AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0770720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0770720 MtrunA17_Chr5g0423771 90.338 207 4 1 1 207 1 191 5.21e-133 371
Msa0770720 MtrunA17_Chr4g0047771 41.667 192 92 2 6 194 2 176 2.46e-48 156
Msa0770720 MtrunA17_Chr2g0318011 42.623 183 89 1 6 188 2 168 1.78e-42 141
Msa0770720 MtrunA17_Chr1g0209281 38.000 200 105 3 7 206 4 184 3.06e-40 135
Msa0770720 MtrunA17_Chr1g0209321 25.269 186 113 5 19 201 16 178 1.10e-12 63.9
Msa0770720 MtrunA17_Chr1g0209301 32.941 85 57 0 122 206 18 102 6.44e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0770720 AT1G13380.1 66.184 207 51 2 1 207 1 188 7.29e-85 249
Msa0770720 AT4G27435.1 43.011 186 90 1 6 191 2 171 6.57e-49 157
Msa0770720 AT3G15480.1 40.884 181 90 2 6 185 2 166 6.58e-45 147
Msa0770720 AT1G61065.1 41.436 181 88 2 20 199 16 179 5.81e-44 145
Msa0770720 AT1G52910.1 39.779 181 92 2 6 185 2 166 5.49e-40 135
Msa0770720 AT1G68220.1 37.000 200 102 5 10 204 5 185 4.12e-35 123
Msa0770720 AT5G17210.1 30.723 166 102 5 29 183 2 165 4.74e-11 60.1

Find 58 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCCTATTTCTTCTTTC+AGG 0.118110 5_2:+42109735 Msa0770720:CDS
CGCCTAAATTTCGATATTAA+TGG 0.129871 5_2:-42110986 None:intergenic
ATAAATAATTCCCCGGTATT+TGG 0.197206 5_2:-42110613 None:intergenic
TTCAGGTGAATCACTGCTTA+TGG 0.206084 5_2:+42109752 Msa0770720:CDS
TTCCATTAATATCGAAATTT+AGG 0.232176 5_2:+42110984 Msa0770720:three_prime_UTR
TCAGATGTTGCAACTGGTTA+TGG 0.298329 5_2:+42109705 Msa0770720:CDS
ATTGTATAGGATGGTTTATT+AGG 0.299453 5_2:+42105851 Msa0770720:intron
AACTAGTGTTTATAATGTTC+TGG 0.315559 5_2:+42110934 Msa0770720:three_prime_UTR
TTTGGGAGGCCTTTAACCCC+TGG 0.341537 5_2:+42109795 Msa0770720:CDS
TCAGGTGAATCACTGCTTAT+GGG 0.342216 5_2:+42109753 Msa0770720:CDS
ATTCACCTGAAAGAAGAAAT+AGG 0.343625 5_2:-42109740 None:intergenic
GTTTGTTGCTTAGTTGCATT+TGG 0.366885 5_2:+42105712 Msa0770720:CDS
AGGAAAGGCATCTTCATTAC+CGG 0.367227 5_2:+42110663 Msa0770720:CDS
ACTTCTCCTGTGAAAGTTTG+AGG 0.369772 5_2:+42110643 Msa0770720:CDS
TGTTCTTGAAATGATGATAC+TGG 0.384874 5_2:+42105886 Msa0770720:CDS
CAATATGTTTCATTTGTTCC+TGG 0.388667 5_2:-42109672 None:intergenic
AGAAGAAAGAAAATATATAA+TGG 0.392892 5_2:-42109835 None:intergenic
TTGGGAGGCCTTTAACCCCT+GGG 0.398501 5_2:+42109796 Msa0770720:CDS
CACTTTCTCAGAAGACCAAT+CGG 0.400256 5_2:+42110760 Msa0770720:CDS
TCCCCGGTATTTGGTGTGAT+AGG 0.408796 5_2:-42110604 None:intergenic
GTGACAAAGTGCATGTGCTT+TGG 0.415268 5_2:+42109777 Msa0770720:CDS
CGAAGGGGATATATGTAATC+AGG 0.416105 5_2:+42111007 Msa0770720:three_prime_UTR
GCCTTTCCTCAAACTTTCAC+AGG 0.425540 5_2:-42110649 None:intergenic
TACAGTTCAGATGTTGCAAC+TGG 0.428312 5_2:+42109699 Msa0770720:CDS
TGACAAAGTGCATGTGCTTT+GGG 0.430960 5_2:+42109778 Msa0770720:CDS
TGTTCCTGGAGTTGTGTGAA+TGG 0.437125 5_2:-42109658 None:intergenic
AGTAGAGTGAGAAGCTGAAA+CGG 0.470607 5_2:-42105585 None:intergenic
CAAGGTCAATCATGCATGTC+CGG 0.491279 5_2:-42110805 None:intergenic
ATGCCTATCACACCAAATAC+CGG 0.505251 5_2:+42110601 Msa0770720:CDS
CGATTGGTCTTCTGAGAAAG+TGG 0.515883 5_2:-42110759 None:intergenic
CACAAACCCATTTCACAAAG+TGG 0.524004 5_2:+42105639 Msa0770720:five_prime_UTR
TAATATCGAAATTTAGGCGA+AGG 0.528725 5_2:+42110990 Msa0770720:three_prime_UTR
TACTCTTTCATATTCATCCA+AGG 0.535313 5_2:-42110823 None:intergenic
GCAGAATCATGCTTAATAGC+TGG 0.536563 5_2:+42110567 Msa0770720:CDS
AATCGGGTTAGTTCCACGAT+TGG 0.543860 5_2:+42110777 Msa0770720:CDS
CGGACATGCATGATTGACCT+TGG 0.545157 5_2:+42110806 Msa0770720:exon
AATATCGAAATTTAGGCGAA+GGG 0.551608 5_2:+42110991 Msa0770720:three_prime_UTR
TGCCTATCACACCAAATACC+GGG 0.552373 5_2:+42110602 Msa0770720:CDS
TCCTGTGAAAGTTTGAGGAA+AGG 0.553407 5_2:+42110648 Msa0770720:CDS
TAGTGTTTATAATGTTCTGG+TGG 0.553637 5_2:+42110937 Msa0770720:three_prime_UTR
ACTTTCTCAGAAGACCAATC+GGG 0.557107 5_2:+42110761 Msa0770720:CDS
TACAACGATGAAAATTGCTC+CGG 0.580379 5_2:-42110682 None:intergenic
GGAACCATTCACACAACTCC+AGG 0.583570 5_2:+42109654 Msa0770720:CDS
AGTTCCACGATTGGAATGAC+CGG 0.588851 5_2:+42110786 Msa0770720:CDS
TGGGAGGCCTTTAACCCCTG+GGG 0.589713 5_2:+42109797 Msa0770720:CDS
AATCGTGGAACTAACCCGAT+TGG 0.605332 5_2:-42110775 None:intergenic
TCTTCTTCTCTCAGCAGCAA+CGG 0.606197 5_2:-42105740 None:intergenic
TCTGAGCATAAATAATTCCC+CGG 0.610710 5_2:-42110620 None:intergenic
GTTGCAACTGGTTATGGAGT+GGG 0.613168 5_2:+42109711 Msa0770720:CDS
TTTACTACTTGGTAAAACAG+TGG 0.633637 5_2:+42110887 Msa0770720:three_prime_UTR
ATATCGAAATTTAGGCGAAG+GGG 0.640496 5_2:+42110992 Msa0770720:three_prime_UTR
GGGAGGCCTTTAACCCCTGG+GGG 0.642259 5_2:+42109798 Msa0770720:CDS
CTTCTGAGAAAGTGGAGTAG+TGG 0.649249 5_2:-42110751 None:intergenic
ATGTCCGGTCATTCCAATCG+TGG 0.657041 5_2:-42110790 None:intergenic
CTACTACATGTACTTCACAA+AGG 0.667346 5_2:+42110725 Msa0770720:CDS
GCCTATCACACCAAATACCG+GGG 0.675980 5_2:+42110603 Msa0770720:CDS
TGTTGCAACTGGTTATGGAG+TGG 0.682410 5_2:+42109710 Msa0770720:CDS
