Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807650 | PNY09438.1 | 100.000 | 55 | 0 | 0 | 1 | 55 | 1 | 55 | 7.52e-29 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807650 | A0A2K3P2B5 | 100.000 | 55 | 0 | 0 | 1 | 55 | 1 | 55 | 3.59e-29 | 106 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0729290 | Msa0807650 | 0.985609 | 4.202839e-164 | -8.615850e-47 |
| Msa0807640 | Msa0807650 | 0.955560 | 2.288466e-113 | -8.615850e-47 |
| Msa0138390 | Msa0807650 | 0.809122 | 2.211934e-50 | -8.615850e-47 |
| Msa0425120 | Msa0807650 | 0.819978 | 8.741568e-53 | -8.615850e-47 |
| Msa0240450 | Msa0807650 | 0.810299 | 1.234877e-50 | -8.615850e-47 |
| Msa0315930 | Msa0807650 | 0.808434 | 3.103041e-50 | -8.615850e-47 |
| Msa0516510 | Msa0807650 | 0.809576 | 1.767020e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807650 | MtrunA17_Chr4g0021531 | 98.182 | 55 | 0 | 1 | 1 | 55 | 1 | 54 | 1.22e-30 | 100 |
| Msa0807650 | MtrunA17_Chr8g0368651 | 74.545 | 55 | 10 | 1 | 1 | 55 | 1 | 51 | 9.01e-21 | 76.3 |
| Msa0807650 | MtrunA17_Chr7g0220791 | 75.000 | 36 | 9 | 0 | 20 | 55 | 17 | 52 | 1.39e-16 | 65.5 |
| Msa0807650 | MtrunA17_Chr7g0220801 | 75.000 | 36 | 9 | 0 | 20 | 55 | 17 | 52 | 1.39e-16 | 65.5 |
| Msa0807650 | MtrunA17_Chr7g0220831 | 72.222 | 36 | 10 | 0 | 20 | 55 | 17 | 52 | 9.17e-16 | 63.5 |
| Msa0807650 | MtrunA17_Chr4g0020171 | 72.222 | 36 | 10 | 0 | 20 | 55 | 17 | 52 | 9.17e-16 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 135 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCACAGATCTGACTTTA+AGG | 0.158308 | 5_3:+30330177 | None:intergenic |
| AAGTCACATATTTCAGAATT+TGG | 0.203322 | 5_3:+30329837 | None:intergenic |
| CAGAGTAAACATGCCAATTC+TGG | 0.233926 | 5_3:+30330012 | None:intergenic |
| AGGCAGCACGGCTTATATTA+TGG | 0.244404 | 5_3:-30330051 | Msa0807650:three_prime_UTR |
| AATCCCACCCATATTGAAAT+TGG | 0.267826 | 5_3:-30330213 | Msa0807650:three_prime_UTR |
| TAAATAAGTGTCGCCTATTC+AGG | 0.281649 | 5_3:-30329384 | Msa0807650:three_prime_UTR |
| CACCCATTCCAAGCCCTTCT+AGG | 0.285576 | 5_3:+30329541 | None:intergenic |
| TGGGATTGCAAGCAGTAATT+TGG | 0.289958 | 5_3:+30330229 | None:intergenic |
| CGTGAAGAGAGGAGCCTAGA+AGG | 0.310976 | 5_3:-30329555 | Msa0807650:three_prime_UTR |
| GGACTCGGCCAATTTCAATA+TGG | 0.320655 | 5_3:+30330205 | None:intergenic |
| TTGAAATAAAGTGCATGTTT+TGG | 0.323163 | 5_3:-30329256 | Msa0807650:three_prime_UTR |
| CGGCAGTCTTGACAAACTTT+TGG | 0.351241 | 5_3:+30329505 | None:intergenic |
| GAGAATCAGTATGGAATATC+AGG | 0.363527 | 5_3:+30330671 | None:intergenic |
| GGGTTGTTCGCTGGATGTTA+AGG | 0.371228 | 5_3:-30329586 | Msa0807650:three_prime_UTR |
| TCTTGTAGGCATAAACAAAA+AGG | 0.372256 | 5_3:+30330276 | None:intergenic |
| CAATGAGTTCACGCCTGAAT+AGG | 0.377050 | 5_3:+30329371 | None:intergenic |
| AGATCTGACTTTAAGGGAAA+TGG | 0.377918 | 5_3:+30330184 | None:intergenic |
| GCCATGGCAGTTTCTGCAAT+TGG | 0.380504 | 5_3:-30330488 | Msa0807650:three_prime_UTR |
| TAATCAGATATAATCTAATC+AGG | 0.387087 | 5_3:-30331634 | Msa0807650:intron |
| GCATAACTGAACCCATCTTC+TGG | 0.388865 | 5_3:+30329744 | None:intergenic |
| GCTGTCCTTGATGGCTACTT+TGG | 0.400659 | 5_3:-30330086 | Msa0807650:three_prime_UTR |
| ATCTCTCACAAAATCCCAAC+TGG | 0.403145 | 5_3:-30330384 | Msa0807650:three_prime_UTR |
| ACAATCGCAAAGAGAGGGTT+TGG | 0.404403 | 5_3:+30330563 | None:intergenic |
| GATGGCTACTTTGGAAAGCT+TGG | 0.406979 | 5_3:-30330077 | Msa0807650:three_prime_UTR |
| CAGCACTTAAGTGTTGATCT+AGG | 0.408052 | 5_3:+30329471 | None:intergenic |
| ATGGCTACTTTGGAAAGCTT+GGG | 0.411273 | 5_3:-30330076 | Msa0807650:three_prime_UTR |
| GAAGAAGTAGCTGTCCTTGA+TGG | 0.417679 | 5_3:-30330095 | Msa0807650:three_prime_UTR |
| GGCAGCACGGCTTATATTAT+GGG | 0.419414 | 5_3:-30330050 | Msa0807650:three_prime_UTR |
| TACTTTGGAAAGCTTGGGTC+AGG | 0.421656 | 5_3:-30330071 | Msa0807650:three_prime_UTR |
| TGCAAGCAAGTCGTTTGAGC+AGG | 0.423080 | 5_3:-30329607 | Msa0807650:three_prime_UTR |
| ATTGCAATTTAACCTTTGTC+AGG | 0.423723 | 5_3:+30329044 | None:intergenic |
| TTTCCTGATGCCAGAGTTCA+CGG | 0.425895 | 5_3:+30329866 | None:intergenic |
