Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808550 | XP_003614638.1 | 95.500 | 400 | 13 | 1 | 1 | 400 | 1 | 395 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808550 | sp|Q9C942|CSE_ARATH | 34.884 | 301 | 188 | 3 | 103 | 396 | 24 | 323 | 2.01e-57 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808550 | G7K1K2 | 95.500 | 400 | 13 | 1 | 1 | 400 | 1 | 395 | 0.0 | 785 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0730270 | Msa0808550 | 0.881354 | 2.573278e-70 | -8.615850e-47 |
| Msa0808550 | Msa0849330 | 0.866152 | 3.513235e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808550 | MtrunA17_Chr5g0423541 | 95.500 | 400 | 13 | 1 | 1 | 400 | 1 | 395 | 0.0 | 785 |
| Msa0808550 | MtrunA17_Chr1g0209741 | 68.000 | 400 | 105 | 5 | 1 | 398 | 1 | 379 | 0.0 | 564 |
| Msa0808550 | MtrunA17_Chr7g0215451 | 57.738 | 336 | 136 | 2 | 59 | 394 | 7 | 336 | 1.43e-141 | 407 |
| Msa0808550 | MtrunA17_Chr6g0457581 | 54.142 | 338 | 149 | 2 | 59 | 396 | 6 | 337 | 7.10e-136 | 392 |
| Msa0808550 | MtrunA17_Chr6g0460121 | 58.865 | 282 | 115 | 1 | 115 | 396 | 20 | 300 | 9.02e-127 | 368 |
| Msa0808550 | MtrunA17_Chr6g0484431 | 52.143 | 280 | 127 | 3 | 57 | 335 | 8 | 281 | 2.05e-108 | 320 |
| Msa0808550 | MtrunA17_Chr1g0212901 | 45.172 | 290 | 158 | 1 | 108 | 397 | 6 | 294 | 1.19e-92 | 281 |
| Msa0808550 | MtrunA17_Chr1g0195501 | 45.745 | 282 | 152 | 1 | 115 | 396 | 11 | 291 | 2.39e-88 | 270 |
| Msa0808550 | MtrunA17_Chr7g0269371 | 43.554 | 287 | 160 | 1 | 108 | 394 | 4 | 288 | 1.77e-85 | 263 |
| Msa0808550 | MtrunA17_Chr4g0047891 | 39.209 | 278 | 169 | 0 | 120 | 397 | 47 | 324 | 7.30e-71 | 225 |
| Msa0808550 | MtrunA17_Chr4g0071671 | 36.213 | 301 | 184 | 3 | 103 | 396 | 15 | 314 | 3.32e-58 | 192 |
| Msa0808550 | MtrunA17_Chr1g0199771 | 34.532 | 278 | 178 | 4 | 118 | 393 | 37 | 312 | 1.14e-53 | 181 |
| Msa0808550 | MtrunA17_Chr3g0140391 | 31.673 | 281 | 176 | 8 | 120 | 396 | 103 | 371 | 2.47e-36 | 136 |
| Msa0808550 | MtrunA17_Chr6g0479331 | 33.793 | 290 | 170 | 12 | 114 | 396 | 116 | 390 | 6.90e-33 | 127 |
| Msa0808550 | MtrunA17_Chr1g0209761 | 67.143 | 70 | 23 | 0 | 329 | 398 | 12 | 81 | 1.16e-25 | 99.4 |
| Msa0808550 | MtrunA17_Chr6g0484421 | 55.385 | 65 | 29 | 0 | 336 | 400 | 1 | 65 | 1.90e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0808550 | AT1G77420.1 | 61.853 | 367 | 134 | 2 | 34 | 400 | 22 | 382 | 1.01e-167 | 475 |
| Msa0808550 | AT5G16120.3 | 59.581 | 334 | 129 | 2 | 61 | 394 | 10 | 337 | 9.78e-147 | 420 |
| Msa0808550 | AT5G16120.1 | 59.581 | 334 | 129 | 2 | 61 | 394 | 10 | 337 | 9.78e-147 | 420 |
| Msa0808550 | AT5G16120.2 | 59.581 | 334 | 129 | 2 | 61 | 394 | 28 | 355 | 1.21e-146 | 421 |
| Msa0808550 | AT5G16120.4 | 59.581 | 334 | 129 | 2 | 61 | 394 | 42 | 369 | 1.47e-146 | 421 |
| Msa0808550 | AT2G39410.2 | 45.238 | 294 | 160 | 1 | 103 | 396 | 2 | 294 | 2.25e-90 | 275 |
| Msa0808550 | AT2G39420.1 | 45.392 | 293 | 159 | 1 | 106 | 398 | 5 | 296 | 5.59e-90 | 275 |
| Msa0808550 | AT3G62860.1 | 44.681 | 282 | 154 | 1 | 115 | 396 | 12 | 291 | 5.70e-87 | 268 |
| Msa0808550 | AT2G47630.1 | 44.027 | 293 | 164 | 0 | 104 | 396 | 1 | 293 | 7.93e-87 | 268 |
| Msa0808550 | AT3G55180.1 | 45.263 | 285 | 156 | 0 | 115 | 399 | 8 | 292 | 6.21e-85 | 261 |
| Msa0808550 | AT2G39400.1 | 45.907 | 281 | 151 | 1 | 118 | 398 | 11 | 290 | 8.41e-85 | 261 |
| Msa0808550 | AT1G11090.1 | 44.803 | 279 | 154 | 0 | 120 | 398 | 38 | 316 | 2.49e-81 | 253 |
| Msa0808550 | AT3G62860.2 | 44.715 | 246 | 136 | 0 | 151 | 396 | 3 | 248 | 4.33e-75 | 236 |
| Msa0808550 | AT3G55190.1 | 39.932 | 293 | 174 | 2 | 108 | 399 | 7 | 298 | 1.02e-74 | 235 |
| Msa0808550 | AT2G47630.2 | 43.952 | 248 | 139 | 0 | 151 | 398 | 3 | 250 | 6.78e-70 | 223 |
| Msa0808550 | AT2G47630.3 | 45.378 | 238 | 130 | 0 | 161 | 398 | 33 | 270 | 1.87e-69 | 222 |
| Msa0808550 | AT2G39400.2 | 44.811 | 212 | 116 | 1 | 118 | 329 | 11 | 221 | 6.68e-59 | 192 |
| Msa0808550 | AT1G52760.1 | 34.884 | 301 | 188 | 3 | 103 | 396 | 24 | 323 | 2.05e-58 | 194 |
| Msa0808550 | AT5G14980.1 | 32.881 | 295 | 195 | 3 | 107 | 400 | 27 | 319 | 7.62e-56 | 187 |
| Msa0808550 | AT5G19290.1 | 32.881 | 295 | 196 | 2 | 107 | 400 | 27 | 320 | 9.93e-54 | 181 |
| Msa0808550 | AT5G11650.1 | 30.556 | 324 | 206 | 11 | 79 | 396 | 68 | 378 | 1.85e-34 | 132 |
| Msa0808550 | AT1G73480.1 | 30.249 | 281 | 182 | 7 | 120 | 397 | 194 | 463 | 1.67e-32 | 127 |
| Msa0808550 | AT1G18360.1 | 30.496 | 282 | 181 | 8 | 120 | 397 | 112 | 382 | 1.83e-30 | 120 |
| Msa0808550 | AT2G39410.1 | 42.991 | 107 | 60 | 1 | 103 | 209 | 2 | 107 | 2.24e-27 | 105 |