CAAAGTGCATGTGCTTTGGG+AGG 0.685983 5_2:+42109781 Msa0770720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTATATTATTAATTA+AGG + chr5_2:42108022-42108041 Msa0770720:intron 0.0%
!! TCATAATTGATATAATGAAA+CGG + chr5_2:42106546-42106565 Msa0770720:intron 15.0%
!! TGATAAAAATGAGATATTAA+GGG - chr5_2:42106984-42107003 None:intergenic 15.0%
!! TTGATAAAAATGAGATATTA+AGG - chr5_2:42106985-42107004 None:intergenic 15.0%
!!! TTTTTATCAAAATATCTAGT+AGG + chr5_2:42106995-42107014 Msa0770720:intron 15.0%
!! AAAATATTTGAGAAATTTGT+AGG + chr5_2:42107069-42107088 Msa0770720:intron 15.0%
!! AGAAATAAAAAAAAAAACGA+CGG + chr5_2:42107287-42107306 Msa0770720:intron 15.0%
!! ATAAAATAGATTCAGAATAA+AGG + chr5_2:42107394-42107413 Msa0770720:intron 15.0%
!! TAAAATAGATTCAGAATAAA+GGG + chr5_2:42107395-42107414 Msa0770720:intron 15.0%
!! TCAATATCAAATATAATTTC+TGG - chr5_2:42108950-42108969 None:intergenic 15.0%
!!! CTTCATATTTTACATTAATT+TGG + chr5_2:42109604-42109623 Msa0770720:intron 15.0%
!! AGAAGAAAGAAAATATATAA+TGG - chr5_2:42109838-42109857 None:intergenic 15.0%
!!! TTATATATTTTCTTTCTTCT+TGG + chr5_2:42109838-42109857 Msa0770720:CDS 15.0%
!!! ATTATTGGAAATTTCATTTT+TGG + chr5_2:42109985-42110004 Msa0770720:intron 15.0%
!!! TCATCTTTTATTGATTTATT+TGG + chr5_2:42110010-42110029 Msa0770720:intron 15.0%
!!! TATCTGTTTAAGTTTAAGTT+TGG + chr5_2:42105827-42105846 Msa0770720:intron 20.0%
!!! TAGTTATTTTACACTAATTG+AGG + chr5_2:42105988-42106007 Msa0770720:intron 20.0%
!!! AGTTATTTTACACTAATTGA+GGG + chr5_2:42105989-42106008 Msa0770720:intron 20.0%
!!! TTTTTTGAACATGCTAAATT+AGG + chr5_2:42106020-42106039 Msa0770720:intron 20.0%
!! TTATTATAAATGGAAGATGA+AGG + chr5_2:42106173-42106192 Msa0770720:intron 20.0%
!!! TGTGATTGAAGTTTTAAAAA+TGG + chr5_2:42107095-42107114 Msa0770720:intron 20.0%
!!! GTGATTGAAGTTTTAAAAAT+GGG + chr5_2:42107096-42107115 Msa0770720:intron 20.0%
!!! TGATTGAAGTTTTAAAAATG+GGG + chr5_2:42107097-42107116 Msa0770720:intron 20.0%
!! ATTTGCTCAATAAATTATTG+AGG + chr5_2:42107315-42107334 Msa0770720:intron 20.0%
!! TAACTGAAAATACAATATGA+AGG + chr5_2:42107560-42107579 Msa0770720:intron 20.0%
!! AACTGAAAATACAATATGAA+GGG + chr5_2:42107561-42107580 Msa0770720:intron 20.0%
!!! TCATTTTGACTGTAAAAAAA+AGG + chr5_2:42108193-42108212 Msa0770720:intron 20.0%
!!! AAGGTTATTTCAAAGAAAAA+AGG - chr5_2:42108566-42108585 None:intergenic 20.0%
!!! AACCTTCATTTATCTTTTTT+TGG + chr5_2:42108580-42108599 Msa0770720:intron 20.0%
!! AACCAAAAAAAGATAAATGA+AGG - chr5_2:42108585-42108604 None:intergenic 20.0%
!!! TCTTTTTGTGAAAATAAATC+AGG + chr5_2:42108793-42108812 Msa0770720:intron 20.0%
!!! CTTTTTGTGAAAATAAATCA+GGG + chr5_2:42108794-42108813 Msa0770720:intron 20.0%
!! AAGCAAAATCTAAACAAAAA+TGG + chr5_2:42109023-42109042 Msa0770720:intron 20.0%
!! AATCTAAACAAAAATGGAAT+AGG + chr5_2:42109029-42109048 Msa0770720:intron 20.0%
!! AGAAAACATGCATAATAAAA+AGG - chr5_2:42109260-42109279 None:intergenic 20.0%
!! ATGTAAAAGAATTTGTAGAA+GGG - chr5_2:42109289-42109308 None:intergenic 20.0%
!!! TTTCCAATAATTTTTTTCAC+TGG - chr5_2:42109976-42109995 None:intergenic 20.0%
!!! TATTGATTTATTTGGTTGAT+TGG + chr5_2:42110018-42110037 Msa0770720:intron 20.0%
!! ACTAACAAAGAACATATTTA+TGG + chr5_2:42110198-42110217 Msa0770720:intron 20.0%
!! AAAACAAAAAACACATATAG+TGG - chr5_2:42110388-42110407 None:intergenic 20.0%
!! TTCCATTAATATCGAAATTT+AGG + chr5_2:42110984-42111003 Msa0770720:three_prime_UTR 20.0%
!! TTTTTACCACTTTGTGAAAT+GGG - chr5_2:42105648-42105667 None:intergenic 25.0%
!! ATTTTTACCACTTTGTGAAA+TGG - chr5_2:42105649-42105668 None:intergenic 25.0%
! ATTTCACAAAGTGGTAAAAA+TGG + chr5_2:42105648-42105667 Msa0770720:exon 25.0%
!!! GATCTCTTTAAAATGAACAA+TGG - chr5_2:42105793-42105812 None:intergenic 25.0%
!! GTTTAAGTTTGGAATTGTAT+AGG + chr5_2:42105838-42105857 Msa0770720:intron 25.0%
! ATTGTATAGGATGGTTTATT+AGG + chr5_2:42105851-42105870 Msa0770720:intron 25.0%
! TGTTCATGATGATTATAAGA+AGG + chr5_2:42105940-42105959 Msa0770720:intron 25.0%
!!! GTTATTTTACACTAATTGAG+GGG + chr5_2:42105990-42106009 Msa0770720:intron 25.0%
! AATGGATGATAAGGTTAATT+TGG - chr5_2:42106140-42106159 None:intergenic 25.0%
! AACATATTTATACACTCAAC+AGG - chr5_2:42106434-42106453 None:intergenic 25.0%
! TGTTAAATGTTAAATGTGCT+TGG - chr5_2:42106497-42106516 None:intergenic 25.0%
! TTAACATTTAACAGAGATGA+TGG + chr5_2:42106504-42106523 Msa0770720:intron 25.0%
! TAACATTTAACAGAGATGAT+GGG + chr5_2:42106505-42106524 Msa0770720:intron 25.0%
!! AAAAAAGATTCTCTAGAAGT+GGG + chr5_2:42106825-42106844 Msa0770720:intron 25.0%
! TATTTGTGTCGAAGAAATAA+TGG + chr5_2:42106853-42106872 Msa0770720:intron 25.0%
!!! GATTGAAGTTTTAAAAATGG+GGG + chr5_2:42107098-42107117 Msa0770720:intron 25.0%
!! GACTTTTAAATGGAATATGA+TGG + chr5_2:42107127-42107146 Msa0770720:intron 25.0%
! TTAAATGGAATATGATGGTT+TGG + chr5_2:42107132-42107151 Msa0770720:intron 25.0%
! AATGCAAAAGATAGACTTAA+TGG + chr5_2:42107256-42107275 Msa0770720:intron 25.0%
! AACCAAATAACAAATATGAG+AGG + chr5_2:42107369-42107388 Msa0770720:intron 25.0%
