Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807810 | sp|Q9C540|ACFR4_ARATH | 63.710 | 248 | 73 | 4 | 1 | 243 | 1 | 236 | 6.81e-96 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807810 | G7JX23 | 96.694 | 242 | 7 | 1 | 2 | 243 | 4 | 244 | 1.37e-165 | 466 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0710800 | Msa0807810 | 0.823519 | 1.326082e-53 | -8.615850e-47 |
| Msa0770720 | Msa0807810 | 0.814413 | 1.560085e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807810 | MtrunA17_Chr5g0422371 | 96.694 | 242 | 7 | 1 | 2 | 243 | 4 | 244 | 2.64e-169 | 466 |
| Msa0807810 | MtrunA17_Chr6g0456901 | 44.843 | 223 | 118 | 3 | 6 | 227 | 5 | 223 | 1.65e-60 | 190 |
| Msa0807810 | MtrunA17_Chr1g0203371 | 41.204 | 216 | 119 | 4 | 10 | 223 | 8 | 217 | 2.48e-47 | 156 |
| Msa0807810 | MtrunA17_Chr1g0161921 | 39.151 | 212 | 117 | 4 | 16 | 225 | 16 | 217 | 2.25e-42 | 143 |
| Msa0807810 | MtrunA17_Chr1g0161941 | 33.333 | 207 | 129 | 5 | 15 | 220 | 9 | 207 | 1.52e-31 | 115 |
| Msa0807810 | MtrunA17_Chr8g0375991 | 35.122 | 205 | 120 | 6 | 15 | 217 | 9 | 202 | 5.17e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807810 | AT1G26100.1 | 63.710 | 248 | 73 | 4 | 1 | 243 | 1 | 236 | 6.92e-97 | 283 |
| Msa0807810 | AT5G38630.1 | 46.222 | 225 | 109 | 6 | 11 | 229 | 10 | 228 | 3.77e-62 | 194 |
| Msa0807810 | AT4G25570.1 | 39.437 | 213 | 123 | 4 | 10 | 221 | 8 | 215 | 2.43e-44 | 149 |
| Msa0807810 | AT4G25570.2 | 39.437 | 213 | 123 | 4 | 10 | 221 | 49 | 256 | 7.90e-44 | 149 |
| Msa0807810 | AT1G14730.1 | 30.698 | 215 | 137 | 4 | 15 | 227 | 20 | 224 | 2.30e-23 | 94.7 |
Find 74 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTAGCTTCTGGGATATT+TGG | 0.112597 | 5_3:+31036872 | Msa0807810:CDS |
| TAGCATTTCTTGTTCTCTTC+TGG | 0.118815 | 5_3:+31036402 | Msa0807810:CDS |
| CCTTAGTGGCTTTGTTATTC+TGG | 0.121532 | 5_3:+31038631 | Msa0807810:CDS |
| CAAGGGGTGGCTTTAGCTTC+TGG | 0.175443 | 5_3:+31036863 | Msa0807810:CDS |
| GAATGTTTGTGCAGCAATTT+TGG | 0.224729 | 5_3:+31036784 | Msa0807810:intron |
| ACTCTTGCAAGAAAGATTAA+AGG | 0.256390 | 5_3:-31036365 | None:intergenic |
| TTGATTTGTGTATCCCTCTT+TGG | 0.260850 | 5_3:+31036965 | Msa0807810:CDS |
| TAATAGGCTTCTTGAACTTT+TGG | 0.266466 | 5_3:+31038408 | Msa0807810:CDS |
| CACATTTAGTTCAGTTGTTA+TGG | 0.266715 | 5_3:+31036316 | Msa0807810:exon |
| CTTTAGCTTCTGGGATATTT+GGG | 0.267158 | 5_3:+31036873 | Msa0807810:CDS |
| TTACCATGGCATGTATTTCT+TGG | 0.277630 | 5_3:+31038467 | Msa0807810:CDS |
| CTTCTGGGATATTTGGGATT+TGG | 0.279862 | 5_3:+31036879 | Msa0807810:CDS |
