Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237100 | XP_039682983.1 | 69.776 | 268 | 73 | 4 | 1 | 264 | 292 | 555 | 1.39e-122 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0807360 | Msa1237100 | 0.819317 | 1.237774e-52 | -8.615850e-47 |
| Msa1237100 | Msa1242880 | 0.863339 | 2.672394e-64 | -8.615850e-47 |
| Msa1075670 | Msa1237100 | 0.906241 | 1.830382e-80 | -8.615850e-47 |
| Msa1075680 | Msa1237100 | 0.807017 | 6.205776e-50 | -8.615850e-47 |
| Msa1075690 | Msa1237100 | 0.837973 | 3.788235e-57 | -8.615850e-47 |
| Msa1131640 | Msa1237100 | 0.811078 | 8.381127e-51 | -8.615850e-47 |
| Msa1131660 | Msa1237100 | 0.885299 | 9.161448e-72 | -8.615850e-47 |
| Msa1131730 | Msa1237100 | 0.815878 | 7.375948e-52 | -8.615850e-47 |
| Msa0872070 | Msa1237100 | 0.847359 | 1.215976e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237100 | MtrunA17_Chr5g0393521 | 33.088 | 136 | 91 | 0 | 1 | 136 | 48 | 183 | 3.51e-24 | 98.6 |
| Msa1237100 | MtrunA17_Chr5g0417421 | 34.091 | 132 | 87 | 0 | 5 | 136 | 120 | 251 | 4.07e-24 | 98.2 |
| Msa1237100 | MtrunA17_Chr1g0167871 | 36.885 | 122 | 77 | 0 | 1 | 122 | 495 | 616 | 1.58e-23 | 99.8 |
| Msa1237100 | MtrunA17_Chr6g0474551 | 73.469 | 49 | 13 | 0 | 1 | 49 | 55 | 103 | 8.05e-21 | 84.7 |
| Msa1237100 | MtrunA17_Chr2g0304851 | 38.835 | 103 | 61 | 1 | 5 | 107 | 283 | 383 | 7.80e-20 | 87.8 |
| Msa1237100 | MtrunA17_Chr8g0363081 | 85.000 | 40 | 6 | 0 | 70 | 109 | 56 | 95 | 5.40e-18 | 77.0 |
| Msa1237100 | MtrunA17_Chr5g0421991 | 27.203 | 261 | 147 | 8 | 1 | 258 | 45 | 265 | 3.00e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATAGACAACCTTGTTAA+TGG | 0.170395 | 8_2:-16366688 | None:intergenic |
| AAGTAAATTGTCTAAATGTT+TGG | 0.295647 | 8_2:-16367059 | None:intergenic |
| CCTTGAAGGCTTTGGACATT+TGG | 0.297765 | 8_2:-16366617 | None:intergenic |
| AGTAAATTGTCTAAATGTTT+GGG | 0.325835 | 8_2:-16367058 | None:intergenic |
| TCAGCAAATGAACGTCTTGC+AGG | 0.328519 | 8_2:-16368847 | None:intergenic |
| CCATTTGACCTTGAAGGCTT+TGG | 0.331312 | 8_2:-16366625 | None:intergenic |
| AAGGAATGTCTTCAGATTCT+TGG | 0.338819 | 8_2:+16366872 | Msa1237100:CDS |
| ATAAATCGGACTTTGTGTTT+TGG | 0.350479 | 8_2:+16366846 | Msa1237100:CDS |
| CCAGCACCATTTGACCTTGA+AGG | 0.362700 | 8_2:-16366631 | None:intergenic |
| TGTTAACATACCTCAGAAAC+TGG | 0.367619 | 8_2:-16368021 | None:intergenic |
| CCAAATGTCCAAAGCCTTCA+AGG | 0.386991 | 8_2:+16366617 | Msa1237100:CDS |
| TAATACCAGCCACTCTGATT+AGG | 0.387730 | 8_2:-16366583 | None:intergenic |
| ATAAACCATACCACAGCAAC+TGG | 0.416921 | 8_2:-16367407 | None:intergenic |
| TTAAACTCTAATGATTGAGT+TGG | 0.452957 | 8_2:-16367347 | None:intergenic |
| AAATGTTTGGGATATATCAT+AGG | 0.461226 | 8_2:-16367046 | None:intergenic |
| AAACATTTAGACAATTTACT+TGG | 0.469749 | 8_2:+16367061 | Msa1237100:CDS |
| CCAAAGCCTTCAAGGTCAAA+TGG | 0.474296 | 8_2:+16366625 | Msa1237100:CDS |
| GCGTTGTGCTAGAATATTGT+CGG | 0.483634 | 8_2:+16367931 | Msa1237100:intron |
| AGTGCATTTAGCCAACTTAA+CGG | 0.488629 | 8_2:-16368923 | None:intergenic |
| ACAGTTATCTTCCGTTAAGT+TGG | 0.497994 | 8_2:+16368912 | Msa1237100:CDS |
| TGTGTATGATGGTGATAAAT+CGG | 0.501752 | 8_2:+16366832 | Msa1237100:CDS |
| CCTTCAAGGTCAAATGGTGC+TGG | 0.523103 | 8_2:+16366631 | Msa1237100:CDS |
| CAGGGGTCTGTTTCTGTGAG+TGG | 0.525221 | 8_2:+16368781 | Msa1237100:intron |
| TGTGAGTGGGAAAAGTGGTC+TGG | 0.525933 | 8_2:+16368795 | Msa1237100:CDS |
| CAAATCAGTTCCAGTTTCTG+AGG | 0.530348 | 8_2:+16368011 | Msa1237100:CDS |
| CAATTTACTTGGTCTTGAGT+TGG | 0.532056 | 8_2:+16367072 | Msa1237100:CDS |
| AATCAAATTTACCTCTTGCA+TGG | 0.532167 | 8_2:-16366921 | None:intergenic |