| TTCTGTTTGAACTGTGGCCA+TGG | 0.427667 | 5_3:-30330504 | Msa0807650:three_prime_UTR |
| GTGTGTAGACAGAGTCGTTT+GGG | 0.432980 | 5_3:+30329970 | None:intergenic |
| GATCCGATGAAGCCCAGAAT+TGG | 0.434903 | 5_3:-30330025 | Msa0807650:three_prime_UTR |
| GGTTGTTCGCTGGATGTTAA+GGG | 0.435015 | 5_3:-30329585 | Msa0807650:three_prime_UTR |
| CCTCACAGATCTGACTTTAA+GGG | 0.436074 | 5_3:+30330178 | None:intergenic |
| TGAAGGATTTGAAAAGAGGT+TGG | 0.442885 | 5_3:-30330462 | Msa0807650:three_prime_UTR |
| TTCGTTTGATTTGATCTTGG+TGG | 0.444673 | 5_3:-30331686 | Msa0807650:five_prime_UTR |
| TCGTTTGATTTGATCTTGGT+GGG | 0.451796 | 5_3:-30331685 | Msa0807650:five_prime_UTR |
| ATTCATGTTACTCCAGAAGA+TGG | 0.452259 | 5_3:-30329756 | Msa0807650:three_prime_UTR |
| GCCAGAGTTCACGGTCATCT+TGG | 0.454845 | 5_3:+30329875 | None:intergenic |
| ACAGCTACAGAAAACTCATT+TGG | 0.455280 | 5_3:+30329642 | None:intergenic |
| GTTTGAGCAGGGTTGTTCGC+TGG | 0.461205 | 5_3:-30329595 | Msa0807650:three_prime_UTR |
| ATACAATACTAAACAAATGA+TGG | 0.465892 | 5_3:+30329067 | None:intergenic |
| CAGGGGAACGAGAATCAGTA+TGG | 0.466418 | 5_3:+30330662 | None:intergenic |
| GAGAGGAGCCTAGAAGGGCT+TGG | 0.469686 | 5_3:-30329549 | Msa0807650:three_prime_UTR |
| GACAGAGTCGTTTGGGCTCA+CGG | 0.470139 | 5_3:+30329977 | None:intergenic |
| AGCAATGAATCTGAATGAAT+TGG | 0.470356 | 5_3:-30329691 | Msa0807650:three_prime_UTR |
| AGTGGCGATGAGGGAAAGAC+TGG | 0.471304 | 5_3:+30330123 | None:intergenic |
| CAGTAATTTGGTAGTACCAC+AGG | 0.471609 | 5_3:+30330241 | None:intergenic |
| AGCCTAGAAGGGCTTGGAAT+GGG | 0.471610 | 5_3:-30329543 | Msa0807650:three_prime_UTR |
| GACTCGGCCAATTTCAATAT+GGG | 0.472381 | 5_3:+30330206 | None:intergenic |
| TGACCGTGAACTCTGGCATC+AGG | 0.476580 | 5_3:-30329869 | Msa0807650:three_prime_UTR |
| AACAGGACTGAATGAGCTAA+TGG | 0.478430 | 5_3:-30330948 | Msa0807650:intron |
| TATGCAAGCTTTGAGACTGC+TGG | 0.481178 | 5_3:-30329726 | Msa0807650:three_prime_UTR |
| AGAGTAAACATGCCAATTCT+GGG | 0.482441 | 5_3:+30330013 | None:intergenic |
| TGATGATTTACTACTACTAC+TGG | 0.483028 | 5_3:+30330901 | None:intergenic |
| TGATGATGAGAGACATGTTT+CGG | 0.483059 | 5_3:-30329138 | Msa0807650:three_prime_UTR |
| ATCAAGGACAGCTACTTCTT+CGG | 0.483365 | 5_3:+30330097 | None:intergenic |
| AGTGTGTAGACAGAGTCGTT+TGG | 0.483944 | 5_3:+30329969 | None:intergenic |
| GAAACAATGGTGCACTCAGC+TGG | 0.491991 | 5_3:+30330347 | None:intergenic |
| CTACAGAAAACTCATTTGGT+TGG | 0.492466 | 5_3:+30329646 | None:intergenic |
| GACTTTAAGGGAAATGGACT+CGG | 0.492549 | 5_3:+30330190 | None:intergenic |
| AATATTTATCAGATAGTAGT+GGG | 0.499526 | 5_3:-30329177 | Msa0807650:three_prime_UTR |
| GCCAAGATGACCGTGAACTC+TGG | 0.501551 | 5_3:-30329876 | Msa0807650:three_prime_UTR |
| TGAGGGAAAGACTGGGCACC+AGG | 0.502643 | 5_3:+30330131 | None:intergenic |
| TCAAATGAAAATAACAATGA+AGG | 0.513163 | 5_3:+30329287 | None:intergenic |
| CAGCTACTTCTTCGGAAAAG+TGG | 0.518616 | 5_3:+30330105 | None:intergenic |
| TGCAAGAATCTCATCCAGTT+GGG | 0.520638 | 5_3:+30330370 | None:intergenic |
| TGCTTTCTCTCTGTCTAAGC+CGG | 0.526097 | 5_3:+30329932 | None:intergenic |
| CACTGCTGTTTATGTGTCGA+AGG | 0.526482 | 5_3:-30329318 | Msa0807650:three_prime_UTR |
| AACTTCTTGATTCCACCGTT+AGG | 0.527282 | 5_3:+30330827 | None:intergenic |
| TATTCAATGAATTCTGTTGA+GGG | 0.527553 | 5_3:-30329795 | Msa0807650:three_prime_UTR |
| ACACTCGAGATGTGCATGAC+CGG | 0.532189 | 5_3:-30329951 | Msa0807650:three_prime_UTR |
| CTAGATCAACACTTAAGTGC+TGG | 0.535337 | 5_3:-30329470 | Msa0807650:three_prime_UTR |
| GTGCAAGAATCTCATCCAGT+TGG | 0.545202 | 5_3:+30330369 | None:intergenic |
| CTTCGGAAAAGTGGCGATGA+GGG | 0.545675 | 5_3:+30330114 | None:intergenic |
| ATCTTAAACCCCTCCCGTGA+GGG | 0.547240 | 5_3:+30330405 | None:intergenic |
| ATGCCAATTCTGGGCTTCAT+CGG | 0.548303 | 5_3:+30330022 | None:intergenic |
| GCTTTCCAAAGTAGCCATCA+AGG | 0.551420 | 5_3:+30330081 | None:intergenic |
| GTCTTCAATGCTGTATCCGA+GGG | 0.553166 | 5_3:+30330856 | None:intergenic |
| ATCTTCTGGAGTAACATGAA+TGG | 0.557011 | 5_3:+30329758 | None:intergenic |