| ATTTCTACAGCCTTCATTCA+TGG | 0.299138 | 5_3:+31036936 | Msa0807810:CDS |
| TCCTGTTGAGGAAGGGAATT+AGG | 0.300886 | 5_3:-31036458 | None:intergenic |
| CATCCTGTGCTCATGGTCAT+TGG | 0.303410 | 5_3:+31036622 | Msa0807810:CDS |
| AAGGGGTGGCTTTAGCTTCT+GGG | 0.303519 | 5_3:+31036864 | Msa0807810:CDS |
| ATCTTTCTTGCAAGAGTTTG+TGG | 0.313065 | 5_3:+31036371 | Msa0807810:CDS |
| AGCATTTCTTGTTCTCTTCT+GGG | 0.319777 | 5_3:+31036403 | Msa0807810:CDS |
| TACTACCTTCTCCACTTAAA+AGG | 0.321243 | 5_3:-31036651 | None:intergenic |
| CCACAATCCCATCATTTACT+TGG | 0.326307 | 5_3:-31036910 | None:intergenic |
| TCCATGGTTGTAAATTCTTT+AGG | 0.339651 | 5_3:+31038593 | Msa0807810:CDS |
| GCAGTAGCAACGGCTGAAAC+TGG | 0.360280 | 5_3:+31038509 | Msa0807810:CDS |
| TTAGGTCTTGCTCTCCTTAG+TGG | 0.363802 | 5_3:+31038617 | Msa0807810:CDS |
| TTGTTAGAATTTAGATATCT+TGG | 0.364277 | 5_3:+31038775 | Msa0807810:three_prime_UTR |
| GTTGTAAATTCTTTAGGCTT+AGG | 0.366014 | 5_3:+31038599 | Msa0807810:CDS |
| TCCTAATTCCCTTCCTCAAC+AGG | 0.379140 | 5_3:+31036457 | Msa0807810:CDS |
| CCTAAGTATCAAATTCTTCA+AGG | 0.384117 | 5_3:+31038665 | Msa0807810:CDS |
| CCTTGAAGAATTTGATACTT+AGG | 0.393626 | 5_3:-31038665 | None:intergenic |
| TGTATCCCTCTTTGGAGCTC+AGG | 0.406685 | 5_3:+31036973 | Msa0807810:CDS |
| TAGATGGTTGCCTGGGTCAA+GGG | 0.416984 | 5_3:+31036811 | Msa0807810:CDS |
| CTGCCAATGCATAAGTGTAT+AGG | 0.426996 | 5_3:-31038490 | None:intergenic |
| AAATGCGAACAGTGAGGATA+AGG | 0.435065 | 5_3:+31038441 | Msa0807810:CDS |
| ACAAAATTCCAAGTAAATGA+TGG | 0.437217 | 5_3:+31036902 | Msa0807810:CDS |
| CTCACTACTAACTACACTCT+TGG | 0.437231 | 5_3:-31036259 | None:intergenic |
| CTCTTGCAAGAAAGATTAAA+GGG | 0.441600 | 5_3:-31036364 | None:intergenic |
| TACAGCCTTCATTCATGGAT+GGG | 0.445813 | 5_3:+31036941 | Msa0807810:CDS |
| CATGGACTCAGTGCTGTGTT+TGG | 0.448440 | 5_3:-31038576 | None:intergenic |
| ATAGATGGTTGCCTGGGTCA+AGG | 0.449560 | 5_3:+31036810 | Msa0807810:CDS |
| TCGGTGCATTTATGTCTTCA+AGG | 0.466772 | 5_3:+31036845 | Msa0807810:CDS |
| TTGGTGCATAGATGGTTGCC+TGG | 0.471390 | 5_3:+31036803 | Msa0807810:CDS |
| GGTTCTCCATCCTGTGCTCA+TGG | 0.477323 | 5_3:+31036615 | Msa0807810:intron |
| GAAGGGAATTAGGAGTATTG+AGG | 0.479759 | 5_3:-31036448 | None:intergenic |
| CTACAGCCTTCATTCATGGA+TGG | 0.480089 | 5_3:+31036940 | Msa0807810:CDS |
| AGATGGTTGCCTGGGTCAAG+GGG | 0.483244 | 5_3:+31036812 | Msa0807810:CDS |
| CCAGAATAACAAAGCCACTA+AGG | 0.497367 | 5_3:-31038631 | None:intergenic |
| CGGTGCATTTATGTCTTCAA+GGG | 0.507370 | 5_3:+31036846 | Msa0807810:CDS |
| TCACTGTTCGCATTTCTCCT+CGG | 0.512543 | 5_3:-31038433 | None:intergenic |