| TTAATCCTAATCAGAGTGGC+TGG | 0.537540 | 8_2:+16366578 | Msa1237100:CDS |
| ACATCTGACTGCATACCATC+AGG | 0.547580 | 8_2:-16367193 | None:intergenic |
| TTAACGGAAGATAACTGTGT+TGG | 0.551162 | 8_2:-16368907 | None:intergenic |
| GTTTCTGTGAGTGGGAAAAG+TGG | 0.557971 | 8_2:+16368790 | Msa1237100:CDS |
| GTTGTGCAAGTTGTGTATGA+TGG | 0.561221 | 8_2:+16366821 | Msa1237100:CDS |
| TTAATTCTCTGAATCACAGC+AGG | 0.565217 | 8_2:-16367157 | None:intergenic |
| ACTGCATACCATCAGGATGA+AGG | 0.568516 | 8_2:-16367186 | None:intergenic |
| AGGGGTCTGTTTCTGTGAGT+GGG | 0.572154 | 8_2:+16368782 | Msa1237100:intron |
| AAGCGTCACCTTCATCCTGA+TGG | 0.574315 | 8_2:+16367178 | Msa1237100:CDS |
| ATGTTGAAGTTCCATTAACA+AGG | 0.600065 | 8_2:+16366677 | Msa1237100:CDS |
| AAAAGTAACTCCAGTTGCTG+TGG | 0.605589 | 8_2:+16367397 | Msa1237100:CDS |
| TATCGTCAGTCATCTGTGCA+AGG | 0.622296 | 8_2:+16367121 | Msa1237100:CDS |
| GTGGTCTGGATCAAAGTGGT+AGG | 0.631899 | 8_2:+16368809 | Msa1237100:CDS |
| TCTTAGAAAGACCATGCAAG+AGG | 0.637724 | 8_2:+16366910 | Msa1237100:CDS |
| GTTGGCTAAATGCACTGACA+AGG | 0.652484 | 8_2:+16368930 | Msa1237100:CDS |
| CTATAAATGCACATGTGGAG+AGG | 0.656297 | 8_2:+16366654 | Msa1237100:CDS |
| GCTGGCTATAAATGCACATG+TGG | 0.668706 | 8_2:+16366649 | Msa1237100:CDS |
| ACAGATGACTGACGATAATG+TGG | 0.687022 | 8_2:-16367115 | None:intergenic |
| AAGTTTAATCCTAATCAGAG+TGG | 0.704642 | 8_2:+16366574 | Msa1237100:CDS |
| AAAAGTGGTCTGGATCAAAG+TGG | 0.720897 | 8_2:+16368805 | Msa1237100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATTAATCAAATATCAAA+GGG | - | chr8_2:16368654-16368673 | None:intergenic | 15.0% |
| !! | AATCATTAATCAAATATCAA+AGG | - | chr8_2:16368655-16368674 | None:intergenic | 15.0% |
| !! | ATCATTAATCAAATATCAAA+GGG | - | chr8_2:16368654-16368673 | None:intergenic | 15.0% |
| !! | AATCATTAATCAAATATCAA+AGG | - | chr8_2:16368655-16368674 | None:intergenic | 15.0% |
| !! | AGTAAATTGTCTAAATGTTT+GGG | - | chr8_2:16367061-16367080 | None:intergenic | 20.0% |
| !! | AAGTAAATTGTCTAAATGTT+TGG | - | chr8_2:16367062-16367081 | None:intergenic | 20.0% |
| !! | AAACATTTAGACAATTTACT+TGG | + | chr8_2:16367061-16367080 | Msa1237100:CDS | 20.0% |
| !!! | TGTTTTTAGTTAATAGTTCA+CGG | + | chr8_2:16367666-16367685 | Msa1237100:intron | 20.0% |
| !! | ATTAGTATGATTTATTGAAG+TGG | + | chr8_2:16367714-16367733 | Msa1237100:intron | 20.0% |
| !! | CGCAATTAAAATAAAAACAA+AGG | - | chr8_2:16367914-16367933 | None:intergenic | 20.0% |
| !!! | TTTTAACATTACTTTTGTGT+CGG | - | chr8_2:16368240-16368259 | None:intergenic | 20.0% |
| !! | ATGTTAAAATTACTTAAAGC+TGG | + | chr8_2:16368251-16368270 | Msa1237100:intron | 20.0% |
| !! | TGTTAAAATTACTTAAAGCT+GGG | + | chr8_2:16368252-16368271 | Msa1237100:intron | 20.0% |
| !! | TCATTAATCAAATATCAAAG+GGG | - | chr8_2:16368653-16368672 | None:intergenic | 20.0% |
| !! | CAAACTGTATAAATCAAAAT+CGG | - | chr8_2:16368722-16368741 | None:intergenic | 20.0% |
| !! | AGTAAATTGTCTAAATGTTT+GGG | - | chr8_2:16367061-16367080 | None:intergenic | 20.0% |
| !! | AAGTAAATTGTCTAAATGTT+TGG | - | chr8_2:16367062-16367081 | None:intergenic | 20.0% |
| !! | AAACATTTAGACAATTTACT+TGG | + | chr8_2:16367061-16367080 | Msa1237100:CDS | 20.0% |
| !!! | TGTTTTTAGTTAATAGTTCA+CGG | + | chr8_2:16367666-16367685 | Msa1237100:intron | 20.0% |
| !! | ATTAGTATGATTTATTGAAG+TGG | + | chr8_2:16367714-16367733 | Msa1237100:intron | 20.0% |
| !! | CGCAATTAAAATAAAAACAA+AGG | - | chr8_2:16367914-16367933 | None:intergenic | 20.0% |
| !!! | TTTTAACATTACTTTTGTGT+CGG | - | chr8_2:16368240-16368259 | None:intergenic | 20.0% |
| !! | ATGTTAAAATTACTTAAAGC+TGG | + | chr8_2:16368251-16368270 | Msa1237100:intron | 20.0% |
