Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287700 | KEH19620.1 | 89.583 | 48 | 5 | 0 | 1 | 48 | 745 | 792 | 3.55e-20 | 94.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287700 | A0A072U1E3 | 89.583 | 48 | 5 | 0 | 1 | 48 | 745 | 792 | 1.70e-20 | 94.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014790 | Msa1287700 | 0.822848 | 1.901329e-53 | -8.615850e-47 |
| Msa0024160 | Msa1287700 | 0.818385 | 2.014807e-52 | -8.615850e-47 |
| Msa0059510 | Msa1287700 | 0.801234 | 9.913018e-49 | -8.615850e-47 |
| Msa0059530 | Msa1287700 | 0.805647 | 1.206465e-49 | -8.615850e-47 |
| Msa0067580 | Msa1287700 | 0.807150 | 5.816594e-50 | -8.615850e-47 |
| Msa0108950 | Msa1287700 | 0.812151 | 4.898378e-51 | -8.615850e-47 |
| Msa0617370 | Msa1287700 | 0.810993 | 8.741478e-51 | -8.615850e-47 |
| Msa0629930 | Msa1287700 | 0.822592 | 2.181243e-53 | -8.615850e-47 |
| Msa0629940 | Msa1287700 | 0.803464 | 3.443133e-49 | -8.615850e-47 |
| Msa0641020 | Msa1287700 | 0.807895 | 4.041933e-50 | -8.615850e-47 |
| Msa0669990 | Msa1287700 | 0.809567 | 1.775277e-50 | -8.615850e-47 |
| Msa0678240 | Msa1287700 | 0.842468 | 2.538740e-58 | -8.615850e-47 |
| Msa0688550 | Msa1287700 | 0.819498 | 1.125098e-52 | -8.615850e-47 |
| Msa0701770 | Msa1287700 | 0.810396 | 1.177142e-50 | -8.615850e-47 |
| Msa0716740 | Msa1287700 | -0.802214 | 6.238235e-49 | -8.615850e-47 |
| Msa0752580 | Msa1287700 | 0.826070 | 3.318537e-54 | -8.615850e-47 |
| Msa0754500 | Msa1287700 | 0.817583 | 3.058531e-52 | -8.615850e-47 |
| Msa0756410 | Msa1287700 | 0.819999 | 8.648121e-53 | -8.615850e-47 |
| Msa0756480 | Msa1287700 | 0.810822 | 9.519827e-51 | -8.615850e-47 |
| Msa0778580 | Msa1287700 | 0.801070 | 1.070907e-48 | -8.615850e-47 |
| Msa0808160 | Msa1287700 | 0.821929 | 3.109203e-53 | -8.615850e-47 |
| Msa0808170 | Msa1287700 | 0.801212 | 1.001754e-48 | -8.615850e-47 |
| Msa0811000 | Msa1287700 | 0.806524 | 7.888107e-50 | -8.615850e-47 |
| Msa0815320 | Msa1287700 | 0.800866 | 1.178990e-48 | -8.615850e-47 |
| Msa0817860 | Msa1287700 | 0.809474 | 1.858709e-50 | -8.615850e-47 |
| Msa0818010 | Msa1287700 | 0.813654 | 2.294349e-51 | -8.615850e-47 |
| Msa0818030 | Msa1287700 | 0.818462 | 1.935850e-52 | -8.615850e-47 |
| Msa0830900 | Msa1287700 | 0.829577 | 4.762851e-55 | -8.615850e-47 |
| Msa0835510 | Msa1287700 | 0.807951 | 3.932094e-50 | -8.615850e-47 |
| Msa0153440 | Msa1287700 | 0.811234 | 7.752310e-51 | -8.615850e-47 |
| Msa0164660 | Msa1287700 | 0.805166 | 1.522261e-49 | -8.615850e-47 |
| Msa0193760 | Msa1287700 | 0.805890 | 1.072682e-49 | -8.615850e-47 |
| Msa0211680 | Msa1287700 | 0.804727 | 1.880087e-49 | -8.615850e-47 |
| Msa0212210 | Msa1287700 | 0.815203 | 1.042617e-51 | -8.615850e-47 |
| Msa0232860 | Msa1287700 | 0.806009 | 1.012583e-49 | -8.615850e-47 |
| Msa0235550 | Msa1287700 | 0.800904 | 1.157929e-48 | -8.615850e-47 |
| Msa1232130 | Msa1287700 | 0.804834 | 1.785921e-49 | -8.615850e-47 |
| Msa1238130 | Msa1287700 | 0.845463 | 3.997524e-59 | -8.615850e-47 |
| Msa1254950 | Msa1287700 | 0.802972 | 4.353472e-49 | -8.615850e-47 |
| Msa1272130 | Msa1287700 | 0.815563 | 8.673042e-52 | -8.615850e-47 |
| Msa1279850 | Msa1287700 | 0.800079 | 1.705345e-48 | -8.615850e-47 |
| Msa1279860 | Msa1287700 | 0.876327 | 1.525345e-68 | -8.615850e-47 |
| Msa1279870 | Msa1287700 | 0.864297 | 1.345309e-64 | -8.615850e-47 |
| Msa1287160 | Msa1287700 | 0.813628 | 2.324402e-51 | -8.615850e-47 |
| Msa1287560 | Msa1287700 | 0.851122 | 1.090326e-60 | -8.615850e-47 |
| Msa1287690 | Msa1287700 | 0.870427 | 1.471796e-66 | -8.615850e-47 |
| Msa1287700 | Msa1287710 | 0.871314 | 7.513073e-67 | -8.615850e-47 |
| Msa1287700 | Msa1288000 | 0.820780 | 5.725344e-53 | -8.615850e-47 |
| Msa1287700 | Msa1312680 | 0.804191 | 2.431730e-49 | -8.615850e-47 |
| Msa1287700 | Msa1457020 | 0.803987 | 2.681999e-49 | -8.615850e-47 |
| Msa1287700 | Msa1464100 | 0.829932 | 3.902514e-55 | -8.615850e-47 |
| Msa0389030 | Msa1287700 | 0.826797 | 2.227091e-54 | -8.615850e-47 |
| Msa0389050 | Msa1287700 | 0.827564 | 1.459567e-54 | -8.615850e-47 |
| Msa0389060 | Msa1287700 | 0.803871 | 2.834359e-49 | -8.615850e-47 |
| Msa0414070 | Msa1287700 | 0.802253 | 6.125804e-49 | -8.615850e-47 |
| Msa0423600 | Msa1287700 | 0.800847 | 1.189243e-48 | -8.615850e-47 |
| Msa0439700 | Msa1287700 | 0.809574 | 1.769551e-50 | -8.615850e-47 |
| Msa0452480 | Msa1287700 | 0.827176 | 1.808203e-54 | -8.615850e-47 |
| Msa0481320 | Msa1287700 | 0.835534 | 1.587089e-56 | -8.615850e-47 |
| Msa0984720 | Msa1287700 | 0.826025 | 3.401811e-54 | -8.615850e-47 |
| Msa0988500 | Msa1287700 | 0.804706 | 1.899643e-49 | -8.615850e-47 |
| Msa1002300 | Msa1287700 | 0.801539 | 8.582957e-49 | -8.615850e-47 |
| Msa1006250 | Msa1287700 | 0.805715 | 1.167504e-49 | -8.615850e-47 |
| Msa1008340 | Msa1287700 | 0.811922 | 5.494842e-51 | -8.615850e-47 |
| Msa1048610 | Msa1287700 | 0.822970 | 1.781648e-53 | -8.615850e-47 |
| Msa1049950 | Msa1287700 | 0.834091 | 3.661765e-56 | -8.615850e-47 |
| Msa1050480 | Msa1287700 | 0.841749 | 3.934902e-58 | -8.615850e-47 |
| Msa1050490 | Msa1287700 | 0.809878 | 1.521746e-50 | -8.615850e-47 |
| Msa1050500 | Msa1287700 | 0.817689 | 2.895425e-52 | -8.615850e-47 |
| Msa1072350 | Msa1287700 | 0.812882 | 3.390073e-51 | -8.615850e-47 |
| Msa1081700 | Msa1287700 | 0.821358 | 4.211989e-53 | -8.615850e-47 |
| Msa1089680 | Msa1287700 | 0.813145 | 2.968192e-51 | -8.615850e-47 |
| Msa0273570 | Msa1287700 | 0.817548 | 3.115109e-52 | -8.615850e-47 |
| Msa0274520 | Msa1287700 | 0.814745 | 1.317245e-51 | -8.615850e-47 |
| Msa0314160 | Msa1287700 | 0.824856 | 6.435720e-54 | -8.615850e-47 |
| Msa0329550 | Msa1287700 | 0.829470 | 5.057241e-55 | -8.615850e-47 |
