Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807640 | ABO77440.1 | 99.430 | 351 | 2 | 0 | 51 | 401 | 3 | 353 | 0.0 | 722 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807640 | sp|Q9M4D8|DCAM_VICFA | 91.738 | 351 | 29 | 0 | 51 | 401 | 3 | 353 | 0.0 | 671 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807640 | A4ULG0 | 99.430 | 351 | 2 | 0 | 51 | 401 | 3 | 353 | 0.0 | 722 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0729290 | Msa0807640 | 0.919315 | 5.246310e-87 | -8.615850e-47 |
| Msa0807640 | Msa0807650 | 0.955560 | 2.288466e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807640 | MtrunA17_Chr4g0021521 | 99.145 | 351 | 3 | 0 | 51 | 401 | 3 | 353 | 0.0 | 719 |
| Msa0807640 | MtrunA17_Chr8g0368661 | 77.233 | 347 | 79 | 0 | 51 | 397 | 5 | 351 | 0.0 | 565 |
| Msa0807640 | MtrunA17_Chr7g0220781 | 69.477 | 344 | 103 | 2 | 52 | 394 | 6 | 348 | 3.51e-173 | 487 |
| Msa0807640 | MtrunA17_Chr7g0220841 | 69.186 | 344 | 104 | 2 | 52 | 394 | 6 | 348 | 4.32e-173 | 487 |
| Msa0807640 | MtrunA17_Chr4g0020181 | 69.186 | 344 | 104 | 2 | 52 | 394 | 6 | 348 | 1.35e-172 | 486 |
| Msa0807640 | MtrunA17_Chr7g0220811 | 75.543 | 184 | 45 | 0 | 52 | 235 | 6 | 189 | 6.71e-100 | 295 |
| Msa0807640 | MtrunA17_Chr4g0066361 | 42.105 | 342 | 173 | 8 | 55 | 378 | 5 | 339 | 1.66e-75 | 238 |
| Msa0807640 | MtrunA17_Chr2g0286961 | 41.880 | 351 | 165 | 10 | 55 | 379 | 5 | 342 | 7.31e-75 | 236 |
| Msa0807640 | MtrunA17_Chr7g0220821 | 63.380 | 142 | 50 | 2 | 254 | 394 | 1 | 141 | 2.56e-56 | 182 |
| Msa0807640 | MtrunA17_Chr4g0021531 | 100.000 | 30 | 0 | 0 | 20 | 49 | 19 | 48 | 7.81e-14 | 65.9 |
| Msa0807640 | MtrunA17_Chr8g0368651 | 71.429 | 49 | 10 | 1 | 1 | 49 | 1 | 45 | 6.96e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807640 | AT3G25570.2 | 71.802 | 344 | 94 | 2 | 51 | 391 | 3 | 346 | 5.29e-177 | 497 |
| Msa0807640 | AT3G25570.1 | 71.802 | 344 | 94 | 2 | 51 | 391 | 3 | 346 | 5.29e-177 | 497 |
| Msa0807640 | AT3G02470.4 | 66.379 | 348 | 113 | 4 | 51 | 394 | 3 | 350 | 4.06e-170 | 480 |
| Msa0807640 | AT3G02470.1 | 66.379 | 348 | 113 | 4 | 51 | 394 | 3 | 350 | 4.06e-170 | 480 |
| Msa0807640 | AT3G02470.3 | 66.379 | 348 | 113 | 4 | 51 | 394 | 3 | 350 | 4.06e-170 | 480 |
| Msa0807640 | AT5G15950.2 | 65.000 | 360 | 117 | 4 | 51 | 401 | 3 | 362 | 3.47e-168 | 475 |
| Msa0807640 | AT5G15950.1 | 65.000 | 360 | 117 | 4 | 51 | 401 | 3 | 362 | 3.47e-168 | 475 |
| Msa0807640 | AT5G18930.1 | 45.882 | 340 | 166 | 7 | 55 | 378 | 5 | 342 | 2.86e-87 | 268 |
| Msa0807640 | AT3G17717.1 | 49.107 | 112 | 55 | 2 | 227 | 337 | 17 | 127 | 8.36e-31 | 115 |
Find 102 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCACAGATCTGACTTTA+AGG | 0.158308 | 5_3:+30205160 | None:intergenic |
| AAGTCACATATTTCAGAATT+TGG | 0.203322 | 5_3:+30204820 | None:intergenic |
| CAGAGTAAACATGCCAATTC+TGG | 0.233926 | 5_3:+30204995 | None:intergenic |
| AGGCAGCACGGCTTATATTA+TGG | 0.244404 | 5_3:-30205034 | Msa0807640:CDS |
| AATCCCACCCATATTGAAAT+TGG | 0.267826 | 5_3:-30205196 | Msa0807640:CDS |
| CACCCATTCCAAGCCCTTCT+AGG | 0.285576 | 5_3:+30204524 | None:intergenic |
| TGGGATTGCAAGCAGTAATT+TGG | 0.289958 | 5_3:+30205212 | None:intergenic |
| CGTGAAGAGAGGAGCCTAGA+AGG | 0.310976 | 5_3:-30204538 | Msa0807640:CDS |
| GGACTCGGCCAATTTCAATA+TGG | 0.320655 | 5_3:+30205188 | None:intergenic |
| CGGCAGTCTTGACAAACTTT+TGG | 0.351241 | 5_3:+30204488 | None:intergenic |
| GGGTTGTTCGCTGGATGTTA+AGG | 0.371228 | 5_3:-30204569 | Msa0807640:CDS |
| TCTTGTAGGCATAAACAAAA+AGG | 0.372256 | 5_3:+30205259 | None:intergenic |
| AGATCTGACTTTAAGGGAAA+TGG | 0.377918 | 5_3:+30205167 | None:intergenic |
| GCCATGGCAGTTTCTGCAAT+TGG | 0.380504 | 5_3:-30205471 | Msa0807640:intron |
| GCATAACTGAACCCATCTTC+TGG | 0.388865 | 5_3:+30204727 | None:intergenic |
| GCTGTCCTTGATGGCTACTT+TGG | 0.400659 | 5_3:-30205069 | Msa0807640:CDS |
| ATCTCTCACAAAATCCCAAC+TGG | 0.403145 | 5_3:-30205367 | Msa0807640:CDS |
| GATGGCTACTTTGGAAAGCT+TGG | 0.406979 | 5_3:-30205060 | Msa0807640:CDS |
| CAGCACTTAAGTGTTGATCT+AGG | 0.408052 | 5_3:+30204454 | None:intergenic |
| ATGGCTACTTTGGAAAGCTT+GGG | 0.411273 | 5_3:-30205059 | Msa0807640:CDS |
| GAAGAAGTAGCTGTCCTTGA+TGG | 0.417679 | 5_3:-30205078 | Msa0807640:CDS |
| GGCAGCACGGCTTATATTAT+GGG | 0.419414 | 5_3:-30205033 | Msa0807640:CDS |
| TACTTTGGAAAGCTTGGGTC+AGG | 0.421656 | 5_3:-30205054 | Msa0807640:CDS |
| TGCAAGCAAGTCGTTTGAGC+AGG | 0.423080 | 5_3:-30204590 | Msa0807640:CDS |
| TTTCCTGATGCCAGAGTTCA+CGG | 0.425895 | 5_3:+30204849 | None:intergenic |
