AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0710800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0710800 MtrunA17_Chr5g0422371 97.826 184 4 0 1 184 61 244 1.45e-130 365
Msa0710800 MtrunA17_Chr6g0456901 49.112 169 85 1 1 168 55 223 6.55e-53 168
Msa0710800 MtrunA17_Chr1g0203371 43.636 165 91 2 1 164 54 217 1.13e-39 134
Msa0710800 MtrunA17_Chr1g0161921 42.515 167 90 2 1 166 56 217 5.42e-39 132
Msa0710800 MtrunA17_Chr1g0161941 35.185 162 100 2 1 161 50 207 5.53e-29 106
Msa0710800 MtrunA17_Chr8g0375991 37.736 159 92 4 1 158 50 202 2.67e-25 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0710800 AT1G26100.1 70.370 189 51 2 1 184 48 236 4.70e-85 251
Msa0710800 AT5G38630.1 49.714 175 82 3 1 170 55 228 2.07e-54 172
Msa0710800 AT4G25570.1 43.558 163 90 2 1 162 54 215 5.08e-39 133
Msa0710800 AT4G25570.2 43.558 163 90 2 1 162 95 256 1.81e-38 133
Msa0710800 AT1G14730.1 32.184 174 105 3 1 173 61 222 1.27e-20 85.5

Find 70 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTAGCTTCTGGGATATT+TGG 0.112597 5_1:+2561281 Msa0710800:CDS
TAGCATTTCTTGTTCTCTTC+TGG 0.118815 5_1:+2560841 Msa0710800:five_prime_UTR
CCTTAGTGGCTTTGTTATTC+TGG 0.121532 5_1:+2563789 Msa0710800:CDS
CAAGGGGTGGCTTTAGCTTC+TGG 0.175443 5_1:+2561272 Msa0710800:CDS
GAATGTTTGTGCAGCAATTT+TGG 0.224729 5_1:+2561193 Msa0710800:intron
TTGATTTGTGTATCACTCTT+TGG 0.246496 5_1:+2561374 Msa0710800:CDS
TAATAGGCTTCTTGAACTTT+TGG 0.266466 5_1:+2563566 Msa0710800:CDS
CTTTAGCTTCTGGGATATTT+GGG 0.267158 5_1:+2561282 Msa0710800:CDS
TTACCATGGCATGTATTTCT+TGG 0.277630 5_1:+2563625 Msa0710800:CDS
CTTCTGGGATATTTGGGATT+TGG 0.279862 5_1:+2561288 Msa0710800:CDS
TCCTGTTGAGGAAGAGAATT+AGG 0.298620 5_1:-2560897 None:intergenic
ATTTCTACAGCCTTCATTCA+TGG 0.299138 5_1:+2561345 Msa0710800:CDS
AAGGGGTGGCTTTAGCTTCT+GGG 0.303519 5_1:+2561273 Msa0710800:CDS
AGCATTTCTTGTTCTCTTCT+GGG 0.319777 5_1:+2560842 Msa0710800:five_prime_UTR
TACTACCTTCTCCACTTAAA+AGG 0.321243 5_1:-2561060 None:intergenic
CCACAATCCCATCATTTACT+TGG 0.326307 5_1:-2561319 None:intergenic
TCCATGGTTGTAAATTCTTT+AGG 0.339651 5_1:+2563751 Msa0710800:CDS
CATCCTGTGCTCATGGTCAT+TGG 0.339718 5_1:+2561031 Msa0710800:exon
ACATTTAGTTACAGTTGTTA+TGG 0.357021 5_1:+2560759 Msa0710800:five_prime_UTR
GCAGTAGCAACGGCTGAAAC+TGG 0.360280 5_1:+2563667 Msa0710800:CDS
TTAGGTCTTGCTCTCCTTAG+TGG 0.363802 5_1:+2563775 Msa0710800:CDS
TTGTTAGAATTTAGATATCT+TGG 0.364277 5_1:+2563933 Msa0710800:three_prime_UTR
GTTGTAAATTCTTTAGGCTT+AGG 0.366014 5_1:+2563757 Msa0710800:CDS
ATTGTATTGCAGTGGCTAAT+AGG 0.375849 5_1:+2563550 Msa0710800:intron