! ACCAAATAACAAATATGAGA+GGG + chr5_2:42107370-42107389 Msa0770720:intron 25.0%
! AATAAAGGGCAGAATATAAT+AGG + chr5_2:42107409-42107428 Msa0770720:intron 25.0%
! ATTTCAAGAACATGGTAAAT+TGG - chr5_2:42107734-42107753 None:intergenic 25.0%
! AATTTACCATGTTCTTGAAA+TGG + chr5_2:42107733-42107752 Msa0770720:intron 25.0%
! TCAAAATGAAGAAGAAGAAA+GGG - chr5_2:42108182-42108201 None:intergenic 25.0%
! TATTTAAGCACTAGAAAGAA+GGG + chr5_2:42108636-42108655 Msa0770720:intron 25.0%
!! AAGGGATATTTCATATTTTC+TGG + chr5_2:42108898-42108917 Msa0770720:intron 25.0%
!! TTATAGTTCTATAAAGAGCA+TGG - chr5_2:42109056-42109075 None:intergenic 25.0%
! AAGTTATGAAAAACAATGGA+GGG - chr5_2:42109149-42109168 None:intergenic 25.0%
! AGTGAAGTTATGAAAAACAA+TGG - chr5_2:42109153-42109172 None:intergenic 25.0%
! ATGCATAATAAAAAGGATGA+TGG - chr5_2:42109253-42109272 None:intergenic 25.0%
! TGTAAAAGAATTTGTAGAAG+GGG - chr5_2:42109288-42109307 None:intergenic 25.0%
! CATGTAAAAGAATTTGTAGA+AGG - chr5_2:42109290-42109309 None:intergenic 25.0%
!! CTACAAATTCTTTTACATGA+AGG + chr5_2:42109291-42109310 Msa0770720:intron 25.0%
!! CTGTCAATTTTATCTTCATA+GGG + chr5_2:42109401-42109420 Msa0770720:intron 25.0%
!!! TAGATTGATTGTGTTGTTTA+AGG + chr5_2:42109460-42109479 Msa0770720:intron 25.0%
!!! TTGTTTAAGGTATTTTGTGA+GGG + chr5_2:42109473-42109492 Msa0770720:intron 25.0%
! TGTATGCTTTAATGTTTCAT+CGG + chr5_2:42109562-42109581 Msa0770720:intron 25.0%
! TGTCCAGTGAAAAAAATTAT+TGG + chr5_2:42109970-42109989 Msa0770720:intron 25.0%
!!! TTTTTGTTTTGCTACATTGA+AGG - chr5_2:42110072-42110091 None:intergenic 25.0%
! TTTGGTTAGAATAACCAAAT+AGG + chr5_2:42110347-42110366 Msa0770720:intron 25.0%
! ATGAAACAATGATTCCTATT+TGG - chr5_2:42110364-42110383 None:intergenic 25.0%
! CAAATTTATTGTGATCTATG+AGG + chr5_2:42110457-42110476 Msa0770720:intron 25.0%
!!! TTTTTTTCTTCCTTTTTTCC+AGG + chr5_2:42110529-42110548 Msa0770720:intron 25.0%
!!! TTTTTTCTTCCTTTTTTCCA+GGG + chr5_2:42110530-42110549 Msa0770720:intron 25.0%
!!! AGTAACAAATTTTGAGTGTT+CGG + chr5_2:42110842-42110861 Msa0770720:three_prime_UTR 25.0%
! AACTAGTGTTTATAATGTTC+TGG + chr5_2:42110934-42110953 Msa0770720:three_prime_UTR 25.0%
!! AAAGTGTGTAGAATATTTTG+AGG + chr5_2:42111050-42111069 Msa0770720:three_prime_UTR 25.0%
! AAGTTTGGAATTGTATAGGA+TGG + chr5_2:42105842-42105861 Msa0770720:intron 30.0%
TGTTCTTGAAATGATGATAC+TGG + chr5_2:42105886-42105905 Msa0770720:CDS 30.0%
GTAAAATAACTAATTCCCCT+CGG - chr5_2:42105980-42105999 None:intergenic 30.0%
AATAACAGTGAGCACATAAA+TGG - chr5_2:42106158-42106177 None:intergenic 30.0%
GTGCTCACTGTTATTATAAA+TGG + chr5_2:42106163-42106182 Msa0770720:intron 30.0%
!! ATTTTTGGAGGAATTAGAAG+TGG + chr5_2:42106629-42106648 Msa0770720:intron 30.0%
!! TTTTTGGAGGAATTAGAAGT+GGG + chr5_2:42106630-42106649 Msa0770720:intron 30.0%
! GAAAAAAGATTCTCTAGAAG+TGG + chr5_2:42106824-42106843 Msa0770720:intron 30.0%
AATGAGATATTAAGGGTTCT+AGG - chr5_2:42106977-42106996 None:intergenic 30.0%
TTTGGCTACTTAAATTTGTG+TGG + chr5_2:42107150-42107169 Msa0770720:intron 30.0%
AATTTGTGTGGAAGAAGATT+TGG + chr5_2:42107162-42107181 Msa0770720:intron 30.0%
ACTGAGAATTTCTTGTTCAT+TGG + chr5_2:42107475-42107494 Msa0770720:intron 30.0%
CACAAGTTATGTAGTGAAAT+AGG + chr5_2:42107633-42107652 Msa0770720:intron 30.0%
AGTAGAAAAGACAGTACAAT+AGG - chr5_2:42107664-42107683 None:intergenic 30.0%
! TGTTTTCTTTTGATGTTGCA+TGG + chr5_2:42107869-42107888 Msa0770720:intron 30.0%
GTCAAAATGAAGAAGAAGAA+AGG - chr5_2:42108183-42108202 None:intergenic 30.0%
! TGCTAGAATACATTTTGCAT+TGG + chr5_2:42108488-42108507 Msa0770720:intron 30.0%
! CTTCTTTCTAGTGCTTAAAT+AGG - chr5_2:42108637-42108656 None:intergenic 30.0%
CTATTTAAGCACTAGAAAGA+AGG + chr5_2:42108635-42108654 Msa0770720:intron 30.0%
TGAAAATAAATCAGGGAATG+AGG + chr5_2:42108801-42108820 Msa0770720:intron 30.0%
TTCACATATGCATTCAGTAA+GGG + chr5_2:42108880-42108899 Msa0770720:intron 30.0%
! GGATATTTCATATTTTCTGG+TGG + chr5_2:42108901-42108920 Msa0770720:intron 30.0%
! ATTTTGCTTCCAGTATCATA+GGG - chr5_2:42109012-42109031 None:intergenic 30.0%
GAAGTTATGAAAAACAATGG+AGG - chr5_2:42109150-42109169 None:intergenic 30.0%
! ATAAAAAGGATGATGGCATA+GGG - chr5_2:42109246-42109265 None:intergenic 30.0%
! AATAAAAAGGATGATGGCAT+AGG - chr5_2:42109247-42109266 None:intergenic 30.0%
AGGGAAAAAAGAATATGTGA+GGG - chr5_2:42109354-42109373 None:intergenic 30.0%
AAGGGAAAAAAGAATATGTG+AGG - chr5_2:42109355-42109374 None:intergenic 30.0%
CCTATGAAGATAAAATTGAC+AGG - chr5_2:42109403-42109422 None:intergenic 30.0%
! CCTGTCAATTTTATCTTCAT+AGG + chr5_2:42109400-42109419 Msa0770720:intron 30.0%
ATGTCAAAAAGAAACATAGC+AGG + chr5_2:42109429-42109448 Msa0770720:intron 30.0%
!! GTTGTTTAAGGTATTTTGTG+AGG + chr5_2:42109472-42109491 Msa0770720:intron 30.0%
CATGGAGTAAAACTAGAATT+AGG + chr5_2:42109496-42109515 Msa0770720:intron 30.0%
AGTAAAACTAGAATTAGGCA+TGG + chr5_2:42109501-42109520 Msa0770720:intron 30.0%
AGTAAAACTCGAATTAGTCA+TGG + chr5_2:42109524-42109543 Msa0770720:intron 30.0%
CAATATGTTTCATTTGTTCC+TGG - chr5_2:42109675-42109694 None:intergenic 30.0%