| GTGTGTAGACAGAGTCGTTT+GGG | 0.432980 | 5_3:+30204953 | None:intergenic |
| GATCCGATGAAGCCCAGAAT+TGG | 0.434903 | 5_3:-30205008 | Msa0807640:CDS |
| GGTTGTTCGCTGGATGTTAA+GGG | 0.435015 | 5_3:-30204568 | Msa0807640:CDS |
| CCTCACAGATCTGACTTTAA+GGG | 0.436074 | 5_3:+30205161 | None:intergenic |
| TGAAGGATTTGAAAAGAGGT+TGG | 0.442885 | 5_3:-30205445 | Msa0807640:CDS |
| ATTCATGTTACTCCAGAAGA+TGG | 0.452259 | 5_3:-30204739 | Msa0807640:CDS |
| GCCAGAGTTCACGGTCATCT+TGG | 0.454845 | 5_3:+30204858 | None:intergenic |
| ACAGCTACAGAAAACTCATT+TGG | 0.455280 | 5_3:+30204625 | None:intergenic |
| GTTTGAGCAGGGTTGTTCGC+TGG | 0.461205 | 5_3:-30204578 | Msa0807640:CDS |
| TAACAGACTGAATGAGCTAA+TGG | 0.469027 | 5_3:-30205957 | None:intergenic |
| GAGAGGAGCCTAGAAGGGCT+TGG | 0.469686 | 5_3:-30204532 | Msa0807640:CDS |
| GACAGAGTCGTTTGGGCTCA+CGG | 0.470139 | 5_3:+30204960 | None:intergenic |
| AGCAATGAATCTGAATGAAT+TGG | 0.470356 | 5_3:-30204674 | Msa0807640:CDS |
| AGTGGCGATGAGGGAAAGAC+TGG | 0.471304 | 5_3:+30205106 | None:intergenic |
| CAGTAATTTGGTAGTACCAC+AGG | 0.471609 | 5_3:+30205224 | None:intergenic |
| AGCCTAGAAGGGCTTGGAAT+GGG | 0.471610 | 5_3:-30204526 | Msa0807640:CDS |
| GACTCGGCCAATTTCAATAT+GGG | 0.472381 | 5_3:+30205189 | None:intergenic |
| TGACCGTGAACTCTGGCATC+AGG | 0.476580 | 5_3:-30204852 | Msa0807640:CDS |
| TATGCAAGCTTTGAGACTGC+TGG | 0.481178 | 5_3:-30204709 | Msa0807640:CDS |
| AGAGTAAACATGCCAATTCT+GGG | 0.482441 | 5_3:+30204996 | None:intergenic |
| ATCAAGGACAGCTACTTCTT+CGG | 0.483365 | 5_3:+30205080 | None:intergenic |
| AGTGTGTAGACAGAGTCGTT+TGG | 0.483944 | 5_3:+30204952 | None:intergenic |
| GAAACAATGGTGCACTCAGC+TGG | 0.491991 | 5_3:+30205330 | None:intergenic |
| CTACAGAAAACTCATTTGGT+TGG | 0.492466 | 5_3:+30204629 | None:intergenic |
| GACTTTAAGGGAAATGGACT+CGG | 0.492549 | 5_3:+30205173 | None:intergenic |
| TGACGATTTACTACTACTAC+TGG | 0.495409 | 5_3:+30205910 | None:intergenic |
| GCCAAGATGACCGTGAACTC+TGG | 0.501551 | 5_3:-30204859 | Msa0807640:CDS |
| TGAGGGAAAGACTGGGCACC+AGG | 0.502643 | 5_3:+30205114 | None:intergenic |
| CAGCTACTTCTTCGGAAAAG+TGG | 0.518616 | 5_3:+30205088 | None:intergenic |
| TGCAAGAATCTCATCCAGTT+GGG | 0.520638 | 5_3:+30205353 | None:intergenic |
| TGCTTTCTCTCTGTCTAAGC+CGG | 0.526097 | 5_3:+30204915 | None:intergenic |
| AACTTCTTGATTCCACCGTT+AGG | 0.527282 | 5_3:+30205836 | None:intergenic |
| TATTCAATGAATTCTGTTGA+GGG | 0.527553 | 5_3:-30204778 | Msa0807640:CDS |
| ACACTCGAGATGTGCATGAC+CGG | 0.532189 | 5_3:-30204934 | Msa0807640:CDS |
| CTAGATCAACACTTAAGTGC+TGG | 0.535337 | 5_3:-30204453 | Msa0807640:CDS |
| GTGCAAGAATCTCATCCAGT+TGG | 0.545202 | 5_3:+30205352 | None:intergenic |
| CTTCGGAAAAGTGGCGATGA+GGG | 0.545675 | 5_3:+30205097 | None:intergenic |
| ATCTTAAACCCCTCCCGTGA+GGG | 0.547240 | 5_3:+30205388 | None:intergenic |
| ATGCCAATTCTGGGCTTCAT+CGG | 0.548303 | 5_3:+30205005 | None:intergenic |
| GCTTTCCAAAGTAGCCATCA+AGG | 0.551420 | 5_3:+30205064 | None:intergenic |
| GTCTTCAATGCTGTATCCGA+GGG | 0.553166 | 5_3:+30205865 | None:intergenic |
| ATCTTCTGGAGTAACATGAA+TGG | 0.557011 | 5_3:+30204741 | None:intergenic |
| GAGCCTAGAAGGGCTTGGAA+TGG | 0.557133 | 5_3:-30204527 | Msa0807640:CDS |
| AATGAATCTGAATGAATTGG+TGG | 0.561345 | 5_3:-30204671 | Msa0807640:CDS |
| GTCAACATCGTCATTTGCTA+AGG | 0.561466 | 5_3:+30205305 | None:intergenic |
| TTCATGTTACTCCAGAAGAT+GGG | 0.561810 | 5_3:-30204738 | Msa0807640:CDS |
| TTATTCAATGAATTCTGTTG+AGG | 0.563786 | 5_3:-30204779 | Msa0807640:CDS |
| AATGAGCTAATGGAGTCTAA+AGG | 0.565907 | 5_3:-30205947 | Msa0807640:exon |
| CGGCCAATTTCAATATGGGT+GGG | 0.578309 | 5_3:+30205193 | None:intergenic |
| GTGAAGAGAGGAGCCTAGAA+GGG | 0.583585 | 5_3:-30204537 | Msa0807640:CDS |
| CTAGAAGGGCTTGGAATGGG+TGG | 0.585068 | 5_3:-30204523 | Msa0807640:CDS |
| GCAAGCAAGTCGTTTGAGCA+GGG | 0.585251 | 5_3:-30204589 | Msa0807640:CDS |
| ATTGAAGACATTCGTCCTAA+CGG | 0.595565 | 5_3:-30205851 | Msa0807640:CDS |
| TCGGCCAATTTCAATATGGG+TGG | 0.595661 | 5_3:+30205192 | None:intergenic |
| AAAGCTTGGGTCAGGCAGCA+CGG | 0.596517 | 5_3:-30205046 | Msa0807640:CDS |
| CTTAGACAGAGAGAAAGCAT+TGG | 0.606273 | 5_3:-30204911 | Msa0807640:CDS |
| TGTCTTCAATGCTGTATCCG+AGG | 0.610451 | 5_3:+30205864 | None:intergenic |
| TCTGAATGAATTGGTGGTGA+AGG | 0.612452 | 5_3:-30204665 | Msa0807640:CDS |
| AGGGATACTGTCGTGAAGAG+AGG | 0.619171 | 5_3:-30204549 | Msa0807640:CDS |
| TCTTCGGAAAAGTGGCGATG+AGG | 0.619318 | 5_3:+30205096 | None:intergenic |
