 AT2G05642.1 20.748 535 326 17 8 498 8 488 3.39e-13 72.4

Find 97 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATCTTCAATTTCCTTAA+AGG 0.087547 5_3:-28241240 None:intergenic
GATTTATATGTTTGGAAAAT+TGG 0.116085 5_3:+28240800 Msa0807360:CDS
ATTCAGATTTAAGTCCTTTA+AGG 0.124794 5_3:+28241226 Msa0807360:CDS
ATGTTTGGAAAATTGGATTT+AGG 0.133650 5_3:+28240807 Msa0807360:CDS
TATATAGACAACCTTGTTAA+TGG 0.170395 5_3:-28243044 None:intergenic
TCCAATTGTTGATAGGTTTA+AGG 0.181449 5_3:+28241828 Msa0807360:CDS
ACCTGCTTGATGCGACATTA+TGG 0.209144 5_3:+28241556 Msa0807360:CDS
AAACATATGGAACTTATTAT+TGG 0.228381 5_3:+28240869 Msa0807360:CDS
CATATGTTTGTTACCATTAC+TGG 0.233489 5_3:-28240855 None:intergenic
TGTTTGGAAAATTGGATTTA+GGG 0.235377 5_3:+28240808 Msa0807360:CDS
GCATGTTGATCATCCGTTTA+AGG 0.248591 5_3:+28241139 Msa0807360:CDS
ATTATGGGATAAATATTCTT+TGG 0.278633 5_3:+28241572 Msa0807360:CDS
CTGTATCAAGGATTTGAAAA+AGG 0.282958 5_3:+28240778 Msa0807360:CDS
AAGTAAATTGTCTAAATGTT+TGG 0.295647 5_3:-28243416 None:intergenic
CCTTGAAGGCTTTGGACATT+TGG 0.297765 5_3:-28242973 None:intergenic
AGTAAATTGTCTAAATGTTT+GGG 0.325835 5_3:-28243415 None:intergenic
CCATTTGACCTTGAAGGCTT+TGG 0.331312 5_3:-28242981 None:intergenic
AGCCGAATGTTTGTAACAAT+TGG 0.336653 5_3:+28241773 Msa0807360:CDS
AAGGAATGTCTTCAGATTCT+TGG 0.338819 5_3:+28243229 Msa0807360:CDS
ATCGTAAAGACGTCGGTGTT+TGG 0.341508 5_3:+28241399 Msa0807360:CDS
AGGACTTAAATCTGAATTCA+TGG 0.346606 5_3:-28241220 None:intergenic
ATAAATCGGACTTTGTGTTT+TGG 0.350479 5_3:+28243203 Msa0807360:CDS
CCAGCACCATTTGACCTTGA+AGG 0.362700 5_3:-28242987 None:intergenic
CATCCGTTTAAGGTGGTGTT+TGG 0.367003 5_3:+28241149 Msa0807360:CDS
TGTTAACATACCTCAGAAAC+TGG 0.367619 5_3:-28243987 None:intergenic
TTTAAGGTGGTGTTTGGCTT+TGG 0.371671 5_3:+28241155 Msa0807360:CDS
TTAAGCATCCAATTGTTGAT+AGG 0.373763 5_3:+28241821 Msa0807360:CDS
CCAAATGTCCAAAGCCTTCA+AGG 0.386991 5_3:+28242973 Msa0807360:CDS
TAATACCAGCCACTCTGATT+AGG 0.387730 5_3:-28242939 None:intergenic
TTCATCTTTAAGCACAAGAT+TGG 0.393070 5_3:-28241442 None:intergenic
GTCCAATTGTTACAAACATT+CGG 0.396283 5_3:-28241775 None:intergenic
AAGACGTCGGTGTTTGGATC+TGG 0.409259 5_3:+28241405 Msa0807360:CDS
CCTGCTTGATGCGACATTAT+GGG 0.413245 5_3:+28241557 Msa0807360:CDS
ATAAACCATACCACAGCAAC+TGG 0.416921 5_3:-28243764 None:intergenic
GCCTTAAACCTATCAACAAT+TGG 0.424260 5_3:-28241829 None:intergenic
AAGCCAAACACCACCTTAAA+CGG 0.429291 5_3:-28241152 None:intergenic
CGAATTTATGAATTTGATTG+AGG 0.447714 5_3:+28242788 Msa0807360:CDS
AACACATATTGCATTACTGT+TGG 0.448435 5_3:+28242897 Msa0807360:CDS
CATGCACAGTGTAAACTTGC+TGG 0.449243 5_3:+28241654 Msa0807360:CDS
TTAAACTCTAATGATTGAGT+TGG 0.452957 5_3:-28243704 None:intergenic
AAATGTTTGGGATATATCAT+AGG 0.461226 5_3:-28243403 None:intergenic
ATGTAGGTTTCACAATGTCT+AGG 0.465911 5_3:+28240747 None:intergenic
TGAGTTAATATCAAGACAAC+AGG 0.469507 5_3:-28241633 None:intergenic
AAACATTTAGACAATTTACT+TGG 0.469749 5_3:+28243418 Msa0807360:CDS
GATTTAGGGTTCTTGACTCA+TGG 0.469948 5_3:+28240822 Msa0807360:CDS
TCCTTTAAGGAAATTGAAGA+TGG 0.473555 5_3:+28241239 Msa0807360:CDS
CCAAAGCCTTCAAGGTCAAA+TGG 0.474296 5_3:+28242981 Msa0807360:CDS
GCGTTGTGCTAGAATATTGT+CGG 0.483634 5_3:+28243897 Msa0807360:intron
CAGTAATGGTAACAAACATA+TGG 0.488684 5_3:+28240856 Msa0807360:CDS
AAATTCATAAATTCGCCGAT+TGG 0.492108 5_3:-28242780 None:intergenic