ATTCACCTGAAAGAAGAAAT+AGG - chr5_2:42109743-42109762 None:intergenic 30.0%
AAATGAGTAAGACACACTTT+GGG - chr5_2:42110100-42110119 None:intergenic 30.0%
ATGTTCTTTGTTAGTCAACT+TGG - chr5_2:42110193-42110212 None:intergenic 30.0%
! TTTTATCCGTTAATTGTGTG+AGG - chr5_2:42110269-42110288 None:intergenic 30.0%
!!! ACTCATTTTGGCTATAGATT+TGG + chr5_2:42110329-42110348 Msa0770720:intron 30.0%
ATAAATAATTCCCCGGTATT+TGG - chr5_2:42110616-42110635 None:intergenic 30.0%
! AATTTTCATCGTTGTAACGA+TGG + chr5_2:42110689-42110708 Msa0770720:CDS 30.0%
TACTCTTTCATATTCATCCA+AGG - chr5_2:42110826-42110845 None:intergenic 30.0%
! TCTCTGTGATTTTTACTACT+TGG + chr5_2:42110876-42110895 Msa0770720:three_prime_UTR 30.0%
TTTACTACTTGGTAAAACAG+TGG + chr5_2:42110887-42110906 Msa0770720:three_prime_UTR 30.0%
TAGTGTTTATAATGTTCTGG+TGG + chr5_2:42110937-42110956 Msa0770720:three_prime_UTR 30.0%
CGCCTAAATTTCGATATTAA+TGG - chr5_2:42110989-42111008 None:intergenic 30.0%
TAATATCGAAATTTAGGCGA+AGG + chr5_2:42110990-42111009 Msa0770720:three_prime_UTR 30.0%
AATATCGAAATTTAGGCGAA+GGG + chr5_2:42110991-42111010 Msa0770720:three_prime_UTR 30.0%
AAAGTGGTAAAAATGGCAGA+GGG + chr5_2:42105655-42105674 Msa0770720:exon 35.0%
! GTTTGTTGCTTAGTTGCATT+TGG + chr5_2:42105712-42105731 Msa0770720:CDS 35.0%
GTTCCTCCAAATGTCAATTT+GGG - chr5_2:42106049-42106068 None:intergenic 35.0%
AGTTCCTCCAAATGTCAATT+TGG - chr5_2:42106050-42106069 None:intergenic 35.0%
GAGCACATAAATGGATGATA+AGG - chr5_2:42106149-42106168 None:intergenic 35.0%
! GGAAACATTTGCTACTTGTT+TGG + chr5_2:42106583-42106602 Msa0770720:intron 35.0%
! ACATTTGCTACTTGTTTGGA+AGG + chr5_2:42106587-42106606 Msa0770720:intron 35.0%
TTGTGTCGAAGAAATAATGG+TGG + chr5_2:42106856-42106875 Msa0770720:intron 35.0%
TTAGCTCAACGAAAACTCAA+GGG - chr5_2:42106899-42106918 None:intergenic 35.0%
ATTAGCTCAACGAAAACTCA+AGG - chr5_2:42106900-42106919 None:intergenic 35.0%
GAAGAAGGTAATTGACAACA+TGG - chr5_2:42106955-42106974 None:intergenic 35.0%
!! TATTAAGGGTTCTAGGAAGA+AGG - chr5_2:42106970-42106989 None:intergenic 35.0%
!! GGGGAGATTTGACTTTTAAA+TGG + chr5_2:42107117-42107136 Msa0770720:intron 35.0%
!! GCCCTCTCATATTTGTTATT+TGG - chr5_2:42107374-42107393 None:intergenic 35.0%
TCTTGTTCATTGGAAAAACG+AGG + chr5_2:42107485-42107504 Msa0770720:intron 35.0%
! CTTAGTGCACATAGTGATTT+TGG - chr5_2:42107699-42107718 None:intergenic 35.0%
AAATCACTATGTGCACTAAG+TGG + chr5_2:42107699-42107718 Msa0770720:intron 35.0%
TTCAAGCATAGTTGTCAAAG+CGG + chr5_2:42107907-42107926 Msa0770720:intron 35.0%
GATTAGAGATCTAGAGATCT+AGG - chr5_2:42108144-42108163 None:intergenic 35.0%
! AGAACAGAGATGAGATTTTG+TGG + chr5_2:42108227-42108246 Msa0770720:intron 35.0%
TATGTTGTACCATTGCTTGA+AGG - chr5_2:42108458-42108477 None:intergenic 35.0%
TTACCTTCTACTGTGTAAAG+AGG + chr5_2:42108610-42108629 Msa0770720:intron 35.0%
GTTCACATATGCATTCAGTA+AGG + chr5_2:42108879-42108898 Msa0770720:intron 35.0%
GGTCGAATCACATATATGAA+CGG - chr5_2:42108929-42108948 None:intergenic 35.0%
! GATTTTGCTTCCAGTATCAT+AGG - chr5_2:42109013-42109032 None:intergenic 35.0%
AACAAGGCAATGGAGTAAAA+GGG - chr5_2:42109373-42109392 None:intergenic 35.0%
TAACAAGGCAATGGAGTAAA+AGG - chr5_2:42109374-42109393 None:intergenic 35.0%
! TACTCCATTGCCTTGTTAAT+TGG + chr5_2:42109376-42109395 Msa0770720:intron 35.0%
! ACTCCATTGCCTTGTTAATT+GGG + chr5_2:42109377-42109396 Msa0770720:intron 35.0%
! GCTTTCCTATTTCTTCTTTC+AGG + chr5_2:42109735-42109754 Msa0770720:CDS 35.0%
!! GGTTGATTGGTTTAAGTATG+TGG + chr5_2:42110031-42110050 Msa0770720:intron 35.0%
GAAATGAGTAAGACACACTT+TGG - chr5_2:42110101-42110120 None:intergenic 35.0%
AAGTGTGTCTTACTCATTTC+AGG + chr5_2:42110101-42110120 Msa0770720:intron 35.0%
AGTGTGTCTTACTCATTTCA+GGG + chr5_2:42110102-42110121 Msa0770720:intron 35.0%
TACTCATTTCAGGGTTCAAA+CGG + chr5_2:42110111-42110130 Msa0770720:intron 35.0%
ACAATGCCTCACACAATTAA+CGG + chr5_2:42110260-42110279 Msa0770720:intron 35.0%
CTATAGCCAAAATGAGTGAA+GGG - chr5_2:42110326-42110345 None:intergenic 35.0%
TCTATAGCCAAAATGAGTGA+AGG - chr5_2:42110327-42110346 None:intergenic 35.0%
TTTATTCACACGAAGCTTCT+TGG + chr5_2:42110406-42110425 Msa0770720:intron 35.0%
TCTGAGCATAAATAATTCCC+CGG - chr5_2:42110623-42110642 None:intergenic 35.0%
TACAACGATGAAAATTGCTC+CGG - chr5_2:42110685-42110704 None:intergenic 35.0%
CTACTACATGTACTTCACAA+AGG + chr5_2:42110725-42110744 Msa0770720:CDS 35.0%
!!! GTAAAACAGTGGTTTTGACT+TGG + chr5_2:42110898-42110917 Msa0770720:three_prime_UTR 35.0%
ATATCGAAATTTAGGCGAAG+GGG + chr5_2:42110992-42111011 Msa0770720:three_prime_UTR 35.0%
AGTAGAGTGAGAAGCTGAAA+CGG - chr5_2:42105588-42105607 None:intergenic 40.0%
CACAAACCCATTTCACAAAG+TGG + chr5_2:42105639-42105658 Msa0770720:five_prime_UTR 40.0%
CAAAGTGGTAAAAATGGCAG+AGG + chr5_2:42105654-42105673 Msa0770720:exon 40.0%
AGGTCACCCAAATTGACATT+TGG + chr5_2:42106040-42106059 Msa0770720:intron 40.0%
TCACCCAAATTGACATTTGG+AGG + chr5_2:42106043-42106062 Msa0770720:intron 40.0%