| TTATTCTACGAAGCTCCCCT+CGG | 0.625181 | 5_3:-30205881 | Msa0807640:CDS |
| TGATCTAGGCGAGCCACAGT+CGG | 0.631715 | 5_3:+30204468 | None:intergenic |
| TTTGTCAAGACTGCCGACTG+TGG | 0.633166 | 5_3:-30204481 | Msa0807640:CDS |
| GAGCTAATGGAGTCTAAAGG+AGG | 0.647473 | 5_3:-30205944 | Msa0807640:exon |
| TGGGCTCACGGAATCTGCAG+AGG | 0.650938 | 5_3:+30204972 | None:intergenic |
| ATTTGCTAAGGAAGAAACAA+TGG | 0.659529 | 5_3:+30205317 | None:intergenic |
| GCTGGACTCAGACAGAACAT+AGG | 0.663634 | 5_3:+30205281 | None:intergenic |
| AGCACGGCTTATATTATGGG+TGG | 0.666611 | 5_3:-30205030 | Msa0807640:CDS |
| GATCTTAAACCCCTCCCGTG+AGG | 0.672665 | 5_3:+30205387 | None:intergenic |
| GTGGCGATGAGGGAAAGACT+GGG | 0.690654 | 5_3:+30205107 | None:intergenic |
| CCCTTAAAGTCAGATCTGTG+AGG | 0.691736 | 5_3:-30205161 | Msa0807640:CDS |
| AAGATCATAATCAAAACCTG+TGG | 0.691808 | 5_3:-30205240 | Msa0807640:CDS |
| GAAGACATTCGTCCTAACGG+TGG | 0.692317 | 5_3:-30205848 | Msa0807640:CDS |
| GAATTCATTGAATAACCACA+AGG | 0.720077 | 5_3:+30204787 | None:intergenic |
| AGGTGAATGAACACTCACGT+TGG | 0.738781 | 5_3:+30205796 | None:intergenic |
| AGATCTGTGAGGTACACCCG+AGG | 0.738828 | 5_3:-30205150 | Msa0807640:CDS |
| TCTTCAATGCTGTATCCGAG+GGG | 0.754164 | 5_3:+30205866 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTGGAAAAAAAAAAAAAT+AGG | + | chr5_3:30204683-30204702 | None:intergenic | 15.0% |
| !! | GTTTGGAAAAAAAAAAAAAT+AGG | + | chr5_3:30204683-30204702 | None:intergenic | 15.0% |
| !! | CCAAAATACATATATTATCA+AGG | + | chr5_3:30204610-30204629 | None:intergenic | 20.0% |
| !!! | CCTTGATAATATATGTATTT+TGG | - | chr5_3:30204607-30204626 | Msa0807640:CDS | 20.0% |
| !!! | AGCTTTTTTTGTTTTTGTTT+AGG | - | chr5_3:30204781-30204800 | Msa0807640:CDS | 20.0% |
| !! | CCAAAATACATATATTATCA+AGG | + | chr5_3:30204610-30204629 | None:intergenic | 20.0% |
| !!! | CCTTGATAATATATGTATTT+TGG | - | chr5_3:30204607-30204626 | Msa0807640:CDS | 20.0% |
| !!! | AGCTTTTTTTGTTTTTGTTT+AGG | - | chr5_3:30204781-30204800 | Msa0807640:CDS | 20.0% |
| !!! | TTTGGAAAGATGTATTTTGA+AGG | + | chr5_3:30204822-30204841 | None:intergenic | 25.0% |
| ! | AAGTCACATATTTCAGAATT+TGG | + | chr5_3:30205566-30205585 | None:intergenic | 25.0% |
| ! | TTATTCAATGAATTCTGTTG+AGG | - | chr5_3:30205604-30205623 | Msa0807640:intron | 25.0% |
| ! | TATTCAATGAATTCTGTTGA+GGG | - | chr5_3:30205605-30205624 | Msa0807640:intron | 25.0% |
| !!! | TTTGGAAAGATGTATTTTGA+AGG | + | chr5_3:30204822-30204841 | None:intergenic | 25.0% |
| ! | AAGTCACATATTTCAGAATT+TGG | + | chr5_3:30205566-30205585 | None:intergenic | 25.0% |
| ! | TTATTCAATGAATTCTGTTG+AGG | - | chr5_3:30205604-30205623 | Msa0807640:intron | 25.0% |
| ! | TATTCAATGAATTCTGTTGA+GGG | - | chr5_3:30205605-30205624 | Msa0807640:intron | 25.0% |
| !!! | GTTTTGAAGGATTTGAAAAG+AGG | - | chr5_3:30204934-30204953 | Msa0807640:CDS | 30.0% |
| ! | ATTTGCTAAGGAAGAAACAA+TGG | + | chr5_3:30205069-30205088 | None:intergenic | 30.0% |
| TCTTGTAGGCATAAACAAAA+AGG | + | chr5_3:30205127-30205146 | None:intergenic | 30.0% | |
| !!! | GGTTTTGATTATGATCTTGT+AGG | + | chr5_3:30205141-30205160 | None:intergenic | 30.0% |
| AAGATCATAATCAAAACCTG+TGG | - | chr5_3:30205143-30205162 | Msa0807640:CDS | 30.0% | |
| GAATTCATTGAATAACCACA+AGG | + | chr5_3:30205599-30205618 | None:intergenic | 30.0% | |
| AGCAATGAATCTGAATGAAT+TGG | - | chr5_3:30205709-30205728 | Msa0807640:intron | 30.0% | |
| AATGAATCTGAATGAATTGG+TGG | - | chr5_3:30205712-30205731 | Msa0807640:intron | 30.0% | |
| !!! | GTTTTGAAGGATTTGAAAAG+AGG | - | chr5_3:30204934-30204953 | Msa0807640:CDS | 30.0% |
| ! | ATTTGCTAAGGAAGAAACAA+TGG | + | chr5_3:30205069-30205088 | None:intergenic | 30.0% |
| TCTTGTAGGCATAAACAAAA+AGG | + | chr5_3:30205127-30205146 | None:intergenic | 30.0% | |
| !!! | GGTTTTGATTATGATCTTGT+AGG | + | chr5_3:30205141-30205160 | None:intergenic | 30.0% |
| AAGATCATAATCAAAACCTG+TGG | - | chr5_3:30205143-30205162 | Msa0807640:CDS | 30.0% | |
| GAATTCATTGAATAACCACA+AGG | + | chr5_3:30205599-30205618 | None:intergenic | 30.0% | |
| AGCAATGAATCTGAATGAAT+TGG | - | chr5_3:30205709-30205728 | Msa0807640:intron | 30.0% | |
| AATGAATCTGAATGAATTGG+TGG | - | chr5_3:30205712-30205731 | Msa0807640:intron | 30.0% | |
| AATGAGCTAATGGAGTCTAA+AGG | - | chr5_3:30204436-30204455 | Msa0807640:CDS | 35.0% | |
| TGACGATTTACTACTACTAC+TGG | + | chr5_3:30204476-30204495 | None:intergenic | 35.0% | |
| ATTGAAGACATTCGTCCTAA+CGG | - | chr5_3:30204532-30204551 | Msa0807640:CDS | 35.0% | |
| ATCAGTATGGAATATCAGGA+TGG | + | chr5_3:30204728-30204747 | None:intergenic | 35.0% | |