| Msa0351230 | Msa1287700 | 0.827441 | 1.561696e-54 | -8.615850e-47 |
| Msa0363980 | Msa1287700 | 0.800008 | 1.763099e-48 | -8.615850e-47 |
| Msa1135660 | Msa1287700 | 0.850670 | 1.461696e-60 | -8.615850e-47 |
| Msa1139240 | Msa1287700 | 0.820968 | 5.181148e-53 | -8.615850e-47 |
| Msa1187060 | Msa1287700 | 0.806777 | 6.977529e-50 | -8.615850e-47 |
| Msa0499710 | Msa1287700 | 0.826133 | 3.205635e-54 | -8.615850e-47 |
| Msa0530930 | Msa1287700 | 0.804185 | 2.438359e-49 | -8.615850e-47 |
| Msa0533290 | Msa1287700 | 0.805055 | 1.605581e-49 | -8.615850e-47 |
| Msa0563140 | Msa1287700 | 0.812039 | 5.181451e-51 | -8.615850e-47 |
| Msa0592540 | Msa1287700 | 0.808123 | 3.614228e-50 | -8.615850e-47 |
| Msa0858360 | Msa1287700 | 0.817107 | 3.913753e-52 | -8.615850e-47 |
| Msa0862020 | Msa1287700 | 0.806154 | 9.439422e-50 | -8.615850e-47 |
| Msa0883230 | Msa1287700 | 0.812828 | 3.482564e-51 | -8.615850e-47 |
| Msa0883450 | Msa1287700 | 0.801787 | 7.635122e-49 | -8.615850e-47 |
| Msa0884930 | Msa1287700 | 0.801022 | 1.095207e-48 | -8.615850e-47 |
| Msa0885170 | Msa1287700 | 0.814247 | 1.697733e-51 | -8.615850e-47 |
| Msa0898370 | Msa1287700 | 0.812662 | 3.786512e-51 | -8.615850e-47 |
| Msa0902140 | Msa1287700 | 0.812832 | 3.476178e-51 | -8.615850e-47 |
| Msa0912500 | Msa1287700 | 0.804904 | 1.726798e-49 | -8.615850e-47 |
| Msa0950620 | Msa1287700 | 0.812710 | 3.697154e-51 | -8.615850e-47 |
| Msa0951720 | Msa1287700 | 0.810243 | 1.269625e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287700 | MtrunA17_Chr8g0361161 | 89.583 | 48 | 5 | 0 | 1 | 48 | 271 | 318 | 6.21e-24 | 92.4 |
| Msa1287700 | MtrunA17_Chr8g0361141 | 87.500 | 48 | 6 | 0 | 1 | 48 | 743 | 790 | 3.22e-23 | 91.7 |
| Msa1287700 | MtrunA17_Chr8g0360201 | 80.000 | 50 | 10 | 0 | 1 | 50 | 633 | 682 | 5.90e-23 | 90.9 |
| Msa1287700 | MtrunA17_Chr7g0236651 | 50.980 | 51 | 25 | 0 | 1 | 51 | 713 | 763 | 1.89e-11 | 58.2 |
| Msa1287700 | MtrunA17_Chr8g0357881 | 49.057 | 53 | 27 | 0 | 1 | 53 | 704 | 756 | 2.80e-11 | 57.8 |
| Msa1287700 | MtrunA17_Chr4g0042351 | 53.061 | 49 | 23 | 0 | 1 | 49 | 681 | 729 | 3.40e-11 | 57.4 |
| Msa1287700 | MtrunA17_Chr4g0042391 | 53.061 | 49 | 23 | 0 | 1 | 49 | 681 | 729 | 3.78e-11 | 57.4 |
| Msa1287700 | MtrunA17_Chr4g0042381 | 51.020 | 49 | 24 | 0 | 1 | 49 | 681 | 729 | 4.88e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 10 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATGGTTGGTCTATCTTC+TGG | 0.373322 | 8_3:+39044960 | None:intergenic |
| GGAGCTAATTGACTCAGAAT+TGG | 0.418914 | 8_3:-39045051 | Msa1287700:CDS |
| TCTCGGTACTAAATCTTTGT+TGG | 0.430925 | 8_3:+39045019 | None:intergenic |
| TCTGATGTTGTATCAATGTT+TGG | 0.453725 | 8_3:-39044939 | Msa1287700:intron |
| GTACCGAGATACGTGAATAT+AGG | 0.456261 | 8_3:-39045005 | Msa1287700:CDS |
| CCAGCATTTCAAAACATAAG+AGG | 0.460254 | 8_3:+39039348 | Msa1287690:CDS |
| ATAGAAGAAAACTCTGTGAA+TGG | 0.497212 | 8_3:+39039399 | Msa1287690:CDS |
| AGTCCTATATTCACGTATCT+CGG | 0.557179 | 8_3:+39045002 | None:intergenic |
| CATTGATACAACATCAGACA+TGG | 0.607136 | 8_3:+39044944 | None:intergenic |
| GATACAACATCAGACATGGT+TGG | 0.629347 | 8_3:+39044948 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTAATAATAATGATG+AGG | + | chr8_3:39041887-39041906 | None:intergenic | 10.0% |
| !! | ATGCATATATATTAATTGAA+TGG | + | chr8_3:39042550-39042569 | None:intergenic | 15.0% |
| !!! | CATATATCAAAATTTCATTT+TGG | - | chr8_3:39043651-39043670 | Msa1287700:intron | 15.0% |
| !! | AAAATAAATCTAACGAAAAT+CGG | - | chr8_3:39044626-39044645 | Msa1287700:intron | 15.0% |
| !!! | AATACAAAAGCTTTATTTAT+AGG | - | chr8_3:39044840-39044859 | Msa1287700:intron | 15.0% |
| !!! | ATACAAAAGCTTTATTTATA+GGG | - | chr8_3:39044841-39044860 | Msa1287700:intron | 15.0% |
| !! | TATATAATTCATAAACACTC+TGG | - | chr8_3:39041129-39041148 | Msa1287700:intron | 20.0% |
| !! | TGATACATTTGTATTTAGTT+TGG | + | chr8_3:39041159-39041178 | None:intergenic | 20.0% |
| !!! | ATATTCTGTTATTTGAGATT+TGG | + | chr8_3:39041183-39041202 | None:intergenic | 20.0% |
| !!! | GTTTATTTGACTTTGTATTT+TGG | + | chr8_3:39041216-39041235 | None:intergenic | 20.0% |
| !!! | GTTCTTGTTTAAATCTTTTA+TGG | + | chr8_3:39041419-39041438 | None:intergenic | 20.0% |
| !! | AAAGATTTAAACAAGAACAT+TGG | - | chr8_3:39041421-39041440 | Msa1287700:intron | 20.0% |
| !! | GTATATATACATATATGATG+TGG | + | chr8_3:39041850-39041869 | None:intergenic | 20.0% |
| !! | AACAAAAACATCATTATCAA+CGG | - | chr8_3:39042187-39042206 | Msa1287700:intron | 20.0% |
| !! | ACATGTTAAATGTTTATTGT+TGG | + | chr8_3:39042495-39042514 | None:intergenic | 20.0% |
| !!! | AGGAAATAACTTTGTTTAAA+GGG | + | chr8_3:39043088-39043107 | None:intergenic | 20.0% |
| !!! | AAGGAAATAACTTTGTTTAA+AGG | + | chr8_3:39043089-39043108 | None:intergenic | 20.0% |
| !!! | TTGAAGAAAAATGCATTTTT+AGG | - | chr8_3:39043176-39043195 | Msa1287700:intron | 20.0% |
| !!! | TGAAGAAAAATGCATTTTTA+GGG | - | chr8_3:39043177-39043196 | Msa1287700:intron | 20.0% |
| !!! | ATCATACTCATTTTTCAAAA+CGG | - | chr8_3:39043497-39043516 | Msa1287700:intron | 20.0% |
| !!! | ATTTTGATATATGAAGTTGT+TGG | + | chr8_3:39043644-39043663 | None:intergenic | 20.0% |
| !!! | TTTTCATGAAATTGATGAAT+TGG | + | chr8_3:39043994-39044013 | None:intergenic | 20.0% |
| !! | ATTCATCAATTTCATGAAAA+TGG | - | chr8_3:39043994-39044013 | Msa1287700:intron | 20.0% |
| !! | TTCATCAATTTCATGAAAAT+GGG | - | chr8_3:39043995-39044014 | Msa1287700:intron | 20.0% |
| !! | AAATAAATCTAACGAAAATC+GGG | - | chr8_3:39044627-39044646 | Msa1287700:intron | 20.0% |
| !! | ATCAAAGTAGATATATTGAT+AGG | - | chr8_3:39044791-39044810 | Msa1287700:intron | 20.0% |