| Msa0808550 | AT5G11650.2 | 33.793 | 145 | 88 | 6 | 108 | 250 | 100 | 238 | 7.44e-15 | 75.1 |
Find 84 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGATCATTGCTTGTTTA+AGG | 0.083877 | 5_3:+33033216 | Msa0808550:CDS |
| CTGCAAAGGGTTGTTGTATA+TGG | 0.197301 | 5_3:-33033008 | None:intergenic |
| TTGTCTCATGGCTTGATTCT+AGG | 0.244614 | 5_3:+33036673 | Msa0808550:CDS |
| TTATCTTTCTAAGTCATTCT+TGG | 0.248561 | 5_3:+33036734 | Msa0808550:three_prime_UTR |
| AAATGGTTACCACTGCATTT+TGG | 0.257020 | 5_3:+33036608 | Msa0808550:CDS |
| GCTATGGACTATCCAGGTTT+TGG | 0.259890 | 5_3:+33034179 | Msa0808550:CDS |
| GCACCATTATTGATTCTTCA+TGG | 0.293013 | 5_3:+33036498 | Msa0808550:CDS |
| TACAGAAATTTGCTCACTAA+TGG | 0.293286 | 5_3:-33036543 | None:intergenic |
| ACTTTAAAGCTCTATGAAAA+TGG | 0.295246 | 5_3:+33036591 | Msa0808550:CDS |
| TGTAATCTCACTTAAATATA+AGG | 0.296374 | 5_3:-33032847 | None:intergenic |
| ATTTGAAGGAGCCAGATAAT+TGG | 0.320173 | 5_3:+33034586 | Msa0808550:CDS |
| GAGCATTATACACAAATAAA+AGG | 0.327592 | 5_3:+33034263 | Msa0808550:CDS |
| CCCACTAAGTTTATTGATCA+TGG | 0.332184 | 5_3:+33032925 | Msa0808550:exon |
| TTTGGGAAGAGCTTTGCTTT+TGG | 0.337150 | 5_3:-33035608 | None:intergenic |
| AAACAAAGACCTTGCTGAAC+TGG | 0.340152 | 5_3:+33035628 | Msa0808550:CDS |
| AATAAACTTAGTGGGATATC+AGG | 0.347666 | 5_3:-33032917 | None:intergenic |
| AGTTCTGTTGGGGCAGTCAA+TGG | 0.349175 | 5_3:+33034539 | Msa0808550:CDS |
| AGAACCGAGTAAAAGAAAAT+TGG | 0.356076 | 5_3:+33035658 | Msa0808550:CDS |
| AGTTCAGCAAGGTCTTTGTT+TGG | 0.377018 | 5_3:-33035626 | None:intergenic |
| ACATGCACATTCTTCTTTGA+AGG | 0.377141 | 5_3:+33033870 | Msa0808550:CDS |
| ATCACAGCATCCCAATTATC+TGG | 0.383934 | 5_3:-33034597 | None:intergenic |
| AGAATGACTTAGAAAGATAA+AGG | 0.390234 | 5_3:-33036731 | None:intergenic |
| GTTCAGCAAGGTCTTTGTTT+GGG | 0.393636 | 5_3:-33035625 | None:intergenic |
| TCGACAAGATCATCGAAGTT+TGG | 0.400778 | 5_3:-33034230 | None:intergenic |
| CATGATCGGAAGTTCCAAAA+TGG | 0.402850 | 5_3:-33032747 | None:intergenic |
| TTTGAAGGAGCCAGATAATT+GGG | 0.402919 | 5_3:+33034587 | Msa0808550:CDS |
| CGAGGTAATTCTCTCATATC+AGG | 0.408211 | 5_3:-33034516 | None:intergenic |
| TCTTCACTCACACCTTCAAT+TGG | 0.413503 | 5_3:-33033109 | None:intergenic |
| GCGAGGAGAATTGCTGCATC+TGG | 0.415251 | 5_3:+33034143 | Msa0808550:CDS |
| GGGGCAGTCAATGGGTGGGG+CGG | 0.416241 | 5_3:+33034548 | Msa0808550:CDS |
| TGCAAAGGGTTGTTGTATAT+GGG | 0.418616 | 5_3:-33033007 | None:intergenic |
| GAATTACCTCGAGTTCTGTT+GGG | 0.421706 | 5_3:+33034528 | Msa0808550:CDS |
| CTGTTGGGGCAGTCAATGGG+TGG | 0.425862 | 5_3:+33034543 | Msa0808550:CDS |
| AACGCCTTCATTACTGCATC+AGG | 0.429805 | 5_3:-33035563 | None:intergenic |
| TGAAAGGAATTCGAGGGGAT+TGG | 0.432685 | 5_3:+33033767 | Msa0808550:CDS |
| AGGATGTGAGGTTCTTTGAT+TGG | 0.434088 | 5_3:-33032970 | None:intergenic |
| GTTGGGGCAGTCAATGGGTG+GGG | 0.435664 | 5_3:+33034545 | Msa0808550:CDS |
| AAATACACAGATGCCTTGAT+TGG | 0.442711 | 5_3:-33033828 | None:intergenic |
| GCTCCATGAAGAATCAATAA+TGG | 0.456411 | 5_3:-33036501 | None:intergenic |
| TTCGCTTAAAGTTTATTTGA+AGG | 0.460608 | 5_3:+33034572 | Msa0808550:CDS |
| TCCATGATCAATAAACTTAG+TGG | 0.468452 | 5_3:-33032926 | None:intergenic |
| AAGGTAGTTGATTCTGCAAA+GGG | 0.470704 | 5_3:-33033021 | None:intergenic |
| TCGTAACAAATAACATTGTA+AGG | 0.471754 | 5_3:-33036109 | None:intergenic |
| ACAGCTTGAATTATATCATC+AGG | 0.475068 | 5_3:-33036639 | None:intergenic |
| AAGAGCTGGATGCCAGAGTC+AGG | 0.476747 | 5_3:+33033801 | Msa0808550:CDS |
| GTTCTGTTGGGGCAGTCAAT+GGG | 0.477766 | 5_3:+33034540 | Msa0808550:CDS |
| GATAATCCACGACTTAAAAC+AGG | 0.483138 | 5_3:+33036133 | Msa0808550:CDS |
| TTCTAGAATATGCAAAATCA+AGG | 0.484935 | 5_3:-33033156 | None:intergenic |
| AGAATTACCTCGAGTTCTGT+TGG | 0.488737 | 5_3:+33034527 | Msa0808550:CDS |
| TTGATTGGAGTTCCTGACTC+TGG | 0.493591 | 5_3:-33033813 | None:intergenic |
| TTGTTGTATATGGGAGAGAA+AGG | 0.494964 | 5_3:-33032998 | None:intergenic |
| TGTTGGGGCAGTCAATGGGT+GGG | 0.497490 | 5_3:+33034544 | Msa0808550:CDS |
| AAGAGAAAAGCACCAATTGA+AGG | 0.506066 | 5_3:+33033097 | Msa0808550:CDS |
| TTCATGATGACATTGTCTCA+TGG | 0.511182 | 5_3:+33036661 | Msa0808550:CDS |
| TATGGGAGAGAAAGGTATGA+AGG | 0.513732 | 5_3:-33032990 | None:intergenic |
| TTGTTAAGTAGTGGTATGAA+AGG | 0.518878 | 5_3:+33033751 | Msa0808550:intron |
| TCTTCTGCTCTGATTCCAGC+AGG | 0.519878 | 5_3:-33033596 | None:intergenic |
| CCTTCTGAAAGTCCAAAACC+TGG | 0.522547 | 5_3:-33034191 | None:intergenic |
| CGAGGAGAATTGCTGCATCT+GGG | 0.538646 | 5_3:+33034144 | Msa0808550:CDS |