AAGGTCTCTGTTCCGAGTTA+TGG 0.494596 5_3:-28241033 None:intergenic
CCCATAATGTCGCATCAAGC+AGG 0.496709 5_3:-28241557 None:intergenic
ACTATACCATACAAAACATC+GGG 0.501333 5_3:-28241272 None:intergenic
TGTGTATGATGGTGATAAAT+CGG 0.501752 5_3:+28243189 Msa0807360:CDS
TGTAGGTTTCACAATGTCTA+GGG 0.505386 5_3:+28240748 None:intergenic
CTTGCTGAACGAAAGAATAC+AGG 0.509202 5_3:+28241609 Msa0807360:CDS
CTGTCTCAAGTTAAGCCAAT+CGG 0.517956 5_3:+28242765 Msa0807360:CDS
AACTATACCATACAAAACAT+CGG 0.520660 5_3:-28241273 None:intergenic
GGACTTAAATCTGAATTCAT+GGG 0.521990 5_3:-28241219 None:intergenic
CCTTCAAGGTCAAATGGTGC+TGG 0.523103 5_3:+28242987 Msa0807360:CDS
TGGATTGTCACTGCCAGTAA+TGG 0.530270 5_3:+28240842 Msa0807360:CDS
CAAATCAGTTCCAGTTTCTG+AGG 0.530348 5_3:+28243977 Msa0807360:CDS
CAATTTACTTGGTCTTGAGT+TGG 0.532056 5_3:+28243429 Msa0807360:CDS
AATCAAATTTACCTCTTGCA+TGG 0.532167 5_3:-28243278 None:intergenic
TTAATCCTAATCAGAGTGGC+TGG 0.537540 5_3:+28242934 Msa0807360:CDS
AATGTTTGTAACAATTGGAC+TGG 0.537876 5_3:+28241778 Msa0807360:CDS
ACTTATTATTGGAGATGCCA+AGG 0.539002 5_3:+28240880 Msa0807360:CDS
TTGTTGATAGGTTTAAGGCT+AGG 0.546601 5_3:+28241833 Msa0807360:CDS
ACATCTGACTGCATACCATC+AGG 0.547580 5_3:-28243550 None:intergenic
GTTGTGCAAGTTGTGTATGA+TGG 0.561221 5_3:+28243178 Msa0807360:CDS
TTAATTCTCTGAATCACAGC+AGG 0.565217 5_3:-28243514 None:intergenic
ACTGCATACCATCAGGATGA+AGG 0.568516 5_3:-28243543 None:intergenic
CTTACTCAGACTTTGTGTCA+AGG 0.569841 5_3:+28242699 Msa0807360:CDS
ATCGCATTCATGCCATAACT+CGG 0.570414 5_3:+28241021 Msa0807360:CDS
AAGCGTCACCTTCATCCTGA+TGG 0.574315 5_3:+28243535 Msa0807360:CDS
TAGGGACTATGACTGTATCA+AGG 0.580357 5_3:+28240766 Msa0807360:CDS
TCAATGACTTCAAATGCTCA+AGG 0.580527 5_3:-28241052 None:intergenic
ATGTTGAAGTTCCATTAACA+AGG 0.600065 5_3:+28243033 Msa0807360:CDS
CTTAAATCTGAATTCATGGG+AGG 0.604342 5_3:-28241216 None:intergenic
AAAAGTAACTCCAGTTGCTG+TGG 0.605589 5_3:+28243754 Msa0807360:CDS
GTCAAGGACATCGAGGGACA+TGG 0.607873 5_3:+28244559 Msa0807360:intron
GGTGTTTGGCTTTGGTACGA+AGG 0.616396 5_3:+28241163 Msa0807360:CDS
TATCGTCAGTCATCTGTGCA+AGG 0.622296 5_3:+28243478 Msa0807360:CDS
TTAAATCTGAATTCATGGGA+GGG 0.630264 5_3:-28241215 None:intergenic
TCTTAGAAAGACCATGCAAG+AGG 0.637724 5_3:+28243267 Msa0807360:CDS
TGTTGATCATCCGTTTAAGG+TGG 0.641983 5_3:+28241142 Msa0807360:CDS
CTATAAATGCACATGTGGAG+AGG 0.656297 5_3:+28243010 Msa0807360:CDS
GCTTTGGTACGAAGGTGACG+AGG 0.661461 5_3:+28241171 Msa0807360:CDS
TTCCGCGTCAAGGACATCGA+GGG 0.664801 5_3:+28244553 Msa0807360:intron
AAGGTTCAAGTTCTTCTCAG+AGG 0.665571 5_3:+28242718 Msa0807360:CDS
GCTGGCTATAAATGCACATG+TGG 0.668706 5_3:+28243005 Msa0807360:CDS
TTAAGCACAAGATTGGTACA+CGG 0.682250 5_3:-28241435 None:intergenic
ACAGATGACTGACGATAATG+TGG 0.687022 5_3:-28243472 None:intergenic
TTTCCGCGTCAAGGACATCG+AGG 0.697862 5_3:+28244552 Msa0807360:intron
TCATGAGATCGTAAAGACGT+CGG 0.701723 5_3:+28241392 Msa0807360:CDS
AAGTTTAATCCTAATCAGAG+TGG 0.704642 5_3:+28242930 Msa0807360:CDS
AGATGTACAAGAAGTTGACG+AGG 0.710130 5_3:+28243567 Msa0807360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTAAGAAATCAT+TGG + chr5_3:28241363-28241382 Msa0807360:intron 10.0%
!!! GTTATATTGTATAATTTTTT+TGG + chr5_3:28241490-28241509 Msa0807360:intron 10.0%
!!! TGAAAATGTTTTTAAATAAT+TGG + chr5_3:28242828-28242847 Msa0807360:intron 10.0%