| !!! | ATAAAGCTTTTGTATTTCTT+TGG | + | chr8_3:39044836-39044855 | None:intergenic | 20.0% |
| !! | TAGAATATTTCATCCTTTTC+TGG | + | chr8_3:39039971-39039990 | None:intergenic | 25.0% |
| ! | GATATCATCAATTAGAGTAA+AGG | + | chr8_3:39040103-39040122 | None:intergenic | 25.0% |
| ! | TTTACCGCTTAATAGAAATA+GGG | + | chr8_3:39041003-39041022 | None:intergenic | 25.0% |
| !! | TTTTACCGCTTAATAGAAAT+AGG | + | chr8_3:39041004-39041023 | None:intergenic | 25.0% |
| ! | ATGTATGAATTGTGGTTATT+CGG | + | chr8_3:39041071-39041090 | None:intergenic | 25.0% |
| ! | TACACTTATTGATATGAACT+TGG | + | chr8_3:39041545-39041564 | None:intergenic | 25.0% |
| !!! | ATGTTCTTTGATAATGATGA+TGG | + | chr8_3:39041825-39041844 | None:intergenic | 25.0% |
| ! | ATTGTTTGTGCTTATACATT+TGG | + | chr8_3:39041928-39041947 | None:intergenic | 25.0% |
| ! | TCATAATTGAATATGTGACT+TGG | + | chr8_3:39042071-39042090 | None:intergenic | 25.0% |
| ! | ATATGTTCACAACAATTCAA+CGG | - | chr8_3:39042315-39042334 | Msa1287700:intron | 25.0% |
| ! | ATACAATTCCTCATAATCAA+CGG | - | chr8_3:39042407-39042426 | Msa1287700:intron | 25.0% |
| ! | TGAGTTTATACAAGCTAATT+TGG | + | chr8_3:39042469-39042488 | None:intergenic | 25.0% |
| ! | ATTATATATATGTCAAGTGG+TGG | + | chr8_3:39042586-39042605 | None:intergenic | 25.0% |
| ! | GTGATTATATATATGTCAAG+TGG | + | chr8_3:39042589-39042608 | None:intergenic | 25.0% |
| ! | GATTGAATAGTGAATATTGT+TGG | + | chr8_3:39042611-39042630 | None:intergenic | 25.0% |
| !!! | CAACTATATGTTGATTTATG+TGG | + | chr8_3:39042672-39042691 | None:intergenic | 25.0% |
| ! | ATTCCTTACAATCCAAATAA+AGG | - | chr8_3:39042707-39042726 | Msa1287700:intron | 25.0% |
| ! | GTTGTATTTGTTCCTTTATT+TGG | + | chr8_3:39042722-39042741 | None:intergenic | 25.0% |
| ! | ATTATGAGATGATGTATGAA+TGG | + | chr8_3:39042780-39042799 | None:intergenic | 25.0% |
| ! | TCATATCAATCTAATCATAG+AGG | - | chr8_3:39042799-39042818 | Msa1287700:intron | 25.0% |
| ! | CATATCAATCTAATCATAGA+GGG | - | chr8_3:39042800-39042819 | Msa1287700:intron | 25.0% |
| ! | TGATTGAAAATGATCATTGA+AGG | + | chr8_3:39042841-39042860 | None:intergenic | 25.0% |
| ! | AGATTACATAAGCAATTCAT+CGG | - | chr8_3:39042976-39042995 | Msa1287700:intron | 25.0% |
| !! | GGAAATAACTTTGTTTAAAG+GGG | + | chr8_3:39043087-39043106 | None:intergenic | 25.0% |
| ! | TCAGAAACACTAAAATTTCT+GGG | - | chr8_3:39043260-39043279 | Msa1287700:intron | 25.0% |
| !!! | AGGTTTTGGAAAATGATTTT+GGG | + | chr8_3:39043474-39043493 | None:intergenic | 25.0% |
| ! | GTTGAATTTGTATGTCAAAA+TGG | + | chr8_3:39043892-39043911 | None:intergenic | 25.0% |
| ! | TCACTAACACAAGTTTATAA+AGG | - | chr8_3:39044248-39044267 | Msa1287700:intron | 25.0% |
| ! | TTTATAAAGGCTCACTTAAT+GGG | - | chr8_3:39044261-39044280 | Msa1287700:intron | 25.0% |
| !! | TTTGAGGTTGAATTAGAAAT+GGG | + | chr8_3:39044315-39044334 | None:intergenic | 25.0% |
| !!! | TTTTGAGGTTGAATTAGAAA+TGG | + | chr8_3:39044316-39044335 | None:intergenic | 25.0% |
| !!! | GGTTTTATTTTACTAAGTGT+TGG | + | chr8_3:39044414-39044433 | None:intergenic | 25.0% |
| !!! | TTATTTTTAGTGCTTAGTGA+GGG | + | chr8_3:39044435-39044454 | None:intergenic | 25.0% |
| ! | TAAGCACTAAAAATAACCTT+CGG | - | chr8_3:39044439-39044458 | Msa1287700:intron | 25.0% |
| !! | AATTTTGTAATTTTTGCCGA+AGG | + | chr8_3:39044458-39044477 | None:intergenic | 25.0% |
| !!! | TTTTAGTCATTTTGGACTTA+GGG | + | chr8_3:39044509-39044528 | None:intergenic | 25.0% |
| !!! | ATTTTAGTCATTTTGGACTT+AGG | + | chr8_3:39044510-39044529 | None:intergenic | 25.0% |
| !!! | GAAGGATATTTTAGTCATTT+TGG | + | chr8_3:39044517-39044536 | None:intergenic | 25.0% |
| !!! | ATCAAAACTCGTTTTTGTAT+AGG | - | chr8_3:39044762-39044781 | Msa1287700:intron | 25.0% |
| ! | TTGAATAGTAAAATCTGTGA+AGG | + | chr8_3:39044928-39044947 | None:intergenic | 25.0% |
| TCTGATGTTGTATCAATGTT+TGG | - | chr8_3:39039470-39039489 | Msa1287700:intron | 30.0% | |
| TTGAAGTTAGAAGCTTTCTT+GGG | + | chr8_3:39039702-39039721 | None:intergenic | 30.0% | |
| ! | TTTGAAGTTAGAAGCTTTCT+TGG | + | chr8_3:39039703-39039722 | None:intergenic | 30.0% |
| CTAACTTCAAAAACAGACTT+AGG | - | chr8_3:39039712-39039731 | Msa1287700:intron | 30.0% | |
| ! | GGTGTTCATAGATGATATTT+TGG | + | chr8_3:39039935-39039954 | None:intergenic | 30.0% |
| ATCATCAATTAGAGTAAAGG+CGG | + | chr8_3:39040100-39040119 | None:intergenic | 30.0% | |
| !! | TGTTCAGTAAGATTGATTTG+AGG | + | chr8_3:39040130-39040149 | None:intergenic | 30.0% |
| ! | TGTATTGTTGGTTAAGAAGA+AGG | + | chr8_3:39040267-39040286 | None:intergenic | 30.0% |
| TTCTTCTTAACCAACAATAC+AGG | - | chr8_3:39040266-39040285 | Msa1287700:intron | 30.0% | |
| AGTTGAGTTTGCAATTGATT+TGG | + | chr8_3:39040423-39040442 | None:intergenic | 30.0% | |
| CTTAAAAAACGTTACACTCT+TGG | - | chr8_3:39040637-39040656 | Msa1287700:intron | 30.0% | |
| !! | AACACCCTATTTCTATTAAG+CGG | - | chr8_3:39040996-39041015 | Msa1287700:intron | 30.0% |
| ATGATATGGAATGGTTTGAA+TGG | + | chr8_3:39041518-39041537 | None:intergenic | 30.0% | |
| ATGAACTTGGAATGATGATA+TGG | + | chr8_3:39041532-39041551 | None:intergenic | 30.0% | |
| TAGCTTGAAATGTAAGTGAT+GGG | + | chr8_3:39041636-39041655 | None:intergenic | 30.0% | |
| ATAGCTTGAAATGTAAGTGA+TGG | + | chr8_3:39041637-39041656 | None:intergenic | 30.0% | |
| !! | TTTGTTGATGACTTGATTAG+AGG | + | chr8_3:39041694-39041713 | None:intergenic | 30.0% |
| TTTGGTGAATCAATTGATGA+TGG | + | chr8_3:39041910-39041929 | None:intergenic | 30.0% | |
| TATGTACATTGGTGAATTTG+TGG | + | chr8_3:39041993-39042012 | None:intergenic | 30.0% | |
| AATGTTGTGATTATGTGGAT+TGG | + | chr8_3:39042020-39042039 | None:intergenic | 30.0% | |
| ! | ATTTGTGTGTTGGTGAAATT+TGG | + | chr8_3:39042045-39042064 | None:intergenic | 30.0% |