| !! | TGTTAAAATTACTTAAAGCT+GGG | + | chr8_2:16368252-16368271 | Msa1237100:intron | 20.0% |
| !! | TCATTAATCAAATATCAAAG+GGG | - | chr8_2:16368653-16368672 | None:intergenic | 20.0% |
| !! | CAAACTGTATAAATCAAAAT+CGG | - | chr8_2:16368722-16368741 | None:intergenic | 20.0% |
| ! | TATATAGACAACCTTGTTAA+TGG | - | chr8_2:16366691-16366710 | None:intergenic | 25.0% |
| !!! | CTTTTTTTCCTTCAGATATA+AGG | + | chr8_2:16366796-16366815 | Msa1237100:intron | 25.0% |
| ! | TATGTAGTAACTTTGTCTAT+AGG | + | chr8_2:16366973-16366992 | Msa1237100:intron | 25.0% |
| !! | AACTTTGTCTATAGGAATTT+TGG | + | chr8_2:16366981-16367000 | Msa1237100:intron | 25.0% |
| !! | AAATGTTTGGGATATATCAT+AGG | - | chr8_2:16367049-16367068 | None:intergenic | 25.0% |
| ! | TTAAACTCTAATGATTGAGT+TGG | - | chr8_2:16367350-16367369 | None:intergenic | 25.0% |
| ! | GTCTTAATATTTGATTCAAG+TGG | + | chr8_2:16367459-16367478 | Msa1237100:intron | 25.0% |
| ! | CGCAATTAAAATCAAAACAA+AGG | - | chr8_2:16367523-16367542 | None:intergenic | 25.0% |
| ! | GTCTTAATATTTGATTCAAG+TGG | + | chr8_2:16367459-16367478 | Msa1237100:intron | 25.0% |
| !!! | TCACGTTTTAATGTTTGATT+TGG | + | chr8_2:16368074-16368093 | Msa1237100:intron | 25.0% |
| ! | TCGATTAGTATGATTTATTG+AGG | + | chr8_2:16367711-16367730 | Msa1237100:intron | 25.0% |
| !!! | AGCAGAAGTATTTCATATAT+AGG | + | chr8_2:16368335-16368354 | Msa1237100:intron | 25.0% |
| ! | AAGTATTTCATATATAGGTC+TGG | + | chr8_2:16368340-16368359 | Msa1237100:intron | 25.0% |
| !!! | TTTTTTTTGCAAAACTCAGA+AGG | + | chr8_2:16368495-16368514 | Msa1237100:intron | 25.0% |
| ! | TATATAGACAACCTTGTTAA+TGG | - | chr8_2:16366691-16366710 | None:intergenic | 25.0% |
| !!! | CTTTTTTTCCTTCAGATATA+AGG | + | chr8_2:16366796-16366815 | Msa1237100:intron | 25.0% |
| ! | TATGTAGTAACTTTGTCTAT+AGG | + | chr8_2:16366973-16366992 | Msa1237100:intron | 25.0% |
| !! | AACTTTGTCTATAGGAATTT+TGG | + | chr8_2:16366981-16367000 | Msa1237100:intron | 25.0% |
| !! | AAATGTTTGGGATATATCAT+AGG | - | chr8_2:16367049-16367068 | None:intergenic | 25.0% |
| ! | TTAAACTCTAATGATTGAGT+TGG | - | chr8_2:16367350-16367369 | None:intergenic | 25.0% |
| ! | GTCTTAATATTTGATTCAAG+TGG | + | chr8_2:16367459-16367478 | Msa1237100:intron | 25.0% |
| ! | CGCAATTAAAATCAAAACAA+AGG | - | chr8_2:16367523-16367542 | None:intergenic | 25.0% |
| ! | GTCTTAATATTTGATTCAAG+TGG | + | chr8_2:16367459-16367478 | Msa1237100:intron | 25.0% |
| !!! | TCACGTTTTAATGTTTGATT+TGG | + | chr8_2:16368074-16368093 | Msa1237100:intron | 25.0% |
| ! | TCGATTAGTATGATTTATTG+AGG | + | chr8_2:16367711-16367730 | Msa1237100:intron | 25.0% |
| !!! | AGCAGAAGTATTTCATATAT+AGG | + | chr8_2:16368335-16368354 | Msa1237100:intron | 25.0% |
| ! | AAGTATTTCATATATAGGTC+TGG | + | chr8_2:16368340-16368359 | Msa1237100:intron | 25.0% |
| !!! | TTTTTTTTGCAAAACTCAGA+AGG | + | chr8_2:16368495-16368514 | Msa1237100:intron | 25.0% |
| AAGTTTAATCCTAATCAGAG+TGG | + | chr8_2:16366574-16366593 | Msa1237100:CDS | 30.0% | |
| ATGTTGAAGTTCCATTAACA+AGG | + | chr8_2:16366677-16366696 | Msa1237100:CDS | 30.0% | |
| !!! | TGTGATTAGTTGATAGCTTT+TGG | + | chr8_2:16366719-16366738 | Msa1237100:intron | 30.0% |
| !!! | TTAGTTGATAGCTTTTGGTT+TGG | + | chr8_2:16366724-16366743 | Msa1237100:intron | 30.0% |
| ! | TTTTTCCTTCAGATATAAGG+TGG | + | chr8_2:16366799-16366818 | Msa1237100:intron | 30.0% |
| ! | TGTGTATGATGGTGATAAAT+CGG | + | chr8_2:16366832-16366851 | Msa1237100:CDS | 30.0% |
| ! | ATAAATCGGACTTTGTGTTT+TGG | + | chr8_2:16366846-16366865 | Msa1237100:CDS | 30.0% |
| ! | TAAATCGGACTTTGTGTTTT+GGG | + | chr8_2:16366847-16366866 | Msa1237100:CDS | 30.0% |
| AATCAAATTTACCTCTTGCA+TGG | - | chr8_2:16366924-16366943 | None:intergenic | 30.0% | |