!! ACAAACAAATTTAAACAATA+AGG - chr5_3:28241305-28241324 None:intergenic 15.0%
!!! TGTTTAAATTTGTTTGTTTT+TGG + chr5_3:28241308-28241327 Msa0807360:intron 15.0%
!!! TTTTTTTAGCATTGATTTTT+TGG + chr5_3:28241727-28241746 Msa0807360:intron 15.0%
!! TCAATATTTCAAACAATATA+AGG - chr5_3:28242623-28242642 None:intergenic 15.0%
!! TGATTTAAAAACTTGATATT+TGG - chr5_3:28244394-28244413 None:intergenic 15.0%
!!! AATATCAAGTTTTTAAATCA+AGG + chr5_3:28244394-28244413 Msa0807360:intron 15.0%
!!! ATATCAAGTTTTTAAATCAA+GGG + chr5_3:28244395-28244414 Msa0807360:intron 15.0%
!!! TACAATTTTGATAAATATGA+AGG - chr5_3:28244440-28244459 None:intergenic 15.0%
!! TGAAAAAGGATTTATATGTT+TGG + chr5_3:28240792-28240811 Msa0807360:CDS 20.0%
!! GATTTATATGTTTGGAAAAT+TGG + chr5_3:28240800-28240819 Msa0807360:CDS 20.0%
!! AAACATATGGAACTTATTAT+TGG + chr5_3:28240869-28240888 Msa0807360:CDS 20.0%
!!! AAAATTATTTTGGATTTGTG+TGG + chr5_3:28240908-28240927 Msa0807360:intron 20.0%
!! AATCCATAAACAAAACAAAA+AGG - chr5_3:28240994-28241013 None:intergenic 20.0%
!!! TTTGTTTTGTTTATGGATTT+AGG + chr5_3:28240995-28241014 Msa0807360:intron 20.0%
!!! TTGTTTTGTTTATGGATTTA+GGG + chr5_3:28240996-28241015 Msa0807360:intron 20.0%
!!! TTGTATAATTTTTTTGGTAG+TGG + chr5_3:28241496-28241515 Msa0807360:intron 20.0%
!! ATTATGGGATAAATATTCTT+TGG + chr5_3:28241572-28241591 Msa0807360:CDS 20.0%
!!! TATTAACTGATATAGTTTGT+TGG + chr5_3:28242237-28242256 Msa0807360:intron 20.0%
!!! TTTTTTTTCCTTCAGATATA+AGG + chr5_3:28243153-28243172 Msa0807360:intron 20.0%
!! AGTAAATTGTCTAAATGTTT+GGG - chr5_3:28243418-28243437 None:intergenic 20.0%
!! AAGTAAATTGTCTAAATGTT+TGG - chr5_3:28243419-28243438 None:intergenic 20.0%
!! AAACATTTAGACAATTTACT+TGG + chr5_3:28243418-28243437 Msa0807360:CDS 20.0%
!!! TGTTTTTAGTTAATAGTTCA+CGG + chr5_3:28244023-28244042 Msa0807360:intron 20.0%
!! ATGTGATATATGAAACTATT+TGG - chr5_3:28244162-28244181 None:intergenic 20.0%
!! TATGGTTAGAAGTTTAATAA+AGG - chr5_3:28244218-28244237 None:intergenic 20.0%
!! TATTAAACTTCTAACCATAT+AGG + chr5_3:28244219-28244238 Msa0807360:intron 20.0%
!!! GACAGATTTGATTTTAAATT+CGG - chr5_3:28244372-28244391 None:intergenic 20.0%
! ATGTTTGGAAAATTGGATTT+AGG + chr5_3:28240807-28240826 Msa0807360:CDS 25.0%
! TGTTTGGAAAATTGGATTTA+GGG + chr5_3:28240808-28240827 Msa0807360:CDS 25.0%
!! CAAAATAATTTTCCTAACCT+TGG - chr5_3:28240900-28240919 None:intergenic 25.0%
!! CAAGGTTAGGAAAATTATTT+TGG + chr5_3:28240898-28240917 Msa0807360:intron 25.0%
!!! TCTCCTTTTTGTTTTGTTTA+TGG + chr5_3:28240988-28241007 Msa0807360:intron 25.0%
! ATTCAGATTTAAGTCCTTTA+AGG + chr5_3:28241226-28241245 Msa0807360:CDS 25.0%
! AACTATACCATACAAAACAT+CGG - chr5_3:28241276-28241295 None:intergenic 25.0%
!!! TTTTGGTTTTTTAAGTGTGA+AGG + chr5_3:28241325-28241344 Msa0807360:intron 25.0%
!!! GGTTCTTATTTTTCAGATAA+CGG + chr5_3:28241748-28241767 Msa0807360:intron 25.0%
!!! GTAGATTTGATTTGTTTTCA+AGG + chr5_3:28241914-28241933 Msa0807360:intron 25.0%
!!! TCAAGGATAGTTTTATGTTT+AGG + chr5_3:28241931-28241950 Msa0807360:intron 25.0%
!! GCAGTAATTATAGTTTGTAT+CGG + chr5_3:28242026-28242045 Msa0807360:intron 25.0%
!! CAGTAATTATAGTTTGTATC+GGG + chr5_3:28242027-28242046 Msa0807360:intron 25.0%
!!! TTGTTTAGTTTTAGCATCTT+TGG + chr5_3:28242072-28242091 Msa0807360:intron 25.0%
! ATTTACATACACATAAGTGA+TGG + chr5_3:28242192-28242211 Msa0807360:intron 25.0%