| GAGAATCAGTATGGAATATC+AGG | + | chr5_3:30204732-30204751 | None:intergenic | 35.0% | |
| TAAAAAACTGCTTGCATGCA+GGG | + | chr5_3:30204759-30204778 | None:intergenic | 35.0% | |
| ATAAAAAACTGCTTGCATGC+AGG | + | chr5_3:30204760-30204779 | None:intergenic | 35.0% | |
| AAAGACACACAGAAGAAACA+AGG | + | chr5_3:30204878-30204897 | None:intergenic | 35.0% | |
| !!! | GTTTCTGCAATTGGTTTTGA+AGG | - | chr5_3:30204921-30204940 | Msa0807640:CDS | 35.0% |
| TGAAGGATTTGAAAAGAGGT+TGG | - | chr5_3:30204938-30204957 | Msa0807640:CDS | 35.0% | |
| AATCCCACCCATATTGAAAT+TGG | - | chr5_3:30205187-30205206 | Msa0807640:CDS | 35.0% | |
| ! | AGATCTGACTTTAAGGGAAA+TGG | + | chr5_3:30205219-30205238 | None:intergenic | 35.0% |
| AGAGTAAACATGCCAATTCT+GGG | + | chr5_3:30205390-30205409 | None:intergenic | 35.0% | |
| !! | GACTTTGATTTTGAACCTTG+TGG | - | chr5_3:30205581-30205600 | Msa0807640:intron | 35.0% |
| !! | ATCTTCTGGAGTAACATGAA+TGG | + | chr5_3:30205645-30205664 | None:intergenic | 35.0% |
| ATTCATGTTACTCCAGAAGA+TGG | - | chr5_3:30205644-30205663 | Msa0807640:intron | 35.0% | |
| TTCATGTTACTCCAGAAGAT+GGG | - | chr5_3:30205645-30205664 | Msa0807640:intron | 35.0% | |
| CTACAGAAAACTCATTTGGT+TGG | + | chr5_3:30205757-30205776 | None:intergenic | 35.0% | |
| ACAGCTACAGAAAACTCATT+TGG | + | chr5_3:30205761-30205780 | None:intergenic | 35.0% | |
| AATGAGCTAATGGAGTCTAA+AGG | - | chr5_3:30204436-30204455 | Msa0807640:CDS | 35.0% | |
| TGACGATTTACTACTACTAC+TGG | + | chr5_3:30204476-30204495 | None:intergenic | 35.0% | |
| ATTGAAGACATTCGTCCTAA+CGG | - | chr5_3:30204532-30204551 | Msa0807640:CDS | 35.0% | |
| ATCAGTATGGAATATCAGGA+TGG | + | chr5_3:30204728-30204747 | None:intergenic | 35.0% | |
| GAGAATCAGTATGGAATATC+AGG | + | chr5_3:30204732-30204751 | None:intergenic | 35.0% | |
| TAAAAAACTGCTTGCATGCA+GGG | + | chr5_3:30204759-30204778 | None:intergenic | 35.0% | |
| ATAAAAAACTGCTTGCATGC+AGG | + | chr5_3:30204760-30204779 | None:intergenic | 35.0% | |
| AAAGACACACAGAAGAAACA+AGG | + | chr5_3:30204878-30204897 | None:intergenic | 35.0% | |
| !!! | GTTTCTGCAATTGGTTTTGA+AGG | - | chr5_3:30204921-30204940 | Msa0807640:CDS | 35.0% |
| TGAAGGATTTGAAAAGAGGT+TGG | - | chr5_3:30204938-30204957 | Msa0807640:CDS | 35.0% | |
| AATCCCACCCATATTGAAAT+TGG | - | chr5_3:30205187-30205206 | Msa0807640:CDS | 35.0% | |
| ! | AGATCTGACTTTAAGGGAAA+TGG | + | chr5_3:30205219-30205238 | None:intergenic | 35.0% |
| AGAGTAAACATGCCAATTCT+GGG | + | chr5_3:30205390-30205409 | None:intergenic | 35.0% | |
| !! | GACTTTGATTTTGAACCTTG+TGG | - | chr5_3:30205581-30205600 | Msa0807640:intron | 35.0% |
| !! | ATCTTCTGGAGTAACATGAA+TGG | + | chr5_3:30205645-30205664 | None:intergenic | 35.0% |
| ATTCATGTTACTCCAGAAGA+TGG | - | chr5_3:30205644-30205663 | Msa0807640:intron | 35.0% | |
| TTCATGTTACTCCAGAAGAT+GGG | - | chr5_3:30205645-30205664 | Msa0807640:intron | 35.0% | |
| CTACAGAAAACTCATTTGGT+TGG | + | chr5_3:30205757-30205776 | None:intergenic | 35.0% | |
| ACAGCTACAGAAAACTCATT+TGG | + | chr5_3:30205761-30205780 | None:intergenic | 35.0% | |
| AACTTCTTGATTCCACCGTT+AGG | + | chr5_3:30204550-30204569 | None:intergenic | 40.0% | |
| AAAAAACTGCTTGCATGCAG+GGG | + | chr5_3:30204758-30204777 | None:intergenic | 40.0% | |
| AGAGTACAATCGCAAAGAGA+GGG | + | chr5_3:30204845-30204864 | None:intergenic | 40.0% | |
| ! | AAGAGTACAATCGCAAAGAG+AGG | + | chr5_3:30204846-30204865 | None:intergenic | 40.0% |
| GTGTCTTTCTGTTTGAACTG+TGG | - | chr5_3:30204890-30204909 | Msa0807640:CDS | 40.0% | |
| ATCTCTCACAAAATCCCAAC+TGG | - | chr5_3:30205016-30205035 | Msa0807640:CDS | 40.0% | |
| TGCAAGAATCTCATCCAGTT+GGG | + | chr5_3:30205033-30205052 | None:intergenic | 40.0% | |
| ! | GTCAACATCGTCATTTGCTA+AGG | + | chr5_3:30205081-30205100 | None:intergenic | 40.0% |
| GTAGGCATAAACAAAAAGGC+TGG | + | chr5_3:30205123-30205142 | None:intergenic | 40.0% | |
| ! | CAGTAATTTGGTAGTACCAC+AGG | + | chr5_3:30205162-30205181 | None:intergenic | 40.0% |
| TGGGATTGCAAGCAGTAATT+TGG | + | chr5_3:30205174-30205193 | None:intergenic | 40.0% | |
| GACTCGGCCAATTTCAATAT+GGG | + | chr5_3:30205197-30205216 | None:intergenic | 40.0% | |
| ! | GACTTTAAGGGAAATGGACT+CGG | + | chr5_3:30205213-30205232 | None:intergenic | 40.0% |
| CCTCACAGATCTGACTTTAA+GGG | + | chr5_3:30205225-30205244 | None:intergenic | 40.0% | |
| ACCTCACAGATCTGACTTTA+AGG | + | chr5_3:30205226-30205245 | None:intergenic | 40.0% | |
| AGGAAAAATGAAACTGCCTC+GGG | + | chr5_3:30205252-30205271 | None:intergenic | 40.0% | |