| GAGCCTAGAAGGGCTTGGAA+TGG | 0.557133 | 5_3:-30329544 | Msa0807650:three_prime_UTR |
| AATGAATCTGAATGAATTGG+TGG | 0.561345 | 5_3:-30329688 | Msa0807650:three_prime_UTR |
| GTCAACATCGTCATTTGCTA+AGG | 0.561466 | 5_3:+30330322 | None:intergenic |
| TTCATGTTACTCCAGAAGAT+GGG | 0.561810 | 5_3:-30329755 | Msa0807650:three_prime_UTR |
| TACAATACTAAACAAATGAT+GGG | 0.562175 | 5_3:+30329068 | None:intergenic |
| TTATTCAATGAATTCTGTTG+AGG | 0.563786 | 5_3:-30329796 | Msa0807650:three_prime_UTR |
| AATGAGCTAATGGAGTCTAA+AGG | 0.565907 | 5_3:-30330938 | Msa0807650:exon |
| CGGCCAATTTCAATATGGGT+GGG | 0.578309 | 5_3:+30330210 | None:intergenic |
| GTGTCTTTCTGTTTGAACTG+TGG | 0.582506 | 5_3:-30330510 | Msa0807650:three_prime_UTR |
| CAATATTTATCAGATAGTAG+TGG | 0.583204 | 5_3:-30329178 | Msa0807650:three_prime_UTR |
| GTGAAGAGAGGAGCCTAGAA+GGG | 0.583585 | 5_3:-30329554 | Msa0807650:three_prime_UTR |
| CTAGAAGGGCTTGGAATGGG+TGG | 0.585068 | 5_3:-30329540 | Msa0807650:three_prime_UTR |
| GCAAGCAAGTCGTTTGAGCA+GGG | 0.585251 | 5_3:-30329606 | Msa0807650:three_prime_UTR |
| TTAGTATTGTATCCTGACAA+AGG | 0.589345 | 5_3:-30329056 | Msa0807650:three_prime_UTR |
| GTTTACTTGATAGAGTTGCA+TGG | 0.594564 | 5_3:+30329109 | None:intergenic |
| ATTGAAGACATTCGTCCTAA+CGG | 0.595565 | 5_3:-30330842 | Msa0807650:CDS |
| TCGGCCAATTTCAATATGGG+TGG | 0.595661 | 5_3:+30330209 | None:intergenic |
| AAAGCTTGGGTCAGGCAGCA+CGG | 0.596517 | 5_3:-30330063 | Msa0807650:three_prime_UTR |
| AAAGACACACAGAAGAAACA+AGG | 0.599383 | 5_3:+30330525 | None:intergenic |
| ACCAATTGCAGAAACTGCCA+TGG | 0.605456 | 5_3:+30330487 | None:intergenic |
| CTTAGACAGAGAGAAAGCAT+TGG | 0.606273 | 5_3:-30329928 | Msa0807650:three_prime_UTR |
| AAGAGTACAATCGCAAAGAG+AGG | 0.607802 | 5_3:+30330557 | None:intergenic |
| TGTCTTCAATGCTGTATCCG+AGG | 0.610451 | 5_3:+30330855 | None:intergenic |
| TCTGAATGAATTGGTGGTGA+AGG | 0.612452 | 5_3:-30329682 | Msa0807650:three_prime_UTR |
| TTACAGATACGGAGTGGGAA+GGG | 0.617832 | 5_3:+30331798 | None:intergenic |
| CTTACAGATACGGAGTGGGA+AGG | 0.617953 | 5_3:+30331797 | None:intergenic |
| AGGGATACTGTCGTGAAGAG+AGG | 0.619171 | 5_3:-30329566 | Msa0807650:three_prime_UTR |
| TCTTCGGAAAAGTGGCGATG+AGG | 0.619318 | 5_3:+30330113 | None:intergenic |
| TTATTCTACGAAGCTCCCCT+CGG | 0.625181 | 5_3:-30330872 | Msa0807650:CDS |
| AGAGTACAATCGCAAAGAGA+GGG | 0.626137 | 5_3:+30330558 | None:intergenic |
| TGATCTAGGCGAGCCACAGT+CGG | 0.631715 | 5_3:+30329485 | None:intergenic |
| TTTGTCAAGACTGCCGACTG+TGG | 0.633166 | 5_3:-30329498 | Msa0807650:three_prime_UTR |
| ATCAGTATGGAATATCAGGA+TGG | 0.643271 | 5_3:+30330675 | None:intergenic |
| AACGCTTACAGATACGGAGT+GGG | 0.645700 | 5_3:+30331793 | None:intergenic |
| GAGCTAATGGAGTCTAAAGG+AGG | 0.647473 | 5_3:-30330935 | Msa0807650:exon |
| TGGGCTCACGGAATCTGCAG+AGG | 0.650938 | 5_3:+30329989 | None:intergenic |
| AATACTAAACAAATGATGGG+TGG | 0.654569 | 5_3:+30329071 | None:intergenic |
| AAAGCGCGGAGAAAACGAGA+CGG | 0.658328 | 5_3:+30331821 | None:intergenic |
| ATTTGCTAAGGAAGAAACAA+TGG | 0.659529 | 5_3:+30330334 | None:intergenic |
| CGGAGTGGGAAGGGAAAGCG+CGG | 0.661519 | 5_3:+30331807 | None:intergenic |
| GCTGGACTCAGACAGAACAT+AGG | 0.663634 | 5_3:+30330298 | None:intergenic |
| AGCACGGCTTATATTATGGG+TGG | 0.666611 | 5_3:-30330047 | Msa0807650:three_prime_UTR |
| GATCTTAAACCCCTCCCGTG+AGG | 0.672665 | 5_3:+30330404 | None:intergenic |
| AAACGCTTACAGATACGGAG+TGG | 0.680499 | 5_3:+30331792 | None:intergenic |
| GTGGCGATGAGGGAAAGACT+GGG | 0.690654 | 5_3:+30330124 | None:intergenic |
| CCCTTAAAGTCAGATCTGTG+AGG | 0.691736 | 5_3:-30330178 | Msa0807650:three_prime_UTR |
| AAGATCATAATCAAAACCTG+TGG | 0.691808 | 5_3:-30330257 | Msa0807650:three_prime_UTR |
| GAAGACATTCGTCCTAACGG+TGG | 0.692317 | 5_3:-30330839 | Msa0807650:CDS |
| GAATTCATTGAATAACCACA+AGG | 0.720077 | 5_3:+30329804 | None:intergenic |
| ATATTTATCAGATAGTAGTG+GGG | 0.736280 | 5_3:-30329176 | Msa0807650:three_prime_UTR |
| AGATCTGTGAGGTACACCCG+AGG | 0.738828 | 5_3:-30330167 | Msa0807650:three_prime_UTR |
| TCTTCAATGCTGTATCCGAG+GGG | 0.754164 | 5_3:+30330857 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTCAATTGATTTTTTAT+TGG | - | chr5_3:30329667-30329686 | Msa0807650:three_prime_UTR | 10.0% |
| !! | TTATATAAAATCAAATTTCT+TGG | + | chr5_3:30329729-30329748 | None:intergenic | 10.0% |
| !! | TTTCATTTGTATTATCATTA+TGG | - | chr5_3:30329390-30329409 | Msa0807650:three_prime_UTR | 15.0% |
| !! | TAATCAGATATAATCTAATC+AGG | - | chr5_3:30329309-30329328 | Msa0807650:three_prime_UTR | 20.0% |
| !!! | AAGTGACAAAAAGTATTAAA+GGG | + | chr5_3:30329615-30329634 | None:intergenic | 20.0% |
| !!! | AAAGTGACAAAAAGTATTAA+AGG | + | chr5_3:30329616-30329635 | None:intergenic | 20.0% |
| !! | TAAAAAAATGAGACAGAATA+TGG | + | chr5_3:30329927-30329946 | None:intergenic | 20.0% |
| !! | ACAAGAGTTACAAAAAAAAT+TGG | + | chr5_3:30330232-30330251 | None:intergenic | 20.0% |
| !!! | AGCTTTTTTTGTTTTTGTTT+AGG | - | chr5_3:30330324-30330343 | Msa0807650:three_prime_UTR | 20.0% |
| !! | TCAAATGAAAATAACAATGA+AGG | + | chr5_3:30331659-30331678 | None:intergenic | 20.0% |
| !! | AATATTTATCAGATAGTAGT+GGG | - | chr5_3:30331766-30331785 | Msa0807650:intron | 20.0% |
| !! | TACAATACTAAACAAATGAT+GGG | + | chr5_3:30331878-30331897 | None:intergenic | 20.0% |
| !! | ATACAATACTAAACAAATGA+TGG | + | chr5_3:30331879-30331898 | None:intergenic | 20.0% |
| ! | GAAGAAAACGATAACAAAAA+CGG | + | chr5_3:30329188-30329207 | None:intergenic | 25.0% |
| ! | ACGAAAACTACAAAAATGAA+AGG | + | chr5_3:30329242-30329261 | None:intergenic | 25.0% |
| !! | TCAATCATTTAAAACCAAGA+TGG | + | chr5_3:30329693-30329712 | None:intergenic | 25.0% |
| !!! | TTTGTTTTAAGCCATTTTGT+TGG | - | chr5_3:30329878-30329897 | Msa0807650:three_prime_UTR | 25.0% |
| !! | TATCTGTGATTTTACAATGT+AGG | - | chr5_3:30329949-30329968 | Msa0807650:three_prime_UTR | 25.0% |
| !! | ATCTGTGATTTTACAATGTA+GGG | - | chr5_3:30329950-30329969 | Msa0807650:three_prime_UTR | 25.0% |
| !! | GGTTCTAACATTATTTCATA+TGG | - | chr5_3:30329971-30329990 | Msa0807650:three_prime_UTR | 25.0% |
| ! | ACATTATTTCATATGGTAAC+AGG | - | chr5_3:30329978-30329997 | Msa0807650:three_prime_UTR | 25.0% |
| ! | CATAGAATTCACAATATCAA+AGG | + | chr5_3:30330179-30330198 | None:intergenic | 25.0% |
| !!! | TTTGGAAAGATGTATTTTGA+AGG | + | chr5_3:30330365-30330384 | None:intergenic | 25.0% |
| ! | AAGTCACATATTTCAGAATT+TGG | + | chr5_3:30331109-30331128 | None:intergenic | 25.0% |
| ! | TTATTCAATGAATTCTGTTG+AGG | - | chr5_3:30331147-30331166 | Msa0807650:intron | 25.0% |
| ! | TATTCAATGAATTCTGTTGA+GGG | - | chr5_3:30331148-30331167 | Msa0807650:intron | 25.0% |
| !! | TTGAAATAAAGTGCATGTTT+TGG | - | chr5_3:30331687-30331706 | Msa0807650:five_prime_UTR | 25.0% |
| !! | TGAAATAAAGTGCATGTTTT+GGG | - | chr5_3:30331688-30331707 | Msa0807650:five_prime_UTR | 25.0% |
| ! | CAATATTTATCAGATAGTAG+TGG | - | chr5_3:30331765-30331784 | Msa0807650:intron | 25.0% |
| ! | ATATTTATCAGATAGTAGTG+GGG | - | chr5_3:30331767-30331786 | Msa0807650:intron | 25.0% |
| ! | TTGTCTCTCTTTTCTTTTCT+AGG | - | chr5_3:30329095-30329114 | Msa0807650:three_prime_UTR | 30.0% |
| ! | TGTCTCTCTTTTCTTTTCTA+GGG | - | chr5_3:30329096-30329115 | Msa0807650:three_prime_UTR | 30.0% |
| !!! | GTTTTCGTTTGATTTGATCT+TGG | - | chr5_3:30329254-30329273 | Msa0807650:three_prime_UTR | 30.0% |
| !!! | TTTTAAGGTTTTGAAAGCTG+CGG | - | chr5_3:30329281-30329300 | Msa0807650:three_prime_UTR | 30.0% |
| TCTGAATGAAAAGAAAGAAC+AGG | + | chr5_3:30329337-30329356 | None:intergenic | 30.0% | |
| TTGTCATGTCTATGATTATC+TGG | - | chr5_3:30329553-30329572 | Msa0807650:three_prime_UTR | 30.0% | |
| TGTCATGTCTATGATTATCT+GGG | - | chr5_3:30329554-30329573 | Msa0807650:three_prime_UTR | 30.0% | |
| AAAATTCCAACAAACAATCC+TGG | + | chr5_3:30329585-30329604 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTATTGGCCATCT+TGG | - | chr5_3:30329676-30329695 | Msa0807650:three_prime_UTR | 30.0% |
| TTAAAACAAAACACCCATCA+AGG | + | chr5_3:30329868-30329887 | None:intergenic | 30.0% | |
| TGATGATTTACTACTACTAC+TGG | + | chr5_3:30330045-30330064 | None:intergenic | 30.0% | |
| !!! | GTTTTGAAGGATTTGAAAAG+AGG | - | chr5_3:30330477-30330496 | Msa0807650:three_prime_UTR | 30.0% |
| ! | ATTTGCTAAGGAAGAAACAA+TGG | + | chr5_3:30330612-30330631 | None:intergenic | 30.0% |
| TCTTGTAGGCATAAACAAAA+AGG | + | chr5_3:30330670-30330689 | None:intergenic | 30.0% | |
| !!! | GGTTTTGATTATGATCTTGT+AGG | + | chr5_3:30330684-30330703 | None:intergenic | 30.0% |
| AAGATCATAATCAAAACCTG+TGG | - | chr5_3:30330686-30330705 | Msa0807650:exon | 30.0% | |
| GAATTCATTGAATAACCACA+AGG | + | chr5_3:30331142-30331161 | None:intergenic | 30.0% | |
| AGCAATGAATCTGAATGAAT+TGG | - | chr5_3:30331252-30331271 | Msa0807650:intron | 30.0% | |
| AATGAATCTGAATGAATTGG+TGG | - | chr5_3:30331255-30331274 | Msa0807650:intron | 30.0% | |
| ! | AATACTAAACAAATGATGGG+TGG | + | chr5_3:30331875-30331894 | None:intergenic | 30.0% |
| TTAGTATTGTATCCTGACAA+AGG | - | chr5_3:30331887-30331906 | Msa0807650:five_prime_UTR | 30.0% | |
| GAGAAAAACGCTTACAGATA+CGG | + | chr5_3:30329159-30329178 | None:intergenic | 35.0% | |
| ACGATAACAAAAACGGAAGA+AGG | + | chr5_3:30329181-30329200 | None:intergenic | 35.0% | |
| !! | TTCGTTTGATTTGATCTTGG+TGG | - | chr5_3:30329257-30329276 | Msa0807650:three_prime_UTR | 35.0% |
| !! | TCGTTTGATTTGATCTTGGT+GGG | - | chr5_3:30329258-30329277 | Msa0807650:three_prime_UTR | 35.0% |
| !!! | TTTGATCTTGGTGGGTTTTA+AGG | - | chr5_3:30329266-30329285 | Msa0807650:three_prime_UTR | 35.0% |
| ACACTCACTGTTAAACAAGT+AGG | + | chr5_3:30329839-30329858 | None:intergenic | 35.0% | |
| CTTCAATGGTACCAACAAAA+TGG | + | chr5_3:30329892-30329911 | None:intergenic | 35.0% | |
| ! | CATTTTGTTGGTACCATTGA+AGG | - | chr5_3:30329890-30329909 | Msa0807650:three_prime_UTR | 35.0% |
| GGCAAAAAAACATCCTTCAA+TGG | + | chr5_3:30329906-30329925 | None:intergenic | 35.0% | |
| AATGAGCTAATGGAGTCTAA+AGG | - | chr5_3:30330005-30330024 | Msa0807650:three_prime_UTR | 35.0% | |
| ATTGAAGACATTCGTCCTAA+CGG | - | chr5_3:30330101-30330120 | Msa0807650:three_prime_UTR | 35.0% | |
| ATCAGTATGGAATATCAGGA+TGG | + | chr5_3:30330271-30330290 | None:intergenic | 35.0% | |
| GAGAATCAGTATGGAATATC+AGG | + | chr5_3:30330275-30330294 | None:intergenic | 35.0% | |
| TAAAAAACTGCTTGCATGCA+GGG | + | chr5_3:30330302-30330321 | None:intergenic | 35.0% | |
| ATAAAAAACTGCTTGCATGC+AGG | + | chr5_3:30330303-30330322 | None:intergenic | 35.0% | |
| AAAGACACACAGAAGAAACA+AGG | + | chr5_3:30330421-30330440 | None:intergenic | 35.0% | |
| !!! | GTTTCTGCAATTGGTTTTGA+AGG | - | chr5_3:30330464-30330483 | Msa0807650:three_prime_UTR | 35.0% |
| TGAAGGATTTGAAAAGAGGT+TGG | - | chr5_3:30330481-30330500 | Msa0807650:three_prime_UTR | 35.0% | |
| AATCCCACCCATATTGAAAT+TGG | - | chr5_3:30330730-30330749 | Msa0807650:intron | 35.0% | |
| ! | AGATCTGACTTTAAGGGAAA+TGG | + | chr5_3:30330762-30330781 | None:intergenic | 35.0% |
| AGAGTAAACATGCCAATTCT+GGG | + | chr5_3:30330933-30330952 | None:intergenic | 35.0% | |
| !! | GACTTTGATTTTGAACCTTG+TGG | - | chr5_3:30331124-30331143 | Msa0807650:intron | 35.0% |
| !! | ATCTTCTGGAGTAACATGAA+TGG | + | chr5_3:30331188-30331207 | None:intergenic | 35.0% |
| ATTCATGTTACTCCAGAAGA+TGG | - | chr5_3:30331187-30331206 | Msa0807650:intron | 35.0% | |
| TTCATGTTACTCCAGAAGAT+GGG | - | chr5_3:30331188-30331207 | Msa0807650:intron | 35.0% | |
| CTACAGAAAACTCATTTGGT+TGG | + | chr5_3:30331300-30331319 | None:intergenic | 35.0% | |
| ACAGCTACAGAAAACTCATT+TGG | + | chr5_3:30331304-30331323 | None:intergenic | 35.0% | |
| ! | TAAATAAGTGTCGCCTATTC+AGG | - | chr5_3:30331559-30331578 | Msa0807650:intron | 35.0% |
| ! | TGATGATGAGAGACATGTTT+CGG | - | chr5_3:30331805-30331824 | Msa0807650:five_prime_UTR | 35.0% |
| GTTTACTTGATAGAGTTGCA+TGG | + | chr5_3:30331837-30331856 | None:intergenic | 35.0% | |
| TGTACTCGATCTAATGTGCA+TGG | - | chr5_3:30329511-30329530 | Msa0807650:three_prime_UTR | 40.0% | |
| TTCCAACAAACAATCCTGGT+AGG | + | chr5_3:30329581-30329600 | None:intergenic | 40.0% | |
| TGAGTGTGCAAATCCTTGAT+GGG | - | chr5_3:30329852-30329871 | Msa0807650:three_prime_UTR | 40.0% | |
| AACAGGACTGAATGAGCTAA+TGG | - | chr5_3:30329995-30330014 | Msa0807650:three_prime_UTR | 40.0% | |
| AACTTCTTGATTCCACCGTT+AGG | + | chr5_3:30330119-30330138 | None:intergenic | 40.0% | |
| AGGTGAATGAACACTTACGT+TGG | + | chr5_3:30330159-30330178 | None:intergenic | 40.0% | |
| AAAAAACTGCTTGCATGCAG+GGG | + | chr5_3:30330301-30330320 | None:intergenic | 40.0% | |
| AGAGTACAATCGCAAAGAGA+GGG | + | chr5_3:30330388-30330407 | None:intergenic | 40.0% | |
| ! | AAGAGTACAATCGCAAAGAG+AGG | + | chr5_3:30330389-30330408 | None:intergenic | 40.0% |
| GTGTCTTTCTGTTTGAACTG+TGG | - | chr5_3:30330433-30330452 | Msa0807650:three_prime_UTR | 40.0% | |
| ATCTCTCACAAAATCCCAAC+TGG | - | chr5_3:30330559-30330578 | Msa0807650:three_prime_UTR | 40.0% | |
| TGCAAGAATCTCATCCAGTT+GGG | + | chr5_3:30330576-30330595 | None:intergenic | 40.0% | |
| ! | GTCAACATCGTCATTTGCTA+AGG | + | chr5_3:30330624-30330643 | None:intergenic | 40.0% |
| GTAGGCATAAACAAAAAGGC+TGG | + | chr5_3:30330666-30330685 | None:intergenic | 40.0% | |
| ! | CAGTAATTTGGTAGTACCAC+AGG | + | chr5_3:30330705-30330724 | None:intergenic | 40.0% |
| TGGGATTGCAAGCAGTAATT+TGG | + | chr5_3:30330717-30330736 | None:intergenic | 40.0% | |
| GACTCGGCCAATTTCAATAT+GGG | + | chr5_3:30330740-30330759 | None:intergenic | 40.0% | |
| ! | GACTTTAAGGGAAATGGACT+CGG | + | chr5_3:30330756-30330775 | None:intergenic | 40.0% |
| CCTCACAGATCTGACTTTAA+GGG | + | chr5_3:30330768-30330787 | None:intergenic | 40.0% | |
| ACCTCACAGATCTGACTTTA+AGG | + | chr5_3:30330769-30330788 | None:intergenic | 40.0% | |
| AGGAAAAATGAAACTGCCTC+GGG | + | chr5_3:30330795-30330814 | None:intergenic | 40.0% | |
| CAGGAAAAATGAAACTGCCT+CGG | + | chr5_3:30330796-30330815 | None:intergenic | 40.0% | |
| ATCAAGGACAGCTACTTCTT+CGG | + | chr5_3:30330849-30330868 | None:intergenic | 40.0% | |
| ! | ATGGCTACTTTGGAAAGCTT+GGG | - | chr5_3:30330867-30330886 | Msa0807650:CDS | 40.0% |
| CAGAGTAAACATGCCAATTC+TGG | + | chr5_3:30330934-30330953 | None:intergenic | 40.0% | |
| ! | CTTAGACAGAGAGAAAGCAT+TGG | - | chr5_3:30331015-30331034 | Msa0807650:intron | 40.0% |
| !! | TCTGAATGAATTGGTGGTGA+AGG | - | chr5_3:30331261-30331280 | Msa0807650:intron | 40.0% |
| ! | GTTTTCTGTAGCTGTTCATG+TGG | - | chr5_3:30331309-30331328 | Msa0807650:intron | 40.0% |
| !! | CAGCACTTAAGTGTTGATCT+AGG | + | chr5_3:30331475-30331494 | None:intergenic | 40.0% |
| CTAGATCAACACTTAAGTGC+TGG | - | chr5_3:30331473-30331492 | Msa0807650:intron | 40.0% | |
| ! | AGGCGTGAACTCATTGTTTT+CGG | - | chr5_3:30331579-30331598 | Msa0807650:intron | 40.0% |
| !!! | GATGGGTGGTTAGTTTTACA+AGG | + | chr5_3:30331861-30331880 | None:intergenic | 40.0% |
| TTACAGATACGGAGTGGGAA+GGG | + | chr5_3:30329148-30329167 | None:intergenic | 45.0% | |
| AACGCTTACAGATACGGAGT+GGG | + | chr5_3:30329153-30329172 | None:intergenic | 45.0% | |
| AAACGCTTACAGATACGGAG+TGG | + | chr5_3:30329154-30329173 | None:intergenic | 45.0% | |
| ! | ATGATTATCTGGGACCTACC+AGG | - | chr5_3:30329564-30329583 | Msa0807650:three_prime_UTR | 45.0% |
| GACCTACCAGGATTGTTTGT+TGG | - | chr5_3:30329576-30329595 | Msa0807650:three_prime_UTR | 45.0% | |
| GTGAGTGTGCAAATCCTTGA+TGG | - | chr5_3:30329851-30329870 | Msa0807650:three_prime_UTR | 45.0% | |
| GAGCTAATGGAGTCTAAAGG+AGG | - | chr5_3:30330008-30330027 | Msa0807650:three_prime_UTR | 45.0% | |
| TTATTCTACGAAGCTCCCCT+CGG | - | chr5_3:30330071-30330090 | Msa0807650:three_prime_UTR | 45.0% | |
| TCTTCAATGCTGTATCCGAG+GGG | + | chr5_3:30330089-30330108 | None:intergenic | 45.0% | |
| GTCTTCAATGCTGTATCCGA+GGG | + | chr5_3:30330090-30330109 | None:intergenic | 45.0% | |
| TGTCTTCAATGCTGTATCCG+AGG | + | chr5_3:30330091-30330110 | None:intergenic | 45.0% | |
| ACAATCGCAAAGAGAGGGTT+TGG | + | chr5_3:30330383-30330402 | None:intergenic | 45.0% | |
| TTCTGTTTGAACTGTGGCCA+TGG | - | chr5_3:30330439-30330458 | Msa0807650:three_prime_UTR | 45.0% | |
| ACCAATTGCAGAAACTGCCA+TGG | + | chr5_3:30330459-30330478 | None:intergenic | 45.0% | |
| ! | GAAATTTCCTTTTCCGACCC+TGG | - | chr5_3:30330503-30330522 | Msa0807650:three_prime_UTR | 45.0% |
| AAAAAGTCCAGGGTCGGAAA+AGG | + | chr5_3:30330513-30330532 | None:intergenic | 45.0% | |