!!! AAACTTTTAAAAGGGCTAAT+TGG - chr5_3:28242468-28242487 None:intergenic 25.0%
!!! CATTGAGGAAACTTTTAAAA+GGG - chr5_3:28242476-28242495 None:intergenic 25.0%
!! TCATTGAGGAAACTTTTAAA+AGG - chr5_3:28242477-28242496 None:intergenic 25.0%
! CGAATTTATGAATTTGATTG+AGG + chr5_3:28242788-28242807 Msa0807360:CDS 25.0%
! TATATAGACAACCTTGTTAA+TGG - chr5_3:28243047-28243066 None:intergenic 25.0%
! TATGTAGTAACTTTGTCTAT+AGG + chr5_3:28243330-28243349 Msa0807360:intron 25.0%
!! AACTTTGTCTATAGGAATTT+TGG + chr5_3:28243338-28243357 Msa0807360:intron 25.0%
!! AAATGTTTGGGATATATCAT+AGG - chr5_3:28243406-28243425 None:intergenic 25.0%
! TTAAACTCTAATGATTGAGT+TGG - chr5_3:28243707-28243726 None:intergenic 25.0%
! GTCTTAATATTTGATTCAAG+TGG + chr5_3:28243816-28243835 Msa0807360:intron 25.0%
! CGCAATTAAAATCAAAACAA+AGG - chr5_3:28243880-28243899 None:intergenic 25.0%
!! ATATATCACATTTTGCATCA+AGG + chr5_3:28244171-28244190 Msa0807360:intron 25.0%
!! TATATCACATTTTGCATCAA+GGG + chr5_3:28244172-28244191 Msa0807360:intron 25.0%
!!! AAATGAGATTTTAGCCTATA+TGG - chr5_3:28244236-28244255 None:intergenic 25.0%
! TTCTCATTTATCAAACTTGT+AGG + chr5_3:28244292-28244311 Msa0807360:intron 25.0%
!! TACCAAAAATCAAATTTTCG+CGG + chr5_3:28244321-28244340 Msa0807360:intron 25.0%
!! AAGTTTTTAAATCAAGGGAA+GGG + chr5_3:28244400-28244419 Msa0807360:intron 25.0%
!! AAACGAGATTTTAGACTATA+TGG - chr5_3:28244464-28244483 None:intergenic 25.0%
CTGTATCAAGGATTTGAAAA+AGG + chr5_3:28240778-28240797 Msa0807360:CDS 30.0%
! CATATGTTTGTTACCATTAC+TGG - chr5_3:28240858-28240877 None:intergenic 30.0%
CAGTAATGGTAACAAACATA+TGG + chr5_3:28240856-28240875 Msa0807360:CDS 30.0%
!!! ATTATTTTGGATTTGTGTGG+TGG + chr5_3:28240911-28240930 Msa0807360:intron 30.0%
TTAAATCTGAATTCATGGGA+GGG - chr5_3:28241218-28241237 None:intergenic 30.0%
GGACTTAAATCTGAATTCAT+GGG - chr5_3:28241222-28241241 None:intergenic 30.0%
AGGACTTAAATCTGAATTCA+TGG - chr5_3:28241223-28241242 None:intergenic 30.0%
! TCCTTTAAGGAAATTGAAGA+TGG + chr5_3:28241239-28241258 Msa0807360:CDS 30.0%
TCCATCTTCAATTTCCTTAA+AGG - chr5_3:28241243-28241262 None:intergenic 30.0%
ACTATACCATACAAAACATC+GGG - chr5_3:28241275-28241294 None:intergenic 30.0%
TTCATCTTTAAGCACAAGAT+TGG - chr5_3:28241445-28241464 None:intergenic 30.0%
TGAGTTAATATCAAGACAAC+AGG - chr5_3:28241636-28241655 None:intergenic 30.0%
GTCCAATTGTTACAAACATT+CGG - chr5_3:28241778-28241797 None:intergenic 30.0%
AATGTTTGTAACAATTGGAC+TGG + chr5_3:28241778-28241797 Msa0807360:CDS 30.0%
TTAAGCATCCAATTGTTGAT+AGG + chr5_3:28241821-28241840 Msa0807360:CDS 30.0%
! TCCAATTGTTGATAGGTTTA+AGG + chr5_3:28241828-28241847 Msa0807360:CDS 30.0%
ACTATTTATGCAACTACGTA+AGG - chr5_3:28242120-28242139 None:intergenic 30.0%
! TGGTAGAGTCATGATTATTT+TGG + chr5_3:28242257-28242276 Msa0807360:intron 30.0%
GTAAACTATAATGATGCCAT+TGG + chr5_3:28242298-28242317 Msa0807360:intron 30.0%
TAAAAAGAGCAGAATTTCAC+AGG + chr5_3:28242342-28242361 Msa0807360:intron 30.0%
CTGACATCAAAAGTTATGTA+TGG + chr5_3:28242510-28242529 Msa0807360:intron 30.0%
AAAATGATTGTACACAACCA+TGG - chr5_3:28242577-28242596 None:intergenic 30.0%
! TTCGAGAATTCATCATTTTG+CGG - chr5_3:28242744-28242763 None:intergenic 30.0%
AAATTCATAAATTCGCCGAT+TGG - chr5_3:28242783-28242802 None:intergenic 30.0%
AACACATATTGCATTACTGT+TGG + chr5_3:28242897-28242916 Msa0807360:CDS 30.0%