| !! | GATGTTTTTGTTGCATCATA+AGG | + | chr8_3:39042179-39042198 | None:intergenic | 30.0% |
| TTATCAACGGCTATAATCAA+CGG | - | chr8_3:39042200-39042219 | Msa1287700:intron | 30.0% | |
| AATTGTTGTGAACATATGCA+TGG | + | chr8_3:39042312-39042331 | None:intergenic | 30.0% | |
| AATTCAACGGCTATAATCAA+CGG | - | chr8_3:39042328-39042347 | Msa1287700:intron | 30.0% | |
| AATCAACGGCTATAAATCAA+CGG | - | chr8_3:39042342-39042361 | Msa1287700:intron | 30.0% | |
| TTGGATTGTAAGGAATTATG+TGG | + | chr8_3:39042703-39042722 | None:intergenic | 30.0% | |
| ! | GTTCCTTTATTTGGATTGTA+AGG | + | chr8_3:39042713-39042732 | None:intergenic | 30.0% |
| ATGTGACTTATGAGAATACA+TGG | + | chr8_3:39042943-39042962 | None:intergenic | 30.0% | |
| TATTGAGTTCTTATGTTGCT+TGG | + | chr8_3:39043062-39043081 | None:intergenic | 30.0% | |
| AAGCAACATAAGAACTCAAT+AGG | - | chr8_3:39043061-39043080 | Msa1287700:intron | 30.0% | |
| !! | AATTTTAGTGTTTCTGACTC+TGG | + | chr8_3:39043257-39043276 | None:intergenic | 30.0% |
| GTCAGAAACACTAAAATTTC+TGG | - | chr8_3:39043259-39043278 | Msa1287700:intron | 30.0% | |
| TTATGATAGAGCTAAGTGTT+AGG | + | chr8_3:39043423-39043442 | None:intergenic | 30.0% | |
| !! | TTTGGAAAATGATTTTGGGA+TGG | + | chr8_3:39043470-39043489 | None:intergenic | 30.0% |
| !!! | GAGGTTTTGGAAAATGATTT+TGG | + | chr8_3:39043475-39043494 | None:intergenic | 30.0% |
| TGAAAAATGAGTATGATGTG+AGG | + | chr8_3:39043494-39043513 | None:intergenic | 30.0% | |
| ! | GTTGATAGATGAATTGAACT+TGG | + | chr8_3:39043608-39043627 | None:intergenic | 30.0% |
| !! | TATGATGAGATTTGTTGTTG+TGG | + | chr8_3:39043718-39043737 | None:intergenic | 30.0% |
| ! | TGTTGATGAATTGATGCATT+GGG | + | chr8_3:39043759-39043778 | None:intergenic | 30.0% |
| ! | TTGTTGATGAATTGATGCAT+TGG | + | chr8_3:39043760-39043779 | None:intergenic | 30.0% |
| AAGTTGTGGTTGTTAAATTG+TGG | + | chr8_3:39043823-39043842 | None:intergenic | 30.0% | |
| ATTGATGAAGAATGAAGTTG+TGG | + | chr8_3:39043837-39043856 | None:intergenic | 30.0% | |
| ! | CTATTGATTGTGGAGAATTA+AGG | + | chr8_3:39044067-39044086 | None:intergenic | 30.0% |
| !!! | AAAAAGGGTTTTGAAGAGAA+GGG | + | chr8_3:39044149-39044168 | None:intergenic | 30.0% |
| GTTTATAAAGGCTCACTTAA+TGG | - | chr8_3:39044260-39044279 | Msa1287700:intron | 30.0% | |
| CTTATCTCACAAACCTTAAT+GGG | - | chr8_3:39044284-39044303 | Msa1287700:intron | 30.0% | |
| ! | AGTGAGTAGTAACATTTTTG+AGG | + | chr8_3:39044331-39044350 | None:intergenic | 30.0% |
| !!! | GTTATTTTTAGTGCTTAGTG+AGG | + | chr8_3:39044436-39044455 | None:intergenic | 30.0% |
| !! | TTTAGTCATTTTGGACTTAG+GGG | + | chr8_3:39044508-39044527 | None:intergenic | 30.0% |
| CAAAAAGCAATGACGAAAAT+CGG | - | chr8_3:39044697-39044716 | Msa1287700:intron | 30.0% | |
| AAAAAGCAATGACGAAAATC+GGG | - | chr8_3:39044698-39044717 | Msa1287700:intron | 30.0% | |
| !! | AAAAACGAGTTTTGATACAG+CGG | + | chr8_3:39044758-39044777 | None:intergenic | 30.0% |
| ATCTGTGAAGGATAATCATT+AGG | + | chr8_3:39044916-39044935 | None:intergenic | 30.0% | |
| ATAGAAGAAAACTCTGTGAA+TGG | + | chr8_3:39045013-39045032 | None:intergenic | 30.0% | |
| ! | GAGTTTTCTTCTATGCTATT+AGG | - | chr8_3:39045019-39045038 | Msa1287700:CDS | 30.0% |
| TCTCGGTACTAAATCTTTGT+TGG | + | chr8_3:39039393-39039412 | Msa1287690:CDS | 35.0% | |
| AGTCCTATATTCACGTATCT+CGG | + | chr8_3:39039410-39039429 | Msa1287690:CDS | 35.0% | |
| CATTGATACAACATCAGACA+TGG | + | chr8_3:39039468-39039487 | Msa1287690:three_prime_UTR | 35.0% | |
| TATTATCGGAGGTTCATTGA+GGG | + | chr8_3:39039670-39039689 | None:intergenic | 35.0% | |
| TTATTATCGGAGGTTCATTG+AGG | + | chr8_3:39039671-39039690 | None:intergenic | 35.0% | |
| CTTGGTCATGTGATTTCTAA+AGG | + | chr8_3:39039790-39039809 | None:intergenic | 35.0% | |
| ! | CTTTAGAAATCACATGACCA+AGG | - | chr8_3:39039788-39039807 | Msa1287700:intron | 35.0% |
| !! | AGTAAGATTGATTTGAGGTC+AGG | + | chr8_3:39040125-39040144 | None:intergenic | 35.0% |
| ! | TGATGATTTGATGGATCAGT+TGG | + | chr8_3:39040165-39040184 | None:intergenic | 35.0% |
| TCCATCAAATCATCAATCCT+CGG | - | chr8_3:39040170-39040189 | Msa1287700:intron | 35.0% | |
| ACAAGGTGACAATCAAGAAT+CGG | + | chr8_3:39040205-39040224 | None:intergenic | 35.0% | |
| ! | TGAGATTGTGTGTGGATTAT+AGG | + | chr8_3:39040235-39040254 | None:intergenic | 35.0% |
| ! | TTGTTGGTTAAGAAGAAGGA+TGG | + | chr8_3:39040263-39040282 | None:intergenic | 35.0% |
| ! | AGAGTTTCCAGAAGTTTTTC+CGG | + | chr8_3:39040477-39040496 | None:intergenic | 35.0% |
| TTGAAGGAAAGTAGTGAGAA+AGG | + | chr8_3:39040524-39040543 | None:intergenic | 35.0% | |
| TTTCTCACTACTTTCCTTCA+AGG | - | chr8_3:39040523-39040542 | Msa1287700:intron | 35.0% | |
| !!! | GAGTGTAACGTTTTTTAAGC+TGG | + | chr8_3:39040636-39040655 | None:intergenic | 35.0% |
| !!! | ATGGATTGGATGTTGACTTT+TGG | + | chr8_3:39040683-39040702 | None:intergenic | 35.0% |
| ! | ACGTGATTTTCAGTATGGAT+TGG | + | chr8_3:39040697-39040716 | None:intergenic | 35.0% |
| ! | TATGGACGTGATTTTCAGTA+TGG | + | chr8_3:39040702-39040721 | None:intergenic | 35.0% |
| ! | GTTGTTTGTGGTTTGTGTTA+AGG | + | chr8_3:39040771-39040790 | None:intergenic | 35.0% |
| !! | TTGTGTTGTTCCGTTCTTTT+AGG | + | chr8_3:39040879-39040898 | None:intergenic | 35.0% |
| CATACAACAGGAAATTCAAC+AGG | - | chr8_3:39040929-39040948 | Msa1287700:intron | 35.0% | |
| ! | ACAGGAAATTCAACAGGTTT+TGG | - | chr8_3:39040935-39040954 | Msa1287700:intron | 35.0% |
| !! | AAATTCAACAGGTTTTGGTC+TGG | - | chr8_3:39040940-39040959 | Msa1287700:intron | 35.0% |
| ! | AGAAATAGGGTGTTACAAGT+TGG | + | chr8_3:39040990-39041009 | None:intergenic | 35.0% |
| CCTTATGCATGTATGAATTG+TGG | + | chr8_3:39041079-39041098 | None:intergenic | 35.0% | |