| AAAGGTAGTTGATTCTGCAA+AGG | 0.539522 | 5_3:-33033022 | None:intergenic |
| AATTGAGTCAAAAGTAGAGA+AGG | 0.554168 | 5_3:+33036183 | Msa0808550:CDS |
| GGACTTTCAGAAGGATTGCA+TGG | 0.558308 | 5_3:+33034200 | Msa0808550:CDS |
| ACCACCTGATGCAGTAATGA+AGG | 0.558767 | 5_3:+33035559 | Msa0808550:CDS |
| TCAATGAAATGAAAGTGCTA+TGG | 0.564083 | 5_3:-33032772 | None:intergenic |
| AATGAGCTTACTTTACACAT+TGG | 0.565047 | 5_3:-33034630 | None:intergenic |
| AGAGTCAGGAACTCCAATCA+AGG | 0.570762 | 5_3:+33033815 | Msa0808550:CDS |
| TCTTCATGGAGCAGCAGACA+AGG | 0.573213 | 5_3:+33036512 | Msa0808550:CDS |
| ATGTTCACATATCACAATGA+AGG | 0.579876 | 5_3:-33036851 | None:intergenic |
| AGAAAGGTATGAAGGATGTG+AGG | 0.580756 | 5_3:-33032982 | None:intergenic |
| AGATAAAGGAAATATTCCAT+TGG | 0.581091 | 5_3:-33036717 | None:intergenic |
| TCCACGACTTAAAACAGGCA+TGG | 0.581144 | 5_3:+33036138 | Msa0808550:CDS |
| GTGGTATGAAAGGAATTCGA+GGG | 0.591527 | 5_3:+33033761 | Msa0808550:intron |
| AATTACCTCGAGTTCTGTTG+GGG | 0.593417 | 5_3:+33034529 | Msa0808550:CDS |
| CTCTGAAAGCCAGTTCAGCA+AGG | 0.602732 | 5_3:-33035637 | None:intergenic |
| GTATGAAAATGCATCTAGCA+AGG | 0.604169 | 5_3:+33036563 | Msa0808550:CDS |
| CCATGATCAATAAACTTAGT+GGG | 0.608766 | 5_3:-33032925 | None:intergenic |
| AAAGTGCTATGGTCCATGAT+CGG | 0.613930 | 5_3:-33032761 | None:intergenic |
| AATGCACAAATTGAAACTGA+AGG | 0.615703 | 5_3:-33036926 | None:intergenic |
| AGTGGTATGAAAGGAATTCG+AGG | 0.622926 | 5_3:+33033760 | Msa0808550:intron |
| TGGTATGAAAGGAATTCGAG+GGG | 0.632293 | 5_3:+33033762 | Msa0808550:CDS |
| GACTGCCCCAACAGAACTCG+AGG | 0.642073 | 5_3:-33034534 | None:intergenic |
| TTACAATGTTATTTGTTACG+AGG | 0.659216 | 5_3:+33036111 | Msa0808550:CDS |
| GCCTTCATTACTGCATCAGG+TGG | 0.660106 | 5_3:-33035560 | None:intergenic |
| GTTCCCCTTCCAAAATGCAG+TGG | 0.684497 | 5_3:-33036617 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAATATAATTATATGTAT+CGG | - | chr5_3:33033419-33033438 | None:intergenic | 10.0% |
| !! | TTAAATCTATATTGTAATAA+TGG | + | chr5_3:33035764-33035783 | Msa0808550:intron | 10.0% |
| !! | ATAAAAAATAAAAAACTCCA+AGG | - | chr5_3:33033304-33033323 | None:intergenic | 15.0% |
| !!! | TTTTATAAGTAAATGTTAGT+TGG | + | chr5_3:33033318-33033337 | Msa0808550:intron | 15.0% |
| !! | AAGCTAAATAAAATAGAAAT+GGG | - | chr5_3:33033523-33033542 | None:intergenic | 15.0% |
| !! | AAAGCTAAATAAAATAGAAA+TGG | - | chr5_3:33033524-33033543 | None:intergenic | 15.0% |
| !!! | ATTTGTTGAACATAATAAAA+CGG | - | chr5_3:33033641-33033660 | None:intergenic | 15.0% |
| !!! | TAACTTTTATTTTGTTTGAT+TGG | + | chr5_3:33033692-33033711 | Msa0808550:intron | 15.0% |
| !!! | TGAAAATGTTTCTTTTATAA+TGG | + | chr5_3:33033961-33033980 | Msa0808550:intron | 15.0% |
| !! | TAAAAAATCAAAAAGTGAAT+AGG | - | chr5_3:33034113-33034132 | None:intergenic | 15.0% |
| !!! | TCTATTTTCTCAAATATTAT+TGG | - | chr5_3:33034371-33034390 | None:intergenic | 15.0% |
| !! | TTTAAACATATTGGTATTAT+TGG | + | chr5_3:33034767-33034786 | Msa0808550:intron | 15.0% |
| !!! | AAAAAACAATGAATTTTGTA+TGG | + | chr5_3:33036451-33036470 | Msa0808550:intron | 15.0% |
| !!! | ATTATTTTTGCAATTCAATT+TGG | + | chr5_3:33036808-33036827 | Msa0808550:intron | 15.0% |
| !!! | TTATTTTTGCAATTCAATTT+GGG | + | chr5_3:33036809-33036828 | Msa0808550:intron | 15.0% |
| !!! | CTTTTTTTGTGCAAAATTTT+AGG | + | chr5_3:33032806-33032825 | Msa0808550:five_prime_UTR | 20.0% |
| !! | TGTAATCTCACTTAAATATA+AGG | - | chr5_3:33032850-33032869 | None:intergenic | 20.0% |
| !!! | ATATTGAGTTTTGTTGTAAA+AGG | - | chr5_3:33033043-33033062 | None:intergenic | 20.0% |
| !!! | TGATTTTATTTGTTAAGTAG+TGG | + | chr5_3:33033742-33033761 | Msa0808550:intron | 20.0% |
| !!! | TTTTGAAGTTTCTTAAAAGT+CGG | + | chr5_3:33034048-33034067 | Msa0808550:intron | 20.0% |
| !!! | CACTTTTTGATTTTTTATTC+AGG | + | chr5_3:33034116-33034135 | Msa0808550:intron | 20.0% |
| !!! | AATATTATTGGTTTATGAGT+CGG | - | chr5_3:33034359-33034378 | None:intergenic | 20.0% |
| !!! | AGAGTCTATTTTAAACATAT+TGG | + | chr5_3:33034758-33034777 | Msa0808550:intron | 20.0% |
| !!! | TCATATTGCTATTACTATAT+TGG | + | chr5_3:33034813-33034832 | Msa0808550:intron | 20.0% |
| !! | AGTTAATCATCTTTATTCAA+AGG | - | chr5_3:33035146-33035165 | None:intergenic | 20.0% |
| !! | ATCCTAATGTTATTCTTTAT+AGG | + | chr5_3:33036084-33036103 | Msa0808550:intron | 20.0% |
| !! | ACATCAAAAGAAAGTAAAAA+AGG | - | chr5_3:33036236-33036255 | None:intergenic | 20.0% |
| !! | ATTGCAAAAATAATGTAGTT+AGG | - | chr5_3:33036802-33036821 | None:intergenic | 20.0% |