AAGTTTAATCCTAATCAGAG+TGG + chr5_3:28242930-28242949 Msa0807360:CDS 30.0%
ATGTTGAAGTTCCATTAACA+AGG + chr5_3:28243033-28243052 Msa0807360:CDS 30.0%
!!! TGTGATTAGTTGATAGCTTT+TGG + chr5_3:28243075-28243094 Msa0807360:intron 30.0%
!!! TTAGTTGATAGCTTTTGGTT+TGG + chr5_3:28243080-28243099 Msa0807360:intron 30.0%
! TTTTTCCTTCAGATATAAGG+TGG + chr5_3:28243156-28243175 Msa0807360:intron 30.0%
! TGTGTATGATGGTGATAAAT+CGG + chr5_3:28243189-28243208 Msa0807360:CDS 30.0%
! ATAAATCGGACTTTGTGTTT+TGG + chr5_3:28243203-28243222 Msa0807360:CDS 30.0%
! TAAATCGGACTTTGTGTTTT+GGG + chr5_3:28243204-28243223 Msa0807360:CDS 30.0%
AATCAAATTTACCTCTTGCA+TGG - chr5_3:28243281-28243300 None:intergenic 30.0%
ATAATTGTGTTTGTTCCTGA+AGG + chr5_3:28243366-28243385 Msa0807360:intron 30.0%
TATTTGATTCAAGTGGTAGT+AGG + chr5_3:28243823-28243842 Msa0807360:intron 30.0%
! CAAGTTTTTAAATCAAGGGA+AGG + chr5_3:28244399-28244418 Msa0807360:intron 30.0%
! ATTCGGTAAAATGAAGGTAT+TGG - chr5_3:28244504-28244523 None:intergenic 30.0%
TTTCGTATTCGGTAAAATGA+AGG - chr5_3:28244510-28244529 None:intergenic 30.0%
! AACCTATTTGGTTTCGTATT+CGG - chr5_3:28244521-28244540 None:intergenic 30.0%
ACATGATATGTGAACCTATT+TGG - chr5_3:28244533-28244552 None:intergenic 30.0%
ACTTATTATTGGAGATGCCA+AGG + chr5_3:28240880-28240899 Msa0807360:CDS 35.0%
TCAATGACTTCAAATGCTCA+AGG - chr5_3:28241055-28241074 None:intergenic 35.0%
CTTAAATCTGAATTCATGGG+AGG - chr5_3:28241219-28241238 None:intergenic 35.0%
TTAAGCACAAGATTGGTACA+CGG - chr5_3:28241438-28241457 None:intergenic 35.0%
AGCCGAATGTTTGTAACAAT+TGG + chr5_3:28241773-28241792 Msa0807360:CDS 35.0%
GCCTTAAACCTATCAACAAT+TGG - chr5_3:28241832-28241851 None:intergenic 35.0%
! TTGTTGATAGGTTTAAGGCT+AGG + chr5_3:28241833-28241852 Msa0807360:CDS 35.0%
ATCTTTGGCAGACTTAAGAT+AGG + chr5_3:28242087-28242106 Msa0807360:intron 35.0%
! AATTTCACAGGATGATGATG+CGG + chr5_3:28242354-28242373 Msa0807360:intron 35.0%
GAAGAATTGAGTGATCATTG+AGG - chr5_3:28242491-28242510 None:intergenic 35.0%
TTTAGACACTTAACCAACCA+TGG + chr5_3:28242557-28242576 Msa0807360:intron 35.0%
AAGGAATGTCTTCAGATTCT+TGG + chr5_3:28243229-28243248 Msa0807360:CDS 35.0%
!! CAATTTACTTGGTCTTGAGT+TGG + chr5_3:28243429-28243448 Msa0807360:CDS 35.0%
TTAATTCTCTGAATCACAGC+AGG - chr5_3:28243517-28243536 None:intergenic 35.0%
TGTTAACATACCTCAGAAAC+TGG - chr5_3:28243990-28244009 None:intergenic 35.0%
!! GTCCGCGAAAATTTGATTTT+TGG - chr5_3:28244326-28244345 None:intergenic 35.0%
! AAATCAAATTTTCGCGGACA+AGG + chr5_3:28244327-28244346 Msa0807360:intron 35.0%
! AATCAAATTTTCGCGGACAA+GGG + chr5_3:28244328-28244347 Msa0807360:intron 35.0%
! TTTTAAATCAAGGGAAGGGA+AGG + chr5_3:28244404-28244423 Msa0807360:intron 35.0%
! AAAATCTCGTTTTCGCAACA+AGG + chr5_3:28244472-28244491 Msa0807360:intron 35.0%
! AAATCTCGTTTTCGCAACAA+GGG + chr5_3:28244473-28244492 Msa0807360:intron 35.0%
TACCGAATACGAAACCAAAT+AGG + chr5_3:28244516-28244535 Msa0807360:intron 35.0%
TAGGGACTATGACTGTATCA+AGG + chr5_3:28240766-28240785 Msa0807360:CDS 40.0%
! GATTTAGGGTTCTTGACTCA+TGG + chr5_3:28240822-28240841 Msa0807360:CDS 40.0%
TTATTGGAGATGCCAAGGTT+AGG + chr5_3:28240885-28240904 Msa0807360:intron 40.0%
ATCGCATTCATGCCATAACT+CGG + chr5_3:28241021-28241040 Msa0807360:CDS 40.0%
GCATGTTGATCATCCGTTTA+AGG + chr5_3:28241139-28241158 Msa0807360:CDS 40.0%