| CCACAATTCATACATGCATA+AGG | - | chr8_3:39041076-39041095 | Msa1287700:intron | 35.0% | |
| TATATTATTCCGCTGCTATG+TGG | + | chr8_3:39041113-39041132 | None:intergenic | 35.0% | |
| TCATGCAAGTGTCTAGATTA+GGG | + | chr8_3:39041267-39041286 | None:intergenic | 35.0% | |
| TTCATGCAAGTGTCTAGATT+AGG | + | chr8_3:39041268-39041287 | None:intergenic | 35.0% | |
| TAGACACTTGCATGAAAAAG+AGG | - | chr8_3:39041272-39041291 | Msa1287700:intron | 35.0% | |
| CTTGGAATGATGATATGGAA+TGG | + | chr8_3:39041527-39041546 | None:intergenic | 35.0% | |
| AGCTTGAAATGTAAGTGATG+GGG | + | chr8_3:39041635-39041654 | None:intergenic | 35.0% | |
| TACATTGGTGAATTTGTGGA+TGG | + | chr8_3:39041989-39042008 | None:intergenic | 35.0% | |
| ! | GGATTGGTGTATATGTACAT+TGG | + | chr8_3:39042004-39042023 | None:intergenic | 35.0% |
| TGGTGAATGTTGTGATTATG+TGG | + | chr8_3:39042025-39042044 | None:intergenic | 35.0% | |
| GCAATATGGATACAAGTATC+CGG | - | chr8_3:39042222-39042241 | Msa1287700:intron | 35.0% | |
| ! | ACATATAGCCGTTGATTATG+AGG | + | chr8_3:39042418-39042437 | None:intergenic | 35.0% |
| CAAGCTAATTTGGATGTGAT+TGG | + | chr8_3:39042459-39042478 | None:intergenic | 35.0% | |
| TAAGGAATTATGTGGAAGTG+TGG | + | chr8_3:39042695-39042714 | None:intergenic | 35.0% | |
| ATAGAGGGTTCATATGCAAT+TGG | - | chr8_3:39042815-39042834 | Msa1287700:intron | 35.0% | |
| !! | TGAACTTGTTTACCTGGTTT+TGG | + | chr8_3:39042910-39042929 | None:intergenic | 35.0% |
| CTTATGAGAATACATGGCAT+AGG | + | chr8_3:39042937-39042956 | None:intergenic | 35.0% | |
| TCGTATGATTTCGTTGTGTT+TGG | + | chr8_3:39043002-39043021 | None:intergenic | 35.0% | |
| ! | AAACTTGTTCCAAAGTGTAG+GGG | + | chr8_3:39043143-39043162 | None:intergenic | 35.0% |
| ! | CAAACTTGTTCCAAAGTGTA+GGG | + | chr8_3:39043144-39043163 | None:intergenic | 35.0% |
| ! | TTTTATGCTCGAAAACGTGA+AGG | + | chr8_3:39043355-39043374 | None:intergenic | 35.0% |
| ! | ATGAGTATGATGTGAGGTTT+TGG | + | chr8_3:39043488-39043507 | None:intergenic | 35.0% |
| ! | TTTTGTTAGTCGAGTCGTTT+GGG | + | chr8_3:39043560-39043579 | None:intergenic | 35.0% |
| ! | ATTTTGTTAGTCGAGTCGTT+TGG | + | chr8_3:39043561-39043580 | None:intergenic | 35.0% |
| ! | GTGTTAAGTTGTTCATGTGA+AGG | + | chr8_3:39043678-39043697 | None:intergenic | 35.0% |
| ATGCATTGGGTATCATGAAT+TGG | + | chr8_3:39043746-39043765 | None:intergenic | 35.0% | |
| AGAATTAAGGTAAGAGGGTT+AGG | + | chr8_3:39044054-39044073 | None:intergenic | 35.0% | |
| TGTGGAGAATTAAGGTAAGA+GGG | + | chr8_3:39044059-39044078 | None:intergenic | 35.0% | |
| TTGTGGAGAATTAAGGTAAG+AGG | + | chr8_3:39044060-39044079 | None:intergenic | 35.0% | |
| !!! | GAAAAAGGGTTTTGAAGAGA+AGG | + | chr8_3:39044150-39044169 | None:intergenic | 35.0% |
| AAAGCTCAAGAGGAGAAAAA+GGG | + | chr8_3:39044164-39044183 | None:intergenic | 35.0% | |
| AAAAGCTCAAGAGGAGAAAA+AGG | + | chr8_3:39044165-39044184 | None:intergenic | 35.0% | |
| CTTGTGTTAGTGAAGAGATA+GGG | + | chr8_3:39044241-39044260 | None:intergenic | 35.0% | |
| ACTTGTGTTAGTGAAGAGAT+AGG | + | chr8_3:39044242-39044261 | None:intergenic | 35.0% | |
| GCTTATCTCACAAACCTTAA+TGG | - | chr8_3:39044283-39044302 | Msa1287700:intron | 35.0% | |
| ! | GGTTGAATTAGAAATGGGTT+AGG | + | chr8_3:39044310-39044329 | None:intergenic | 35.0% |
| TAACACTAACGGTCACTTAA+CGG | - | chr8_3:39044364-39044383 | Msa1287700:intron | 35.0% | |
| !!! | GGGTATTTTGGTCATTTTGA+GGG | + | chr8_3:39044488-39044507 | None:intergenic | 35.0% |
| !!! | TTTTGGACTTAGGGGTATTT+TGG | + | chr8_3:39044500-39044519 | None:intergenic | 35.0% |
| !!! | TCTGTGTGTATTTTTGGTTG+GGG | + | chr8_3:39044559-39044578 | None:intergenic | 35.0% |
| !!! | CTCTGTGTGTATTTTTGGTT+GGG | + | chr8_3:39044560-39044579 | None:intergenic | 35.0% |
| ! | ATTGCCTCTGTGTGTATTTT+TGG | + | chr8_3:39044565-39044584 | None:intergenic | 35.0% |
| !!! | ATTGCTTTTTGAAGCTTCGA+AGG | + | chr8_3:39044688-39044707 | None:intergenic | 35.0% |
| ! | GGAGCTAATTGACTCAGAAT+TGG | - | chr8_3:39039358-39039377 | Msa1287700:CDS | 40.0% |
| GTACCGAGATACGTGAATAT+AGG | - | chr8_3:39039404-39039423 | Msa1287700:CDS | 40.0% | |
| GATACAACATCAGACATGGT+TGG | + | chr8_3:39039464-39039483 | Msa1287690:three_prime_UTR | 40.0% | |
| CATTGAGGGATTCTCTAAGT+TGG | + | chr8_3:39039656-39039675 | None:intergenic | 40.0% | |
| !! | TTGGGTTGGCAGGTTATTAT+CGG | + | chr8_3:39039684-39039703 | None:intergenic | 40.0% |
| AGTTAGAAGCTTTCTTGGGT+TGG | + | chr8_3:39039698-39039717 | None:intergenic | 40.0% | |
| ! | GGTCATGTGATTTCTAAAGG+TGG | + | chr8_3:39039787-39039806 | None:intergenic | 40.0% |
| ! | AGTTGTCGAAGTGTGAGTTT+TGG | + | chr8_3:39039831-39039850 | None:intergenic | 40.0% |
| GAGCATTTGAGGATTGTGTT+GGG | + | chr8_3:39039883-39039902 | None:intergenic | 40.0% | |
| CAACACAATCCTCAAATGCT+CGG | - | chr8_3:39039882-39039901 | Msa1287700:intron | 40.0% | |
| CTATGAACACCACCACAAAA+CGG | - | chr8_3:39039944-39039963 | Msa1287700:intron | 40.0% | |
| ATATACTCCATGAAGACACC+TGG | - | chr8_3:39039994-39040013 | Msa1287700:intron | 40.0% | |
| GAGTATTCTGTGATGCCATT+TGG | + | chr8_3:39040033-39040052 | None:intergenic | 40.0% | |
| ! | GATTTGATGGATCAGTTGGT+TGG | + | chr8_3:39040161-39040180 | None:intergenic | 40.0% |
| ! | TCCGAGGATTGATGATTTGA+TGG | + | chr8_3:39040174-39040193 | None:intergenic | 40.0% |
| AAATCATCAATCCTCGGAAG+CGG | - | chr8_3:39040176-39040195 | Msa1287700:intron | 40.0% | |
| GGATTATAGGCAGTTGAACA+AGG | + | chr8_3:39040222-39040241 | None:intergenic | 40.0% | |
| GGGTGAATTGAAGAAGCAAT+TGG | + | chr8_3:39040345-39040364 | None:intergenic | 40.0% | |
| !! | TTTGCAATTGATTTGGCTCC+GGG | + | chr8_3:39040416-39040435 | None:intergenic | 40.0% |
| !! | GTTTGCAATTGATTTGGCTC+CGG | + | chr8_3:39040417-39040436 | None:intergenic | 40.0% |