CCTAAGTATCAAATTCTTCA+AGG 0.384117 5_1:+2563823 Msa0710800:CDS
CCTTGAAGAATTTGATACTT+AGG 0.393626 5_1:-2563823 None:intergenic
TCCTAATTCTCTTCCTCAAC+AGG 0.404001 5_1:+2560896 Msa0710800:five_prime_UTR
TGTATCACTCTTTGGAGCTC+AGG 0.406685 5_1:+2561382 Msa0710800:CDS
TAGATGGTTGCCTGGGTCAA+GGG 0.416984 5_1:+2561220 Msa0710800:CDS
CTGCCAATGCATAAGTGTAT+AGG 0.426996 5_1:-2563648 None:intergenic
AAATGCGAACAGTGAGGATA+AGG 0.435065 5_1:+2563599 Msa0710800:CDS
ACAAAATTCCAAGTAAATGA+TGG 0.437217 5_1:+2561311 Msa0710800:CDS
TACAGCCTTCATTCATGGAT+GGG 0.445813 5_1:+2561350 Msa0710800:CDS
CATGGACTCAGTGCTGTGTT+TGG 0.448440 5_1:-2563734 None:intergenic
ATAGATGGTTGCCTGGGTCA+AGG 0.449560 5_1:+2561219 Msa0710800:CDS
ACTACTAACTACTACACTCT+TGG 0.453368 5_1:-2560694 None:intergenic
GAAGAGAATTAGGAGTATTG+AGG 0.459271 5_1:-2560887 None:intergenic
TCGGTGCATTTATGTCTTCA+AGG 0.466772 5_1:+2561254 Msa0710800:CDS
TTGGTGCATAGATGGTTGCC+TGG 0.471390 5_1:+2561212 Msa0710800:CDS
GGTTCTCCATCCTGTGCTCA+TGG 0.477323 5_1:+2561024 Msa0710800:intron
CTACAGCCTTCATTCATGGA+TGG 0.480089 5_1:+2561349 Msa0710800:CDS
AGATGGTTGCCTGGGTCAAG+GGG 0.483244 5_1:+2561221 Msa0710800:CDS
CCAGAATAACAAAGCCACTA+AGG 0.497367 5_1:-2563789 None:intergenic
CGGTGCATTTATGTCTTCAA+GGG 0.507370 5_1:+2561255 Msa0710800:CDS
TCACTGTTCGCATTTCTCCT+CGG 0.512543 5_1:-2563591 None:intergenic
CAAACACAGCACTGAGTCCA+TGG 0.530906 5_1:+2563735 Msa0710800:CDS
CAAAATTCCAAGTAAATGAT+GGG 0.535853 5_1:+2561312 Msa0710800:CDS
CCAAGTAAATGATGGGATTG+TGG 0.538655 5_1:+2561319 Msa0710800:CDS
TCAAACCCATCCATGAATGA+AGG 0.539092 5_1:-2561355 None:intergenic
AACTCTCGCAAGAAAAGCAA+AGG 0.541441 5_1:-2560805 None:intergenic
GCATTTATGTCTTCAAGGGG+TGG 0.549961 5_1:+2561259 Msa0710800:CDS
TGGTCACAAGCGAATTAAGA+TGG 0.551793 5_1:+2563953 Msa0710800:three_prime_UTR
TGGCCTATACACTTATGCAT+TGG 0.552843 5_1:+2563645 Msa0710800:CDS
AAAAGCAAAGGGAGTAGTGA+GGG 0.558333 5_1:-2560793 None:intergenic
AGGCCAAGAAATACATGCCA+TGG 0.575316 5_1:-2563628 None:intergenic
TTATGCATTGGCAGTAGCAA+CGG 0.579204 5_1:+2563657 Msa0710800:CDS
TGGTGCATAGATGGTTGCCT+GGG 0.586545 5_1:+2561213 Msa0710800:CDS
GCCTAAAGAATTTACAACCA+TGG 0.590393 5_1:-2563752 None:intergenic
CTAACTACTACACTCTTGGA+TGG 0.593357 5_1:-2560690 None:intergenic
AATCCAATGACCATGAGCAC+AGG 0.602677 5_1:-2561034 None:intergenic
CAATGACCATGAGCACAGGA+TGG 0.614301 5_1:-2561030 None:intergenic
ACTCTCGCAAGAAAAGCAAA+GGG 0.615668 5_1:-2560804 None:intergenic
GATGGTTGCCTGGGTCAAGG+GGG 0.624454 5_1:+2561222 Msa0710800:CDS
GAAAAGCAAAGGGAGTAGTG+AGG 0.632926 5_1:-2560794 None:intergenic