TGTTGATCATCCGTTTAAGG+TGG + chr5_3:28241142-28241161 Msa0807360:CDS 40.0%
AAGCCAAACACCACCTTAAA+CGG - chr5_3:28241155-28241174 None:intergenic 40.0%
! TTTAAGGTGGTGTTTGGCTT+TGG + chr5_3:28241155-28241174 Msa0807360:CDS 40.0%
! TTCAAGCCCGATGTTTTGTA+TGG + chr5_3:28241266-28241285 Msa0807360:CDS 40.0%
TCATGAGATCGTAAAGACGT+CGG + chr5_3:28241392-28241411 Msa0807360:CDS 40.0%
CTTGCTGAACGAAAGAATAC+AGG + chr5_3:28241609-28241628 Msa0807360:CDS 40.0%
!! TAGTTTGTATCGGGCTGTTT+TGG + chr5_3:28242036-28242055 Msa0807360:intron 40.0%
AACACTCTGATATAGAGTCG+AGG - chr5_3:28242165-28242184 None:intergenic 40.0%
ACATACACATAAGTGATGGC+TGG + chr5_3:28242196-28242215 Msa0807360:intron 40.0%
ATGATGCCATTGGATCACTT+TGG + chr5_3:28242308-28242327 Msa0807360:intron 40.0%
ATGCAACCAAAGTGATCCAA+TGG - chr5_3:28242317-28242336 None:intergenic 40.0%
! CTGACTTGATCAAGATTGTG+CGG + chr5_3:28242429-28242448 Msa0807360:intron 40.0%
TGATTGTACACAACCATGGT+TGG - chr5_3:28242573-28242592 None:intergenic 40.0%
! TTTTGCAGTCTTCAAGCTCA+TGG + chr5_3:28242669-28242688 Msa0807360:intron 40.0%
CTTACTCAGACTTTGTGTCA+AGG + chr5_3:28242699-28242718 Msa0807360:CDS 40.0%
! AAGGTTCAAGTTCTTCTCAG+AGG + chr5_3:28242718-28242737 Msa0807360:CDS 40.0%
CTGTCTCAAGTTAAGCCAAT+CGG + chr5_3:28242765-28242784 Msa0807360:CDS 40.0%
TTAATCCTAATCAGAGTGGC+TGG + chr5_3:28242934-28242953 Msa0807360:CDS 40.0%
TAATACCAGCCACTCTGATT+AGG - chr5_3:28242942-28242961 None:intergenic 40.0%
CTATAAATGCACATGTGGAG+AGG + chr5_3:28243010-28243029 Msa0807360:CDS 40.0%
CACAACCACCTTATATCTGA+AGG - chr5_3:28243164-28243183 None:intergenic 40.0%
GTTGTGCAAGTTGTGTATGA+TGG + chr5_3:28243178-28243197 Msa0807360:CDS 40.0%
TCTTAGAAAGACCATGCAAG+AGG + chr5_3:28243267-28243286 Msa0807360:CDS 40.0%
TTGTGTTTGTTCCTGAAGGT+TGG + chr5_3:28243370-28243389 Msa0807360:intron 40.0%
ACAGATGACTGACGATAATG+TGG - chr5_3:28243475-28243494 None:intergenic 40.0%
AGATGTACAAGAAGTTGACG+AGG + chr5_3:28243567-28243586 Msa0807360:CDS 40.0%
AAAAGTAACTCCAGTTGCTG+TGG + chr5_3:28243754-28243773 Msa0807360:CDS 40.0%
ATAAACCATACCACAGCAAC+TGG - chr5_3:28243767-28243786 None:intergenic 40.0%
GCGTTGTGCTAGAATATTGT+CGG + chr5_3:28243897-28243916 Msa0807360:intron 40.0%
CAAATCAGTTCCAGTTTCTG+AGG + chr5_3:28243977-28243996 Msa0807360:CDS 40.0%
TGGATTGTCACTGCCAGTAA+TGG + chr5_3:28240842-28240861 Msa0807360:CDS 45.0%
AAGGTCTCTGTTCCGAGTTA+TGG - chr5_3:28241036-28241055 None:intergenic 45.0%
! CATCCGTTTAAGGTGGTGTT+TGG + chr5_3:28241149-28241168 Msa0807360:CDS 45.0%
! ATCGTAAAGACGTCGGTGTT+TGG + chr5_3:28241399-28241418 Msa0807360:CDS 45.0%
GTGTCTGAGAATGTTGTTGC+TGG + chr5_3:28241523-28241542 Msa0807360:intron 45.0%
GAATGTTGTTGCTGGTGTAG+TGG + chr5_3:28241531-28241550 Msa0807360:intron 45.0%
ACCTGCTTGATGCGACATTA+TGG + chr5_3:28241556-28241575 Msa0807360:CDS 45.0%
CCTGCTTGATGCGACATTAT+GGG + chr5_3:28241557-28241576 Msa0807360:CDS 45.0%
CATGCACAGTGTAAACTTGC+TGG + chr5_3:28241654-28241673 Msa0807360:CDS 45.0%
GCAACACACAACTATGCATC+TGG - chr5_3:28241984-28242003 None:intergenic 45.0%
! GTGTTGCTGATCTGTAGCTT+TGG + chr5_3:28241997-28242016 Msa0807360:intron 45.0%
!! CCTTGAAGGCTTTGGACATT+TGG - chr5_3:28242976-28242995 None:intergenic 45.0%
CCAAATGTCCAAAGCCTTCA+AGG + chr5_3:28242973-28242992 Msa0807360:CDS 45.0%
CCATTTGACCTTGAAGGCTT+TGG - chr5_3:28242984-28243003 None:intergenic 45.0%