| !!! | CAATATTTTTTCATCTTTAG+AGG | + | chr5_3:33036876-33036895 | Msa0808550:three_prime_UTR | 20.0% |
| !!! | ACTGTTAACTTGATTTTCTT+GGG | - | chr5_3:33033070-33033089 | None:intergenic | 25.0% |
| !!! | TTCTAGAATATGCAAAATCA+AGG | - | chr5_3:33033159-33033178 | None:intergenic | 25.0% |
| !!! | ATTTTGCATATTCTAGAAGA+AGG | + | chr5_3:33033161-33033180 | Msa0808550:CDS | 25.0% |
| !!! | TTTTGCATATTCTAGAAGAA+GGG | + | chr5_3:33033162-33033181 | Msa0808550:CDS | 25.0% |
| ! | AAAATAAAAAACTCCAAGGA+TGG | - | chr5_3:33033300-33033319 | None:intergenic | 25.0% |
| !! | ATAATTATATGTATCGGTGT+CGG | - | chr5_3:33033413-33033432 | None:intergenic | 25.0% |
| ! | GTCAACACTGATAATAATTT+AGG | - | chr5_3:33033454-33033473 | None:intergenic | 25.0% |
| !! | GTTTCTTTTATAATGGTCTT+TGG | + | chr5_3:33033968-33033987 | Msa0808550:intron | 25.0% |
| ! | TCTTTGGATGTTTGTTTATA+GGG | + | chr5_3:33033984-33034003 | Msa0808550:intron | 25.0% |
| ! | TGATTCATTGTGTGAAAATT+GGG | + | chr5_3:33034014-33034033 | Msa0808550:intron | 25.0% |
| !! | TTTGAAGTTTCTTAAAAGTC+GGG | + | chr5_3:33034049-33034068 | Msa0808550:intron | 25.0% |
| ! | GAGCATTATACACAAATAAA+AGG | + | chr5_3:33034263-33034282 | Msa0808550:CDS | 25.0% |
| ! | TTCGCTTAAAGTTTATTTGA+AGG | + | chr5_3:33034572-33034591 | Msa0808550:CDS | 25.0% |
| ! | ATTAATCTATACCTCAGTTA+AGG | + | chr5_3:33034872-33034891 | Msa0808550:intron | 25.0% |
| ! | TTTGTCATAATTTGAATGCT+AGG | + | chr5_3:33034897-33034916 | Msa0808550:intron | 25.0% |
| ! | TGACTGGTAAATATTGAAAT+CGG | - | chr5_3:33035317-33035336 | None:intergenic | 25.0% |
| ! | TTAAATTATCAAATCACTCC+AGG | + | chr5_3:33035387-33035406 | Msa0808550:intron | 25.0% |
| ! | TAAAATAATCTGATACATCC+TGG | - | chr5_3:33035408-33035427 | None:intergenic | 25.0% |
| ! | TGTTTATAGTCCCTTTAAAT+TGG | + | chr5_3:33035453-33035472 | Msa0808550:intron | 25.0% |
| ! | GTTTATAGTCCCTTTAAATT+GGG | + | chr5_3:33035454-33035473 | Msa0808550:intron | 25.0% |
| !! | CTAACCAATTTTCTTTTACT+CGG | - | chr5_3:33035665-33035684 | None:intergenic | 25.0% |
| ! | TTGTAGTTAAACTACAGATA+TGG | - | chr5_3:33035875-33035894 | None:intergenic | 25.0% |
| ! | AGCCTATAAAGAATAACATT+AGG | - | chr5_3:33036089-33036108 | None:intergenic | 25.0% |
| ! | TCGTAACAAATAACATTGTA+AGG | - | chr5_3:33036112-33036131 | None:intergenic | 25.0% |
| !! | TTACAATGTTATTTGTTACG+AGG | + | chr5_3:33036111-33036130 | Msa0808550:CDS | 25.0% |
| !!! | TGATTTGCTCAATTTATTAG+CGG | + | chr5_3:33036350-33036369 | Msa0808550:intron | 25.0% |
| !! | ATGAATTTTGTATGGTTGAT+TGG | + | chr5_3:33036459-33036478 | Msa0808550:intron | 25.0% |
| !! | TGAATTTTGTATGGTTGATT+GGG | + | chr5_3:33036460-33036479 | Msa0808550:intron | 25.0% |
| !!! | ACTTTAAAGCTCTATGAAAA+TGG | + | chr5_3:33036591-33036610 | Msa0808550:CDS | 25.0% |
| ! | AGATAAAGGAAATATTCCAT+TGG | - | chr5_3:33036720-33036739 | None:intergenic | 25.0% |
| ! | AGAATGACTTAGAAAGATAA+AGG | - | chr5_3:33036734-33036753 | None:intergenic | 25.0% |
| ! | TTATCTTTCTAAGTCATTCT+TGG | + | chr5_3:33036734-33036753 | Msa0808550:three_prime_UTR | 25.0% |
| !! | TCAATGAAATGAAAGTGCTA+TGG | - | chr5_3:33032775-33032794 | None:intergenic | 30.0% |
| AATAAACTTAGTGGGATATC+AGG | - | chr5_3:33032920-33032939 | None:intergenic | 30.0% | |
| CCATGATCAATAAACTTAGT+GGG | - | chr5_3:33032928-33032947 | None:intergenic | 30.0% | |
| TCCATGATCAATAAACTTAG+TGG | - | chr5_3:33032929-33032948 | None:intergenic | 30.0% | |
| !! | CACTGTTAACTTGATTTTCT+TGG | - | chr5_3:33033071-33033090 | None:intergenic | 30.0% |
| ATTGTTTATGTTTCCATCCT+TGG | + | chr5_3:33033284-33033303 | Msa0808550:intron | 30.0% | |
| !! | TTCTTTGATCTGTTTTTCCT+AGG | + | chr5_3:33033568-33033587 | Msa0808550:intron | 30.0% |
| TTGTTAAGTAGTGGTATGAA+AGG | + | chr5_3:33033751-33033770 | Msa0808550:intron | 30.0% | |
| !! | GTGTATTTTTGTCATGGATA+TGG | + | chr5_3:33033843-33033862 | Msa0808550:CDS | 30.0% |
| GTCTTTGGATGTTTGTTTAT+AGG | + | chr5_3:33033983-33034002 | Msa0808550:intron | 30.0% | |
| GTGATTCATTGTGTGAAAAT+TGG | + | chr5_3:33034013-33034032 | Msa0808550:intron | 30.0% | |
| TTGAAGTTTCTTAAAAGTCG+GGG | + | chr5_3:33034050-33034069 | Msa0808550:intron | 30.0% | |
| TTCGACGAAAGTTACAATTT+CGG | + | chr5_3:33034078-33034097 | Msa0808550:intron | 30.0% | |
| AATGAGCTTACTTTACACAT+TGG | - | chr5_3:33034633-33034652 | None:intergenic | 30.0% | |
| ATAATGAAGTTGTTGAGCAT+TGG | - | chr5_3:33034673-33034692 | None:intergenic | 30.0% | |
| TAATCTGTTTGCTTACTAAC+TGG | + | chr5_3:33034845-33034864 | Msa0808550:intron | 30.0% | |