TTTCCAGTCAACTGTGGTAT+TGG - chr5_2:42106089-42106108 None:intergenic 40.0%
GAAGGTAAATGTATCAGAGC+CGG + chr5_2:42106191-42106210 Msa0770720:intron 40.0%
AAGGTAAATGTATCAGAGCC+GGG + chr5_2:42106192-42106211 Msa0770720:intron 40.0%
TTGGATCTCATCCTAAAAGC+TGG - chr5_2:42106478-42106497 None:intergenic 40.0%
AAGTGGGATGTTAACTCGTT+CGG + chr5_2:42106646-42106665 Msa0770720:intron 40.0%
GAGTTTAGGAAATTCTCCCT+CGG - chr5_2:42106686-42106705 None:intergenic 40.0%
AATTTCCTAAACTCCGACTG+TGG + chr5_2:42106692-42106711 Msa0770720:intron 40.0%
ATTTCCTAAACTCCGACTGT+GGG + chr5_2:42106693-42106712 Msa0770720:intron 40.0%
!! TAATGCTGATTTCCCACAGT+CGG - chr5_2:42106708-42106727 None:intergenic 40.0%
TATTGAGGAAGCCATAGTAG+AGG + chr5_2:42107330-42107349 Msa0770720:intron 40.0%
CACGCTAATTTCCTCTACTA+TGG - chr5_2:42107344-42107363 None:intergenic 40.0%
!! AAAAACGAGGTCTCTGGAAT+AGG + chr5_2:42107498-42107517 Msa0770720:intron 40.0%
!! AAAACGAGGTCTCTGGAATA+GGG + chr5_2:42107499-42107518 Msa0770720:intron 40.0%
!! GAAGGGCAGTTTTTGTTTGA+TGG + chr5_2:42107578-42107597 Msa0770720:intron 40.0%
GCAACACCATTTCAAGAACA+TGG - chr5_2:42107742-42107761 None:intergenic 40.0%
GCTTTGACAACTATGCTTGA+AGG - chr5_2:42107908-42107927 None:intergenic 40.0%
GAAGGCTATGTTGTCAATAG+CGG - chr5_2:42108440-42108459 None:intergenic 40.0%
ACAACATAGCCTTCAAGCAA+TGG + chr5_2:42108446-42108465 Msa0770720:intron 40.0%
CAAGCAATGGTACAACATAC+CGG + chr5_2:42108459-42108478 Msa0770720:intron 40.0%
AAGCAATGGTACAACATACC+GGG + chr5_2:42108460-42108479 Msa0770720:intron 40.0%
GCAAAATGTATTCTAGCACC+AGG - chr5_2:42108486-42108505 None:intergenic 40.0%
AGAAAGAAGGGTTGAGTAGA+TGG + chr5_2:42108648-42108667 Msa0770720:intron 40.0%
GAGGATAGCTCAATAGTTAG+AGG + chr5_2:42108670-42108689 Msa0770720:intron 40.0%
GTAGAGAGAAGAACAGCAAT+AGG + chr5_2:42108692-42108711 Msa0770720:intron 40.0%
! AATGTCTAGAACTCTCCTAG+TGG - chr5_2:42108723-42108742 None:intergenic 40.0%
!! CTAGGAGAGTTCTAGACATT+TGG + chr5_2:42108723-42108742 Msa0770720:intron 40.0%
CTCTGAATTCCCTATGATAC+TGG + chr5_2:42109000-42109019 Msa0770720:intron 40.0%
! TTGATAACCCCTAGATGAGA+AGG + chr5_2:42109099-42109118 Msa0770720:intron 40.0%
ATCAGGTTCCTTCTCATCTA+GGG - chr5_2:42109110-42109129 None:intergenic 40.0%
AATCAGGTTCCTTCTCATCT+AGG - chr5_2:42109111-42109130 None:intergenic 40.0%
AAAAACAATGGAGGGTCTGT+CGG - chr5_2:42109141-42109160 None:intergenic 40.0%
AGGATTTGGAAATGTGAGGA+GGG - chr5_2:42109215-42109234 None:intergenic 40.0%
GGGAAGTGAAAGAGAAAAAC+AGG - chr5_2:42109334-42109353 None:intergenic 40.0%
ATTGACAGGCCCAATTAACA+AGG - chr5_2:42109389-42109408 None:intergenic 40.0%
!! TAAGGTATTTTGTGAGGGCA+TGG + chr5_2:42109478-42109497 Msa0770720:intron 40.0%
TACAGTTCAGATGTTGCAAC+TGG + chr5_2:42109699-42109718 Msa0770720:CDS 40.0%
TCAGATGTTGCAACTGGTTA+TGG + chr5_2:42109705-42109724 Msa0770720:CDS 40.0%
TTCAGGTGAATCACTGCTTA+TGG + chr5_2:42109752-42109771 Msa0770720:CDS 40.0%
TCAGGTGAATCACTGCTTAT+GGG + chr5_2:42109753-42109772 Msa0770720:CDS 40.0%
TGACAAAGTGCATGTGCTTT+GGG + chr5_2:42109778-42109797 Msa0770720:CDS 40.0%
AGAGCCAAACTAACGAACAA+AGG + chr5_2:42110154-42110173 Msa0770720:intron 40.0%
GTGTCCTTTGTTCGTTAGTT+TGG - chr5_2:42110161-42110180 None:intergenic 40.0%
! ACACAACCCTTCACTCATTT+TGG + chr5_2:42110317-42110336 Msa0770720:intron 40.0%
GAAAAGTAGCCCTGGAAAAA+AGG - chr5_2:42110542-42110561 None:intergenic 40.0%
!!! TTTTTCCAGGGCTACTTTTC+TGG + chr5_2:42110542-42110561 Msa0770720:intron 40.0%
GCAGAATCATGCTTAATAGC+TGG + chr5_2:42110567-42110586 Msa0770720:CDS 40.0%
ATGCCTATCACACCAAATAC+CGG + chr5_2:42110601-42110620 Msa0770720:CDS 40.0%
ACTTCTCCTGTGAAAGTTTG+AGG + chr5_2:42110643-42110662 Msa0770720:CDS 40.0%
TCCTGTGAAAGTTTGAGGAA+AGG + chr5_2:42110648-42110667 Msa0770720:CDS 40.0%
!! AGGAAAGGCATCTTCATTAC+CGG + chr5_2:42110663-42110682 Msa0770720:CDS 40.0%
CACTTTCTCAGAAGACCAAT+CGG + chr5_2:42110760-42110779 Msa0770720:CDS 40.0%
ACTTTCTCAGAAGACCAATC+GGG + chr5_2:42110761-42110780 Msa0770720:CDS 40.0%
!!! TGGTGGATTTTACTGCTCTA+AGG + chr5_2:42110954-42110973 Msa0770720:three_prime_UTR 40.0%
CGAAGGGGATATATGTAATC+AGG + chr5_2:42111007-42111026 Msa0770720:three_prime_UTR 40.0%
GTAAAAATGGCAGAGGGAAG+AGG + chr5_2:42105661-42105680 Msa0770720:exon 45.0%
TCTTCTTCTCTCAGCAGCAA+CGG - chr5_2:42105743-42105762 None:intergenic 45.0%
!! AGGCACTGTGTTTTAAACCG+AGG + chr5_2:42105960-42105979 Msa0770720:intron 45.0%
!! GGCACTGTGTTTTAAACCGA+GGG + chr5_2:42105961-42105980 Msa0770720:intron 45.0%
!! GCACTGTGTTTTAAACCGAG+GGG + chr5_2:42105962-42105981 Msa0770720:intron 45.0%
!! GTCAACTGTGGTATTGGTCA+AGG - chr5_2:42106083-42106102 None:intergenic 45.0%
TGACCAATACCACAGTTGAC+TGG + chr5_2:42106083-42106102 Msa0770720:intron 45.0%
TCACAGTTTCCAGTCAACTG+TGG - chr5_2:42106095-42106114 None:intergenic 45.0%
AATGTATCAGAGCCGGGTTA+AGG + chr5_2:42106198-42106217 Msa0770720:intron 45.0%
! TAGTTTGTCCCACATCGTTC+AGG + chr5_2:42106299-42106318 Msa0770720:intron 45.0%
AAGGATTGCGATGTGGGAAT+TGG + chr5_2:42106217-42106236 Msa0770720:intron 45.0%