CCAAAGCCTTCAAGGTCAAA+TGG + chr5_3:28242981-28243000 Msa0807360:CDS 45.0%
GCTGGCTATAAATGCACATG+TGG + chr5_3:28243005-28243024 Msa0807360:CDS 45.0%
!!! GGACTTTGTGTTTTGGGACA+AGG + chr5_3:28243210-28243229 Msa0807360:CDS 45.0%
GATCATCTTCACCAACCTTC+AGG - chr5_3:28243384-28243403 None:intergenic 45.0%
TATCGTCAGTCATCTGTGCA+AGG + chr5_3:28243478-28243497 Msa0807360:CDS 45.0%
ACTGCATACCATCAGGATGA+AGG - chr5_3:28243546-28243565 None:intergenic 45.0%
ACATCTGACTGCATACCATC+AGG - chr5_3:28243553-28243572 None:intergenic 45.0%
TAACTCCAGTTGCTGTGGTA+TGG + chr5_3:28243759-28243778 Msa0807360:intron 45.0%
! TTTTGCATCAAGGGACATCG+AGG + chr5_3:28244181-28244200 Msa0807360:intron 45.0%
TTTGCATCAAGGGACATCGA+GGG + chr5_3:28244182-28244201 Msa0807360:intron 45.0%
CATATCATGTTTCCGCGTCA+AGG + chr5_3:28244543-28244562 Msa0807360:intron 45.0%
!! GGTGTTTGGCTTTGGTACGA+AGG + chr5_3:28241163-28241182 Msa0807360:CDS 50.0%
! AAGACGTCGGTGTTTGGATC+TGG + chr5_3:28241405-28241424 Msa0807360:CDS 50.0%
CCCATAATGTCGCATCAAGC+AGG - chr5_3:28241560-28241579 None:intergenic 50.0%
GACATCAACCTAGCAGCAAC+AGG - chr5_3:28241962-28241981 None:intergenic 50.0%
CCAGCACCATTTGACCTTGA+AGG - chr5_3:28242990-28243009 None:intergenic 50.0%
CCTTCAAGGTCAAATGGTGC+TGG + chr5_3:28242987-28243006 Msa0807360:CDS 50.0%
AAGCGTCACCTTCATCCTGA+TGG + chr5_3:28243535-28243554 Msa0807360:CDS 50.0%
TCGCCTCATGTTTCGCATCA+AGG + chr5_3:28244256-28244275 Msa0807360:intron 50.0%
CGCCTCATGTTTCGCATCAA+GGG + chr5_3:28244257-28244276 Msa0807360:intron 50.0%
GTCCCTTGATGCGAAACATG+AGG - chr5_3:28244262-28244281 None:intergenic 50.0%
GCTTTGGTACGAAGGTGACG+AGG + chr5_3:28241171-28241190 Msa0807360:CDS 55.0%
AGGTGTGTCCTGTTGCTGCT+AGG + chr5_3:28241951-28241970 Msa0807360:intron 55.0%
TTTCCGCGTCAAGGACATCG+AGG + chr5_3:28244552-28244571 Msa0807360:intron 55.0%
TTCCGCGTCAAGGACATCGA+GGG + chr5_3:28244553-28244572 Msa0807360:intron 55.0%
GTCAAGGACATCGAGGGACA+TGG + chr5_3:28244559-28244578 Msa0807360:intron 55.0%
GTCCCTCGATGTCCTTGACG+CGG - chr5_3:28244558-28244577 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 28240761 28244609 28240761 ID=Msa0807360;Name=Msa0807360
chr5_3 mRNA 28240761 28244609 28240761 ID=Msa0807360-mRNA-1;Parent=Msa0807360;Name=Msa0807360-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0.18|0.08|0.25|1|1|12|0|518
chr5_3 exon 28240761 28240901 28240761 ID=Msa0807360-mRNA-1:exon:10067;Parent=Msa0807360-mRNA-1
chr5_3 exon 28241017 28241287 28241017 ID=Msa0807360-mRNA-1:exon:10068;Parent=Msa0807360-mRNA-1
chr5_3 exon 28241376 28241466 28241376 ID=Msa0807360-mRNA-1:exon:10069;Parent=Msa0807360-mRNA-1
chr5_3 exon 28241551 28241675 28241551 ID=Msa0807360-mRNA-1:exon:10070;Parent=Msa0807360-mRNA-1
chr5_3 exon 28241764 28241854 28241764 ID=Msa0807360-mRNA-1:exon:10071;Parent=Msa0807360-mRNA-1
chr5_3 exon 28242677 28242809 28242677 ID=Msa0807360-mRNA-1:exon:10072;Parent=Msa0807360-mRNA-1
chr5_3 exon 28242897 28243054 28242897 ID=Msa0807360-mRNA-1:exon:10073;Parent=Msa0807360-mRNA-1
chr5_3 exon 28243168 28243288 28243168 ID=Msa0807360-mRNA-1:exon:10074;Parent=Msa0807360-mRNA-1
chr5_3 exon 28243388 28243588 28243388 ID=Msa0807360-mRNA-1:exon:10075;Parent=Msa0807360-mRNA-1
chr5_3 exon 28243686 28243775 28243686 ID=Msa0807360-mRNA-1:exon:10076;Parent=Msa0807360-mRNA-1
chr5_3 exon 28243909 28243998 28243909 ID=Msa0807360-mRNA-1:exon:10077;Parent=Msa0807360-mRNA-1