| ACTTTCCTATAGAAAGGTTT+GGG | - | chr5_3:33034926-33034945 | None:intergenic | 30.0% | |
| AACTTTCCTATAGAAAGGTT+TGG | - | chr5_3:33034927-33034946 | None:intergenic | 30.0% | |
| TTCCTTTAACGTTGTAACTT+AGG | + | chr5_3:33034986-33035005 | Msa0808550:intron | 30.0% | |
| TCCTTTAACGTTGTAACTTA+GGG | + | chr5_3:33034987-33035006 | Msa0808550:intron | 30.0% | |
| TTAGTTCCTTGTAATATGTG+AGG | + | chr5_3:33035097-33035116 | Msa0808550:intron | 30.0% | |
| ! | AGAATGCTTTACTGATTATC+TGG | + | chr5_3:33035228-33035247 | Msa0808550:intron | 30.0% |
| GACTGGTAAATATTGAAATC+GGG | - | chr5_3:33035316-33035335 | None:intergenic | 30.0% | |
| TTAGAAATGCATAGTATGAC+TGG | - | chr5_3:33035333-33035352 | None:intergenic | 30.0% | |
| AGAACCGAGTAAAAGAAAAT+TGG | + | chr5_3:33035658-33035677 | Msa0808550:CDS | 30.0% | |
| GAAATCATATGCAAGAGAAA+TGG | - | chr5_3:33035714-33035733 | None:intergenic | 30.0% | |
| TTGAATTTACTCTCCAGATA+TGG | + | chr5_3:33035817-33035836 | Msa0808550:intron | 30.0% | |
| ATATTTAGTGCAACACGTAA+AGG | - | chr5_3:33035914-33035933 | None:intergenic | 30.0% | |
| AGGCAATACAACATTGTTTA+AGG | - | chr5_3:33036000-33036019 | None:intergenic | 30.0% | |
| AACCAAAATGTTGCAATACA+AGG | - | chr5_3:33036020-33036039 | None:intergenic | 30.0% | |
| AATTGAGTCAAAAGTAGAGA+AGG | + | chr5_3:33036183-33036202 | Msa0808550:CDS | 30.0% | |
| ! | TACAGAAATTTGCTCACTAA+TGG | - | chr5_3:33036546-33036565 | None:intergenic | 30.0% |
| ACAGCTTGAATTATATCATC+AGG | - | chr5_3:33036642-33036661 | None:intergenic | 30.0% | |
| ! | AGTTAAGTGAGATTTTCCAA+TGG | + | chr5_3:33036701-33036720 | Msa0808550:exon | 30.0% |
| GCAAAAATAATGTAGTTAGG+AGG | - | chr5_3:33036799-33036818 | None:intergenic | 30.0% | |
| ! | TTTTTGCAATTCAATTTGGG+TGG | + | chr5_3:33036812-33036831 | Msa0808550:intron | 30.0% |
| ATGTTCACATATCACAATGA+AGG | - | chr5_3:33036854-33036873 | None:intergenic | 30.0% | |
| AATGCACAAATTGAAACTGA+AGG | - | chr5_3:33036929-33036948 | None:intergenic | 30.0% | |
| CCCACTAAGTTTATTGATCA+TGG | + | chr5_3:33032925-33032944 | Msa0808550:exon | 35.0% | |
| TTGTTGTATATGGGAGAGAA+AGG | - | chr5_3:33033001-33033020 | None:intergenic | 35.0% | |
| TGCAAAGGGTTGTTGTATAT+GGG | - | chr5_3:33033010-33033029 | None:intergenic | 35.0% | |
| ! | AAGGTAGTTGATTCTGCAAA+GGG | - | chr5_3:33033024-33033043 | None:intergenic | 35.0% |
| ! | AAAGGTAGTTGATTCTGCAA+AGG | - | chr5_3:33033025-33033044 | None:intergenic | 35.0% |
| !! | AAGAGAAAAGCACCAATTGA+AGG | + | chr5_3:33033097-33033116 | Msa0808550:CDS | 35.0% |
| GCTTGATCATTGCTTGTTTA+AGG | + | chr5_3:33033216-33033235 | Msa0808550:CDS | 35.0% | |
| TGGTCAAGATGAAAAGTCAA+AGG | - | chr5_3:33033250-33033269 | None:intergenic | 35.0% | |
| ! | TTTTCATCTTGACCAATGTC+AGG | + | chr5_3:33033255-33033274 | Msa0808550:intron | 35.0% |
| !!! | TGGAAATTTTTTGCAAGAGC+TGG | + | chr5_3:33033787-33033806 | Msa0808550:CDS | 35.0% |
| AAATACACAGATGCCTTGAT+TGG | - | chr5_3:33033831-33033850 | None:intergenic | 35.0% | |
| !! | GCATCTGTGTATTTTTGTCA+TGG | + | chr5_3:33033837-33033856 | Msa0808550:CDS | 35.0% |
| ACATGCACATTCTTCTTTGA+AGG | + | chr5_3:33033870-33033889 | Msa0808550:CDS | 35.0% | |
| CCTATGTTGTCTGATAACAT+AGG | - | chr5_3:33033905-33033924 | None:intergenic | 35.0% | |
| CCTATGTTATCAGACAACAT+AGG | + | chr5_3:33033902-33033921 | Msa0808550:intron | 35.0% | |
| TGAAGTTTCTTAAAAGTCGG+GGG | + | chr5_3:33034051-33034070 | Msa0808550:intron | 35.0% | |
| TCGACGAAAGTTACAATTTC+GGG | + | chr5_3:33034079-33034098 | Msa0808550:intron | 35.0% | |
| !!! | TTTTTTATTCAGGTGTTGCG+AGG | + | chr5_3:33034126-33034145 | Msa0808550:intron | 35.0% |
| TCAACAGACACACCTATAAT+CGG | + | chr5_3:33034419-33034438 | Msa0808550:intron | 35.0% | |
| ATTTGAAGGAGCCAGATAAT+TGG | + | chr5_3:33034586-33034605 | Msa0808550:CDS | 35.0% | |
| TTTGAAGGAGCCAGATAATT+GGG | + | chr5_3:33034587-33034606 | Msa0808550:CDS | 35.0% | |
| !! | GAGCATTGGTAACAATACAA+AGG | - | chr5_3:33034659-33034678 | None:intergenic | 35.0% |
| TATGACAAAGTCCTTAACTG+AGG | - | chr5_3:33034886-33034905 | None:intergenic | 35.0% | |
| CGTTCAACTTTCCTATAGAA+AGG | - | chr5_3:33034932-33034951 | None:intergenic | 35.0% | |
| ATCATGTGAGATGTGATACA+TGG | + | chr5_3:33034959-33034978 | Msa0808550:intron | 35.0% | |
| TCATGTGAGATGTGATACAT+GGG | + | chr5_3:33034960-33034979 | Msa0808550:intron | 35.0% | |
| TCCCTAAGTTACAACGTTAA+AGG | - | chr5_3:33034991-33035010 | None:intergenic | 35.0% | |
| GTCATGCTTTCTGTGAAATA+AGG | - | chr5_3:33035038-33035057 | None:intergenic | 35.0% | |
| AAACCCAAACTTCGTGTAAA+GGG | - | chr5_3:33035188-33035207 | None:intergenic | 35.0% | |