! AAAGCTGGCTCAAAGGATGA+GGG - chr5_2:42106463-42106482 None:intergenic 45.0%
! AAAAGCTGGCTCAAAGGATG+AGG - chr5_2:42106464-42106483 None:intergenic 45.0%
! CATCCTTTGAGCCAGCTTTT+AGG + chr5_2:42106464-42106483 Msa0770720:intron 45.0%
! CATCCTAAAAGCTGGCTCAA+AGG - chr5_2:42106470-42106489 None:intergenic 45.0%
GAAACGGAGTGTGTCTATCA+TGG + chr5_2:42106562-42106581 Msa0770720:intron 45.0%
! TACTTGTTTGGAAGGAGCGT+GGG + chr5_2:42106595-42106614 Msa0770720:intron 45.0%
!!! TGGGTGATGGGGACTATTTT+TGG + chr5_2:42106614-42106633 Msa0770720:intron 45.0%
!!! GTGATGGGGACTATTTTTGG+AGG + chr5_2:42106617-42106636 Msa0770720:intron 45.0%
AGTGGGATGTTAACTCGTTC+GGG + chr5_2:42106647-42106666 Msa0770720:intron 45.0%
GGGAAATCACATTAGACCGA+GGG + chr5_2:42106667-42106686 Msa0770720:intron 45.0%
ATTTCCCACAGTCGGAGTTT+AGG - chr5_2:42106700-42106719 None:intergenic 45.0%
CATTGGAAAAACGAGGTCTC+TGG + chr5_2:42107492-42107511 Msa0770720:intron 45.0%
!! CTCTGGAATAGGGAAGTTTC+TGG + chr5_2:42107509-42107528 Msa0770720:intron 45.0%
! TGGAATAGGGAAGTTTCTGG+AGG + chr5_2:42107512-42107531 Msa0770720:intron 45.0%
! AATAGGGAAGTTTCTGGAGG+TGG + chr5_2:42107515-42107534 Msa0770720:intron 45.0%
AAAGGGGAAATGGCAACACA+GGG - chr5_2:42107807-42107826 None:intergenic 45.0%
TAGTTGTCAAAGCGGAAACG+CGG + chr5_2:42107915-42107934 Msa0770720:intron 45.0%
AGGCAAAAGCGGAACAAAAG+CGG - chr5_2:42108342-42108361 None:intergenic 45.0%
TTGTCAATAGCGGTCTAACG+CGG - chr5_2:42108430-42108449 None:intergenic 45.0%
! TGGACTGCATGTCATTTGTC+CGG + chr5_2:42108508-42108527 Msa0770720:intron 45.0%
AGAATGATACGCTACTGTGC+CGG - chr5_2:42108530-42108549 None:intergenic 45.0%
GGTCCTCTTTACACAGTAGA+AGG - chr5_2:42108616-42108635 None:intergenic 45.0%
AAGAAGGGTTGAGTAGATGG+AGG + chr5_2:42108651-42108670 Msa0770720:intron 45.0%
CAGCAATAGGTCAAACCACT+AGG + chr5_2:42108705-42108724 Msa0770720:intron 45.0%
AGACCAAGAGGTCATAGGTT+AGG - chr5_2:42108750-42108769 None:intergenic 45.0%
TCAGGTTCCTTCTCATCTAG+GGG - chr5_2:42109109-42109128 None:intergenic 45.0%
AAAACAATGGAGGGTCTGTC+GGG - chr5_2:42109140-42109159 None:intergenic 45.0%
GAGGATTTGGAAATGTGAGG+AGG - chr5_2:42109216-42109235 None:intergenic 45.0%
ATAGGGAATTGGGGAGGATT+TGG - chr5_2:42109229-42109248 None:intergenic 45.0%
! GATGATGGCATAGGGAATTG+GGG - chr5_2:42109238-42109257 None:intergenic 45.0%
! GGATGATGGCATAGGGAATT+GGG - chr5_2:42109239-42109258 None:intergenic 45.0%
! AGGATGATGGCATAGGGAAT+TGG - chr5_2:42109240-42109259 None:intergenic 45.0%
! CTTTTACATGAAGGCCTCGA+TGG + chr5_2:42109300-42109319 Msa0770720:intron 45.0%
AGGCCCAATTAACAAGGCAA+TGG - chr5_2:42109383-42109402 None:intergenic 45.0%
TGTGAAGCAATAGCGAAGAG+AGG - chr5_2:42109633-42109652 None:intergenic 45.0%
TCTCTTCGCTATTGCTTCAC+AGG + chr5_2:42109632-42109651 Msa0770720:intron 45.0%
CTCTTCGCTATTGCTTCACA+GGG + chr5_2:42109633-42109652 Msa0770720:intron 45.0%
TGTTCCTGGAGTTGTGTGAA+TGG - chr5_2:42109661-42109680 None:intergenic 45.0%
TGTTGCAACTGGTTATGGAG+TGG + chr5_2:42109710-42109729 Msa0770720:CDS 45.0%
GTTGCAACTGGTTATGGAGT+GGG + chr5_2:42109711-42109730 Msa0770720:CDS 45.0%
GTGACAAAGTGCATGTGCTT+TGG + chr5_2:42109777-42109796 Msa0770720:CDS 45.0%
TTCATCTGAGCACGCTGATA+CGG + chr5_2:42109896-42109915 Msa0770720:intron 45.0%
!! CGTTAGTTTGGCTCTCGAAT+GGG - chr5_2:42110149-42110168 None:intergenic 45.0%
!! TCGTTAGTTTGGCTCTCGAA+TGG - chr5_2:42110150-42110169 None:intergenic 45.0%
TGCCTATCACACCAAATACC+GGG + chr5_2:42110602-42110621 Msa0770720:CDS 45.0%
GCCTTTCCTCAAACTTTCAC+AGG - chr5_2:42110652-42110671 None:intergenic 45.0%
! CTTCTGAGAAAGTGGAGTAG+TGG - chr5_2:42110754-42110773 None:intergenic 45.0%
!! CGATTGGTCTTCTGAGAAAG+TGG - chr5_2:42110762-42110781 None:intergenic 45.0%
AATCGTGGAACTAACCCGAT+TGG - chr5_2:42110778-42110797 None:intergenic 45.0%
!! AATCGGGTTAGTTCCACGAT+TGG + chr5_2:42110777-42110796 Msa0770720:CDS 45.0%
AGTTCCACGATTGGAATGAC+CGG + chr5_2:42110786-42110805 Msa0770720:CDS 45.0%
CAAGGTCAATCATGCATGTC+CGG - chr5_2:42110808-42110827 None:intergenic 45.0%
!! GTGGTATTGGTCAAGGTCTC+AGG - chr5_2:42106076-42106095 None:intergenic 50.0%
CCACATCGCAATCCTTAACC+CGG - chr5_2:42106213-42106232 None:intergenic 50.0%
CGGGTTAAGGATTGCGATGT+GGG + chr5_2:42106211-42106230 Msa0770720:intron 50.0%
GCGATGTGGGAATTTGACCA+AGG + chr5_2:42106224-42106243 Msa0770720:intron 50.0%
TCGGGTTAAGGATTGCGATG+TGG + chr5_2:42106331-42106350 Msa0770720:intron 50.0%
CGGGTTAAGGATTGCGATGT+GGG + chr5_2:42106211-42106230 Msa0770720:intron 50.0%
TTGTTAGTCCCACATCGCTC+AGG + chr5_2:42106406-42106425 Msa0770720:intron 50.0%
AACAGGAACCTGAGCGATGT+GGG - chr5_2:42106417-42106436 None:intergenic 50.0%
CTACTTGTTTGGAAGGAGCG+TGG + chr5_2:42106594-42106613 Msa0770720:intron 50.0%
CGGGAAATCACATTAGACCG+AGG + chr5_2:42106666-42106685 Msa0770720:intron 50.0%
! GTTTCTGGAGGTGGAATGTG+AGG + chr5_2:42107524-42107543 Msa0770720:intron 50.0%
AGGTGGAATGTGAGGTGAGA+TGG + chr5_2:42107532-42107551 Msa0770720:intron 50.0%