| GAAAGTAGTGAGAAAGGAGT+TGG | + | chr8_3:39040518-39040537 | None:intergenic | 40.0% | |
| CATGATGTTTGCTTCCTTGA+AGG | + | chr8_3:39040540-39040559 | None:intergenic | 40.0% | |
| !!! | GTTTTTTAAGCTGGTAGCTG+AGG | + | chr8_3:39040627-39040646 | None:intergenic | 40.0% |
| GTGTCTTTCGTTGAAGCATA+TGG | + | chr8_3:39040720-39040739 | None:intergenic | 40.0% | |
| CTCAAACCCACCTAAAAGAA+CGG | - | chr8_3:39040866-39040885 | Msa1287700:intron | 40.0% | |
| !! | GTTGTTCCGTTCTTTTAGGT+GGG | + | chr8_3:39040875-39040894 | None:intergenic | 40.0% |
| ! | TGTTGTTCCGTTCTTTTAGG+TGG | + | chr8_3:39040876-39040895 | None:intergenic | 40.0% |
| CATGTTATACCACATAGCAG+CGG | - | chr8_3:39041101-39041120 | Msa1287700:intron | 40.0% | |
| TCTCTGTATGGATGGATAGA+CGG | + | chr8_3:39041345-39041364 | None:intergenic | 40.0% | |
| TCATGTGATGCTAGTGTTCT+AGG | + | chr8_3:39041601-39041620 | None:intergenic | 40.0% | |
| GCTTGAAATGTAAGTGATGG+GGG | + | chr8_3:39041634-39041653 | None:intergenic | 40.0% | |
| !! | GACTTGGTGAATTTGTGTGT+TGG | + | chr8_3:39042055-39042074 | None:intergenic | 40.0% |
| GGCTATAATCAACGGCAATA+TGG | - | chr8_3:39042208-39042227 | Msa1287700:intron | 40.0% | |
| ATATCCATATTGCCGTTGAC+CGG | + | chr8_3:39042244-39042263 | None:intergenic | 40.0% | |
| TCATGCATCATATGTCGTGT+CGG | + | chr8_3:39042272-39042291 | None:intergenic | 40.0% | |
| !!! | TGTTTACCTGGTTTTGGCTT+AGG | + | chr8_3:39042904-39042923 | None:intergenic | 40.0% |
| ! | GGCAATTGAACTTGTTTACC+TGG | + | chr8_3:39042916-39042935 | None:intergenic | 40.0% |
| !!! | CATCTAGGGGTGTTTTATGA+AGG | + | chr8_3:39043108-39043127 | None:intergenic | 40.0% |
| CTTCATAAAACACCCCTAGA+TGG | - | chr8_3:39043106-39043125 | Msa1287700:intron | 40.0% | |
| TAAAACACCCCTAGATGGTT+AGG | - | chr8_3:39043111-39043130 | Msa1287700:intron | 40.0% | |
| GCTTTATCCTAACCATCTAG+GGG | + | chr8_3:39043121-39043140 | None:intergenic | 40.0% | |
| ! | GGCTTTATCCTAACCATCTA+GGG | + | chr8_3:39043122-39043141 | None:intergenic | 40.0% |
| ! | CCAAACTTGTTCCAAAGTGT+AGG | + | chr8_3:39043145-39043164 | None:intergenic | 40.0% |
| !! | CCTACACTTTGGAACAAGTT+TGG | - | chr8_3:39043142-39043161 | Msa1287700:intron | 40.0% |
| GGAACAAGTTTGGAAGCAAT+TGG | - | chr8_3:39043152-39043171 | Msa1287700:intron | 40.0% | |
| ! | TTTAGGGTTCCTTGTCAAAC+AGG | - | chr8_3:39043193-39043212 | Msa1287700:intron | 40.0% |
| ! | AAAATTTCTGGGCAGAATCG+TGG | - | chr8_3:39043271-39043290 | Msa1287700:intron | 40.0% |
| TAGGAGAATGTAGGCGAAAA+CGG | + | chr8_3:39043404-39043423 | None:intergenic | 40.0% | |
| GCTAAGTGTTAGGAGAATGT+AGG | + | chr8_3:39043413-39043432 | None:intergenic | 40.0% | |
| ! | GAGGCAATAGCTATTGATTG+TGG | + | chr8_3:39044077-39044096 | None:intergenic | 40.0% |
| AGAAGAGGCTAGAGAATCAA+GGG | + | chr8_3:39044113-39044132 | None:intergenic | 40.0% | |
| TAGAAGAGGCTAGAGAATCA+AGG | + | chr8_3:39044114-39044133 | None:intergenic | 40.0% | |
| GTTAGAGAGAAAAGCTCAAG+AGG | + | chr8_3:39044174-39044193 | None:intergenic | 40.0% | |
| !! | TTTTGGTCATTTTGAGGGCA+GGG | + | chr8_3:39044483-39044502 | None:intergenic | 40.0% |
| !! | ATTTTGGTCATTTTGAGGGC+AGG | + | chr8_3:39044484-39044503 | None:intergenic | 40.0% |
| !!! | GGGGTATTTTGGTCATTTTG+AGG | + | chr8_3:39044489-39044508 | None:intergenic | 40.0% |
| !! | TCGTAGAATTCGGTGTTAGA+AGG | + | chr8_3:39044535-39044554 | None:intergenic | 40.0% |
| !!! | CCTCTGTGTGTATTTTTGGT+TGG | + | chr8_3:39044561-39044580 | None:intergenic | 40.0% |
| CCAACCAAAAATACACACAG+AGG | - | chr8_3:39044558-39044577 | Msa1287700:intron | 40.0% | |
| !! | GACATGGTTGGTCTATCTTC+TGG | + | chr8_3:39039452-39039471 | Msa1287690:exon | 45.0% |
| AACACTGCATCAACCTTCGA+CGG | - | chr8_3:39039748-39039767 | Msa1287700:intron | 45.0% | |
| ! | TTCTAAAGGTGGTATTGCCG+TGG | + | chr8_3:39039776-39039795 | None:intergenic | 45.0% |
| !!! | GAAGTGTGAGTTTTGGTTGC+GGG | + | chr8_3:39039824-39039843 | None:intergenic | 45.0% |
| !!! | CGAAGTGTGAGTTTTGGTTG+CGG | + | chr8_3:39039825-39039844 | None:intergenic | 45.0% |
| GATTGTGTTGGGAGTCTTGA+AGG | + | chr8_3:39039872-39039891 | None:intergenic | 45.0% | |
| CGAGCATTTGAGGATTGTGT+TGG | + | chr8_3:39039884-39039903 | None:intergenic | 45.0% | |
| GGTGTATTCGAAGTCTGAAG+AGG | + | chr8_3:39039914-39039933 | None:intergenic | 45.0% | |
| ! | TTTTCTGGACCGTTTTGTGG+TGG | + | chr8_3:39039956-39039975 | None:intergenic | 45.0% |
| ACCACAAAACGGTCCAGAAA+AGG | - | chr8_3:39039955-39039974 | Msa1287700:intron | 45.0% | |
| ! | TCCTTTTCTGGACCGTTTTG+TGG | + | chr8_3:39039959-39039978 | None:intergenic | 45.0% |
| TGGTAGCATGAGATTGTGTG+TGG | + | chr8_3:39040243-39040262 | None:intergenic | 45.0% | |
| TCTGATGCAGACATCCGATA+AGG | - | chr8_3:39040368-39040387 | Msa1287700:intron | 45.0% | |
| CTATCTCGATTGCGCCTTAT+CGG | + | chr8_3:39040385-39040404 | None:intergenic | 45.0% | |
| GGTAATTCGGTAATGTCGTC+CGG | - | chr8_3:39040455-39040474 | Msa1287700:intron | 45.0% | |
| ATGTCGTCCGGAAAAACTTC+TGG | - | chr8_3:39040467-39040486 | Msa1287700:intron | 45.0% | |
| TCTGGAAACTCTTGCACTAC+CGG | - | chr8_3:39040485-39040504 | Msa1287700:intron | 45.0% | |
| !! | GAAAGGAGTTGGTGATTTGC+CGG | + | chr8_3:39040507-39040526 | None:intergenic | 45.0% |
| CAAGTGAAGAAGTCCTTGGA+TGG | + | chr8_3:39040578-39040597 | None:intergenic | 45.0% | |
| TTTAAGCTGGTAGCTGAGGA+AGG | + | chr8_3:39040623-39040642 | None:intergenic | 45.0% | |
| !! | TTGGCAAGGGAAGGTATCTT+TGG | + | chr8_3:39040807-39040826 | None:intergenic | 45.0% |
| CTGTTGTATGCGACATGTAC+GGG | + | chr8_3:39040919-39040938 | None:intergenic | 45.0% | |
| CCTGTTGTATGCGACATGTA+CGG | + | chr8_3:39040920-39040939 | None:intergenic | 45.0% | |