chr5_3 exon 28244565 28244609 28244565 ID=Msa0807360-mRNA-1:exon:10078;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28240761 28240901 28240761 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28241017 28241287 28241017 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28241376 28241466 28241376 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28241551 28241675 28241551 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28241764 28241854 28241764 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28242677 28242809 28242677 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28242897 28243054 28242897 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28243168 28243288 28243168 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28243388 28243588 28243388 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28243686 28243775 28243686 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28243909 28243998 28243909 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
chr5_3 CDS 28244565 28244609 28244565 ID=Msa0807360-mRNA-1:cds;Parent=Msa0807360-mRNA-1
Gene Sequence

>Msa0807360

ATGTCTAGGGACTATGACTGTATCAAGGATTTGAAAAAGGATTTATATGTTTGGAAAATTGGATTTAGGGTTCTTGACTCATGGATTGTCACTGCCAGTAATGGTAACAAACATATGGAACTTATTATTGGAGATGCCAAGGGTGATCGCATTCATGCCATAACTCGGAACAGAGACCTTGAGCATTTGAAGTCATTGATTGAAGATAACAAGACTTATGTTTTACATAATTGTCTTGTGTTTGATAATGATTCTGCGTTCAAGCATGTTGATCATCCGTTTAAGGTGGTGTTTGGCTTTGGTACGAAGGTGACGAGGAATGACAAGCTAATTGATATTCCCTCCCATGAATTCAGATTTAAGTCCTTTAAGGAAATTGAAGATGGAGATTTCAAGCCCGATGTTTTGTATGAAATCATTGGTCTTATTCATGAGATCGTAAAGACGTCGGTGTTTGGATCTGGAAAAAAGCCGTGTACCAATCTTGTGCTTAAAGATGAAGCTGGAAACCTGCTTGATGCGACATTATGGGATAAATATTCTTTGGATTTGATGAAATATCTTGCTGAACGAAAGAATACAGGTCCTGTTGTCTTGATATTAACTCATGCACAGTGTAAACTTGCTGATAACGGTAAGCCGAATGTTTGTAACAATTGGACTGGCTCAAAGTTGCTTATCAATTTTAAGCATCCAATTGTTGATAGGTTTAAGGCTAGTCTTCAAGCTCATGGTAATGCTCTTACTCAGACTTTGTGTCAAGGTTCAAGTTCTTCTCAGAGGCCGCAAAATGATGAATTCTCGAATCTGTCTCAAGTTAAGCCAATCGGCGAATTTATGAATTTGATTGAGAACACATATTGCATTACTGTTGGAAAAACAAACAAGTTTAATCCTAATCAGAGTGGCTGGTATTATGAGAGCTGTACCAAATGTCCAAAGCCTTCAAGGTCAAATGGTGCTGGCTATAAATGCACATGTGGAGAGGATGTTGAAGTTCCATTAACAAGATATAAGGTGGTTGTGCAAGTTGTGTATGATGGTGATAAATCGGACTTTGTGTTTTGGGACAAGGAATGTCTTCAGATTCTTGGTGTAACTGCTGATGCTCTTAGAAAGACCATGCAAGAGGTTGGTGAAGATGATCCTATGATATATCCCAAACATTTAGACAATTTACTTGGTCTTGAGTTGGCGTTGCGTGTTAAGTATCAGCCACATTATCGTCAGTCATCTGTGCAAGGTTTTTCGTCTGATCCTGCTGTGATTCAGAGAATTAAGCGTCACCTTCATCCTGATGGTATGCAGTCAGATGTACAAGAAGTTGACGAGAACATTGTCAATAATAATCCAACTCAATCATTAGAGTTTAAGAAGATGAGTGCTCTTGCTGAATGTTCAAAAGTAACTCCAGTTGCTGTGAATATTGTCGGTAACAATTCAACTCAGTCTGTGAAACTTGAACAAGATAGCTCTTCTGCTGAATGCTTCAAATCAGTTCCAGTTTCTGAGGACATCGAGGGACATGGTCAAACTTCAAAATTGTCAAACCTTTAA

Protein sequence

>Msa0807360

MSRDYDCIKDLKKDLYVWKIGFRVLDSWIVTASNGNKHMELIIGDAKGDRIHAITRNRDLEHLKSLIEDNKTYVLHNCLVFDNDSAFKHVDHPFKVVFGFGTKVTRNDKLIDIPSHEFRFKSFKEIEDGDFKPDVLYEIIGLIHEIVKTSVFGSGKKPCTNLVLKDEAGNLLDATLWDKYSLDLMKYLAERKNTGPVVLILTHAQCKLADNGKPNVCNNWTGSKLLINFKHPIVDRFKASLQAHGNALTQTLCQGSSSSQRPQNDEFSNLSQVKPIGEFMNLIENTYCITVGKTNKFNPNQSGWYYESCTKCPKPSRSNGAGYKCTCGEDVEVPLTRYKVVVQVVYDGDKSDFVFWDKECLQILGVTADALRKTMQEVGEDDPMIYPKHLDNLLGLELALRVKYQPHYRQSSVQGFSSDPAVIQRIKRHLHPDGMQSDVQEVDENIVNNNPTQSLEFKKMSALAECSKVTPVAVNIVGNNSTQSVKLEQDSSSAECFKSVPVSEDIEGHGQTSKLSNL*