| ATAATTGTGTTTGTTCCTGA+AGG | + | chr8_2:16367009-16367028 | Msa1237100:intron | 30.0% | |
| TATTTGATTCAAGTGGTAGT+AGG | + | chr8_2:16367466-16367485 | Msa1237100:intron | 30.0% | |
| TCACGGTTTAATGTTTCATT+TGG | + | chr8_2:16367683-16367702 | Msa1237100:intron | 30.0% | |
| TATTTGATTCAAGTGGTAGT+AGG | + | chr8_2:16367466-16367485 | Msa1237100:intron | 30.0% | |
| GGTGATAAGTTATGATAGAT+TGG | + | chr8_2:16368123-16368142 | Msa1237100:intron | 30.0% | |
| !! | TTATGATAGATTGGTTTCCT+TGG | + | chr8_2:16368132-16368151 | Msa1237100:intron | 30.0% |
| TTTCATATATAGGTCTGGTA+AGG | + | chr8_2:16368345-16368364 | Msa1237100:intron | 30.0% | |
| CTAATCAAGTTAAACCCAAA+AGG | + | chr8_2:16368402-16368421 | Msa1237100:intron | 30.0% | |
| AAAGGTTGTGACTCATATAT+AGG | + | chr8_2:16368552-16368571 | Msa1237100:intron | 30.0% | |
| ACTGATAAGGAAATTGTTTG+TGG | + | chr8_2:16368617-16368636 | Msa1237100:intron | 30.0% | |
| AAGTTTAATCCTAATCAGAG+TGG | + | chr8_2:16366574-16366593 | Msa1237100:CDS | 30.0% | |
| ATGTTGAAGTTCCATTAACA+AGG | + | chr8_2:16366677-16366696 | Msa1237100:CDS | 30.0% | |
| !!! | TGTGATTAGTTGATAGCTTT+TGG | + | chr8_2:16366719-16366738 | Msa1237100:intron | 30.0% |
| !!! | TTAGTTGATAGCTTTTGGTT+TGG | + | chr8_2:16366724-16366743 | Msa1237100:intron | 30.0% |
| ! | TTTTTCCTTCAGATATAAGG+TGG | + | chr8_2:16366799-16366818 | Msa1237100:intron | 30.0% |
| ! | TGTGTATGATGGTGATAAAT+CGG | + | chr8_2:16366832-16366851 | Msa1237100:CDS | 30.0% |
| ! | ATAAATCGGACTTTGTGTTT+TGG | + | chr8_2:16366846-16366865 | Msa1237100:CDS | 30.0% |
| ! | TAAATCGGACTTTGTGTTTT+GGG | + | chr8_2:16366847-16366866 | Msa1237100:CDS | 30.0% |
| AATCAAATTTACCTCTTGCA+TGG | - | chr8_2:16366924-16366943 | None:intergenic | 30.0% | |
| ATAATTGTGTTTGTTCCTGA+AGG | + | chr8_2:16367009-16367028 | Msa1237100:intron | 30.0% | |
| TATTTGATTCAAGTGGTAGT+AGG | + | chr8_2:16367466-16367485 | Msa1237100:intron | 30.0% | |
| TCACGGTTTAATGTTTCATT+TGG | + | chr8_2:16367683-16367702 | Msa1237100:intron | 30.0% | |
| TATTTGATTCAAGTGGTAGT+AGG | + | chr8_2:16367466-16367485 | Msa1237100:intron | 30.0% | |
| GGTGATAAGTTATGATAGAT+TGG | + | chr8_2:16368123-16368142 | Msa1237100:intron | 30.0% | |
| !! | TTATGATAGATTGGTTTCCT+TGG | + | chr8_2:16368132-16368151 | Msa1237100:intron | 30.0% |
| TTTCATATATAGGTCTGGTA+AGG | + | chr8_2:16368345-16368364 | Msa1237100:intron | 30.0% | |
| CTAATCAAGTTAAACCCAAA+AGG | + | chr8_2:16368402-16368421 | Msa1237100:intron | 30.0% | |
| AAAGGTTGTGACTCATATAT+AGG | + | chr8_2:16368552-16368571 | Msa1237100:intron | 30.0% | |
| ACTGATAAGGAAATTGTTTG+TGG | + | chr8_2:16368617-16368636 | Msa1237100:intron | 30.0% | |
| AAGGAATGTCTTCAGATTCT+TGG | + | chr8_2:16366872-16366891 | Msa1237100:CDS | 35.0% | |
| !! | CAATTTACTTGGTCTTGAGT+TGG | + | chr8_2:16367072-16367091 | Msa1237100:CDS | 35.0% |
| TTAATTCTCTGAATCACAGC+AGG | - | chr8_2:16367160-16367179 | None:intergenic | 35.0% | |
| TGTTAACATACCTCAGAAAC+TGG | - | chr8_2:16367633-16367652 | None:intergenic | 35.0% | |
| TGTTAACATACCTCAGAAAC+TGG | - | chr8_2:16367633-16367652 | None:intergenic | 35.0% | |
| TATAGGTCTGGTAAGGAAAT+TGG | + | chr8_2:16368352-16368371 | Msa1237100:intron | 35.0% | |
| TTGTGACTCATATATAGGTC+TGG | + | chr8_2:16368557-16368576 | Msa1237100:intron | 35.0% | |
| ! | TTTTTCGCTCTTGTGTTAAC+AGG | + | chr8_2:16368762-16368781 | Msa1237100:intron | 35.0% |
| ! | TTTTCGCTCTTGTGTTAACA+GGG | + | chr8_2:16368763-16368782 | Msa1237100:intron | 35.0% |
| TTAACGGAAGATAACTGTGT+TGG | - | chr8_2:16368910-16368929 | None:intergenic | 35.0% | |
| ACAGTTATCTTCCGTTAAGT+TGG | + | chr8_2:16368912-16368931 | Msa1237100:CDS | 35.0% | |