| ! | CTAGATTAGGGCTCTGATCT+AGG | + | chr8_3:39041255-39041274 | None:intergenic | 45.0% |
| AAAAGAGGAACTCCACTCCT+CGG | - | chr8_3:39041287-39041306 | Msa1287700:intron | 45.0% | |
| GTCTATCCATCCATACAGAG+AGG | - | chr8_3:39041344-39041363 | Msa1287700:intron | 45.0% | |
| ATCCATCCATACAGAGAGGT+AGG | - | chr8_3:39041348-39041367 | Msa1287700:intron | 45.0% | |
| GATGTAATGCTAACCCTCAG+TGG | + | chr8_3:39041388-39041407 | None:intergenic | 45.0% | |
| !! | GTGATGCTAGTGTTCTAGGA+GGG | + | chr8_3:39041597-39041616 | None:intergenic | 45.0% |
| ! | TGTGATGCTAGTGTTCTAGG+AGG | + | chr8_3:39041598-39041617 | None:intergenic | 45.0% |
| GACTCTTCTCTAGATGCATG+TGG | - | chr8_3:39042129-39042148 | Msa1287700:intron | 45.0% | |
| GGATACAAGTATCCGGTCAA+CGG | - | chr8_3:39042229-39042248 | Msa1287700:intron | 45.0% | |
| ! | GGGCTTTATCCTAACCATCT+AGG | + | chr8_3:39043123-39043142 | None:intergenic | 45.0% |
| AGGATAAAGCCCCTACACTT+TGG | - | chr8_3:39043131-39043150 | Msa1287700:intron | 45.0% | |
| TTCCTTGTCAAACAGGATCG+TGG | - | chr8_3:39043200-39043219 | Msa1287700:intron | 45.0% | |
| TGGAAAAATCGTGCCACGAT+GGG | + | chr8_3:39043237-39043256 | None:intergenic | 45.0% | |
| !! | CGGCATCGAAAACGGATTAA+CGG | + | chr8_3:39043384-39043403 | None:intergenic | 45.0% |
| TCGAGTCGTTTGGGAGAAAA+CGG | + | chr8_3:39043551-39043570 | None:intergenic | 45.0% | |
| !! | GAAATGGGTTAGGCCCATTA+AGG | + | chr8_3:39044300-39044319 | None:intergenic | 45.0% |
| !! | TTTGGTCATTTTGAGGGCAG+GGG | + | chr8_3:39044482-39044501 | None:intergenic | 45.0% |
| TGGTTGGGGTTCGTAGAATT+CGG | + | chr8_3:39044545-39044564 | None:intergenic | 45.0% | |
| !!! | GCTTTTTGAAGCTTCGAAGG+CGG | + | chr8_3:39044685-39044704 | None:intergenic | 45.0% |
| GAAGGGGCAAGCGTATGTTT+GGG | + | chr8_3:39039608-39039627 | Msa1287690:three_prime_UTR | 50.0% | |
| !! | TTGACGCAGTTGACTCGGAA+GGG | + | chr8_3:39039625-39039644 | None:intergenic | 50.0% |
| !! | ATTGACGCAGTTGACTCGGA+AGG | + | chr8_3:39039626-39039645 | None:intergenic | 50.0% |
| TTCCGAGTCAACTGCGTCAA+TGG | - | chr8_3:39039625-39039644 | Msa1287700:intron | 50.0% | |
| TGCCATTGACGCAGTTGACT+CGG | + | chr8_3:39039630-39039649 | None:intergenic | 50.0% | |
| GGTTGGCAGGTTATTATCGG+AGG | + | chr8_3:39039681-39039700 | None:intergenic | 50.0% | |
| !! | AGAAGCTTTCTTGGGTTGGC+AGG | + | chr8_3:39039694-39039713 | None:intergenic | 50.0% |
| ! | GGTTGATGCAGTGTTGCAGT+GGG | + | chr8_3:39039743-39039762 | None:intergenic | 50.0% |
| !! | AGGTTGATGCAGTGTTGCAG+TGG | + | chr8_3:39039744-39039763 | None:intergenic | 50.0% |
| ATCAACCTTCGACGGATCCA+CGG | - | chr8_3:39039756-39039775 | Msa1287700:intron | 50.0% | |
| TTGCGGGAAGTGAGTTTCCT+TGG | + | chr8_3:39039808-39039827 | None:intergenic | 50.0% | |
| TAATGCGCCAGGTGTCTTCA+TGG | + | chr8_3:39040004-39040023 | None:intergenic | 50.0% | |
| ! | TTTGGAGTGTCTAATGCGCC+AGG | + | chr8_3:39040015-39040034 | None:intergenic | 50.0% |
| GGCGCATTAGACACTCCAAA+TGG | - | chr8_3:39040015-39040034 | Msa1287700:intron | 50.0% | |
| ACTGCGTTCAGAACGAGGTA+TGG | + | chr8_3:39040063-39040082 | None:intergenic | 50.0% | |
| CCAAAACTGCGTTCAGAACG+AGG | + | chr8_3:39040068-39040087 | None:intergenic | 50.0% | |
| !! | CCTCGTTCTGAACGCAGTTT+TGG | - | chr8_3:39040065-39040084 | Msa1287700:intron | 50.0% |
| !! | AACAATACAGGAGCACCCCA+CGG | - | chr8_3:39040278-39040297 | Msa1287700:intron | 50.0% |
| CGGATGTCTGCATCAGAGTT+GGG | + | chr8_3:39040365-39040384 | None:intergenic | 50.0% | |
| TCGGATGTCTGCATCAGAGT+TGG | + | chr8_3:39040366-39040385 | None:intergenic | 50.0% | |
| CGATAAGGCGCAATCGAGAT+AGG | - | chr8_3:39040383-39040402 | Msa1287700:intron | 50.0% | |
| ATCGAGATAGGACTCGTTCC+CGG | - | chr8_3:39040395-39040414 | Msa1287700:intron | 50.0% | |
| GCAAACTCAACTTCCCTCTC+CGG | - | chr8_3:39040431-39040450 | Msa1287700:intron | 50.0% | |
| CGACATTACCGAATTACCGC+CGG | + | chr8_3:39040453-39040472 | None:intergenic | 50.0% | |
| ! | CACACTAGCTTCACCATCCA+AGG | - | chr8_3:39040562-39040581 | Msa1287700:intron | 50.0% |
| GGAGCAAGTGAAGAAGTCCT+TGG | + | chr8_3:39040582-39040601 | None:intergenic | 50.0% | |
| TGCGAAGGCTCAGTTGTTTG+TGG | + | chr8_3:39040783-39040802 | None:intergenic | 50.0% | |
| !! | GAAGGTATCTTTGGCTGCGA+AGG | + | chr8_3:39040798-39040817 | None:intergenic | 50.0% |
| !! | TGTGTTGGTTTGGCAAGGGA+AGG | + | chr8_3:39040816-39040835 | None:intergenic | 50.0% |
| !! | CAGGTGTGTTGGTTTGGCAA+GGG | + | chr8_3:39040820-39040839 | None:intergenic | 50.0% |
| !! | TTGCTCCAGGTGTGTTGGTT+TGG | + | chr8_3:39040826-39040845 | None:intergenic | 50.0% |
| ! | TAGGTGGGTTTGAGCGTAGT+GGG | + | chr8_3:39040860-39040879 | None:intergenic | 50.0% |
| ! | TTAGGTGGGTTTGAGCGTAG+TGG | + | chr8_3:39040861-39040880 | None:intergenic | 50.0% |
| !! | GACATGTACGGGAGTACTGT+CGG | + | chr8_3:39040908-39040927 | None:intergenic | 50.0% |
| CCGTACATGTCGCATACAAC+AGG | - | chr8_3:39040917-39040936 | Msa1287700:intron | 50.0% | |
| !! | ACAAGTTGGTATCAGAGCCG+TGG | + | chr8_3:39040976-39040995 | None:intergenic | 50.0% |
| ! | GTTGTTGCTTGTTGATGCCG+AGG | + | chr8_3:39041307-39041326 | None:intergenic | 50.0% |
| CATCCATACAGAGAGGTAGG+CGG | - | chr8_3:39041351-39041370 | Msa1287700:intron | 50.0% | |
| !! | TGCTAGTGTTCTAGGAGGGA+GGG | + | chr8_3:39041593-39041612 | None:intergenic | 50.0% |
| !! | ATGCTAGTGTTCTAGGAGGG+AGG | + | chr8_3:39041594-39041613 | None:intergenic | 50.0% |
| TGTGGTACCAAACTCCTCCA+AGG | - | chr8_3:39042147-39042166 | Msa1287700:intron | 50.0% | |
| TCATAAGGTGACGACCTTGG+AGG | + | chr8_3:39042164-39042183 | None:intergenic | 50.0% | |
| GCATCATAAGGTGACGACCT+TGG | + | chr8_3:39042167-39042186 | None:intergenic | 50.0% | |