| AAAACCCAAACTTCGTGTAA+AGG | - | chr5_3:33035189-33035208 | None:intergenic | 35.0% | |
| AAAGCTATCATCTCACATGT+CGG | - | chr5_3:33035267-33035286 | None:intergenic | 35.0% | |
| !! | AAGCATACTCCTTTAAGATG+CGG | + | chr5_3:33035351-33035370 | Msa0808550:intron | 35.0% |
| TAACATGATCCGCATCTTAA+AGG | - | chr5_3:33035363-33035382 | None:intergenic | 35.0% | |
| TTAAGATGCGGATCATGTTA+AGG | + | chr5_3:33035363-33035382 | Msa0808550:intron | 35.0% | |
| CTGATACGTCCCAATTTAAA+GGG | - | chr5_3:33035466-33035485 | None:intergenic | 35.0% | |
| ACTGATACGTCCCAATTTAA+AGG | - | chr5_3:33035467-33035486 | None:intergenic | 35.0% | |
| ! | TGGCGACAATGTTGATATTT+TGG | - | chr5_3:33035855-33035874 | None:intergenic | 35.0% |
| ! | ACAACATTGTTTAAGGTGCA+TGG | - | chr5_3:33035993-33036012 | None:intergenic | 35.0% |
| ! | TGCCTTGTATTGCAACATTT+TGG | + | chr5_3:33036015-33036034 | Msa0808550:intron | 35.0% |
| GATAATCCACGACTTAAAAC+AGG | + | chr5_3:33036133-33036152 | Msa0808550:CDS | 35.0% | |
| ! | AAACAGGCATGGAACTTTTA+AGG | + | chr5_3:33036149-33036168 | Msa0808550:CDS | 35.0% |
| ! | AACAGGCATGGAACTTTTAA+GGG | + | chr5_3:33036150-33036169 | Msa0808550:CDS | 35.0% |
| !! | GCACCATTATTGATTCTTCA+TGG | + | chr5_3:33036498-33036517 | Msa0808550:CDS | 35.0% |
| GCTCCATGAAGAATCAATAA+TGG | - | chr5_3:33036504-33036523 | None:intergenic | 35.0% | |
| GTATGAAAATGCATCTAGCA+AGG | + | chr5_3:33036563-33036582 | Msa0808550:CDS | 35.0% | |
| ! | AAATGGTTACCACTGCATTT+TGG | + | chr5_3:33036608-33036627 | Msa0808550:CDS | 35.0% |
| TTCATGATGACATTGTCTCA+TGG | + | chr5_3:33036661-33036680 | Msa0808550:CDS | 35.0% | |
| CATGATCGGAAGTTCCAAAA+TGG | - | chr5_3:33032750-33032769 | None:intergenic | 40.0% | |
| !!! | CATTTTGGAACTTCCGATCA+TGG | + | chr5_3:33032748-33032767 | Msa0808550:five_prime_UTR | 40.0% |
| ! | AAAGTGCTATGGTCCATGAT+CGG | - | chr5_3:33032764-33032783 | None:intergenic | 40.0% |
| AGGATGTGAGGTTCTTTGAT+TGG | - | chr5_3:33032973-33032992 | None:intergenic | 40.0% | |
| ! | AGAAAGGTATGAAGGATGTG+AGG | - | chr5_3:33032985-33033004 | None:intergenic | 40.0% |
| ! | TATGGGAGAGAAAGGTATGA+AGG | - | chr5_3:33032993-33033012 | None:intergenic | 40.0% |
| CTGCAAAGGGTTGTTGTATA+TGG | - | chr5_3:33033011-33033030 | None:intergenic | 40.0% | |
| TCTTCACTCACACCTTCAAT+TGG | - | chr5_3:33033112-33033131 | None:intergenic | 40.0% | |
| ! | AACAATCTGAAGCCTGACAT+TGG | - | chr5_3:33033270-33033289 | None:intergenic | 40.0% |
| ! | CTGAGGAGTATGTGTTTCAT+AGG | + | chr5_3:33033478-33033497 | Msa0808550:intron | 40.0% |
| GGAGTATGTGTTTCATAGGT+TGG | + | chr5_3:33033482-33033501 | Msa0808550:intron | 40.0% | |
| AGTGGTATGAAAGGAATTCG+AGG | + | chr5_3:33033760-33033779 | Msa0808550:intron | 40.0% | |
| GTGGTATGAAAGGAATTCGA+GGG | + | chr5_3:33033761-33033780 | Msa0808550:intron | 40.0% | |
| TGGTATGAAAGGAATTCGAG+GGG | + | chr5_3:33033762-33033781 | Msa0808550:CDS | 40.0% | |
| CATTGTGTGAAAATTGGGTG+TGG | + | chr5_3:33034019-33034038 | Msa0808550:intron | 40.0% | |
| GAAGTTTCTTAAAAGTCGGG+GGG | + | chr5_3:33034052-33034071 | Msa0808550:intron | 40.0% | |
| AAGTTTCTTAAAAGTCGGGG+GGG | + | chr5_3:33034053-33034072 | Msa0808550:intron | 40.0% | |
| CGACGAAAGTTACAATTTCG+GGG | + | chr5_3:33034080-33034099 | Msa0808550:intron | 40.0% | |
| GACGAAAGTTACAATTTCGG+GGG | + | chr5_3:33034081-33034100 | Msa0808550:intron | 40.0% | |
| !!! | TGGGTATGCTGTTTTTGCTA+TGG | + | chr5_3:33034163-33034182 | Msa0808550:CDS | 40.0% |
| !! | GTTTTTGCTATGGACTATCC+AGG | + | chr5_3:33034173-33034192 | Msa0808550:CDS | 40.0% |
| TCGACAAGATCATCGAAGTT+TGG | - | chr5_3:33034233-33034252 | None:intergenic | 40.0% | |
| CTGGATAGGTTTCAAAGACA+TGG | + | chr5_3:33034453-33034472 | Msa0808550:intron | 40.0% | |
| CGAGGTAATTCTCTCATATC+AGG | - | chr5_3:33034519-33034538 | None:intergenic | 40.0% | |
| AGAATTACCTCGAGTTCTGT+TGG | + | chr5_3:33034527-33034546 | Msa0808550:CDS | 40.0% | |
| GAATTACCTCGAGTTCTGTT+GGG | + | chr5_3:33034528-33034547 | Msa0808550:CDS | 40.0% | |
| AATTACCTCGAGTTCTGTTG+GGG | + | chr5_3:33034529-33034548 | Msa0808550:CDS | 40.0% | |
| ATCACAGCATCCCAATTATC+TGG | - | chr5_3:33034600-33034619 | None:intergenic | 40.0% | |
| AGCATGACAGAGAAAGAAAC+AGG | + | chr5_3:33035050-33035069 | Msa0808550:intron | 40.0% | |
| GATCCCTTTACACGAAGTTT+GGG | + | chr5_3:33035182-33035201 | Msa0808550:intron | 40.0% | |
| ! | GTTTTCCCAGAAGAGGAAAT+GGG | + | chr5_3:33035204-33035223 | Msa0808550:intron | 40.0% |
| TTCTTCCCATTTCCTCTTCT+GGG | - | chr5_3:33035212-33035231 | None:intergenic | 40.0% | |
