AlfalfaGEDB | Msa0808170

M. sativa cultivar zhongmu-4 / Msa0808170

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808170	AES97503.1	89.529	191	20	0	6	196	42	232	3.16e-119	347

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808170	G7JZF8	89.529	191	20	0	6	196	42	232	1.51e-119	347

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0808160	Msa0808170	0.952395	2.655418e-110	-8.615850e-47
Msa0808170	Msa0818030	0.810048	1.398944e-50	-8.615850e-47
Msa0808170	Msa1238130	0.801112	1.049697e-48	-8.615850e-47
Msa0808170	Msa1287700	0.801212	1.001754e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0808170	MtrunA17_Chr5g0423041	74.672	229	20	1	6	196	42	270	2.14e-115	329
Msa0808170	MtrunA17_Chr5g0423061	50.467	214	74	8	6	193	39	246	3.02e-50	171

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 40 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCATGTCTACTAAACC+AGG	0.587810	5_3:-31989347	Msa0808170:CDS
AAAGTTGATTTAGAGTCTTG+TGG	0.561215	5_3:-31989388	Msa0808170:CDS
AAATGACGATCATTTCTCTT+AGG	0.261854	5_3:+31989164	None:intergenic
AACTGAAATTTAAAGTTTCC+TGG	0.308434	5_3:+31989329	None:intergenic
AACTTCTATGTATGCAATCA+TGG	0.414576	5_3:-31989583	Msa0808170:CDS
AAGCTTCCTGTGGATATCTT+GGG	0.454584	5_3:-31989824	None:intergenic
AAGTTTGGCGTATTCTGAAT+TGG	0.406948	5_3:+31989622	None:intergenic
AATAATTCAGTTATCATATA+TGG	0.311793	5_3:-31989667	Msa0808170:CDS
ACACAATTGAAAGTTTCAAA+TGG	0.468211	5_3:+31989436	None:intergenic
ACATTCTATTCTATCAACGG+TGG	0.712385	5_3:+31989783	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTATCAATTTCATAGGTT+TGG	+	chr5_3:31989252-31989271	None:intergenic	30.0%
ACTGATGCTATCAATTTCAT+AGG	+	chr5_3:31989257-31989276	None:intergenic	30.0%
ATAGTGTTAATGCTGAAGTT+TGG	+	chr5_3:31989346-31989365	None:intergenic	30.0%
AACTTCTATGTATGCAATCA+TGG	-	chr5_3:31989367-31989386	Msa0808170:CDS	30.0%
AATGGAAAAATAGGGAACAT+GGG	+	chr5_3:31989478-31989497	None:intergenic	30.0%
AACATGCCAATGGAAAAATA+GGG	+	chr5_3:31989486-31989505	None:intergenic	30.0%
AAACATGCCAATGGAAAAAT+AGG	+	chr5_3:31989487-31989506	None:intergenic	30.0%
TGAAAGTTTCAAATGGAACT+GGG	+	chr5_3:31989510-31989529	None:intergenic	30.0%
TTGAAAGTTTCAAATGGAAC+TGG	+	chr5_3:31989511-31989530	None:intergenic	30.0%
AAATGACGATCATTTCTCTT+AGG	+	chr5_3:31989789-31989808	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	31989133	31989839	31989133	ID=Msa0808170;Name=Msa0808170
chr5_3	mRNA	31989133	31989839	31989133	ID=Msa0808170-mRNA-1;Parent=Msa0808170;Name=Msa0808170-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|2\|0\|196
chr5_3	exon	31989320	31989839	31989320	ID=Msa0808170-mRNA-1:exon:10565;Parent=Msa0808170-mRNA-1
chr5_3	exon	31989133	31989203	31989133	ID=Msa0808170-mRNA-1:exon:10564;Parent=Msa0808170-mRNA-1
chr5_3	CDS	31989320	31989839	31989320	ID=Msa0808170-mRNA-1:cds;Parent=Msa0808170-mRNA-1
chr5_3	CDS	31989133	31989203	31989133	ID=Msa0808170-mRNA-1:cds;Parent=Msa0808170-mRNA-1

Gene Sequence

>Msa0808170

CTGTGGATATCTTGGGAAATCTTCCCCCCTTTTACCACCGTTGATAGAATAGAATGTGGCTCTTACATAAGTGGTTGTGACAAAAACAGTTCAGTGAAAAAGATCAAGCTGATAAACCAAACCTATGAAATTGATAGCATCAGTTATATGAATAATTCAGTTATCATATATGGCCTAAATTTCCCTGAATTAGAGCCAATTCAGAATACGCCAAACTTCAGCATTAACACTATTAACTTCTATGTATGCAATCATGGCTATGACAACAGCCATGATAACAAGTTCAAATATAAAAACTGTGCTGATTATGATATCTACTTTACTTCTACACCTGATAAACCTCCCATGTTCCCTATTTTTCCATTGGCATGTTTCCCAGTTCCATTTGAAACTTTCAATTGTGTAGATATAATTTCATTACTCGAAATTAAAGTTGATTTAGAGTCTTGTGGAGGATGTTATCTTGCAGGAAAGTCATGTCTACTAAACCAGGAAACTTTAAATTTCAGTTGTGGCCCAGTACTGAAACCTCCGATTCCTAAGAGAAATGATCGTCATTTGAAGGATGCCGTAATAGGCACTCTATTGTAA

Protein sequence

>Msa0808170

LWISWEIFPPFTTVDRIECGSYISGCDKNSSVKKIKLINQTYEIDSISYMNNSVIIYGLNFPELEPIQNTPNFSINTINFYVCNHGYDNSHDNKFKYKNCADYDIYFTSTPDKPPMFPIFPLACFPVPFETFNCVDIISLLEIKVDLESCGGCYLAGKSCLLNQETLNFSCGPVLKPPIPKRNDRHLKDAVIGTLL*