| CAAACACAGCACTGAGTCCA+TGG | 0.530906 | 5_3:+31038577 | Msa0807810:CDS |
| CAAAATTCCAAGTAAATGAT+GGG | 0.535853 | 5_3:+31036903 | Msa0807810:CDS |
| CCAAGTAAATGATGGGATTG+TGG | 0.538655 | 5_3:+31036910 | Msa0807810:CDS |
| TCAAACCCATCCATGAATGA+AGG | 0.539092 | 5_3:-31036946 | None:intergenic |
| AGATGAGATCCTGTTGAGGA+AGG | 0.539802 | 5_3:-31036466 | None:intergenic |
| GCATTTATGTCTTCAAGGGG+TGG | 0.549961 | 5_3:+31036850 | Msa0807810:CDS |
| TGGTCACAAGCGAATTAAGA+TGG | 0.551793 | 5_3:+31038795 | Msa0807810:three_prime_UTR |
| TGGCCTATACACTTATGCAT+TGG | 0.552843 | 5_3:+31038487 | Msa0807810:CDS |
| GATGAGATCCTGTTGAGGAA+GGG | 0.569609 | 5_3:-31036465 | None:intergenic |
| CTACTAACTACACTCTTGGA+TGG | 0.573561 | 5_3:-31036255 | None:intergenic |
| AGGCCAAGAAATACATGCCA+TGG | 0.575316 | 5_3:-31038470 | None:intergenic |
| ATTAAAGGGAGTAGTTGTGA+GGG | 0.577601 | 5_3:-31036350 | None:intergenic |
| GATTAAAGGGAGTAGTTGTG+AGG | 0.578021 | 5_3:-31036351 | None:intergenic |
| TTATGCATTGGCAGTAGCAA+CGG | 0.579204 | 5_3:+31038499 | Msa0807810:CDS |
| TGGTGCATAGATGGTTGCCT+GGG | 0.586545 | 5_3:+31036804 | Msa0807810:CDS |
| GCCTAAAGAATTTACAACCA+TGG | 0.590393 | 5_3:-31038594 | None:intergenic |
| AGTAGTGAGTGACTAGTGAG+AGG | 0.607699 | 5_3:+31036273 | Msa0807810:five_prime_UTR |
| AAACCAATGACCATGAGCAC+AGG | 0.612548 | 5_3:-31036625 | None:intergenic |
| GATGGTTGCCTGGGTCAAGG+GGG | 0.624454 | 5_3:+31036813 | Msa0807810:CDS |
| CAATGACCATGAGCACAGGA+TGG | 0.626720 | 5_3:-31036621 | None:intergenic |
| TACTCACCTGAGCTCCAAAG+AGG | 0.638028 | 5_3:-31036979 | None:intergenic |
| ACTCACCTGAGCTCCAAAGA+GGG | 0.638153 | 5_3:-31036978 | None:intergenic |
| GGTGCATTTATGTCTTCAAG+GGG | 0.646132 | 5_3:+31036847 | Msa0807810:CDS |
| GCATAGATGAGATCCTGTTG+AGG | 0.669004 | 5_3:-31036470 | None:intergenic |
| TGAGGATAAGGATCTTACCA+TGG | 0.703662 | 5_3:+31038453 | Msa0807810:CDS |
| TAGTTGTGAGGGAAAGACAG+TGG | 0.717851 | 5_3:-31036339 | None:intergenic |
| GAGGAGAAATGCGAACAGTG+AGG | 0.732322 | 5_3:+31038435 | Msa0807810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTAAATTAATTTTTACTT+AGG | + | chr5_3:31037040-31037059 | Msa0807810:intron | 10.0% |
| !!! | TTTAAAAAATTTTATGGTAT+AGG | - | chr5_3:31037436-31037455 | None:intergenic | 10.0% |
| !! | GATTATTATAAACAATAAAA+TGG | - | chr5_3:31038059-31038078 | None:intergenic | 10.0% |
| !!! | CGAAATAAATTATAATTTTT+CGG | - | chr5_3:31038146-31038165 | None:intergenic | 10.0% |
| !!! | GTTATTTAAATAATTTTTTC+GGG | + | chr5_3:31038192-31038211 | Msa0807810:intron | 10.0% |
| !! | ATTAAAATAAAGATTATGCA+TGG | - | chr5_3:31036591-31036610 | None:intergenic | 15.0% |