| AGTGCATTTAGCCAACTTAA+CGG | - | chr8_2:16368926-16368945 | None:intergenic | 35.0% | |
| AAGGAATGTCTTCAGATTCT+TGG | + | chr8_2:16366872-16366891 | Msa1237100:CDS | 35.0% | |
| !! | CAATTTACTTGGTCTTGAGT+TGG | + | chr8_2:16367072-16367091 | Msa1237100:CDS | 35.0% |
| TTAATTCTCTGAATCACAGC+AGG | - | chr8_2:16367160-16367179 | None:intergenic | 35.0% | |
| TGTTAACATACCTCAGAAAC+TGG | - | chr8_2:16367633-16367652 | None:intergenic | 35.0% | |
| TGTTAACATACCTCAGAAAC+TGG | - | chr8_2:16367633-16367652 | None:intergenic | 35.0% | |
| TATAGGTCTGGTAAGGAAAT+TGG | + | chr8_2:16368352-16368371 | Msa1237100:intron | 35.0% | |
| TTGTGACTCATATATAGGTC+TGG | + | chr8_2:16368557-16368576 | Msa1237100:intron | 35.0% | |
| ! | TTTTTCGCTCTTGTGTTAAC+AGG | + | chr8_2:16368762-16368781 | Msa1237100:intron | 35.0% |
| ! | TTTTCGCTCTTGTGTTAACA+GGG | + | chr8_2:16368763-16368782 | Msa1237100:intron | 35.0% |
| TTAACGGAAGATAACTGTGT+TGG | - | chr8_2:16368910-16368929 | None:intergenic | 35.0% | |
| ACAGTTATCTTCCGTTAAGT+TGG | + | chr8_2:16368912-16368931 | Msa1237100:CDS | 35.0% | |
| AGTGCATTTAGCCAACTTAA+CGG | - | chr8_2:16368926-16368945 | None:intergenic | 35.0% | |
| TTAATCCTAATCAGAGTGGC+TGG | + | chr8_2:16366578-16366597 | Msa1237100:CDS | 40.0% | |
| TAATACCAGCCACTCTGATT+AGG | - | chr8_2:16366586-16366605 | None:intergenic | 40.0% | |
| CTATAAATGCACATGTGGAG+AGG | + | chr8_2:16366654-16366673 | Msa1237100:CDS | 40.0% | |
| CACAACCACCTTATATCTGA+AGG | - | chr8_2:16366807-16366826 | None:intergenic | 40.0% | |
| GTTGTGCAAGTTGTGTATGA+TGG | + | chr8_2:16366821-16366840 | Msa1237100:CDS | 40.0% | |
| TCTTAGAAAGACCATGCAAG+AGG | + | chr8_2:16366910-16366929 | Msa1237100:CDS | 40.0% | |
| TTGTGTTTGTTCCTGAAGGT+TGG | + | chr8_2:16367013-16367032 | Msa1237100:intron | 40.0% | |
| ACAGATGACTGACGATAATG+TGG | - | chr8_2:16367118-16367137 | None:intergenic | 40.0% | |
| AGATGTACAAGAAGTTGACG+AGG | + | chr8_2:16367210-16367229 | Msa1237100:intron | 40.0% | |
| AAAAGTAACTCCAGTTGCTG+TGG | + | chr8_2:16367397-16367416 | Msa1237100:CDS | 40.0% | |
| ATAAACCATACCACAGCAAC+TGG | - | chr8_2:16367410-16367429 | None:intergenic | 40.0% | |
| GCGTTGTGCTAGAATATTGT+CGG | + | chr8_2:16367540-16367559 | Msa1237100:intron | 40.0% | |
| CAAATCAGTTCCAGTTTCTG+AGG | + | chr8_2:16367620-16367639 | Msa1237100:intron | 40.0% | |
| AAAAGTAACTCCAGTTGCTG+TGG | + | chr8_2:16367397-16367416 | Msa1237100:CDS | 40.0% | |
| ATAAACCATACCACAGCAAC+TGG | - | chr8_2:16367410-16367429 | None:intergenic | 40.0% | |
| GCGTTGTGCTAGAATATTGT+CGG | + | chr8_2:16367540-16367559 | Msa1237100:intron | 40.0% | |
| CAAATCAGTTCCAGTTTCTG+AGG | + | chr8_2:16367620-16367639 | Msa1237100:intron | 40.0% | |
| ATGAAACCTTTACCCAGTGT+AGG | + | chr8_2:16368276-16368295 | Msa1237100:intron | 40.0% | |
| TTCCACATGAGGTCCTAATT+GGG | + | chr8_2:16368302-16368321 | Msa1237100:intron | 40.0% | |
| GCTATGATATCACCCCAATT+AGG | - | chr8_2:16368318-16368337 | None:intergenic | 40.0% | |
| AAGTTAAACCCAAAAGGCAG+TGG | + | chr8_2:16368408-16368427 | Msa1237100:intron | 40.0% | |
| AGTTAAACCCAAAAGGCAGT+GGG | + | chr8_2:16368409-16368428 | Msa1237100:intron | 40.0% | |
| ACTTCTGCTCAATGTCTGAA+AGG | + | chr8_2:16368534-16368553 | Msa1237100:intron | 40.0% | |
| ! | ATATAGGTCTGGCTTCTGAA+AGG | + | chr8_2:16368568-16368587 | Msa1237100:intron | 40.0% |
| ! | GGCTTCTGAAAGGTTTAACT+TGG | + | chr8_2:16368578-16368597 | Msa1237100:intron | 40.0% |
| GTACTCACATGTGACTGATA+AGG | + | chr8_2:16368604-16368623 | Msa1237100:intron | 40.0% | |
| TTTCGCTCTTGTGTTAACAG+GGG | + | chr8_2:16368764-16368783 | Msa1237100:intron | 40.0% | |