GTGAGTGAGTGACTAGTGAG+AGG 0.642048 5_1:+2560715 Msa0710800:five_prime_UTR
GGTGCATTTATGTCTTCAAG+GGG 0.646132 5_1:+2561256 Msa0710800:CDS
GCATAGATGAGATCCTGTTG+AGG 0.669004 5_1:-2560909 None:intergenic
GAGTAGTGAGGGAAAGACAG+TGG 0.669481 5_1:-2560782 None:intergenic
TGAGGATAAGGATCTTACCA+TGG 0.703662 5_1:+2563611 Msa0710800:CDS
GAGGAGAAATGCGAACAGTG+AGG 0.732322 5_1:+2563593 Msa0710800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTTAAATAAATATTA+AGG + chr5_1:2561593-2561612 Msa0710800:intron 0.0%
!! TTGATGTAATTAAATAAAAA+GGG - chr5_1:2560965-2560984 None:intergenic 10.0%
!! TTTGATGTAATTAAATAAAA+AGG - chr5_1:2560966-2560985 None:intergenic 10.0%
!!! TTTAATTTTAATTTAATTGC+AGG + chr5_1:2561003-2561022 Msa0710800:intron 10.0%
!!! AAAAAATTCTGAAATTTTTT+TGG + chr5_1:2562176-2562195 Msa0710800:intron 10.0%
!!! AAATTTTAAATGAAATTGAA+AGG - chr5_1:2562678-2562697 None:intergenic 10.0%
!! TTAACTATTAATTTAAGAAT+TGG + chr5_1:2563292-2563311 Msa0710800:intron 10.0%
!!! TTCTAAGATTAATTTTTACT+TGG + chr5_1:2561450-2561469 Msa0710800:intron 15.0%
!!! TCTAAGATTAATTTTTACTT+GGG + chr5_1:2561451-2561470 Msa0710800:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr5_1:2561978-2561997 None:intergenic 15.0%
!!! TGAAGATTGAAAATTTTATA+AGG + chr5_1:2562292-2562311 Msa0710800:intron 15.0%
!! AAAAAGTTGACATATTTATA+GGG + chr5_1:2562352-2562371 Msa0710800:intron 15.0%
!! AACCCAAAAATATTATGTAT+TGG + chr5_1:2561096-2561115 Msa0710800:intron 20.0%
!! ACCCAAAAATATTATGTATT+GGG + chr5_1:2561097-2561116 Msa0710800:intron 20.0%
!!! TCCCAATACATAATATTTTT+GGG - chr5_1:2561101-2561120 None:intergenic 20.0%
!!! ATCCCAATACATAATATTTT+TGG - chr5_1:2561102-2561121 None:intergenic 20.0%
!! AAATATTATGTATTGGGATT+AGG + chr5_1:2561103-2561122 Msa0710800:intron 20.0%
!! TAATGAAATCAAGTCATTAT+TGG + chr5_1:2561136-2561155 Msa0710800:intron 20.0%
!!! AATTTTATTTCCTGATGAAT+AGG - chr5_1:2561580-2561599 None:intergenic 20.0%
!!! TTAGCTTATGAAATGATTTT+TGG + chr5_1:2561652-2561671 Msa0710800:intron 20.0%
!!! ATTTTGTATTTTCCTTCTTT+GGG - chr5_1:2561813-2561832 None:intergenic 20.0%
!!! TAAAAAGAACATGAAAGTAT+AGG - chr5_1:2561875-2561894 None:intergenic 20.0%
!!! TATACTTTCATGTTCTTTTT+AGG + chr5_1:2561874-2561893 Msa0710800:intron 20.0%
!!! ATACTTTCATGTTCTTTTTA+GGG + chr5_1:2561875-2561894 Msa0710800:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr5_1:2561918-2561937 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr5_1:2561979-2561998 None:intergenic 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr5_1:2562260-2562279 Msa0710800:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG + chr5_1:2562261-2562280 Msa0710800:intron 20.0%
!!! AAATTTTCAATCTTCACTTT+TGG - chr5_1:2562288-2562307 None:intergenic 20.0%
!! CAAAAAGTTGACATATTTAT+AGG + chr5_1:2562351-2562370 Msa0710800:intron 20.0%
!!! AGAATGGTTAAATATGTTTT+TGG - chr5_1:2562379-2562398 None:intergenic 20.0%
!! AATCGTGAAATTAAAAAGAA+TGG - chr5_1:2562395-2562414 None:intergenic 20.0%
!! AATTCTATTATTATCCCATA+TGG + chr5_1:2562502-2562521 Msa0710800:intron 20.0%
!! AATATTTATTCGATCCATAT+GGG - chr5_1:2562519-2562538 None:intergenic 20.0%
!!! TTGTCAAAAGTTTTTCAATT+AGG + chr5_1:2562557-2562576 Msa0710800:intron 20.0%
!! CAAAAAATTTGAACAAAAGA+GGG + chr5_1:2562786-2562805 Msa0710800:intron 20.0%
!! AAAAAATTTGAACAAAAGAG+GGG + chr5_1:2562787-2562806 Msa0710800:intron 20.0%
!! CTTATGCAAATTTATTAGTT+AGG - chr5_1:2562889-2562908 None:intergenic 20.0%
!! CTCAAATAATGATAACTAAT+TGG - chr5_1:2562915-2562934 None:intergenic 20.0%
!!! ATTCACAAATTAAGCTATTT+TGG + chr5_1:2562955-2562974 Msa0710800:intron 20.0%
!!! TTAGTGTATACATAATCTTT+TGG + chr5_1:2563448-2563467 Msa0710800:intron 20.0%
!!! TAGTGTATACATAATCTTTT+GGG + chr5_1:2563449-2563468 Msa0710800:intron 20.0%
!!! GTGTATAGATATTTTATGTA+TGG + chr5_1:2563482-2563501 Msa0710800:intron 20.0%
!! TTGTTAGAATTTAGATATCT+TGG + chr5_1:2563933-2563952 Msa0710800:three_prime_UTR 20.0%
! ACATTTAGTTACAGTTGTTA+TGG + chr5_1:2560759-2560778 Msa0710800:five_prime_UTR 25.0%
!! ATTGGATTTATCCTTTTAAG+TGG + chr5_1:2561049-2561068 Msa0710800:CDS 25.0%
! ACAAAATTCCAAGTAAATGA+TGG + chr5_1:2561311-2561330 Msa0710800:CDS 25.0%
! CAAAATTCCAAGTAAATGAT+GGG + chr5_1:2561312-2561331 Msa0710800:CDS 25.0%
! AATATGCACTAAATATGTGA+TGG + chr5_1:2561706-2561725 Msa0710800:intron 25.0%
! ATTGTACTAACTAGCTAAAT+TGG - chr5_1:2561768-2561787 None:intergenic 25.0%
!! CATTTTGTATTTTCCTTCTT+TGG - chr5_1:2561814-2561833 None:intergenic 25.0%
!! TCGTCTTGTTGTAAAAATTT+AGG + chr5_1:2561848-2561867 Msa0710800:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr5_1:2561919-2561938 None:intergenic 25.0%
! TTATAAGGACTAAAAGTTGA+AGG + chr5_1:2562307-2562326 Msa0710800:intron 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr5_1:2562320-2562339 Msa0710800:intron 25.0%
! CAATATTTATTCGATCCATA+TGG - chr5_1:2562520-2562539 None:intergenic 25.0%
! ATCATAAGAGAAAATATACG+AGG - chr5_1:2562646-2562665 None:intergenic 25.0%
!! CCTCTTTTGTTCAAATTTTT+TGG - chr5_1:2562788-2562807 None:intergenic 25.0%
! CCAAAAAATTTGAACAAAAG+AGG + chr5_1:2562785-2562804 Msa0710800:intron 25.0%