| !!! | ATAATCTTTATTTTAATTGC+AGG | + | chr5_3:31036594-31036613 | Msa0807810:intron | 15.0% |
| !!! | AATTTAATTTCTTGATGAAT+AGG | - | chr5_3:31037143-31037162 | None:intergenic | 15.0% |
| !!! | TTTAATAGATATTTGATTTG+AGG | + | chr5_3:31037162-31037181 | Msa0807810:intron | 15.0% |
| !!! | ATTTTGTATTTTTCTTCTTT+GGG | - | chr5_3:31037374-31037393 | None:intergenic | 15.0% |
| !! | TCAAATAATAACAACTAATT+GGG | - | chr5_3:31037890-31037909 | None:intergenic | 15.0% |
| !!! | GGTTTTGATGTAAATAAAAA+GGG | - | chr5_3:31036570-31036589 | None:intergenic | 20.0% |
| !!! | TGGTTTTGATGTAAATAAAA+AGG | - | chr5_3:31036571-31036590 | None:intergenic | 20.0% |
| !! | AACCCAAAAATATTATGTAT+TGG | + | chr5_3:31036687-31036706 | Msa0807810:intron | 20.0% |
| !! | ACCCAAAAATATTATGTATT+GGG | + | chr5_3:31036688-31036707 | Msa0807810:intron | 20.0% |
| !!! | TCCCAATACATAATATTTTT+GGG | - | chr5_3:31036692-31036711 | None:intergenic | 20.0% |
| !!! | ATCCCAATACATAATATTTT+TGG | - | chr5_3:31036693-31036712 | None:intergenic | 20.0% |
| !! | AAATATTATGTATTGGGATT+AGG | + | chr5_3:31036694-31036713 | Msa0807810:intron | 20.0% |
| !! | TAATGAAATCAAGTCATTAT+TGG | + | chr5_3:31036727-31036746 | Msa0807810:intron | 20.0% |
| !!! | TTTAGCTTATGAATGATTTT+TGG | + | chr5_3:31037221-31037240 | Msa0807810:intron | 20.0% |
| !!! | CATTTTGTATTTTTCTTCTT+TGG | - | chr5_3:31037375-31037394 | None:intergenic | 20.0% |
| !! | AAAATAGCTCAAATAAAAAG+TGG | - | chr5_3:31037598-31037617 | None:intergenic | 20.0% |
| !! | CTCAAATAATAACAACTAAT+TGG | - | chr5_3:31037891-31037910 | None:intergenic | 20.0% |
| !! | TTGTTAGAATTTAGATATCT+TGG | + | chr5_3:31038775-31038794 | Msa0807810:three_prime_UTR | 20.0% |
| !!! | ATTGGTTTTATCCTTTTAAG+TGG | + | chr5_3:31036640-31036659 | Msa0807810:CDS | 25.0% |
| ! | ACAAAATTCCAAGTAAATGA+TGG | + | chr5_3:31036902-31036921 | Msa0807810:CDS | 25.0% |
| ! | CAAAATTCCAAGTAAATGAT+GGG | + | chr5_3:31036903-31036922 | Msa0807810:CDS | 25.0% |
| ! | AATATGCATTAAATACGTGA+CGG | + | chr5_3:31037274-31037293 | Msa0807810:intron | 25.0% |
| ! | ATTGTACTAACAAGCTAAAT+TGG | - | chr5_3:31037329-31037348 | None:intergenic | 25.0% |
| ! | ATTAAAAGCTTAGCTATGAT+GGG | - | chr5_3:31037544-31037563 | None:intergenic | 25.0% |
| ! | AATTAAAAGCTTAGCTATGA+TGG | - | chr5_3:31037545-31037564 | None:intergenic | 25.0% |
| ! | ATCACAAGAGAAAATATATG+AGG | - | chr5_3:31037625-31037644 | None:intergenic | 25.0% |
| ! | CAAAAAGTTTGAAAACAAGA+GGG | + | chr5_3:31037765-31037784 | Msa0807810:intron | 25.0% |
| ! | AAAAAGTTTGAAAACAAGAG+GGG | + | chr5_3:31037766-31037785 | Msa0807810:intron | 25.0% |
| ! | CTTACGCAAATTTATTAGTT+AGG | - | chr5_3:31037865-31037884 | None:intergenic | 25.0% |
| ! | ATTCGCAAATTAAATTGCAT+TGG | + | chr5_3:31037931-31037950 | Msa0807810:intron | 25.0% |
| !! | TTAAATTGCATTGGTATACT+TGG | + | chr5_3:31037940-31037959 | Msa0807810:intron | 25.0% |
| !!! | GTGTATCGATATTTTATGTA+TGG | + | chr5_3:31038224-31038243 | Msa0807810:intron | 25.0% |
| ! | NNNNNNNNNNTGCATTGCAG+TGG | + | chr5_3:31038384-31038403 | Msa0807810:intron | 25.0% |
| ! | CACATTTAGTTCAGTTGTTA+TGG | + | chr5_3:31036316-31036335 | Msa0807810:exon | 30.0% |
| CTCTTGCAAGAAAGATTAAA+GGG | - | chr5_3:31036367-31036386 | None:intergenic | 30.0% | |
| ACTCTTGCAAGAAAGATTAA+AGG | - | chr5_3:31036368-31036387 | None:intergenic | 30.0% | |
| AAAGGGAATGAAGAAAATAG+AGG | - | chr5_3:31036553-31036572 | None:intergenic | 30.0% | |
| !! | TTTATCCTTTTAAGTGGAGA+AGG | + | chr5_3:31036646-31036665 | Msa0807810:CDS | 30.0% |
| AATAGGTGTCAAGATATATC+TGG | - | chr5_3:31037126-31037145 | None:intergenic | 30.0% | |
| !! | TCAGCTTGTTGTACAAATTT+AGG | + | chr5_3:31037409-31037428 | Msa0807810:intron | 30.0% |
| TAGCTCAAATAAAAAGTGGA+GGG | - | chr5_3:31037594-31037613 | None:intergenic | 30.0% | |
| ATAGCTCAAATAAAAAGTGG+AGG | - | chr5_3:31037595-31037614 | None:intergenic | 30.0% | |
| AGATTGTATGATAGTTGACA+TGG | - | chr5_3:31037720-31037739 | None:intergenic | 30.0% | |
| !!! | CCTCTTGTTTTCAAACTTTT+TGG | - | chr5_3:31037767-31037786 | None:intergenic | 30.0% |
| CCAAAAAGTTTGAAAACAAG+AGG | + | chr5_3:31037764-31037783 | Msa0807810:intron | 30.0% | |
| ! | TAATAGGCTTCTTGAACTTT+TGG | + | chr5_3:31038408-31038427 | Msa0807810:CDS | 30.0% |
| TCCATGGTTGTAAATTCTTT+AGG | + | chr5_3:31038593-31038612 | Msa0807810:CDS | 30.0% | |
| GTTGTAAATTCTTTAGGCTT+AGG | + | chr5_3:31038599-31038618 | Msa0807810:CDS | 30.0% | |
| CCTTGAAGAATTTGATACTT+AGG | - | chr5_3:31038668-31038687 | None:intergenic | 30.0% | |
| CCTAAGTATCAAATTCTTCA+AGG | + | chr5_3:31038665-31038684 | Msa0807810:CDS | 30.0% | |
| ! | AACTTTTGTACTCAGATTCT+AGG | + | chr5_3:31038690-31038709 | Msa0807810:CDS | 30.0% |
| ATTAAAGGGAGTAGTTGTGA+GGG | - | chr5_3:31036353-31036372 | None:intergenic | 35.0% | |
| ATCTTTCTTGCAAGAGTTTG+TGG | + | chr5_3:31036371-31036390 | Msa0807810:CDS | 35.0% | |
| TAGCATTTCTTGTTCTCTTC+TGG | + | chr5_3:31036402-31036421 | Msa0807810:CDS | 35.0% | |
| AGCATTTCTTGTTCTCTTCT+GGG | + | chr5_3:31036403-31036422 | Msa0807810:CDS | 35.0% | |
| TACTACCTTCTCCACTTAAA+AGG | - | chr5_3:31036654-31036673 | None:intergenic | 35.0% | |
| ! | GAATGTTTGTGCAGCAATTT+TGG | + | chr5_3:31036784-31036803 | Msa0807810:intron | 35.0% |
| !! | CTTTAGCTTCTGGGATATTT+GGG | + | chr5_3:31036873-31036892 | Msa0807810:CDS | 35.0% |
| ATTTCTACAGCCTTCATTCA+TGG | + | chr5_3:31036936-31036955 | Msa0807810:CDS | 35.0% | |
| !! | TTGATTTGTGTATCCCTCTT+TGG | + | chr5_3:31036965-31036984 | Msa0807810:CDS | 35.0% |
| TTGGGTCAGAATTCTCTAAT+TGG | - | chr5_3:31037356-31037375 | None:intergenic | 35.0% | |
| !!! | GTGTGTAAAGCTGTTTTAAC+TGG | + | chr5_3:31037515-31037534 | Msa0807810:intron | 35.0% |
| !! | AACTTTTTGGCAGTTTTTCG+TGG | - | chr5_3:31037754-31037773 | None:intergenic | 35.0% |
| ! | ATTGCATTTTTGCTCTCTCA+TGG | - | chr5_3:31037819-31037838 | None:intergenic | 35.0% |
| TTACCATGGCATGTATTTCT+TGG | + | chr5_3:31038467-31038486 | Msa0807810:CDS | 35.0% | |
| GCCTAAAGAATTTACAACCA+TGG | - | chr5_3:31038597-31038616 | None:intergenic | 35.0% | |
| CTACTAACTACACTCTTGGA+TGG | - | chr5_3:31036258-31036277 | None:intergenic | 40.0% | |
| CTCACTACTAACTACACTCT+TGG | - | chr5_3:31036262-31036281 | None:intergenic | 40.0% | |
| GATTAAAGGGAGTAGTTGTG+AGG | - | chr5_3:31036354-31036373 | None:intergenic | 40.0% | |
| !! | GAAGGGAATTAGGAGTATTG+AGG | - | chr5_3:31036451-31036470 | None:intergenic | 40.0% |
| !! | CAGCAATTTTGGTGCATAGA+TGG | + | chr5_3:31036795-31036814 | Msa0807810:intron | 40.0% |
| TCGGTGCATTTATGTCTTCA+AGG | + | chr5_3:31036845-31036864 | Msa0807810:CDS | 40.0% | |
| CGGTGCATTTATGTCTTCAA+GGG | + | chr5_3:31036846-31036865 | Msa0807810:CDS | 40.0% | |
| GGTGCATTTATGTCTTCAAG+GGG | + | chr5_3:31036847-31036866 | Msa0807810:CDS | 40.0% | |
| !! | GCTTTAGCTTCTGGGATATT+TGG | + | chr5_3:31036872-31036891 | Msa0807810:CDS | 40.0% |
| !! | CTTCTGGGATATTTGGGATT+TGG | + | chr5_3:31036879-31036898 | Msa0807810:CDS | 40.0% |
| CCACAATCCCATCATTTACT+TGG | - | chr5_3:31036913-31036932 | None:intergenic | 40.0% | |
| ! | CCAAGTAAATGATGGGATTG+TGG | + | chr5_3:31036910-31036929 | Msa0807810:CDS | 40.0% |
| TACAGCCTTCATTCATGGAT+GGG | + | chr5_3:31036941-31036960 | Msa0807810:CDS | 40.0% | |
| TCAAACCCATCCATGAATGA+AGG | - | chr5_3:31036949-31036968 | None:intergenic | 40.0% | |
| AACAAGCTAAATTGGACAGC+AGG | - | chr5_3:31037321-31037340 | None:intergenic | 40.0% | |
| ACAAGCTGAATGCTTCTGTT+GGG | - | chr5_3:31037398-31037417 | None:intergenic | 40.0% | |
| AACAAGCTGAATGCTTCTGT+TGG | - | chr5_3:31037399-31037418 | None:intergenic | 40.0% | |
| AAATGCGAACAGTGAGGATA+AGG | + | chr5_3:31038441-31038460 | Msa0807810:CDS | 40.0% | |
| TGAGGATAAGGATCTTACCA+TGG | + | chr5_3:31038453-31038472 | Msa0807810:CDS | 40.0% | |
| TGGCCTATACACTTATGCAT+TGG | + | chr5_3:31038487-31038506 | Msa0807810:CDS | 40.0% | |
| CTGCCAATGCATAAGTGTAT+AGG | - | chr5_3:31038493-31038512 | None:intergenic | 40.0% | |
| ! | TTATGCATTGGCAGTAGCAA+CGG | + | chr5_3:31038499-31038518 | Msa0807810:CDS | 40.0% |
| CCAGAATAACAAAGCCACTA+AGG | - | chr5_3:31038634-31038653 | None:intergenic | 40.0% | |
| !! | CCTTAGTGGCTTTGTTATTC+TGG | + | chr5_3:31038631-31038650 | Msa0807810:CDS | 40.0% |
| TGGTCACAAGCGAATTAAGA+TGG | + | chr5_3:31038795-31038814 | Msa0807810:three_prime_UTR | 40.0% | |
| AGTAGTGAGTGACTAGTGAG+AGG | + | chr5_3:31036273-31036292 | Msa0807810:five_prime_UTR | 45.0% | |
| TAGTTGTGAGGGAAAGACAG+TGG | - | chr5_3:31036342-31036361 | None:intergenic | 45.0% | |
| TCCTAATTCCCTTCCTCAAC+AGG | + | chr5_3:31036457-31036476 | Msa0807810:CDS | 45.0% | |
| TCCTGTTGAGGAAGGGAATT+AGG | - | chr5_3:31036461-31036480 | None:intergenic | 45.0% | |
| GATGAGATCCTGTTGAGGAA+GGG | - | chr5_3:31036468-31036487 | None:intergenic | 45.0% | |
| AGATGAGATCCTGTTGAGGA+AGG | - | chr5_3:31036469-31036488 | None:intergenic | 45.0% | |
| GCATAGATGAGATCCTGTTG+AGG | - | chr5_3:31036473-31036492 | None:intergenic | 45.0% | |
| AAACCAATGACCATGAGCAC+AGG | - | chr5_3:31036628-31036647 | None:intergenic | 45.0% | |
| GTCAAGGGGGTTGAAGAAAT+CGG | + | chr5_3:31036826-31036845 | Msa0807810:CDS | 45.0% | |
| GCATTTATGTCTTCAAGGGG+TGG | + | chr5_3:31036850-31036869 | Msa0807810:CDS | 45.0% | |
| CTACAGCCTTCATTCATGGA+TGG | + | chr5_3:31036940-31036959 | Msa0807810:CDS | 45.0% | |
| ! | TTCTTGAACTTTTGGCACCG+AGG | + | chr5_3:31038416-31038435 | Msa0807810:CDS | 45.0% |
| TCACTGTTCGCATTTCTCCT+CGG | - | chr5_3:31038436-31038455 | None:intergenic | 45.0% | |
| AGGCCAAGAAATACATGCCA+TGG | - | chr5_3:31038473-31038492 | None:intergenic | 45.0% | |
| TTAGGTCTTGCTCTCCTTAG+TGG | + | chr5_3:31038617-31038636 | Msa0807810:CDS | 45.0% | |
| !!! | GATAATTTTAAAAAATTTTA+TGG | - | chr5_3:31037442-31037461 | None:intergenic | 5.0% |
| !!! | AGTTATTTAAATAATTTTTT+CGG | + | chr5_3:31038191-31038210 | Msa0807810:intron | 5.0% |
| CAATGACCATGAGCACAGGA+TGG | - | chr5_3:31036624-31036643 | None:intergenic | 50.0% | |
| CATCCTGTGCTCATGGTCAT+TGG | + | chr5_3:31036622-31036641 | Msa0807810:CDS | 50.0% | |
| TTGGTGCATAGATGGTTGCC+TGG | + | chr5_3:31036803-31036822 | Msa0807810:CDS | 50.0% | |
| TGGTGCATAGATGGTTGCCT+GGG | + | chr5_3:31036804-31036823 | Msa0807810:CDS | 50.0% | |
| ATAGATGGTTGCCTGGGTCA+AGG | + | chr5_3:31036810-31036829 | Msa0807810:CDS | 50.0% | |
| TAGATGGTTGCCTGGGTCAA+GGG | + | chr5_3:31036811-31036830 | Msa0807810:CDS | 50.0% | |
| !! | AAGGGGTGGCTTTAGCTTCT+GGG | + | chr5_3:31036864-31036883 | Msa0807810:CDS | 50.0% |
| !! | TGTATCCCTCTTTGGAGCTC+AGG | + | chr5_3:31036973-31036992 | Msa0807810:CDS | 50.0% |
| ACTCACCTGAGCTCCAAAGA+GGG | - | chr5_3:31036981-31037000 | None:intergenic | 50.0% | |
| TACTCACCTGAGCTCCAAAG+AGG | - | chr5_3:31036982-31037001 | None:intergenic | 50.0% | |
| GAGGAGAAATGCGAACAGTG+AGG | + | chr5_3:31038435-31038454 | Msa0807810:CDS | 50.0% | |
| CATGGACTCAGTGCTGTGTT+TGG | - | chr5_3:31038579-31038598 | None:intergenic | 50.0% | |
| ! | CAAACACAGCACTGAGTCCA+TGG | + | chr5_3:31038577-31038596 | Msa0807810:CDS | 50.0% |
| GGTTCTCCATCCTGTGCTCA+TGG | + | chr5_3:31036615-31036634 | Msa0807810:intron | 55.0% | |
| AGATGGTTGCCTGGGTCAAG+GGG | + | chr5_3:31036812-31036831 | Msa0807810:CDS | 55.0% | |
| TTCTTCAACCCCCTTGACCC+AGG | - | chr5_3:31036824-31036843 | None:intergenic | 55.0% | |
| !! | CAAGGGGTGGCTTTAGCTTC+TGG | + | chr5_3:31036863-31036882 | Msa0807810:CDS | 55.0% |
| GCAGTAGCAACGGCTGAAAC+TGG | + | chr5_3:31038509-31038528 | Msa0807810:CDS | 55.0% | |
| GATGGTTGCCTGGGTCAAGG+GGG | + | chr5_3:31036813-31036832 | Msa0807810:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 31036247 | 31038831 | 31036247 | ID=Msa0807810;Name=Msa0807810 |
| chr5_3 | mRNA | 31036247 | 31038831 | 31036247 | ID=Msa0807810-mRNA-1;Parent=Msa0807810;Name=Msa0807810-mRNA-1;_AED=0.08;_eAED=0.08;_QI=88|1|1|1|1|1|4|104|243 |
| chr5_3 | exon | 31036247 | 31036493 | 31036247 | ID=Msa0807810-mRNA-1:exon:10306;Parent=Msa0807810-mRNA-1 |
| chr5_3 | exon | 31036616 | 31036667 | 31036616 | ID=Msa0807810-mRNA-1:exon:10307;Parent=Msa0807810-mRNA-1 |
| chr5_3 | exon | 31036798 | 31036994 | 31036798 | ID=Msa0807810-mRNA-1:exon:10308;Parent=Msa0807810-mRNA-1 |
| chr5_3 | exon | 31038404 | 31038831 | 31038404 | ID=Msa0807810-mRNA-1:exon:10309;Parent=Msa0807810-mRNA-1 |
| chr5_3 | five_prime_UTR | 31036247 | 31036334 | 31036247 | ID=Msa0807810-mRNA-1:five_prime_utr;Parent=Msa0807810-mRNA-1 |
| chr5_3 | CDS | 31036335 | 31036493 | 31036335 | ID=Msa0807810-mRNA-1:cds;Parent=Msa0807810-mRNA-1 |
| chr5_3 | CDS | 31036616 | 31036667 | 31036616 | ID=Msa0807810-mRNA-1:cds;Parent=Msa0807810-mRNA-1 |
| chr5_3 | CDS | 31036798 | 31036994 | 31036798 | ID=Msa0807810-mRNA-1:cds;Parent=Msa0807810-mRNA-1 |
| chr5_3 | CDS | 31038404 | 31038727 | 31038404 | ID=Msa0807810-mRNA-1:cds;Parent=Msa0807810-mRNA-1 |
| chr5_3 | three_prime_UTR | 31038728 | 31038831 | 31038728 | ID=Msa0807810-mRNA-1:three_prime_utr;Parent=Msa0807810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