| AAAAGTGGTCTGGATCAAAG+TGG | + | chr8_2:16368805-16368824 | Msa1237100:CDS | 40.0% | |
| TTAATCCTAATCAGAGTGGC+TGG | + | chr8_2:16366578-16366597 | Msa1237100:CDS | 40.0% | |
| TAATACCAGCCACTCTGATT+AGG | - | chr8_2:16366586-16366605 | None:intergenic | 40.0% | |
| CTATAAATGCACATGTGGAG+AGG | + | chr8_2:16366654-16366673 | Msa1237100:CDS | 40.0% | |
| CACAACCACCTTATATCTGA+AGG | - | chr8_2:16366807-16366826 | None:intergenic | 40.0% | |
| GTTGTGCAAGTTGTGTATGA+TGG | + | chr8_2:16366821-16366840 | Msa1237100:CDS | 40.0% | |
| TCTTAGAAAGACCATGCAAG+AGG | + | chr8_2:16366910-16366929 | Msa1237100:CDS | 40.0% | |
| TTGTGTTTGTTCCTGAAGGT+TGG | + | chr8_2:16367013-16367032 | Msa1237100:intron | 40.0% | |
| ACAGATGACTGACGATAATG+TGG | - | chr8_2:16367118-16367137 | None:intergenic | 40.0% | |
| AGATGTACAAGAAGTTGACG+AGG | + | chr8_2:16367210-16367229 | Msa1237100:intron | 40.0% | |
| AAAAGTAACTCCAGTTGCTG+TGG | + | chr8_2:16367397-16367416 | Msa1237100:CDS | 40.0% | |
| ATAAACCATACCACAGCAAC+TGG | - | chr8_2:16367410-16367429 | None:intergenic | 40.0% | |
| GCGTTGTGCTAGAATATTGT+CGG | + | chr8_2:16367540-16367559 | Msa1237100:intron | 40.0% | |
| CAAATCAGTTCCAGTTTCTG+AGG | + | chr8_2:16367620-16367639 | Msa1237100:intron | 40.0% | |
| AAAAGTAACTCCAGTTGCTG+TGG | + | chr8_2:16367397-16367416 | Msa1237100:CDS | 40.0% | |
| ATAAACCATACCACAGCAAC+TGG | - | chr8_2:16367410-16367429 | None:intergenic | 40.0% | |
| GCGTTGTGCTAGAATATTGT+CGG | + | chr8_2:16367540-16367559 | Msa1237100:intron | 40.0% | |
| CAAATCAGTTCCAGTTTCTG+AGG | + | chr8_2:16367620-16367639 | Msa1237100:intron | 40.0% | |
| ATGAAACCTTTACCCAGTGT+AGG | + | chr8_2:16368276-16368295 | Msa1237100:intron | 40.0% | |
| TTCCACATGAGGTCCTAATT+GGG | + | chr8_2:16368302-16368321 | Msa1237100:intron | 40.0% | |
| GCTATGATATCACCCCAATT+AGG | - | chr8_2:16368318-16368337 | None:intergenic | 40.0% | |
| AAGTTAAACCCAAAAGGCAG+TGG | + | chr8_2:16368408-16368427 | Msa1237100:intron | 40.0% | |
| AGTTAAACCCAAAAGGCAGT+GGG | + | chr8_2:16368409-16368428 | Msa1237100:intron | 40.0% | |
| ACTTCTGCTCAATGTCTGAA+AGG | + | chr8_2:16368534-16368553 | Msa1237100:intron | 40.0% | |
| ! | ATATAGGTCTGGCTTCTGAA+AGG | + | chr8_2:16368568-16368587 | Msa1237100:intron | 40.0% |
| ! | GGCTTCTGAAAGGTTTAACT+TGG | + | chr8_2:16368578-16368597 | Msa1237100:intron | 40.0% |
| GTACTCACATGTGACTGATA+AGG | + | chr8_2:16368604-16368623 | Msa1237100:intron | 40.0% | |
| TTTCGCTCTTGTGTTAACAG+GGG | + | chr8_2:16368764-16368783 | Msa1237100:intron | 40.0% | |
| AAAAGTGGTCTGGATCAAAG+TGG | + | chr8_2:16368805-16368824 | Msa1237100:CDS | 40.0% | |
| !! | CCTTGAAGGCTTTGGACATT+TGG | - | chr8_2:16366620-16366639 | None:intergenic | 45.0% |
| CCAAATGTCCAAAGCCTTCA+AGG | + | chr8_2:16366617-16366636 | Msa1237100:CDS | 45.0% | |
| CCATTTGACCTTGAAGGCTT+TGG | - | chr8_2:16366628-16366647 | None:intergenic | 45.0% | |
| CCAAAGCCTTCAAGGTCAAA+TGG | + | chr8_2:16366625-16366644 | Msa1237100:CDS | 45.0% | |
| GCTGGCTATAAATGCACATG+TGG | + | chr8_2:16366649-16366668 | Msa1237100:CDS | 45.0% | |
| !!! | GGACTTTGTGTTTTGGGACA+AGG | + | chr8_2:16366853-16366872 | Msa1237100:CDS | 45.0% |
| GATCATCTTCACCAACCTTC+AGG | - | chr8_2:16367027-16367046 | None:intergenic | 45.0% | |
| TATCGTCAGTCATCTGTGCA+AGG | + | chr8_2:16367121-16367140 | Msa1237100:CDS | 45.0% | |
| ACTGCATACCATCAGGATGA+AGG | - | chr8_2:16367189-16367208 | None:intergenic | 45.0% | |
| ACATCTGACTGCATACCATC+AGG | - | chr8_2:16367196-16367215 | None:intergenic | 45.0% | |
| TAACTCCAGTTGCTGTGGTA+TGG | + | chr8_2:16367402-16367421 | Msa1237100:intron | 45.0% | |
| TAACTCCAGTTGCTGTGGTA+TGG | + | chr8_2:16367402-16367421 | Msa1237100:intron | 45.0% | |