| CAGGAAAAATGAAACTGCCT+CGG | + | chr5_3:30205253-30205272 | None:intergenic | 40.0% | |
| ATCAAGGACAGCTACTTCTT+CGG | + | chr5_3:30205306-30205325 | None:intergenic | 40.0% | |
| ! | ATGGCTACTTTGGAAAGCTT+GGG | - | chr5_3:30205324-30205343 | Msa0807640:CDS | 40.0% |
| CAGAGTAAACATGCCAATTC+TGG | + | chr5_3:30205391-30205410 | None:intergenic | 40.0% | |
| ! | CTTAGACAGAGAGAAAGCAT+TGG | - | chr5_3:30205472-30205491 | Msa0807640:intron | 40.0% |
| !! | TCTGAATGAATTGGTGGTGA+AGG | - | chr5_3:30205718-30205737 | Msa0807640:intron | 40.0% |
| ! | GTTTTCTGTAGCTGTTCATG+TGG | - | chr5_3:30205766-30205785 | Msa0807640:intron | 40.0% |
| !! | CAGCACTTAAGTGTTGATCT+AGG | + | chr5_3:30205932-30205951 | None:intergenic | 40.0% |
| CTAGATCAACACTTAAGTGC+TGG | - | chr5_3:30205930-30205949 | Msa0807640:CDS | 40.0% | |
| AACTTCTTGATTCCACCGTT+AGG | + | chr5_3:30204550-30204569 | None:intergenic | 40.0% | |
| AAAAAACTGCTTGCATGCAG+GGG | + | chr5_3:30204758-30204777 | None:intergenic | 40.0% | |
| AGAGTACAATCGCAAAGAGA+GGG | + | chr5_3:30204845-30204864 | None:intergenic | 40.0% | |
| ! | AAGAGTACAATCGCAAAGAG+AGG | + | chr5_3:30204846-30204865 | None:intergenic | 40.0% |
| GTGTCTTTCTGTTTGAACTG+TGG | - | chr5_3:30204890-30204909 | Msa0807640:CDS | 40.0% | |
| ATCTCTCACAAAATCCCAAC+TGG | - | chr5_3:30205016-30205035 | Msa0807640:CDS | 40.0% | |
| TGCAAGAATCTCATCCAGTT+GGG | + | chr5_3:30205033-30205052 | None:intergenic | 40.0% | |
| ! | GTCAACATCGTCATTTGCTA+AGG | + | chr5_3:30205081-30205100 | None:intergenic | 40.0% |
| GTAGGCATAAACAAAAAGGC+TGG | + | chr5_3:30205123-30205142 | None:intergenic | 40.0% | |
| ! | CAGTAATTTGGTAGTACCAC+AGG | + | chr5_3:30205162-30205181 | None:intergenic | 40.0% |
| TGGGATTGCAAGCAGTAATT+TGG | + | chr5_3:30205174-30205193 | None:intergenic | 40.0% | |
| GACTCGGCCAATTTCAATAT+GGG | + | chr5_3:30205197-30205216 | None:intergenic | 40.0% | |
| ! | GACTTTAAGGGAAATGGACT+CGG | + | chr5_3:30205213-30205232 | None:intergenic | 40.0% |
| CCTCACAGATCTGACTTTAA+GGG | + | chr5_3:30205225-30205244 | None:intergenic | 40.0% | |
| ACCTCACAGATCTGACTTTA+AGG | + | chr5_3:30205226-30205245 | None:intergenic | 40.0% | |
| AGGAAAAATGAAACTGCCTC+GGG | + | chr5_3:30205252-30205271 | None:intergenic | 40.0% | |
| CAGGAAAAATGAAACTGCCT+CGG | + | chr5_3:30205253-30205272 | None:intergenic | 40.0% | |
| ATCAAGGACAGCTACTTCTT+CGG | + | chr5_3:30205306-30205325 | None:intergenic | 40.0% | |
| ! | ATGGCTACTTTGGAAAGCTT+GGG | - | chr5_3:30205324-30205343 | Msa0807640:CDS | 40.0% |
| CAGAGTAAACATGCCAATTC+TGG | + | chr5_3:30205391-30205410 | None:intergenic | 40.0% | |
| ! | CTTAGACAGAGAGAAAGCAT+TGG | - | chr5_3:30205472-30205491 | Msa0807640:intron | 40.0% |
| !! | TCTGAATGAATTGGTGGTGA+AGG | - | chr5_3:30205718-30205737 | Msa0807640:intron | 40.0% |
| ! | GTTTTCTGTAGCTGTTCATG+TGG | - | chr5_3:30205766-30205785 | Msa0807640:intron | 40.0% |
| !! | CAGCACTTAAGTGTTGATCT+AGG | + | chr5_3:30205932-30205951 | None:intergenic | 40.0% |
| CTAGATCAACACTTAAGTGC+TGG | - | chr5_3:30205930-30205949 | Msa0807640:CDS | 40.0% | |
| GAGCTAATGGAGTCTAAAGG+AGG | - | chr5_3:30204439-30204458 | Msa0807640:CDS | 45.0% | |
| TTATTCTACGAAGCTCCCCT+CGG | - | chr5_3:30204502-30204521 | Msa0807640:CDS | 45.0% | |
| TCTTCAATGCTGTATCCGAG+GGG | + | chr5_3:30204520-30204539 | None:intergenic | 45.0% | |
| GTCTTCAATGCTGTATCCGA+GGG | + | chr5_3:30204521-30204540 | None:intergenic | 45.0% | |
| TGTCTTCAATGCTGTATCCG+AGG | + | chr5_3:30204522-30204541 | None:intergenic | 45.0% | |
| AGGTGAATGAACACTCACGT+TGG | + | chr5_3:30204590-30204609 | None:intergenic | 45.0% | |
| ACAATCGCAAAGAGAGGGTT+TGG | + | chr5_3:30204840-30204859 | None:intergenic | 45.0% | |
| TTCTGTTTGAACTGTGGCCA+TGG | - | chr5_3:30204896-30204915 | Msa0807640:CDS | 45.0% | |
| ACCAATTGCAGAAACTGCCA+TGG | + | chr5_3:30204916-30204935 | None:intergenic | 45.0% | |
| ! | GAAATTTCCTTTTCCGACCC+TGG | - | chr5_3:30204960-30204979 | Msa0807640:CDS | 45.0% |
| AAAAAGTCCAGGGTCGGAAA+AGG | + | chr5_3:30204970-30204989 | None:intergenic | 45.0% | |
| GTCAGAAAAAAGTCCAGGGT+CGG | + | chr5_3:30204976-30204995 | None:intergenic | 45.0% | |
| GAGGGTCAGAAAAAAGTCCA+GGG | + | chr5_3:30204980-30204999 | None:intergenic | 45.0% | |
| TGAGGGTCAGAAAAAAGTCC+AGG | + | chr5_3:30204981-30205000 | None:intergenic | 45.0% | |
| !!! | GGACTTTTTTCTGACCCTCA+CGG | - | chr5_3:30204981-30205000 | Msa0807640:CDS | 45.0% |
| !!! | GACTTTTTTCTGACCCTCAC+GGG | - | chr5_3:30204982-30205001 | Msa0807640:CDS | 45.0% |