| ATTCTTCCCATTTCCTCTTC+TGG | - | chr5_3:33035213-33035232 | None:intergenic | 40.0% | |
| GGACGTATCAGTTTAACAGT+TGG | + | chr5_3:33035475-33035494 | Msa0808550:intron | 40.0% | |
| CGTATCAGTTTAACAGTTGG+AGG | + | chr5_3:33035478-33035497 | Msa0808550:intron | 40.0% | |
| !! | GACTTGCTGATTTGTGTTAC+TGG | + | chr5_3:33035515-33035534 | Msa0808550:intron | 40.0% |
| ! | TTTGGGAAGAGCTTTGCTTT+TGG | - | chr5_3:33035611-33035630 | None:intergenic | 40.0% |
| ! | GTTCAGCAAGGTCTTTGTTT+GGG | - | chr5_3:33035628-33035647 | None:intergenic | 40.0% |
| AGTTCAGCAAGGTCTTTGTT+TGG | - | chr5_3:33035629-33035648 | None:intergenic | 40.0% | |
| AAACAAAGACCTTGCTGAAC+TGG | + | chr5_3:33035628-33035647 | Msa0808550:CDS | 40.0% | |
| TTACTCTCCAGATATGGTTG+TGG | + | chr5_3:33035823-33035842 | Msa0808550:intron | 40.0% | |
| TATGAAGCACAGACATTCGT+CGG | + | chr5_3:33036272-33036291 | Msa0808550:intron | 40.0% | |
| ATGCTGAAACCTATGAAGCA+CGG | - | chr5_3:33036411-33036430 | None:intergenic | 40.0% | |
| ATGGTTGATTGGGTTATGTC+AGG | + | chr5_3:33036470-33036489 | Msa0808550:intron | 40.0% | |
| !! | GTTACCACTGCATTTTGGAA+GGG | + | chr5_3:33036613-33036632 | Msa0808550:CDS | 40.0% |
| !! | TTACCACTGCATTTTGGAAG+GGG | + | chr5_3:33036614-33036633 | Msa0808550:CDS | 40.0% |
| TTGTCTCATGGCTTGATTCT+AGG | + | chr5_3:33036673-33036692 | Msa0808550:CDS | 40.0% | |
| ! | TTTGAAGCACGTATGCTCCT+AGG | + | chr5_3:33033345-33033364 | Msa0808550:intron | 45.0% |
| !! | TATCAGTGTTGACGTGTCTG+AGG | + | chr5_3:33033461-33033480 | Msa0808550:intron | 45.0% |
| TGAAAGGAATTCGAGGGGAT+TGG | + | chr5_3:33033767-33033786 | Msa0808550:CDS | 45.0% | |
| TTGATTGGAGTTCCTGACTC+TGG | - | chr5_3:33033816-33033835 | None:intergenic | 45.0% | |
| AGAGTCAGGAACTCCAATCA+AGG | + | chr5_3:33033815-33033834 | Msa0808550:CDS | 45.0% | |
| !! | GCTATGGACTATCCAGGTTT+TGG | + | chr5_3:33034179-33034198 | Msa0808550:CDS | 45.0% |
| ! | CCTTCTGAAAGTCCAAAACC+TGG | - | chr5_3:33034194-33034213 | None:intergenic | 45.0% |
| !!! | CCAGGTTTTGGACTTTCAGA+AGG | + | chr5_3:33034191-33034210 | Msa0808550:CDS | 45.0% |
| GGACTTTCAGAAGGATTGCA+TGG | + | chr5_3:33034200-33034219 | Msa0808550:CDS | 45.0% | |
| ! | CGGTTTCAAGTGTAGTGTCA+GGG | - | chr5_3:33034339-33034358 | None:intergenic | 45.0% |
| ! | TCGGTTTCAAGTGTAGTGTC+AGG | - | chr5_3:33034340-33034359 | None:intergenic | 45.0% |
| ! | TGTCTGTTGACTGACACACA+TGG | - | chr5_3:33034409-33034428 | None:intergenic | 45.0% |
| ACAGACACACCTATAATCGG+AGG | + | chr5_3:33034422-33034441 | Msa0808550:intron | 45.0% | |
| ! | ACACCTATAATCGGAGGTGT+CGG | + | chr5_3:33034428-33034447 | Msa0808550:intron | 45.0% |
| GGTGACCCAAACCTTTCTAT+AGG | + | chr5_3:33034918-33034937 | Msa0808550:intron | 45.0% | |
| CGAGGACCTCACATATTACA+AGG | - | chr5_3:33035106-33035125 | None:intergenic | 45.0% | |
| GCTAGTAGACAAAGTCTACG+AGG | - | chr5_3:33035124-33035143 | None:intergenic | 45.0% | |
| CGATCCCTTTACACGAAGTT+TGG | + | chr5_3:33035181-33035200 | Msa0808550:intron | 45.0% | |
| !! | AGTTTGGGTTTTCCCAGAAG+AGG | + | chr5_3:33035197-33035216 | Msa0808550:intron | 45.0% |
| ! | GGTTTTCCCAGAAGAGGAAA+TGG | + | chr5_3:33035203-33035222 | Msa0808550:intron | 45.0% |
| ACCACCTGATGCAGTAATGA+AGG | + | chr5_3:33035559-33035578 | Msa0808550:CDS | 45.0% | |
| AACGCCTTCATTACTGCATC+AGG | - | chr5_3:33035566-33035585 | None:intergenic | 45.0% | |
| GAAGTCTCCACAACCATATC+TGG | - | chr5_3:33035833-33035852 | None:intergenic | 45.0% | |
| ! | GTTTAAGGTGCATGGCTAGT+AGG | - | chr5_3:33035985-33036004 | None:intergenic | 45.0% |
| TCCACGACTTAAAACAGGCA+TGG | + | chr5_3:33036138-33036157 | Msa0808550:CDS | 45.0% | |
| !! | TCCATGCCTGTTTTAAGTCG+TGG | - | chr5_3:33036142-33036161 | None:intergenic | 45.0% |
| GACGAATGTCTGTGCTTCAT+AGG | - | chr5_3:33036273-33036292 | None:intergenic | 45.0% | |
| TGTCTGTATCCGTGCTTCAT+AGG | + | chr5_3:33036399-33036418 | Msa0808550:intron | 45.0% | |
| ! | GGTTACCACTGCATTTTGGA+AGG | + | chr5_3:33036612-33036631 | Msa0808550:CDS | 45.0% |
| GCACGTATGCTCCTAGGATT+AGG | + | chr5_3:33033351-33033370 | Msa0808550:intron | 50.0% | |
| CTCAGAACACGCCTAATCCT+AGG | - | chr5_3:33033365-33033384 | None:intergenic | 50.0% | |
| CTAGGATTAGGCGTGTTCTG+AGG | + | chr5_3:33033363-33033382 | Msa0808550:intron | 50.0% | |
| ! | TTTTCCTAGGATGCTCCTGC+TGG | + | chr5_3:33033581-33033600 | Msa0808550:intron | 50.0% |
| TCTTCTGCTCTGATTCCAGC+AGG | - | chr5_3:33033599-33033618 | None:intergenic | 50.0% | |
| CGAGGAGAATTGCTGCATCT+GGG | + | chr5_3:33034144-33034163 | Msa0808550:CDS | 50.0% | |
| AGTTCTGTTGGGGCAGTCAA+TGG | + | chr5_3:33034539-33034558 | Msa0808550:CDS | 50.0% | |