| GTCAGAAAAAAGTCCAGGGT+CGG | + | chr5_3:30330519-30330538 | None:intergenic | 45.0% | |
| GAGGGTCAGAAAAAAGTCCA+GGG | + | chr5_3:30330523-30330542 | None:intergenic | 45.0% | |
| TGAGGGTCAGAAAAAAGTCC+AGG | + | chr5_3:30330524-30330543 | None:intergenic | 45.0% | |
| !!! | GGACTTTTTTCTGACCCTCA+CGG | - | chr5_3:30330524-30330543 | Msa0807650:three_prime_UTR | 45.0% |
| !!! | GACTTTTTTCTGACCCTCAC+GGG | - | chr5_3:30330525-30330544 | Msa0807650:three_prime_UTR | 45.0% |
| GTGCAAGAATCTCATCCAGT+TGG | + | chr5_3:30330577-30330596 | None:intergenic | 45.0% | |
| CGGCCAATTTCAATATGGGT+GGG | + | chr5_3:30330736-30330755 | None:intergenic | 45.0% | |
| TCGGCCAATTTCAATATGGG+TGG | + | chr5_3:30330737-30330756 | None:intergenic | 45.0% | |
| GGACTCGGCCAATTTCAATA+TGG | + | chr5_3:30330741-30330760 | None:intergenic | 45.0% | |
| CCCTTAAAGTCAGATCTGTG+AGG | - | chr5_3:30330765-30330784 | Msa0807650:intron | 45.0% | |
| !! | CGAGGCAGTTTCATTTTTCC+TGG | - | chr5_3:30330794-30330813 | Msa0807650:intron | 45.0% |
| CAGCTACTTCTTCGGAAAAG+TGG | + | chr5_3:30330841-30330860 | None:intergenic | 45.0% | |
| GAAGAAGTAGCTGTCCTTGA+TGG | - | chr5_3:30330848-30330867 | Msa0807650:CDS | 45.0% | |
| GCTTTCCAAAGTAGCCATCA+AGG | + | chr5_3:30330865-30330884 | None:intergenic | 45.0% | |
| ! | GATGGCTACTTTGGAAAGCT+TGG | - | chr5_3:30330866-30330885 | Msa0807650:CDS | 45.0% |
| ! | TACTTTGGAAAGCTTGGGTC+AGG | - | chr5_3:30330872-30330891 | Msa0807650:CDS | 45.0% |
| AGGCAGCACGGCTTATATTA+TGG | - | chr5_3:30330892-30330911 | Msa0807650:CDS | 45.0% | |
| GGCAGCACGGCTTATATTAT+GGG | - | chr5_3:30330893-30330912 | Msa0807650:CDS | 45.0% | |
| AGCACGGCTTATATTATGGG+TGG | - | chr5_3:30330896-30330915 | Msa0807650:CDS | 45.0% | |
| ATGCCAATTCTGGGCTTCAT+CGG | + | chr5_3:30330924-30330943 | None:intergenic | 45.0% | |
| GTGTGTAGACAGAGTCGTTT+GGG | + | chr5_3:30330976-30330995 | None:intergenic | 45.0% | |
| AGTGTGTAGACAGAGTCGTT+TGG | + | chr5_3:30330977-30330996 | None:intergenic | 45.0% | |
| TGCTTTCTCTCTGTCTAAGC+CGG | + | chr5_3:30331014-30331033 | None:intergenic | 45.0% | |
| TTTCCTGATGCCAGAGTTCA+CGG | + | chr5_3:30331080-30331099 | None:intergenic | 45.0% | |
| GCATAACTGAACCCATCTTC+TGG | + | chr5_3:30331202-30331221 | None:intergenic | 45.0% | |
| !! | TATGCAAGCTTTGAGACTGC+TGG | - | chr5_3:30331217-30331236 | Msa0807650:intron | 45.0% |
| GGTTGTTCGCTGGATGTTAA+GGG | - | chr5_3:30331358-30331377 | Msa0807650:intron | 45.0% | |
| ! | CGGCAGTCTTGACAAACTTT+TGG | + | chr5_3:30331441-30331460 | None:intergenic | 45.0% |
| CAATGAGTTCACGCCTGAAT+AGG | + | chr5_3:30331575-30331594 | None:intergenic | 45.0% | |
| ! | CACTGCTGTTTATGTGTCGA+AGG | - | chr5_3:30331625-30331644 | Msa0807650:intron | 45.0% |
| !!! | TATATAATTATTTTATAACA+TGG | - | chr5_3:30329742-30329761 | Msa0807650:three_prime_UTR | 5.0% |
| AAAGCGCGGAGAAAACGAGA+CGG | + | chr5_3:30329125-30329144 | None:intergenic | 50.0% | |
| CTTACAGATACGGAGTGGGA+AGG | + | chr5_3:30329149-30329168 | None:intergenic | 50.0% | |
| GAAGACATTCGTCCTAACGG+TGG | - | chr5_3:30330104-30330123 | Msa0807650:three_prime_UTR | 50.0% | |
| CAGGGGAACGAGAATCAGTA+TGG | + | chr5_3:30330284-30330303 | None:intergenic | 50.0% | |
| GCCATGGCAGTTTCTGCAAT+TGG | - | chr5_3:30330455-30330474 | Msa0807650:three_prime_UTR | 50.0% | |
| !!! | TTTTTTCTGACCCTCACGGG+AGG | - | chr5_3:30330528-30330547 | Msa0807650:three_prime_UTR | 50.0% |
| ! | TTTTTCTGACCCTCACGGGA+GGG | - | chr5_3:30330529-30330548 | Msa0807650:three_prime_UTR | 50.0% |
| ATCTTAAACCCCTCCCGTGA+GGG | + | chr5_3:30330541-30330560 | None:intergenic | 50.0% | |
| GAAACAATGGTGCACTCAGC+TGG | + | chr5_3:30330599-30330618 | None:intergenic | 50.0% | |
| GCTGGACTCAGACAGAACAT+AGG | + | chr5_3:30330648-30330667 | None:intergenic | 50.0% | |
| CTTCGGAAAAGTGGCGATGA+GGG | + | chr5_3:30330832-30330851 | None:intergenic | 50.0% | |
| TCTTCGGAAAAGTGGCGATG+AGG | + | chr5_3:30330833-30330852 | None:intergenic | 50.0% | |
| ! | GCTGTCCTTGATGGCTACTT+TGG | - | chr5_3:30330857-30330876 | Msa0807650:CDS | 50.0% |
| GATCCGATGAAGCCCAGAAT+TGG | - | chr5_3:30330918-30330937 | Msa0807650:CDS | 50.0% | |
| ACACTCGAGATGTGCATGAC+CGG | - | chr5_3:30330992-30331011 | Msa0807650:intron | 50.0% | |
| TGCAAGCAAGTCGTTTGAGC+AGG | - | chr5_3:30331336-30331355 | Msa0807650:intron | 50.0% | |
| GCAAGCAAGTCGTTTGAGCA+GGG | - | chr5_3:30331337-30331356 | Msa0807650:intron | 50.0% | |
| GGGTTGTTCGCTGGATGTTA+AGG | - | chr5_3:30331357-30331376 | Msa0807650:intron | 50.0% | |
| AGGGATACTGTCGTGAAGAG+AGG | - | chr5_3:30331377-30331396 | Msa0807650:intron | 50.0% | |
| GTGAAGAGAGGAGCCTAGAA+GGG | - | chr5_3:30331389-30331408 | Msa0807650:intron | 50.0% | |
| AGCCTAGAAGGGCTTGGAAT+GGG | - | chr5_3:30331400-30331419 | Msa0807650:intron | 50.0% | |
| ! | TTTGTCAAGACTGCCGACTG+TGG | - | chr5_3:30331445-30331464 | Msa0807650:intron | 50.0% |
| ! | TTTTCTGACCCTCACGGGAG+GGG | - | chr5_3:30330530-30330549 | Msa0807650:three_prime_UTR | 55.0% |
| GATCTTAAACCCCTCCCGTG+AGG | + | chr5_3:30330542-30330561 | None:intergenic | 55.0% | |
| AGATCTGTGAGGTACACCCG+AGG | - | chr5_3:30330776-30330795 | Msa0807650:intron | 55.0% | |
| GTGGCGATGAGGGAAAGACT+GGG | + | chr5_3:30330822-30330841 | None:intergenic | 55.0% | |
| AGTGGCGATGAGGGAAAGAC+TGG | + | chr5_3:30330823-30330842 | None:intergenic | 55.0% | |
| AAAGCTTGGGTCAGGCAGCA+CGG | - | chr5_3:30330880-30330899 | Msa0807650:CDS | 55.0% | |
| GACAGAGTCGTTTGGGCTCA+CGG | + | chr5_3:30330969-30330988 | None:intergenic | 55.0% | |
| GCCAAGATGACCGTGAACTC+TGG | - | chr5_3:30331067-30331086 | Msa0807650:intron | 55.0% | |
| GCCAGAGTTCACGGTCATCT+TGG | + | chr5_3:30331071-30331090 | None:intergenic | 55.0% | |
| TGACCGTGAACTCTGGCATC+AGG | - | chr5_3:30331074-30331093 | Msa0807650:intron | 55.0% | |
| GTTTGAGCAGGGTTGTTCGC+TGG | - | chr5_3:30331348-30331367 | Msa0807650:intron | 55.0% | |
| CGTGAAGAGAGGAGCCTAGA+AGG | - | chr5_3:30331388-30331407 | Msa0807650:intron | 55.0% | |
| GAGCCTAGAAGGGCTTGGAA+TGG | - | chr5_3:30331399-30331418 | Msa0807650:intron | 55.0% | |
| CACCCATTCCAAGCCCTTCT+AGG | + | chr5_3:30331405-30331424 | None:intergenic | 55.0% | |
| CTAGAAGGGCTTGGAATGGG+TGG | - | chr5_3:30331403-30331422 | Msa0807650:intron | 55.0% | |
| TGATCTAGGCGAGCCACAGT+CGG | + | chr5_3:30331461-30331480 | None:intergenic | 55.0% | |
| TGAGGGAAAGACTGGGCACC+AGG | + | chr5_3:30330815-30330834 | None:intergenic | 60.0% | |
| TGGGCTCACGGAATCTGCAG+AGG | + | chr5_3:30330957-30330976 | None:intergenic | 60.0% | |
| GAGAGGAGCCTAGAAGGGCT+TGG | - | chr5_3:30331394-30331413 | Msa0807650:intron | 60.0% | |
| CGGAGTGGGAAGGGAAAGCG+CGG | + | chr5_3:30329139-30329158 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 30329054 | 30331911 | 30329054 | ID=Msa0807650;Name=Msa0807650 |
| chr5_3 | mRNA | 30329054 | 30331911 | 30329054 | ID=Msa0807650-mRNA-1;Parent=Msa0807650;Name=Msa0807650-mRNA-1;_AED=0.02;_eAED=0.02;_QI=200|1|1|1|0.33|0.5|4|1635|55 |
| chr5_3 | exon | 30329054 | 30330709 | 30329054 | ID=Msa0807650-mRNA-1:exon:10225;Parent=Msa0807650-mRNA-1 |
| chr5_3 | exon | 30330805 | 30330965 | 30330805 | ID=Msa0807650-mRNA-1:exon:10224;Parent=Msa0807650-mRNA-1 |
| chr5_3 | exon | 30331635 | 30331710 | 30331635 | ID=Msa0807650-mRNA-1:exon:10223;Parent=Msa0807650-mRNA-1 |
| chr5_3 | exon | 30331802 | 30331911 | 30331802 | ID=Msa0807650-mRNA-1:exon:10222;Parent=Msa0807650-mRNA-1 |
| chr5_3 | five_prime_UTR | 30331802 | 30331911 | 30331802 | ID=Msa0807650-mRNA-1:five_prime_utr;Parent=Msa0807650-mRNA-1 |
| chr5_3 | five_prime_UTR | 30331635 | 30331710 | 30331635 | ID=Msa0807650-mRNA-1:five_prime_utr;Parent=Msa0807650-mRNA-1 |
| chr5_3 | five_prime_UTR | 30330952 | 30330965 | 30330952 | ID=Msa0807650-mRNA-1:five_prime_utr;Parent=Msa0807650-mRNA-1 |
| chr5_3 | CDS | 30330805 | 30330951 | 30330805 | ID=Msa0807650-mRNA-1:cds;Parent=Msa0807650-mRNA-1 |
| chr5_3 | CDS | 30330689 | 30330709 | 30330689 | ID=Msa0807650-mRNA-1:cds;Parent=Msa0807650-mRNA-1 |
| chr5_3 | three_prime_UTR | 30329054 | 30330688 | 30329054 | ID=Msa0807650-mRNA-1:three_prime_utr;Parent=Msa0807650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