| ! | CTGACTGATTCAAAGTGCCA+AGG | - | chr8_2:16368152-16368171 | None:intergenic | 45.0% |
| TGGCACTTTGAATCAGTCAG+AGG | + | chr8_2:16368152-16368171 | Msa1237100:intron | 45.0% | |
| ! | GAAGTACCTACACTGGGTAA+AGG | - | chr8_2:16368285-16368304 | None:intergenic | 45.0% |
| !! | CATGTGGAAGTACCTACACT+GGG | - | chr8_2:16368291-16368310 | None:intergenic | 45.0% |
| !! | TCATGTGGAAGTACCTACAC+TGG | - | chr8_2:16368292-16368311 | None:intergenic | 45.0% |
| AGTGTAGGTACTTCCACATG+AGG | + | chr8_2:16368291-16368310 | Msa1237100:intron | 45.0% | |
| CTTCCACATGAGGTCCTAAT+TGG | + | chr8_2:16368301-16368320 | Msa1237100:intron | 45.0% | |
| TCCACATGAGGTCCTAATTG+GGG | + | chr8_2:16368303-16368322 | Msa1237100:intron | 45.0% | |
| GTCTGGTAAGGAAATTGGTC+TGG | + | chr8_2:16368357-16368376 | Msa1237100:intron | 45.0% | |
| TTGCAAAACTCAGAAGGCAG+AGG | + | chr8_2:16368501-16368520 | Msa1237100:intron | 45.0% | |
| TGCAAAACTCAGAAGGCAGA+GGG | + | chr8_2:16368502-16368521 | Msa1237100:intron | 45.0% | |
| GTTTCTGTGAGTGGGAAAAG+TGG | + | chr8_2:16368790-16368809 | Msa1237100:CDS | 45.0% | |
| TCAGCAAATGAACGTCTTGC+AGG | - | chr8_2:16368850-16368869 | None:intergenic | 45.0% | |
| ! | GTTGGCTAAATGCACTGACA+AGG | + | chr8_2:16368930-16368949 | Msa1237100:CDS | 45.0% |
| ! | AAATGCACTGACAAGGAGTG+AGG | + | chr8_2:16368937-16368956 | Msa1237100:CDS | 45.0% |
| !! | CCTTGAAGGCTTTGGACATT+TGG | - | chr8_2:16366620-16366639 | None:intergenic | 45.0% |
| CCAAATGTCCAAAGCCTTCA+AGG | + | chr8_2:16366617-16366636 | Msa1237100:CDS | 45.0% | |
| CCATTTGACCTTGAAGGCTT+TGG | - | chr8_2:16366628-16366647 | None:intergenic | 45.0% | |
| CCAAAGCCTTCAAGGTCAAA+TGG | + | chr8_2:16366625-16366644 | Msa1237100:CDS | 45.0% | |
| GCTGGCTATAAATGCACATG+TGG | + | chr8_2:16366649-16366668 | Msa1237100:CDS | 45.0% | |
| !!! | GGACTTTGTGTTTTGGGACA+AGG | + | chr8_2:16366853-16366872 | Msa1237100:CDS | 45.0% |
| GATCATCTTCACCAACCTTC+AGG | - | chr8_2:16367027-16367046 | None:intergenic | 45.0% | |
| TATCGTCAGTCATCTGTGCA+AGG | + | chr8_2:16367121-16367140 | Msa1237100:CDS | 45.0% | |
| ACTGCATACCATCAGGATGA+AGG | - | chr8_2:16367189-16367208 | None:intergenic | 45.0% | |
| ACATCTGACTGCATACCATC+AGG | - | chr8_2:16367196-16367215 | None:intergenic | 45.0% | |
| TAACTCCAGTTGCTGTGGTA+TGG | + | chr8_2:16367402-16367421 | Msa1237100:intron | 45.0% | |
| TAACTCCAGTTGCTGTGGTA+TGG | + | chr8_2:16367402-16367421 | Msa1237100:intron | 45.0% | |
| ! | CTGACTGATTCAAAGTGCCA+AGG | - | chr8_2:16368152-16368171 | None:intergenic | 45.0% |
| TGGCACTTTGAATCAGTCAG+AGG | + | chr8_2:16368152-16368171 | Msa1237100:intron | 45.0% | |
| ! | GAAGTACCTACACTGGGTAA+AGG | - | chr8_2:16368285-16368304 | None:intergenic | 45.0% |
| !! | CATGTGGAAGTACCTACACT+GGG | - | chr8_2:16368291-16368310 | None:intergenic | 45.0% |
| !! | TCATGTGGAAGTACCTACAC+TGG | - | chr8_2:16368292-16368311 | None:intergenic | 45.0% |
| AGTGTAGGTACTTCCACATG+AGG | + | chr8_2:16368291-16368310 | Msa1237100:intron | 45.0% | |
| CTTCCACATGAGGTCCTAAT+TGG | + | chr8_2:16368301-16368320 | Msa1237100:intron | 45.0% | |
| TCCACATGAGGTCCTAATTG+GGG | + | chr8_2:16368303-16368322 | Msa1237100:intron | 45.0% | |
| GTCTGGTAAGGAAATTGGTC+TGG | + | chr8_2:16368357-16368376 | Msa1237100:intron | 45.0% | |
| TTGCAAAACTCAGAAGGCAG+AGG | + | chr8_2:16368501-16368520 | Msa1237100:intron | 45.0% | |
| TGCAAAACTCAGAAGGCAGA+GGG | + | chr8_2:16368502-16368521 | Msa1237100:intron | 45.0% | |
| GTTTCTGTGAGTGGGAAAAG+TGG | + | chr8_2:16368790-16368809 | Msa1237100:CDS | 45.0% | |
| TCAGCAAATGAACGTCTTGC+AGG | - | chr8_2:16368850-16368869 | None:intergenic | 45.0% | |
| ! | GTTGGCTAAATGCACTGACA+AGG | + | chr8_2:16368930-16368949 | Msa1237100:CDS | 45.0% |
| CCAGCACCATTTGACCTTGA+AGG | - | chr8_2:16366634-16366653 | None:intergenic | 50.0% | |
| CCTTCAAGGTCAAATGGTGC+TGG | + | chr8_2:16366631-16366650 | Msa1237100:CDS | 50.0% | |
| AAGCGTCACCTTCATCCTGA+TGG | + | chr8_2:16367178-16367197 | Msa1237100:CDS | 50.0% | |
| ACCCCAATTAGGACCTCATG+TGG | - | chr8_2:16368307-16368326 | None:intergenic | 50.0% | |
| ! | TTCCAGACCCACTGCCTTTT+GGG | - | chr8_2:16368419-16368438 | None:intergenic | 50.0% |
| ! | TTTCCAGACCCACTGCCTTT+TGG | - | chr8_2:16368420-16368439 | None:intergenic | 50.0% |
| !! | AGGGGTCTGTTTCTGTGAGT+GGG | + | chr8_2:16368782-16368801 | Msa1237100:intron | 50.0% |
| TGTGAGTGGGAAAAGTGGTC+TGG | + | chr8_2:16368795-16368814 | Msa1237100:CDS | 50.0% | |
| GTGGTCTGGATCAAAGTGGT+AGG | + | chr8_2:16368809-16368828 | Msa1237100:CDS | 50.0% | |
| CCAGCACCATTTGACCTTGA+AGG | - | chr8_2:16366634-16366653 | None:intergenic | 50.0% | |
| CCTTCAAGGTCAAATGGTGC+TGG | + | chr8_2:16366631-16366650 | Msa1237100:CDS | 50.0% | |
| AAGCGTCACCTTCATCCTGA+TGG | + | chr8_2:16367178-16367197 | Msa1237100:CDS | 50.0% | |
| ACCCCAATTAGGACCTCATG+TGG | - | chr8_2:16368307-16368326 | None:intergenic | 50.0% | |
| ! | TTCCAGACCCACTGCCTTTT+GGG | - | chr8_2:16368419-16368438 | None:intergenic | 50.0% |
| ! | TTTCCAGACCCACTGCCTTT+TGG | - | chr8_2:16368420-16368439 | None:intergenic | 50.0% |
| !! | AGGGGTCTGTTTCTGTGAGT+GGG | + | chr8_2:16368782-16368801 | Msa1237100:intron | 50.0% |
| TGTGAGTGGGAAAAGTGGTC+TGG | + | chr8_2:16368795-16368814 | Msa1237100:CDS | 50.0% | |
| GTGGTCTGGATCAAAGTGGT+AGG | + | chr8_2:16368809-16368828 | Msa1237100:CDS | 50.0% | |
| AACCCAAAAGGCAGTGGGTC+TGG | + | chr8_2:16368414-16368433 | Msa1237100:intron | 55.0% | |
| !! | CAGGGGTCTGTTTCTGTGAG+TGG | + | chr8_2:16368781-16368800 | Msa1237100:intron | 55.0% |
| AACCCAAAAGGCAGTGGGTC+TGG | + | chr8_2:16368414-16368433 | Msa1237100:intron | 55.0% | |
| !! | CAGGGGTCTGTTTCTGTGAG+TGG | + | chr8_2:16368781-16368800 | Msa1237100:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 16366562 | 16368957 | 16366562 | ID=Msa1237100;Name=Msa1237100 |
| chr8_2 | mRNA | 16366562 | 16368957 | 16366562 | ID=Msa1237100-mRNA-1;Parent=Msa1237100;Name=Msa1237100-mRNA-1;_AED=0.09;_eAED=0.11;_QI=0|0.4|0.33|1|0.6|0.66|6|0|264 |
| chr8_2 | exon | 16366562 | 16366698 | 16366562 | ID=Msa1237100-mRNA-1:exon:6111;Parent=Msa1237100-mRNA-1 |
| chr8_2 | exon | 16366811 | 16366931 | 16366811 | ID=Msa1237100-mRNA-1:exon:6112;Parent=Msa1237100-mRNA-1 |
| chr8_2 | exon | 16367031 | 16367213 | 16367031 | ID=Msa1237100-mRNA-1:exon:6113;Parent=Msa1237100-mRNA-1 |
| chr8_2 | exon | 16367329 | 16367418 | 16367329 | ID=Msa1237100-mRNA-1:exon:6114;Parent=Msa1237100-mRNA-1 |
| chr8_2 | exon | 16367943 | 16368032 | 16367943 | ID=Msa1237100-mRNA-1:exon:6115;Parent=Msa1237100-mRNA-1 |
| chr8_2 | exon | 16368784 | 16368957 | 16368784 | ID=Msa1237100-mRNA-1:exon:6116;Parent=Msa1237100-mRNA-1 |
| chr8_2 | CDS | 16366562 | 16366698 | 16366562 | ID=Msa1237100-mRNA-1:cds;Parent=Msa1237100-mRNA-1 |
| chr8_2 | CDS | 16366811 | 16366931 | 16366811 | ID=Msa1237100-mRNA-1:cds;Parent=Msa1237100-mRNA-1 |
| chr8_2 | CDS | 16367031 | 16367213 | 16367031 | ID=Msa1237100-mRNA-1:cds;Parent=Msa1237100-mRNA-1 |
| chr8_2 | CDS | 16367329 | 16367418 | 16367329 | ID=Msa1237100-mRNA-1:cds;Parent=Msa1237100-mRNA-1 |
| chr8_2 | CDS | 16367943 | 16368032 | 16367943 | ID=Msa1237100-mRNA-1:cds;Parent=Msa1237100-mRNA-1 |
| chr8_2 | CDS | 16368784 | 16368957 | 16368784 | ID=Msa1237100-mRNA-1:cds;Parent=Msa1237100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