| GTATCCGGTCAACGGCAATA+TGG | - | chr8_3:39042237-39042256 | Msa1287700:intron | 50.0% | |
| TGAGCACCTAAGCCAAAACC+AGG | - | chr8_3:39042895-39042914 | Msa1287700:intron | 50.0% | |
| TGCCACGATCCTGTTTGACA+AGG | + | chr8_3:39043205-39043224 | None:intergenic | 50.0% | |
| CTGGAAAAATCGTGCCACGA+TGG | + | chr8_3:39043238-39043257 | None:intergenic | 50.0% | |
| ACTAAGAACGTGCCACGATG+CGG | + | chr8_3:39043307-39043326 | None:intergenic | 50.0% | |
| ! | GGCGAAAACGGCATCGAAAA+CGG | + | chr8_3:39043392-39043411 | None:intergenic | 50.0% |
| CGAGTCGTTTGGGAGAAAAC+GGG | + | chr8_3:39043550-39043569 | None:intergenic | 50.0% | |
| CAAGGGTTGGAGCTAAAGTG+AGG | + | chr8_3:39044096-39044115 | None:intergenic | 50.0% | |
| GAGGCTAGAGAATCAAGGGT+TGG | + | chr8_3:39044109-39044128 | None:intergenic | 50.0% | |
| GGACTAGAGAGAGCTAGAAG+AGG | + | chr8_3:39044128-39044147 | None:intergenic | 50.0% | |
| GATCAGAACCTGCAGGATCA+CGG | + | chr8_3:39044661-39044680 | None:intergenic | 50.0% | |
| GGAAGGGGCAAGCGTATGTT+TGG | + | chr8_3:39039609-39039628 | Msa1287690:three_prime_UTR | 55.0% | |
| !! | TGACGCAGTTGACTCGGAAG+GGG | + | chr8_3:39039624-39039643 | Msa1287690:three_prime_UTR | 55.0% |
| TATTGCCGTGGATCCGTCGA+AGG | + | chr8_3:39039764-39039783 | None:intergenic | 55.0% | |
| ! | AGGAGCATGCCGAGCATTTG+AGG | + | chr8_3:39039894-39039913 | None:intergenic | 55.0% |
| AGAATCGGTATCCGCTTCCG+AGG | + | chr8_3:39040190-39040209 | None:intergenic | 55.0% | |
| ! | GTGGGGTGCTCCTGTATTGT+TGG | + | chr8_3:39040279-39040298 | None:intergenic | 55.0% |
| AGACCGAGTGTTTCTCCGTG+GGG | + | chr8_3:39040296-39040315 | None:intergenic | 55.0% | |
| CAGACCGAGTGTTTCTCCGT+GGG | + | chr8_3:39040297-39040316 | None:intergenic | 55.0% | |
| TCAGACCGAGTGTTTCTCCG+TGG | + | chr8_3:39040298-39040317 | None:intergenic | 55.0% | |
| AACTCAACTTCCCTCTCCGG+CGG | - | chr8_3:39040434-39040453 | Msa1287700:intron | 55.0% | |
| TTCCCTCTCCGGCGGTAATT+CGG | - | chr8_3:39040442-39040461 | Msa1287700:intron | 55.0% | |
| TACCGAATTACCGCCGGAGA+GGG | + | chr8_3:39040447-39040466 | None:intergenic | 55.0% | |
| TTACCGAATTACCGCCGGAG+AGG | + | chr8_3:39040448-39040467 | None:intergenic | 55.0% | |
| GGACTTCTTCACTTGCTCCG+CGG | - | chr8_3:39040583-39040602 | Msa1287700:intron | 55.0% | |
| AGGTGGGAAGTTCTTGACCG+CGG | + | chr8_3:39040603-39040622 | None:intergenic | 55.0% | |
| AGCTGGTAGCTGAGGAAGGT+GGG | + | chr8_3:39040619-39040638 | None:intergenic | 55.0% | |
| AAGCTGGTAGCTGAGGAAGG+TGG | + | chr8_3:39040620-39040639 | None:intergenic | 55.0% | |
| !! | CCAGGTGTGTTGGTTTGGCA+AGG | + | chr8_3:39040821-39040840 | None:intergenic | 55.0% |
| CCTTGCCAAACCAACACACC+TGG | - | chr8_3:39040818-39040837 | Msa1287700:intron | 55.0% | |
| ! | AGGTGGGTTTGAGCGTAGTG+GGG | + | chr8_3:39040859-39040878 | None:intergenic | 55.0% |
| GTTGGTATCAGAGCCGTGGT+CGG | + | chr8_3:39040972-39040991 | None:intergenic | 55.0% | |
| ! | TGCTTGTTGATGCCGAGGAG+TGG | + | chr8_3:39041302-39041321 | None:intergenic | 55.0% |
| CGCCTACCTCTCTGTATGGA+TGG | + | chr8_3:39041353-39041372 | None:intergenic | 55.0% | |
| TAACCCTCAGTGGTCTGTGG+TGG | + | chr8_3:39041378-39041397 | None:intergenic | 55.0% | |
| TGCTAACCCTCAGTGGTCTG+TGG | + | chr8_3:39041381-39041400 | None:intergenic | 55.0% | |
| GTGACGACCTTGGAGGAGTT+TGG | + | chr8_3:39042157-39042176 | None:intergenic | 55.0% | |
| TCAAACAGGATCGTGGCACG+TGG | - | chr8_3:39043207-39043226 | Msa1287700:intron | 55.0% | |
| CAAACAGGATCGTGGCACGT+GGG | - | chr8_3:39043208-39043227 | Msa1287700:intron | 55.0% | |
| CTAAGAACGTGCCACGATGC+GGG | + | chr8_3:39043306-39043325 | None:intergenic | 55.0% | |
| CTGTTACACCGTGATCCTGC+AGG | - | chr8_3:39044650-39044669 | Msa1287700:intron | 55.0% | |
| GCACCCCACGGAGAAACACT+CGG | - | chr8_3:39040290-39040309 | Msa1287700:intron | 60.0% | |
| GCAGGTTGCTCCAGGTGTGT+TGG | + | chr8_3:39040831-39040850 | None:intergenic | 60.0% | |
| ! | GGTGGGTTTGAGCGTAGTGG+GGG | + | chr8_3:39040858-39040877 | None:intergenic | 60.0% |
| GGTCTGGACAAGACCGACCA+CGG | - | chr8_3:39040956-39040975 | Msa1287700:intron | 60.0% | |
| TGGATGGATAGACGGCGTGC+AGG | + | chr8_3:39041337-39041356 | None:intergenic | 60.0% | |
| GGACCGCCTACCTCTCTGTA+TGG | + | chr8_3:39041357-39041376 | None:intergenic | 60.0% | |
| GGTCCACCACAGACCACTGA+GGG | - | chr8_3:39041372-39041391 | Msa1287700:intron | 60.0% | |
| TGGGCAGAATCGTGGCACGT+TGG | - | chr8_3:39043279-39043298 | Msa1287700:intron | 60.0% | |
| AGGCGGTGATCAGAACCTGC+AGG | + | chr8_3:39044668-39044687 | None:intergenic | 60.0% | |
| GGGGAGTAGCAGGTTGCTCC+AGG | + | chr8_3:39040839-39040858 | None:intergenic | 65.0% | |
| ! | GAGCGTAGTGGGGGAGTAGC+AGG | + | chr8_3:39040849-39040868 | None:intergenic | 65.0% |
| CGGTCCACCACAGACCACTG+AGG | - | chr8_3:39041371-39041390 | Msa1287700:intron | 65.0% | |
| GGCACGTGGGTCTCCCATCG+TGG | - | chr8_3:39043221-39043240 | Msa1287700:intron | 70.0% | |
| GGCACGTTGGTCCCGCATCG+TGG | - | chr8_3:39043292-39043311 | Msa1287700:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 39039356 | 39045075 | 39039356 | ID=Msa1287700;Name=Msa1287700 |
| chr8_3 | mRNA | 39039356 | 39045075 | 39039356 | ID=Msa1287700-mRNA-1;Parent=Msa1287700;Name=Msa1287700-mRNA-1;_AED=0.66;_eAED=0.66;_QI=0|0|0|0.5|1|1|2|0|84 |
| chr8_3 | exon | 39044940 | 39045075 | 39044940 | ID=Msa1287700-mRNA-1:exon:10992;Parent=Msa1287700-mRNA-1 |
| chr8_3 | exon | 39039356 | 39039474 | 39039356 | ID=Msa1287700-mRNA-1:exon:10991;Parent=Msa1287700-mRNA-1 |
| chr8_3 | CDS | 39044940 | 39045075 | 39044940 | ID=Msa1287700-mRNA-1:cds;Parent=Msa1287700-mRNA-1 |
| chr8_3 | CDS | 39039356 | 39039474 | 39039356 | ID=Msa1287700-mRNA-1:cds;Parent=Msa1287700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