| GTGCAAGAATCTCATCCAGT+TGG | + | chr5_3:30205034-30205053 | None:intergenic | 45.0% | |
| CGGCCAATTTCAATATGGGT+GGG | + | chr5_3:30205193-30205212 | None:intergenic | 45.0% | |
| TCGGCCAATTTCAATATGGG+TGG | + | chr5_3:30205194-30205213 | None:intergenic | 45.0% | |
| GGACTCGGCCAATTTCAATA+TGG | + | chr5_3:30205198-30205217 | None:intergenic | 45.0% | |
| CCCTTAAAGTCAGATCTGTG+AGG | - | chr5_3:30205222-30205241 | Msa0807640:CDS | 45.0% | |
| !! | CGAGGCAGTTTCATTTTTCC+TGG | - | chr5_3:30205251-30205270 | Msa0807640:CDS | 45.0% |
| CAGCTACTTCTTCGGAAAAG+TGG | + | chr5_3:30205298-30205317 | None:intergenic | 45.0% | |
| GAAGAAGTAGCTGTCCTTGA+TGG | - | chr5_3:30205305-30205324 | Msa0807640:CDS | 45.0% | |
| GCTTTCCAAAGTAGCCATCA+AGG | + | chr5_3:30205322-30205341 | None:intergenic | 45.0% | |
| ! | GATGGCTACTTTGGAAAGCT+TGG | - | chr5_3:30205323-30205342 | Msa0807640:CDS | 45.0% |
| ! | TACTTTGGAAAGCTTGGGTC+AGG | - | chr5_3:30205329-30205348 | Msa0807640:CDS | 45.0% |
| AGGCAGCACGGCTTATATTA+TGG | - | chr5_3:30205349-30205368 | Msa0807640:CDS | 45.0% | |
| GGCAGCACGGCTTATATTAT+GGG | - | chr5_3:30205350-30205369 | Msa0807640:CDS | 45.0% | |
| AGCACGGCTTATATTATGGG+TGG | - | chr5_3:30205353-30205372 | Msa0807640:CDS | 45.0% | |
| ATGCCAATTCTGGGCTTCAT+CGG | + | chr5_3:30205381-30205400 | None:intergenic | 45.0% | |
| GTGTGTAGACAGAGTCGTTT+GGG | + | chr5_3:30205433-30205452 | None:intergenic | 45.0% | |
| AGTGTGTAGACAGAGTCGTT+TGG | + | chr5_3:30205434-30205453 | None:intergenic | 45.0% | |
| TGCTTTCTCTCTGTCTAAGC+CGG | + | chr5_3:30205471-30205490 | None:intergenic | 45.0% | |
| TTTCCTGATGCCAGAGTTCA+CGG | + | chr5_3:30205537-30205556 | None:intergenic | 45.0% | |
| GCATAACTGAACCCATCTTC+TGG | + | chr5_3:30205659-30205678 | None:intergenic | 45.0% | |
| !! | TATGCAAGCTTTGAGACTGC+TGG | - | chr5_3:30205674-30205693 | Msa0807640:intron | 45.0% |
| GGTTGTTCGCTGGATGTTAA+GGG | - | chr5_3:30205815-30205834 | Msa0807640:CDS | 45.0% | |
| ! | CGGCAGTCTTGACAAACTTT+TGG | + | chr5_3:30205898-30205917 | None:intergenic | 45.0% |
| GAGCTAATGGAGTCTAAAGG+AGG | - | chr5_3:30204439-30204458 | Msa0807640:CDS | 45.0% | |
| TTATTCTACGAAGCTCCCCT+CGG | - | chr5_3:30204502-30204521 | Msa0807640:CDS | 45.0% | |
| TCTTCAATGCTGTATCCGAG+GGG | + | chr5_3:30204520-30204539 | None:intergenic | 45.0% | |
| GTCTTCAATGCTGTATCCGA+GGG | + | chr5_3:30204521-30204540 | None:intergenic | 45.0% | |
| TGTCTTCAATGCTGTATCCG+AGG | + | chr5_3:30204522-30204541 | None:intergenic | 45.0% | |
| AGGTGAATGAACACTCACGT+TGG | + | chr5_3:30204590-30204609 | None:intergenic | 45.0% | |
| ACAATCGCAAAGAGAGGGTT+TGG | + | chr5_3:30204840-30204859 | None:intergenic | 45.0% | |
| TTCTGTTTGAACTGTGGCCA+TGG | - | chr5_3:30204896-30204915 | Msa0807640:CDS | 45.0% | |
| ACCAATTGCAGAAACTGCCA+TGG | + | chr5_3:30204916-30204935 | None:intergenic | 45.0% | |
| ! | GAAATTTCCTTTTCCGACCC+TGG | - | chr5_3:30204960-30204979 | Msa0807640:CDS | 45.0% |
| AAAAAGTCCAGGGTCGGAAA+AGG | + | chr5_3:30204970-30204989 | None:intergenic | 45.0% | |
| GTCAGAAAAAAGTCCAGGGT+CGG | + | chr5_3:30204976-30204995 | None:intergenic | 45.0% | |
| GAGGGTCAGAAAAAAGTCCA+GGG | + | chr5_3:30204980-30204999 | None:intergenic | 45.0% | |
| TGAGGGTCAGAAAAAAGTCC+AGG | + | chr5_3:30204981-30205000 | None:intergenic | 45.0% | |
| !!! | GGACTTTTTTCTGACCCTCA+CGG | - | chr5_3:30204981-30205000 | Msa0807640:CDS | 45.0% |
| !!! | GACTTTTTTCTGACCCTCAC+GGG | - | chr5_3:30204982-30205001 | Msa0807640:CDS | 45.0% |
| GTGCAAGAATCTCATCCAGT+TGG | + | chr5_3:30205034-30205053 | None:intergenic | 45.0% | |
| CGGCCAATTTCAATATGGGT+GGG | + | chr5_3:30205193-30205212 | None:intergenic | 45.0% | |
| TCGGCCAATTTCAATATGGG+TGG | + | chr5_3:30205194-30205213 | None:intergenic | 45.0% | |
| GGACTCGGCCAATTTCAATA+TGG | + | chr5_3:30205198-30205217 | None:intergenic | 45.0% | |
| CCCTTAAAGTCAGATCTGTG+AGG | - | chr5_3:30205222-30205241 | Msa0807640:CDS | 45.0% | |
| !! | CGAGGCAGTTTCATTTTTCC+TGG | - | chr5_3:30205251-30205270 | Msa0807640:CDS | 45.0% |
| CAGCTACTTCTTCGGAAAAG+TGG | + | chr5_3:30205298-30205317 | None:intergenic | 45.0% | |
| GAAGAAGTAGCTGTCCTTGA+TGG | - | chr5_3:30205305-30205324 | Msa0807640:CDS | 45.0% | |
| GCTTTCCAAAGTAGCCATCA+AGG | + | chr5_3:30205322-30205341 | None:intergenic | 45.0% | |
| ! | GATGGCTACTTTGGAAAGCT+TGG | - | chr5_3:30205323-30205342 | Msa0807640:CDS | 45.0% |
| ! | TACTTTGGAAAGCTTGGGTC+AGG | - | chr5_3:30205329-30205348 | Msa0807640:CDS | 45.0% |
| AGGCAGCACGGCTTATATTA+TGG | - | chr5_3:30205349-30205368 | Msa0807640:CDS | 45.0% | |
| GGCAGCACGGCTTATATTAT+GGG | - | chr5_3:30205350-30205369 | Msa0807640:CDS | 45.0% | |
| AGCACGGCTTATATTATGGG+TGG | - | chr5_3:30205353-30205372 | Msa0807640:CDS | 45.0% | |
| ATGCCAATTCTGGGCTTCAT+CGG | + | chr5_3:30205381-30205400 | None:intergenic | 45.0% | |
| GTGTGTAGACAGAGTCGTTT+GGG | + | chr5_3:30205433-30205452 | None:intergenic | 45.0% | |
| AGTGTGTAGACAGAGTCGTT+TGG | + | chr5_3:30205434-30205453 | None:intergenic | 45.0% | |
| TGCTTTCTCTCTGTCTAAGC+CGG | + | chr5_3:30205471-30205490 | None:intergenic | 45.0% | |
| TTTCCTGATGCCAGAGTTCA+CGG | + | chr5_3:30205537-30205556 | None:intergenic | 45.0% | |
| GCATAACTGAACCCATCTTC+TGG | + | chr5_3:30205659-30205678 | None:intergenic | 45.0% | |
| !! | TATGCAAGCTTTGAGACTGC+TGG | - | chr5_3:30205674-30205693 | Msa0807640:intron | 45.0% |
| GGTTGTTCGCTGGATGTTAA+GGG | - | chr5_3:30205815-30205834 | Msa0807640:CDS | 45.0% | |
| ! | CGGCAGTCTTGACAAACTTT+TGG | + | chr5_3:30205898-30205917 | None:intergenic | 45.0% |
| GAAGACATTCGTCCTAACGG+TGG | - | chr5_3:30204535-30204554 | Msa0807640:CDS | 50.0% | |
| CAGGGGAACGAGAATCAGTA+TGG | + | chr5_3:30204741-30204760 | None:intergenic | 50.0% | |
| GCCATGGCAGTTTCTGCAAT+TGG | - | chr5_3:30204912-30204931 | Msa0807640:CDS | 50.0% | |
| !!! | TTTTTTCTGACCCTCACGGG+AGG | - | chr5_3:30204985-30205004 | Msa0807640:CDS | 50.0% |
| ! | TTTTTCTGACCCTCACGGGA+GGG | - | chr5_3:30204986-30205005 | Msa0807640:CDS | 50.0% |
| ATCTTAAACCCCTCCCGTGA+GGG | + | chr5_3:30204998-30205017 | None:intergenic | 50.0% | |
| GAAACAATGGTGCACTCAGC+TGG | + | chr5_3:30205056-30205075 | None:intergenic | 50.0% | |
| GCTGGACTCAGACAGAACAT+AGG | + | chr5_3:30205105-30205124 | None:intergenic | 50.0% | |
| CTTCGGAAAAGTGGCGATGA+GGG | + | chr5_3:30205289-30205308 | None:intergenic | 50.0% | |
| TCTTCGGAAAAGTGGCGATG+AGG | + | chr5_3:30205290-30205309 | None:intergenic | 50.0% | |
| ! | GCTGTCCTTGATGGCTACTT+TGG | - | chr5_3:30205314-30205333 | Msa0807640:CDS | 50.0% |
| GATCCGATGAAGCCCAGAAT+TGG | - | chr5_3:30205375-30205394 | Msa0807640:CDS | 50.0% | |
| ACACTCGAGATGTGCATGAC+CGG | - | chr5_3:30205449-30205468 | Msa0807640:CDS | 50.0% | |
| TGCAAGCAAGTCGTTTGAGC+AGG | - | chr5_3:30205793-30205812 | Msa0807640:intron | 50.0% | |
| GCAAGCAAGTCGTTTGAGCA+GGG | - | chr5_3:30205794-30205813 | Msa0807640:intron | 50.0% | |
| GGGTTGTTCGCTGGATGTTA+AGG | - | chr5_3:30205814-30205833 | Msa0807640:CDS | 50.0% | |
| AGGGATACTGTCGTGAAGAG+AGG | - | chr5_3:30205834-30205853 | Msa0807640:CDS | 50.0% | |
| GTGAAGAGAGGAGCCTAGAA+GGG | - | chr5_3:30205846-30205865 | Msa0807640:CDS | 50.0% | |
| AGCCTAGAAGGGCTTGGAAT+GGG | - | chr5_3:30205857-30205876 | Msa0807640:CDS | 50.0% | |
| ! | TTTGTCAAGACTGCCGACTG+TGG | - | chr5_3:30205902-30205921 | Msa0807640:CDS | 50.0% |
| GAAGACATTCGTCCTAACGG+TGG | - | chr5_3:30204535-30204554 | Msa0807640:CDS | 50.0% | |
| CAGGGGAACGAGAATCAGTA+TGG | + | chr5_3:30204741-30204760 | None:intergenic | 50.0% | |
| GCCATGGCAGTTTCTGCAAT+TGG | - | chr5_3:30204912-30204931 | Msa0807640:CDS | 50.0% | |
| !!! | TTTTTTCTGACCCTCACGGG+AGG | - | chr5_3:30204985-30205004 | Msa0807640:CDS | 50.0% |
| ! | TTTTTCTGACCCTCACGGGA+GGG | - | chr5_3:30204986-30205005 | Msa0807640:CDS | 50.0% |
| ATCTTAAACCCCTCCCGTGA+GGG | + | chr5_3:30204998-30205017 | None:intergenic | 50.0% | |
| GAAACAATGGTGCACTCAGC+TGG | + | chr5_3:30205056-30205075 | None:intergenic | 50.0% | |
| GCTGGACTCAGACAGAACAT+AGG | + | chr5_3:30205105-30205124 | None:intergenic | 50.0% | |
| CTTCGGAAAAGTGGCGATGA+GGG | + | chr5_3:30205289-30205308 | None:intergenic | 50.0% | |
| TCTTCGGAAAAGTGGCGATG+AGG | + | chr5_3:30205290-30205309 | None:intergenic | 50.0% | |
| ! | GCTGTCCTTGATGGCTACTT+TGG | - | chr5_3:30205314-30205333 | Msa0807640:CDS | 50.0% |
| GATCCGATGAAGCCCAGAAT+TGG | - | chr5_3:30205375-30205394 | Msa0807640:CDS | 50.0% | |
| ACACTCGAGATGTGCATGAC+CGG | - | chr5_3:30205449-30205468 | Msa0807640:CDS | 50.0% | |
| TGCAAGCAAGTCGTTTGAGC+AGG | - | chr5_3:30205793-30205812 | Msa0807640:intron | 50.0% | |
| GCAAGCAAGTCGTTTGAGCA+GGG | - | chr5_3:30205794-30205813 | Msa0807640:intron | 50.0% | |
| GGGTTGTTCGCTGGATGTTA+AGG | - | chr5_3:30205814-30205833 | Msa0807640:CDS | 50.0% | |
| AGGGATACTGTCGTGAAGAG+AGG | - | chr5_3:30205834-30205853 | Msa0807640:CDS | 50.0% | |
| GTGAAGAGAGGAGCCTAGAA+GGG | - | chr5_3:30205846-30205865 | Msa0807640:CDS | 50.0% | |
| AGCCTAGAAGGGCTTGGAAT+GGG | - | chr5_3:30205857-30205876 | Msa0807640:CDS | 50.0% | |
| ! | TTTGTCAAGACTGCCGACTG+TGG | - | chr5_3:30205902-30205921 | Msa0807640:CDS | 50.0% |
| GAGCGCACTGCACAAGAGTT+TGG | + | chr5_3:30204700-30204719 | None:intergenic | 55.0% | |
| ! | TTTTCTGACCCTCACGGGAG+GGG | - | chr5_3:30204987-30205006 | Msa0807640:CDS | 55.0% |
| GATCTTAAACCCCTCCCGTG+AGG | + | chr5_3:30204999-30205018 | None:intergenic | 55.0% | |
| AGATCTGTGAGGTACACCCG+AGG | - | chr5_3:30205233-30205252 | Msa0807640:CDS | 55.0% | |
| GTGGCGATGAGGGAAAGACT+GGG | + | chr5_3:30205279-30205298 | None:intergenic | 55.0% | |
| AGTGGCGATGAGGGAAAGAC+TGG | + | chr5_3:30205280-30205299 | None:intergenic | 55.0% | |
| AAAGCTTGGGTCAGGCAGCA+CGG | - | chr5_3:30205337-30205356 | Msa0807640:CDS | 55.0% | |
| GACAGAGTCGTTTGGGCTCA+CGG | + | chr5_3:30205426-30205445 | None:intergenic | 55.0% | |
| GCCAAGATGACCGTGAACTC+TGG | - | chr5_3:30205524-30205543 | Msa0807640:intron | 55.0% | |
| GCCAGAGTTCACGGTCATCT+TGG | + | chr5_3:30205528-30205547 | None:intergenic | 55.0% | |
| TGACCGTGAACTCTGGCATC+AGG | - | chr5_3:30205531-30205550 | Msa0807640:intron | 55.0% | |
| GTTTGAGCAGGGTTGTTCGC+TGG | - | chr5_3:30205805-30205824 | Msa0807640:intron | 55.0% | |
| CGTGAAGAGAGGAGCCTAGA+AGG | - | chr5_3:30205845-30205864 | Msa0807640:CDS | 55.0% | |
| GAGCCTAGAAGGGCTTGGAA+TGG | - | chr5_3:30205856-30205875 | Msa0807640:CDS | 55.0% | |
| CACCCATTCCAAGCCCTTCT+AGG | + | chr5_3:30205862-30205881 | None:intergenic | 55.0% | |
| CTAGAAGGGCTTGGAATGGG+TGG | - | chr5_3:30205860-30205879 | Msa0807640:CDS | 55.0% | |
| TGATCTAGGCGAGCCACAGT+CGG | + | chr5_3:30205918-30205937 | None:intergenic | 55.0% | |
| GAGCGCACTGCACAAGAGTT+TGG | + | chr5_3:30204700-30204719 | None:intergenic | 55.0% | |
| ! | TTTTCTGACCCTCACGGGAG+GGG | - | chr5_3:30204987-30205006 | Msa0807640:CDS | 55.0% |
| GATCTTAAACCCCTCCCGTG+AGG | + | chr5_3:30204999-30205018 | None:intergenic | 55.0% | |
| AGATCTGTGAGGTACACCCG+AGG | - | chr5_3:30205233-30205252 | Msa0807640:CDS | 55.0% | |
| GTGGCGATGAGGGAAAGACT+GGG | + | chr5_3:30205279-30205298 | None:intergenic | 55.0% | |
| AGTGGCGATGAGGGAAAGAC+TGG | + | chr5_3:30205280-30205299 | None:intergenic | 55.0% | |
| AAAGCTTGGGTCAGGCAGCA+CGG | - | chr5_3:30205337-30205356 | Msa0807640:CDS | 55.0% | |
| GACAGAGTCGTTTGGGCTCA+CGG | + | chr5_3:30205426-30205445 | None:intergenic | 55.0% | |
| GCCAAGATGACCGTGAACTC+TGG | - | chr5_3:30205524-30205543 | Msa0807640:intron | 55.0% | |
| GCCAGAGTTCACGGTCATCT+TGG | + | chr5_3:30205528-30205547 | None:intergenic | 55.0% | |
| TGACCGTGAACTCTGGCATC+AGG | - | chr5_3:30205531-30205550 | Msa0807640:intron | 55.0% | |
| GTTTGAGCAGGGTTGTTCGC+TGG | - | chr5_3:30205805-30205824 | Msa0807640:intron | 55.0% | |
| CGTGAAGAGAGGAGCCTAGA+AGG | - | chr5_3:30205845-30205864 | Msa0807640:CDS | 55.0% | |
| GAGCCTAGAAGGGCTTGGAA+TGG | - | chr5_3:30205856-30205875 | Msa0807640:CDS | 55.0% | |
| CACCCATTCCAAGCCCTTCT+AGG | + | chr5_3:30205862-30205881 | None:intergenic | 55.0% | |
| CTAGAAGGGCTTGGAATGGG+TGG | - | chr5_3:30205860-30205879 | Msa0807640:CDS | 55.0% | |
| TGATCTAGGCGAGCCACAGT+CGG | + | chr5_3:30205918-30205937 | None:intergenic | 55.0% | |
| TGAGGGAAAGACTGGGCACC+AGG | + | chr5_3:30205272-30205291 | None:intergenic | 60.0% | |
| TGGGCTCACGGAATCTGCAG+AGG | + | chr5_3:30205414-30205433 | None:intergenic | 60.0% | |
| GAGAGGAGCCTAGAAGGGCT+TGG | - | chr5_3:30205851-30205870 | Msa0807640:CDS | 60.0% | |
| TGAGGGAAAGACTGGGCACC+AGG | + | chr5_3:30205272-30205291 | None:intergenic | 60.0% | |
| TGGGCTCACGGAATCTGCAG+AGG | + | chr5_3:30205414-30205433 | None:intergenic | 60.0% | |
| GAGAGGAGCCTAGAAGGGCT+TGG | - | chr5_3:30205851-30205870 | Msa0807640:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 30204432 | 30205973 | 30204432 | ID=Msa0807640;Name=Msa0807640 |
| chr5_3 | mRNA | 30204432 | 30205973 | 30204432 | ID=Msa0807640-mRNA-1;Parent=Msa0807640;Name=Msa0807640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=13|0|0|1|0|0|2|0|401 |
| chr5_3 | exon | 30205810 | 30205973 | 30205810 | ID=Msa0807640-mRNA-1:exon:10221;Parent=Msa0807640-mRNA-1 |
| chr5_3 | exon | 30204432 | 30205483 | 30204432 | ID=Msa0807640-mRNA-1:exon:10220;Parent=Msa0807640-mRNA-1 |
| chr5_3 | five_prime_UTR | 30205961 | 30205973 | 30205961 | ID=Msa0807640-mRNA-1:five_prime_utr;Parent=Msa0807640-mRNA-1 |
| chr5_3 | CDS | 30205810 | 30205960 | 30205810 | ID=Msa0807640-mRNA-1:cds;Parent=Msa0807640-mRNA-1 |
| chr5_3 | CDS | 30204432 | 30205483 | 30204432 | ID=Msa0807640-mRNA-1:cds;Parent=Msa0807640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