GGTGGAATGTGAGGTGAGAT+GGG + chr5_2:42107533-42107552 Msa0770720:intron 50.0%
GTGGAATGTGAGGTGAGATG+GGG + chr5_2:42107534-42107553 Msa0770720:intron 50.0%
TGGAATGTGAGGTGAGATGG+GGG + chr5_2:42107535-42107554 Msa0770720:intron 50.0%
CAAAGGGGAAATGGCAACAC+AGG - chr5_2:42107808-42107827 None:intergenic 50.0%
TTGCGCATGCAAAGGGGAAA+TGG - chr5_2:42107817-42107836 None:intergenic 50.0%
CTTCACTTGCGCATGCAAAG+GGG - chr5_2:42107823-42107842 None:intergenic 50.0%
CCTTCACTTGCGCATGCAAA+GGG - chr5_2:42107824-42107843 None:intergenic 50.0%
AGCCACCCGAAAAATTGACG+CGG + chr5_2:42107946-42107965 Msa0770720:intron 50.0%
GAACAAAAGCGGGTCAACAC+GGG - chr5_2:42108331-42108350 None:intergenic 50.0%
GGAACAAAAGCGGGTCAACA+CGG - chr5_2:42108332-42108351 None:intergenic 50.0%
GGCAAAAGCGGAACAAAAGC+GGG - chr5_2:42108341-42108360 None:intergenic 50.0%
ATGTATTCTAGCACCAGGCC+CGG - chr5_2:42108481-42108500 None:intergenic 50.0%
GGACCTAACCTATGACCTCT+TGG + chr5_2:42108744-42108763 Msa0770720:intron 50.0%
TCGTGAGACCAAGAGGTCAT+AGG - chr5_2:42108755-42108774 None:intergenic 50.0%
ATTCGTGTCGTGAGACCAAG+AGG - chr5_2:42108762-42108781 None:intergenic 50.0%
AAACAATGGAGGGTCTGTCG+GGG - chr5_2:42109139-42109158 None:intergenic 50.0%
! CAGAGGGTGTAACAGAATCG+AGG - chr5_2:42109180-42109199 None:intergenic 50.0%
CTCGATTCTGTTACACCCTC+TGG + chr5_2:42109178-42109197 Msa0770720:intron 50.0%
AGGGAGACGAGTATACCAGA+GGG - chr5_2:42109196-42109215 None:intergenic 50.0%
GGGGAGGATTTGGAAATGTG+AGG - chr5_2:42109219-42109238 None:intergenic 50.0%
AACAGGCTTGAAAGCCATCG+AGG - chr5_2:42109317-42109336 None:intergenic 50.0%
GAAGCAATAGCGAAGAGAGG+AGG - chr5_2:42109630-42109649 None:intergenic 50.0%
GGAACCATTCACACAACTCC+AGG + chr5_2:42109654-42109673 Msa0770720:CDS 50.0%
! CAAAGTGCATGTGCTTTGGG+AGG + chr5_2:42109781-42109800 Msa0770720:CDS 50.0%
TGCAACCAGAAAAGTAGCCC+TGG - chr5_2:42110550-42110569 None:intergenic 50.0%
GCCTATCACACCAAATACCG+GGG + chr5_2:42110603-42110622 Msa0770720:CDS 50.0%
!! TCCCCGGTATTTGGTGTGAT+AGG - chr5_2:42110607-42110626 None:intergenic 50.0%
ATGTCCGGTCATTCCAATCG+TGG - chr5_2:42110793-42110812 None:intergenic 50.0%
CGGACATGCATGATTGACCT+TGG + chr5_2:42110806-42110825 Msa0770720:exon 50.0%
CCGGGTTAAGGATTGCGATG+TGG + chr5_2:42106210-42106229 Msa0770720:intron 55.0%
!! GAGGGTGTGGGTGTTGAAGT+TGG + chr5_2:42106261-42106280 Msa0770720:intron 55.0%
! GTCCCACATCGTTCAGGTTC+CGG + chr5_2:42106305-42106324 Msa0770720:intron 55.0%
! TCCCACATCGTTCAGGTTCC+GGG + chr5_2:42106306-42106325 Msa0770720:intron 55.0%
TCCCGGAACCTGAACGATGT+GGG - chr5_2:42106310-42106329 None:intergenic 55.0%
! ATCGTTCAGGTTCCGGGAGT+CGG + chr5_2:42106312-42106331 Msa0770720:intron 55.0%
GCAATCCTTAACCCGACTCC+CGG - chr5_2:42106327-42106346 None:intergenic 55.0%
CAACAGGAACCTGAGCGATG+TGG - chr5_2:42106418-42106437 None:intergenic 55.0%
! TTTGGAAGGAGCGTGGGTGA+TGG + chr5_2:42106601-42106620 Msa0770720:intron 55.0%
! TTGGAAGGAGCGTGGGTGAT+GGG + chr5_2:42106602-42106621 Msa0770720:intron 55.0%
GGAATGTGAGGTGAGATGGG+GGG + chr5_2:42107536-42107555 Msa0770720:intron 55.0%
CCCTTTGCATGCGCAAGTGA+AGG + chr5_2:42107821-42107840 Msa0770720:intron 55.0%
GCCTTCACTTGCGCATGCAA+AGG - chr5_2:42107825-42107844 None:intergenic 55.0%
! ACCGCGCCGCGTCAATTTTT+CGG - chr5_2:42107955-42107974 None:intergenic 55.0%
! GCTGGCGCTTTTACATGACG+CGG + chr5_2:42107988-42108007 Msa0770720:intron 55.0%
GGTCAACGCGGGCAAAAAAC+GGG - chr5_2:42108278-42108297 None:intergenic 55.0%
GGGTCAACGCGGGCAAAAAA+CGG - chr5_2:42108279-42108298 None:intergenic 55.0%
GGTCAATGCGGGCAAAAAGC+GGG - chr5_2:42108299-42108318 None:intergenic 55.0%
GGGTCAATGCGGGCAAAAAG+CGG - chr5_2:42108300-42108319 None:intergenic 55.0%
GGCAAAAAGCGGGTCAATGC+GGG - chr5_2:42108310-42108329 None:intergenic 55.0%
GGGCAAAAAGCGGGTCAATG+CGG - chr5_2:42108311-42108330 None:intergenic 55.0%
GGTCAACACGGGCAAAAAGC+GGG - chr5_2:42108320-42108339 None:intergenic 55.0%
GGGTCAACACGGGCAAAAAG+CGG - chr5_2:42108321-42108340 None:intergenic 55.0%
AGTCGCGCGTTAGGCAAAAG+CGG - chr5_2:42108353-42108372 None:intergenic 55.0%
! CTTTTGCCTAACGCGCGACT+CGG + chr5_2:42108353-42108372 Msa0770720:intron 55.0%
ATGGTACAACATACCGGGCC+TGG + chr5_2:42108465-42108484 Msa0770720:intron 55.0%
GAGGGAGACGAGTATACCAG+AGG - chr5_2:42109197-42109216 None:intergenic 55.0%
GATGGCATAGGGAATTGGGG+AGG - chr5_2:42109235-42109254 None:intergenic 55.0%
TTTGGGAGGCCTTTAACCCC+TGG + chr5_2:42109795-42109814 Msa0770720:CDS 55.0%
TTGGGAGGCCTTTAACCCCT+GGG + chr5_2:42109796-42109815 Msa0770720:CDS 55.0%
CGATTTCCCCCAGGGGTTAA+AGG - chr5_2:42109807-42109826 None:intergenic 55.0%
ACCAAGCTCGATTTCCCCCA+GGG - chr5_2:42109815-42109834 None:intergenic 55.0%
AAGGCCCACGCTAGACGTGA+GGG + chr5_2:42106243-42106262 Msa0770720:intron 60.0%
CACACCCTCACGTCTAGCGT+GGG - chr5_2:42106250-42106269 None:intergenic 60.0%
! CACGCTAGACGTGAGGGTGT+GGG + chr5_2:42106249-42106268 Msa0770720:intron 60.0%
CTCCCGGAACCTGAACGATG+TGG - chr5_2:42106311-42106330 None:intergenic 60.0%