!!! TCAAAAAGTATTTTCCATGT+AGG + chr5_1:2562824-2562843 Msa0710800:intron 25.0%
!!! ATTACATTTTTTCTCCTACA+TGG - chr5_1:2562841-2562860 None:intergenic 25.0%
! ATGCAAATTTATTAGTTAGG+AGG - chr5_1:2562886-2562905 None:intergenic 25.0%
!!! CAAATTAAGCTATTTTGGTA+CGG + chr5_1:2562960-2562979 Msa0710800:intron 25.0%
! AACTCTCTATTTCATACAAA+TGG - chr5_1:2563012-2563031 None:intergenic 25.0%
! GATAATGCATAATATATGCA+AGG + chr5_1:2563339-2563358 Msa0710800:intron 25.0%
!! AGTGTATACATAATCTTTTG+GGG + chr5_1:2563450-2563469 Msa0710800:intron 25.0%
AAAGGGAATGAAGAAAATAG+AGG - chr5_1:2560948-2560967 None:intergenic 30.0%
!! TTTATCCTTTTAAGTGGAGA+AGG + chr5_1:2561055-2561074 Msa0710800:CDS 30.0%
!! TTGATTTGTGTATCACTCTT+TGG + chr5_1:2561374-2561393 Msa0710800:CDS 30.0%
! AGACTCTTTTGTATCAGTTT+TGG + chr5_1:2561625-2561644 Msa0710800:intron 30.0%
AACTAGCTAAATTGGAAAGT+AGG - chr5_1:2561760-2561779 None:intergenic 30.0%
!! AGTCGAAGGAATATTTTAGA+GGG - chr5_1:2561949-2561968 None:intergenic 30.0%
!! AAGTCGAAGGAATATTTTAG+AGG - chr5_1:2561950-2561969 None:intergenic 30.0%
AGATTCTATGAGAGTTAACT+TGG - chr5_1:2562741-2562760 None:intergenic 30.0%
!!! AATTTTTTGGCAGTTTTTCG+TGG - chr5_1:2562775-2562794 None:intergenic 30.0%
ATGCATAATATATGCAAGGT+TGG + chr5_1:2563343-2563362 Msa0710800:intron 30.0%
TTCAACATATTGTATTGCAG+TGG + chr5_1:2563542-2563561 Msa0710800:intron 30.0%
! TAATAGGCTTCTTGAACTTT+TGG + chr5_1:2563566-2563585 Msa0710800:CDS 30.0%
TCCATGGTTGTAAATTCTTT+AGG + chr5_1:2563751-2563770 Msa0710800:CDS 30.0%
GTTGTAAATTCTTTAGGCTT+AGG + chr5_1:2563757-2563776 Msa0710800:CDS 30.0%
CCTTGAAGAATTTGATACTT+AGG - chr5_1:2563826-2563845 None:intergenic 30.0%
CCTAAGTATCAAATTCTTCA+AGG + chr5_1:2563823-2563842 Msa0710800:CDS 30.0%
! AACTTTTGTACTCAGATTCT+AGG + chr5_1:2563848-2563867 Msa0710800:CDS 30.0%
ACTACTAACTACTACACTCT+TGG - chr5_1:2560697-2560716 None:intergenic 35.0%
TAGCATTTCTTGTTCTCTTC+TGG + chr5_1:2560841-2560860 Msa0710800:five_prime_UTR 35.0%
AGCATTTCTTGTTCTCTTCT+GGG + chr5_1:2560842-2560861 Msa0710800:five_prime_UTR 35.0%
!! GAAGAGAATTAGGAGTATTG+AGG - chr5_1:2560890-2560909 None:intergenic 35.0%
TACTACCTTCTCCACTTAAA+AGG - chr5_1:2561063-2561082 None:intergenic 35.0%
! GAATGTTTGTGCAGCAATTT+TGG + chr5_1:2561193-2561212 Msa0710800:intron 35.0%
!! CTTTAGCTTCTGGGATATTT+GGG + chr5_1:2561282-2561301 Msa0710800:CDS 35.0%
ATTTCTACAGCCTTCATTCA+TGG + chr5_1:2561345-2561364 Msa0710800:CDS 35.0%
TATCTTGACACCTATTCATC+AGG + chr5_1:2561567-2561586 Msa0710800:intron 35.0%
TTGGGTCAGAATTCTCTAAT+TGG - chr5_1:2561795-2561814 None:intergenic 35.0%
TTATAGGGACTAAAAGTCGA+AGG - chr5_1:2561963-2561982 None:intergenic 35.0%
AACAAAAGAGGGGCAAAAAT+AGG + chr5_1:2562797-2562816 Msa0710800:intron 35.0%
TTTGAGTATGCGAGATTATG+CGG + chr5_1:2562929-2562948 Msa0710800:intron 35.0%
!!! TTAAGCTATTTTGGTACGGT+TGG + chr5_1:2562964-2562983 Msa0710800:intron 35.0%
TGGTTAGAGTTTAACTCAGT+TGG + chr5_1:2563312-2563331 Msa0710800:intron 35.0%
TTAGAGTTTAACTCAGTTGG+TGG + chr5_1:2563315-2563334 Msa0710800:intron 35.0%
TAGAGTTTAACTCAGTTGGT+GGG + chr5_1:2563316-2563335 Msa0710800:intron 35.0%
AATCCAGACACTACAAAGAT+TGG + chr5_1:2563372-2563391 Msa0710800:intron 35.0%
TAACCAATCTTTGTAGTGTC+TGG - chr5_1:2563378-2563397 None:intergenic 35.0%
ATTGTATTGCAGTGGCTAAT+AGG + chr5_1:2563550-2563569 Msa0710800:intron 35.0%
TTACCATGGCATGTATTTCT+TGG + chr5_1:2563625-2563644 Msa0710800:CDS 35.0%
GCCTAAAGAATTTACAACCA+TGG - chr5_1:2563755-2563774 None:intergenic 35.0%
CTAACTACTACACTCTTGGA+TGG - chr5_1:2560693-2560712 None:intergenic 40.0%
AAAAGCAAAGGGAGTAGTGA+GGG - chr5_1:2560796-2560815 None:intergenic 40.0%
ACTCTCGCAAGAAAAGCAAA+GGG - chr5_1:2560807-2560826 None:intergenic 40.0%
AACTCTCGCAAGAAAAGCAA+AGG - chr5_1:2560808-2560827 None:intergenic 40.0%
TCCTAATTCTCTTCCTCAAC+AGG + chr5_1:2560896-2560915 Msa0710800:five_prime_UTR 40.0%
TCCTGTTGAGGAAGAGAATT+AGG - chr5_1:2560900-2560919 None:intergenic 40.0%
!! CAGCAATTTTGGTGCATAGA+TGG + chr5_1:2561204-2561223 Msa0710800:intron 40.0%
TCGGTGCATTTATGTCTTCA+AGG + chr5_1:2561254-2561273 Msa0710800:CDS 40.0%
CGGTGCATTTATGTCTTCAA+GGG + chr5_1:2561255-2561274 Msa0710800:CDS 40.0%
GGTGCATTTATGTCTTCAAG+GGG + chr5_1:2561256-2561275 Msa0710800:CDS 40.0%
!! GCTTTAGCTTCTGGGATATT+TGG + chr5_1:2561281-2561300 Msa0710800:CDS 40.0%
!! CTTCTGGGATATTTGGGATT+TGG + chr5_1:2561288-2561307 Msa0710800:CDS 40.0%
CCACAATCCCATCATTTACT+TGG - chr5_1:2561322-2561341 None:intergenic 40.0%
! CCAAGTAAATGATGGGATTG+TGG + chr5_1:2561319-2561338 Msa0710800:CDS 40.0%
TACAGCCTTCATTCATGGAT+GGG + chr5_1:2561350-2561369 Msa0710800:CDS 40.0%
TCAAACCCATCCATGAATGA+AGG - chr5_1:2561358-2561377 None:intergenic 40.0%
!! TGAATGATTGATGACGACCT+CGG + chr5_1:2561733-2561752 Msa0710800:intron 40.0%
TAAATTGGAAAGTAGGTCCG+AGG - chr5_1:2561753-2561772 None:intergenic 40.0%
AGAGAATTCTGACCCAAAGA+AGG + chr5_1:2561798-2561817 Msa0710800:intron 40.0%
ACAAGACGAATGCTTCTGTT+GGG - chr5_1:2561837-2561856 None:intergenic 40.0%
AACAAGACGAATGCTTCTGT+TGG - chr5_1:2561838-2561857 None:intergenic 40.0%
! AGAGTTTAACTCAGTTGGTG+GGG + chr5_1:2563317-2563336 Msa0710800:intron 40.0%
AAATGCGAACAGTGAGGATA+AGG + chr5_1:2563599-2563618 Msa0710800:CDS 40.0%
TGAGGATAAGGATCTTACCA+TGG + chr5_1:2563611-2563630 Msa0710800:CDS 40.0%
TGGCCTATACACTTATGCAT+TGG + chr5_1:2563645-2563664 Msa0710800:CDS 40.0%
CTGCCAATGCATAAGTGTAT+AGG - chr5_1:2563651-2563670 None:intergenic 40.0%
! TTATGCATTGGCAGTAGCAA+CGG + chr5_1:2563657-2563676 Msa0710800:CDS 40.0%
CCAGAATAACAAAGCCACTA+AGG - chr5_1:2563792-2563811 None:intergenic 40.0%
!! CCTTAGTGGCTTTGTTATTC+TGG + chr5_1:2563789-2563808 Msa0710800:CDS 40.0%
TGGTCACAAGCGAATTAAGA+TGG + chr5_1:2563953-2563972 Msa0710800:three_prime_UTR 40.0%
GAAAAGCAAAGGGAGTAGTG+AGG - chr5_1:2560797-2560816 None:intergenic 45.0%
! GCTTTTCTTGCGAGAGTTTG+TGG + chr5_1:2560810-2560829 Msa0710800:five_prime_UTR 45.0%
GCATAGATGAGATCCTGTTG+AGG - chr5_1:2560912-2560931 None:intergenic 45.0%
AATCCAATGACCATGAGCAC+AGG - chr5_1:2561037-2561056 None:intergenic 45.0%
GTCAAGGGGGTTGAAGAAAT+CGG + chr5_1:2561235-2561254 Msa0710800:CDS 45.0%
GCATTTATGTCTTCAAGGGG+TGG + chr5_1:2561259-2561278 Msa0710800:CDS 45.0%
CTACAGCCTTCATTCATGGA+TGG + chr5_1:2561349-2561368 Msa0710800:CDS 45.0%
!! TGTATCACTCTTTGGAGCTC+AGG + chr5_1:2561382-2561401 Msa0710800:CDS 45.0%
! TTCTTGAACTTTTGGCACCG+AGG + chr5_1:2563574-2563593 Msa0710800:CDS 45.0%
TCACTGTTCGCATTTCTCCT+CGG - chr5_1:2563594-2563613 None:intergenic 45.0%
AGGCCAAGAAATACATGCCA+TGG - chr5_1:2563631-2563650 None:intergenic 45.0%
TTAGGTCTTGCTCTCCTTAG+TGG + chr5_1:2563775-2563794 Msa0710800:CDS 45.0%
!! CAAAAATTAAATTAAAAATA+GGG - chr5_1:2562009-2562028 None:intergenic 5.0%
!! ACAAAAATTAAATTAAAAAT+AGG - chr5_1:2562010-2562029 None:intergenic 5.0%
!!! TAAAAATTCTAATTTTTTTT+AGG - chr5_1:2562082-2562101 None:intergenic 5.0%
!!! TATAATATTTTGAATTTTTT+TGG + chr5_1:2562208-2562227 Msa0710800:intron 5.0%
GTGAGTGAGTGACTAGTGAG+AGG + chr5_1:2560715-2560734 Msa0710800:five_prime_UTR 50.0%
GAGTAGTGAGGGAAAGACAG+TGG - chr5_1:2560785-2560804 None:intergenic 50.0%
CAATGACCATGAGCACAGGA+TGG - chr5_1:2561033-2561052 None:intergenic 50.0%
CATCCTGTGCTCATGGTCAT+TGG + chr5_1:2561031-2561050 Msa0710800:exon 50.0%
TTGGTGCATAGATGGTTGCC+TGG + chr5_1:2561212-2561231 Msa0710800:CDS 50.0%
TGGTGCATAGATGGTTGCCT+GGG + chr5_1:2561213-2561232 Msa0710800:CDS 50.0%
ATAGATGGTTGCCTGGGTCA+AGG + chr5_1:2561219-2561238 Msa0710800:CDS 50.0%
TAGATGGTTGCCTGGGTCAA+GGG + chr5_1:2561220-2561239 Msa0710800:CDS 50.0%
!! AAGGGGTGGCTTTAGCTTCT+GGG + chr5_1:2561273-2561292 Msa0710800:CDS 50.0%
GAGGAGAAATGCGAACAGTG+AGG + chr5_1:2563593-2563612 Msa0710800:CDS 50.0%
CATGGACTCAGTGCTGTGTT+TGG - chr5_1:2563737-2563756 None:intergenic 50.0%
! CAAACACAGCACTGAGTCCA+TGG + chr5_1:2563735-2563754 Msa0710800:CDS 50.0%
GGTTCTCCATCCTGTGCTCA+TGG + chr5_1:2561024-2561043 Msa0710800:intron 55.0%
AGATGGTTGCCTGGGTCAAG+GGG + chr5_1:2561221-2561240 Msa0710800:CDS 55.0%
TTCTTCAACCCCCTTGACCC+AGG - chr5_1:2561233-2561252 None:intergenic 55.0%
!! CAAGGGGTGGCTTTAGCTTC+TGG + chr5_1:2561272-2561291 Msa0710800:CDS 55.0%
GCAGTAGCAACGGCTGAAAC+TGG + chr5_1:2563667-2563686 Msa0710800:CDS 55.0%
GATGGTTGCCTGGGTCAAGG+GGG + chr5_1:2561222-2561241 Msa0710800:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 2560682 2563989 2560682 ID=Msa0710800;Name=Msa0710800
chr5_1 mRNA 2560682 2563989 2560682 ID=Msa0710800-mRNA-1;Parent=Msa0710800;Name=Msa0710800-mRNA-1;_AED=0.11;_eAED=0.11;_QI=269|1|1|1|1|1|4|104|184
chr5_1 exon 2560682 2560932 2560682 ID=Msa0710800-mRNA-1:exon:799;Parent=Msa0710800-mRNA-1
chr5_1 exon 2561025 2561076 2561025 ID=Msa0710800-mRNA-1:exon:800;Parent=Msa0710800-mRNA-1
chr5_1 exon 2561207 2561403 2561207 ID=Msa0710800-mRNA-1:exon:801;Parent=Msa0710800-mRNA-1
chr5_1 exon 2563562 2563989 2563562 ID=Msa0710800-mRNA-1:exon:802;Parent=Msa0710800-mRNA-1
chr5_1 five_prime_UTR 2560682 2560932 2560682 ID=Msa0710800-mRNA-1:five_prime_utr;Parent=Msa0710800-mRNA-1
chr5_1 five_prime_UTR 2561025 2561042 2561025 ID=Msa0710800-mRNA-1:five_prime_utr;Parent=Msa0710800-mRNA-1
chr5_1 CDS 2561043 2561076 2561043 ID=Msa0710800-mRNA-1:cds;Parent=Msa0710800-mRNA-1
chr5_1 CDS 2561207 2561403 2561207 ID=Msa0710800-mRNA-1:cds;Parent=Msa0710800-mRNA-1
chr5_1 CDS 2563562 2563885 2563562 ID=Msa0710800-mRNA-1:cds;Parent=Msa0710800-mRNA-1
chr5_1 three_prime_UTR 2563886 2563989 2563886 ID=Msa0710800-mRNA-1:three_prime_utr;Parent=Msa0710800-mRNA-1
Gene Sequence

>Msa0710800

ATGGTCATTGGATTTATCCTTTTAAGTGGAGAAGCAATTTTGGTGCATAGATGGTTGCCTGGGTCAAGGGGGTTGAAGAAATCGGTGCATTTATGTCTTCAAGGGGTGGCTTTAGCTTCTGGGATATTTGGGATTTGGACAAAATTCCAAGTAAATGATGGGATTGTGGCTAATTTCTACAGCCTTCATTCATGGATGGGTTTGATTTGTGTATCACTCTTTGGAGCTCAGTGGCTAATAGGCTTCTTGAACTTTTGGCACCGAGGAGAAATGCGAACAGTGAGGATAAGGATCTTACCATGGCATGTATTTCTTGGCCTATACACTTATGCATTGGCAGTAGCAACGGCTGAAACTGGATTATTAGAGAAGTTGACATTCTTGCAAACACAGAGAAATGTATCCAAACACAGCACTGAGTCCATGGTTGTAAATTCTTTAGGCTTAGGTCTTGCTCTCCTTAGTGGCTTTGTTATTCTGGCTGCTGTTTCACCTAAGTATCAAATTCTTCAAGGCAAACTTTTGTACTCAGATTCTAGGTGTTTGTCATCTTAA

Protein sequence

>Msa0710800

MVIGFILLSGEAILVHRWLPGSRGLKKSVHLCLQGVALASGIFGIWTKFQVNDGIVANFYSLHSWMGLICVSLFGAQWLIGFLNFWHRGEMRTVRIRILPWHVFLGLYTYALAVATAETGLLEKLTFLQTQRNVSKHSTESMVVNSLGLGLALLSGFVILAAVSPKYQILQGKLLYSDSRCLSS*