| GTTCTGTTGGGGCAGTCAAT+GGG | + | chr5_3:33034540-33034559 | Msa0808550:CDS | 50.0% | |
| GCCTTCATTACTGCATCAGG+TGG | - | chr5_3:33035563-33035582 | None:intergenic | 50.0% | |
| ! | CTCTGAAAGCCAGTTCAGCA+AGG | - | chr5_3:33035640-33035659 | None:intergenic | 50.0% |
| GCACAGACATTCGTCGGATT+AGG | + | chr5_3:33036278-33036297 | Msa0808550:intron | 50.0% | |
| ACGGATACAGACACGTACAC+CGG | - | chr5_3:33036392-33036411 | None:intergenic | 50.0% | |
| TCTTCATGGAGCAGCAGACA+AGG | + | chr5_3:33036512-33036531 | Msa0808550:CDS | 50.0% | |
| GTTCCCCTTCCAAAATGCAG+TGG | - | chr5_3:33036620-33036639 | None:intergenic | 50.0% | |
| !! | GATTCCAGCAGGAGCATCCT+AGG | - | chr5_3:33033588-33033607 | None:intergenic | 55.0% |
| AAGAGCTGGATGCCAGAGTC+AGG | + | chr5_3:33033801-33033820 | Msa0808550:CDS | 55.0% | |
| GCGAGGAGAATTGCTGCATC+TGG | + | chr5_3:33034143-33034162 | Msa0808550:CDS | 55.0% | |
| ! | GCACCGACACCTCCGATTAT+AGG | - | chr5_3:33034434-33034453 | None:intergenic | 55.0% |
| !! | ATAATCGGAGGTGTCGGTGC+TGG | + | chr5_3:33034434-33034453 | Msa0808550:intron | 55.0% |
| TGTTGGGGCAGTCAATGGGT+GGG | + | chr5_3:33034544-33034563 | Msa0808550:CDS | 55.0% | |
| TGTCGAAACGTGTCCGACAG+CGG | - | chr5_3:33036310-33036329 | None:intergenic | 55.0% | |
| GACTGCCCCAACAGAACTCG+AGG | - | chr5_3:33034537-33034556 | None:intergenic | 60.0% | |
| CTGTTGGGGCAGTCAATGGG+TGG | + | chr5_3:33034543-33034562 | Msa0808550:CDS | 60.0% | |
| GTTGGGGCAGTCAATGGGTG+GGG | + | chr5_3:33034545-33034564 | Msa0808550:CDS | 60.0% | |
| GATTAGGCGTGTCCCGCTGT+CGG | + | chr5_3:33036294-33036313 | Msa0808550:intron | 60.0% | |
| GTCGAAACGTGTCCGACAGC+GGG | - | chr5_3:33036309-33036328 | None:intergenic | 60.0% | |
| !! | CGGAGGTGTCGGTGCTGGAT+AGG | + | chr5_3:33034439-33034458 | Msa0808550:intron | 65.0% |
| ! | CGGTGTCAGCGTGTCGTGTC+CGG | + | chr5_3:33036370-33036389 | Msa0808550:intron | 65.0% |
| GGGGCAGTCAATGGGTGGGG+CGG | + | chr5_3:33034548-33034567 | Msa0808550:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 33032739 | 33036949 | 33032739 | ID=Msa0808550;Name=Msa0808550 |
| chr5_3 | mRNA | 33032739 | 33036949 | 33032739 | ID=Msa0808550-mRNA-1;Parent=Msa0808550;Name=Msa0808550-mRNA-1;_AED=0.22;_eAED=0.22;_QI=205|0.87|0.88|1|0.87|0.77|9|190|400 |
| chr5_3 | exon | 33032739 | 33033237 | 33032739 | ID=Msa0808550-mRNA-1:exon:10746;Parent=Msa0808550-mRNA-1 |
| chr5_3 | exon | 33033590 | 33033634 | 33033590 | ID=Msa0808550-mRNA-1:exon:10747;Parent=Msa0808550-mRNA-1 |
| chr5_3 | exon | 33033762 | 33033891 | 33033762 | ID=Msa0808550-mRNA-1:exon:10748;Parent=Msa0808550-mRNA-1 |
| chr5_3 | exon | 33034138 | 33034284 | 33034138 | ID=Msa0808550-mRNA-1:exon:10749;Parent=Msa0808550-mRNA-1 |
| chr5_3 | exon | 33034511 | 33034641 | 33034511 | ID=Msa0808550-mRNA-1:exon:10750;Parent=Msa0808550-mRNA-1 |
| chr5_3 | exon | 33035542 | 33035679 | 33035542 | ID=Msa0808550-mRNA-1:exon:10751;Parent=Msa0808550-mRNA-1 |
| chr5_3 | exon | 33036106 | 33036204 | 33036106 | ID=Msa0808550-mRNA-1:exon:10752;Parent=Msa0808550-mRNA-1 |
| chr5_3 | exon | 33036492 | 33036776 | 33036492 | ID=Msa0808550-mRNA-1:exon:10753;Parent=Msa0808550-mRNA-1 |
| chr5_3 | exon | 33036826 | 33036949 | 33036826 | ID=Msa0808550-mRNA-1:exon:10754;Parent=Msa0808550-mRNA-1 |
| chr5_3 | five_prime_UTR | 33032739 | 33032943 | 33032739 | ID=Msa0808550-mRNA-1:five_prime_utr;Parent=Msa0808550-mRNA-1 |
| chr5_3 | CDS | 33032944 | 33033237 | 33032944 | ID=Msa0808550-mRNA-1:cds;Parent=Msa0808550-mRNA-1 |
| chr5_3 | CDS | 33033590 | 33033634 | 33033590 | ID=Msa0808550-mRNA-1:cds;Parent=Msa0808550-mRNA-1 |
| chr5_3 | CDS | 33033762 | 33033891 | 33033762 | ID=Msa0808550-mRNA-1:cds;Parent=Msa0808550-mRNA-1 |
| chr5_3 | CDS | 33034138 | 33034284 | 33034138 | ID=Msa0808550-mRNA-1:cds;Parent=Msa0808550-mRNA-1 |
| chr5_3 | CDS | 33034511 | 33034641 | 33034511 | ID=Msa0808550-mRNA-1:cds;Parent=Msa0808550-mRNA-1 |
| chr5_3 | CDS | 33035542 | 33035679 | 33035542 | ID=Msa0808550-mRNA-1:cds;Parent=Msa0808550-mRNA-1 |
| chr5_3 | CDS | 33036106 | 33036204 | 33036106 | ID=Msa0808550-mRNA-1:cds;Parent=Msa0808550-mRNA-1 |
| chr5_3 | CDS | 33036492 | 33036710 | 33036492 | ID=Msa0808550-mRNA-1:cds;Parent=Msa0808550-mRNA-1 |
| chr5_3 | three_prime_UTR | 33036711 | 33036776 | 33036711 | ID=Msa0808550-mRNA-1:three_prime_utr;Parent=Msa0808550-mRNA-1 |
| chr5_3 | three_prime_UTR | 33036826 | 33036949 | 33036826 | ID=Msa0808550-mRNA-1:three_prime_utr;Parent=Msa0808550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