! TCGTTCAGGTTCCGGGAGTC+GGG + chr5_2:42106313-42106332 Msa0770720:intron 60.0%
AGGTTCCGGGAGTCGGGTTA+AGG + chr5_2:42106319-42106338 Msa0770720:intron 60.0%
GCGATGTGGGAATTGGACCC+AGG + chr5_2:42106345-42106364 Msa0770720:intron 60.0%
! TGGAAGGAGCGTGGGTGATG+GGG + chr5_2:42106603-42106622 Msa0770720:intron 60.0%
!!! CGCCGCGTCAATTTTTCGGG+TGG - chr5_2:42107951-42107970 None:intergenic 60.0%
! CCGCGCCGCGTCAATTTTTC+GGG - chr5_2:42107954-42107973 None:intergenic 60.0%
CCCGAAAAATTGACGCGGCG+CGG + chr5_2:42107951-42107970 Msa0770720:intron 60.0%
AATTGACGCGGCGCGGTAAG+CGG + chr5_2:42107958-42107977 Msa0770720:intron 60.0%
GGCAAAAAGCGGGTCAACGC+GGG - chr5_2:42108289-42108308 None:intergenic 60.0%
GGGCAAAAAGCGGGTCAACG+CGG - chr5_2:42108290-42108309 None:intergenic 60.0%
GTCTGTCGGGGTAGGGAATC+AGG - chr5_2:42109127-42109146 None:intergenic 60.0%
ATGGAGGGTCTGTCGGGGTA+GGG - chr5_2:42109134-42109153 None:intergenic 60.0%
AATGGAGGGTCTGTCGGGGT+AGG - chr5_2:42109135-42109154 None:intergenic 60.0%
TGGGAGGCCTTTAACCCCTG+GGG + chr5_2:42109797-42109816 Msa0770720:CDS 60.0%
CCAAGCTCGATTTCCCCCAG+GGG - chr5_2:42109814-42109833 None:intergenic 60.0%
GACCAAGCTCGATTTCCCCC+AGG - chr5_2:42109816-42109835 None:intergenic 60.0%
CTCACGTCTAGCGTGGGCCT+TGG - chr5_2:42106244-42106263 None:intergenic 65.0%
CAAGGCCCACGCTAGACGTG+AGG + chr5_2:42106242-42106261 Msa0770720:intron 65.0%
CCACACCCTCACGTCTAGCG+TGG - chr5_2:42106251-42106270 None:intergenic 65.0%
CCACGCTAGACGTGAGGGTG+TGG + chr5_2:42106248-42106267 Msa0770720:intron 65.0%
ATTGGACCCAGGCCCACGCT+AGG + chr5_2:42106356-42106375 Msa0770720:intron 65.0%
GTCAAAGCGGAAACGCGGCG+CGG + chr5_2:42107920-42107939 Msa0770720:intron 65.0%
ATTGACGCGGCGCGGTAAGC+GGG + chr5_2:42107959-42107978 Msa0770720:intron 65.0%
GGGAGGCCTTTAACCCCTGG+GGG + chr5_2:42109798-42109817 Msa0770720:CDS 65.0%
CCCCTGGGGGAAATCGAGCT+TGG + chr5_2:42109811-42109830 Msa0770720:CDS 65.0%
CTCACGCCTAGCGTGGGCCT+GGG - chr5_2:42106365-42106384 None:intergenic 70.0%
CCCACGCTCACGCCTAGCGT+GGG - chr5_2:42106371-42106390 None:intergenic 70.0%
CCCACGCTAGGCGTGAGCGT+GGG + chr5_2:42106368-42106387 Msa0770720:intron 70.0%
ACCCACGCTCACGCCTAGCG+TGG - chr5_2:42106372-42106391 None:intergenic 70.0%
ACGCGACCGAGTCGCGCGTT+AGG - chr5_2:42108362-42108381 None:intergenic 70.0%
CGGTCGCGTTCTGACGCGCT+AGG + chr5_2:42108373-42108392 Msa0770720:intron 70.0%
GGTCTAACGCGGCGCGATCG+CGG - chr5_2:42108419-42108438 None:intergenic 70.0%
GCTCACGCCTAGCGTGGGCC+TGG - chr5_2:42106366-42106385 None:intergenic 75.0%
GCCCACGCTAGGCGTGAGCG+TGG + chr5_2:42106367-42106386 Msa0770720:intron 75.0%
! GCGGTAAGCGGGCGCGACGC+TGG + chr5_2:42107970-42107989 Msa0770720:intron 80.0%
! AACGCGGCGCGATCGCGGCG+CGG - chr5_2:42108414-42108433 None:intergenic 80.0%
! GGCGCGATCGCGGCGCGGAG+CGG - chr5_2:42108409-42108428 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 42105501 42111157 42105501 ID=Msa0770720;Name=Msa0770720
chr5_2 mRNA 42105501 42111157 42105501 ID=Msa0770720-mRNA-1;Parent=Msa0770720;Name=Msa0770720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=166|0.33|0.75|0.75|1|1|4|339|207
chr5_2 exon 42105501 42105768 42105501 ID=Msa0770720-mRNA-1:exon:13162;Parent=Msa0770720-mRNA-1
chr5_2 exon 42105860 42105907 42105860 ID=Msa0770720-mRNA-1:exon:13163;Parent=Msa0770720-mRNA-1
chr5_2 exon 42109654 42109859 42109654 ID=Msa0770720-mRNA-1:exon:13164;Parent=Msa0770720-mRNA-1
chr5_2 exon 42110551 42111157 42110551 ID=Msa0770720-mRNA-1:exon:13165;Parent=Msa0770720-mRNA-1
chr5_2 five_prime_UTR 42105501 42105666 42105501 ID=Msa0770720-mRNA-1:five_prime_utr;Parent=Msa0770720-mRNA-1
chr5_2 CDS 42105667 42105768 42105667 ID=Msa0770720-mRNA-1:cds;Parent=Msa0770720-mRNA-1
chr5_2 CDS 42105860 42105907 42105860 ID=Msa0770720-mRNA-1:cds;Parent=Msa0770720-mRNA-1
chr5_2 CDS 42109654 42109859 42109654 ID=Msa0770720-mRNA-1:cds;Parent=Msa0770720-mRNA-1
chr5_2 CDS 42110551 42110818 42110551 ID=Msa0770720-mRNA-1:cds;Parent=Msa0770720-mRNA-1
chr5_2 three_prime_UTR 42110819 42111157 42110819 ID=Msa0770720-mRNA-1:three_prime_utr;Parent=Msa0770720-mRNA-1
Gene Sequence

>Msa0770720

ATGGCAGAGGGAAGAGGTTCTACTCTTGTGCATCTTTTAGTCATTGTTTGTTGCTTAGTTGCATTTGGTTTTGCCGTTGCTGCTGAGAGAAGAAGAAGTGTTGATGGTTTATTAGGTTTTGTTAACTTTGTTCTTGAAATGATGATACTGGGAACCATTCACACAACTCCAGGAACAAATGAAACATATTGCGTTTACAGTTCAGATGTTGCAACTGGTTATGGAGTGGGTGCTTTCCTATTTCTTCTTTCAGGTGAATCACTGCTTATGGGTGTGACAAAGTGCATGTGCTTTGGGAGGCCTTTAACCCCTGGGGGAAATCGAGCTTGGTCCATTATATATTTTCTTTCTTCTTGGGCTACTTTTCTGGTTGCAGAATCATGCTTAATAGCTGGTGCAAAAAAGAATGCCTATCACACCAAATACCGGGGAATTATTTATGCTCAGAACTTCTCCTGTGAAAGTTTGAGGAAAGGCATCTTCATTACCGGAGCAATTTTCATCGTTGTAACGATGGTTCTTAACGTATACTACTACATGTACTTCACAAAGGCAACCACTACTCCACTTTCTCAGAAGACCAATCGGGTTAGTTCCACGATTGGAATGACCGGACATGCATGA

Protein sequence

>Msa0770720

MAEGRGSTLVHLLVIVCCLVAFGFAVAAERRRSVDGLLGFVNFVLEMMILGTIHTTPGTNETYCVYSSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWATFLVAESCLIAGAKKNAYHTKYRGIIYAQNFSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTTPLSQKTNRVSSTIGMTGHA*