Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849330 | XP_003614638.1 | 88.222 | 433 | 13 | 2 | 1 | 433 | 1 | 395 | 0.0 | 769 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849330 | sp|Q9C942|CSE_ARATH | 31.940 | 335 | 187 | 5 | 103 | 430 | 24 | 324 | 1.59e-51 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849330 | G7K1K2 | 88.222 | 433 | 13 | 2 | 1 | 433 | 1 | 395 | 0.0 | 769 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011850 | Msa0849330 | 0.805506 | 1.291524e-49 | -8.615850e-47 |
| Msa0076670 | Msa0849330 | 0.802103 | 6.574840e-49 | -8.615850e-47 |
| Msa0114540 | Msa0849330 | -0.815228 | 1.029188e-51 | -8.615850e-47 |
| Msa0626280 | Msa0849330 | 0.803137 | 4.023420e-49 | -8.615850e-47 |
| Msa0648520 | Msa0849330 | 0.810468 | 1.135516e-50 | -8.615850e-47 |
| Msa0670980 | Msa0849330 | 0.801569 | 8.465888e-49 | -8.615850e-47 |
| Msa0730270 | Msa0849330 | 0.897214 | 1.746945e-76 | -8.615850e-47 |
| Msa0743680 | Msa0849330 | 0.811169 | 8.006442e-51 | -8.615850e-47 |
| Msa0754680 | Msa0849330 | 0.817776 | 2.767573e-52 | -8.615850e-47 |
| Msa0770580 | Msa0849330 | 0.894218 | 3.032675e-75 | -8.615850e-47 |
| Msa0784620 | Msa0849330 | 0.828782 | 7.422650e-55 | -8.615850e-47 |
| Msa0797350 | Msa0849330 | 0.806591 | 7.635915e-50 | -8.615850e-47 |
| Msa0799060 | Msa0849330 | 0.804441 | 2.157362e-49 | -8.615850e-47 |
| Msa0808550 | Msa0849330 | 0.866152 | 3.513235e-65 | -8.615850e-47 |
| Msa0824730 | Msa0849330 | 0.808296 | 3.321551e-50 | -8.615850e-47 |
| Msa0142470 | Msa0849330 | 0.824599 | 7.396245e-54 | -8.615850e-47 |
| Msa0145980 | Msa0849330 | -0.820004 | 8.625073e-53 | -8.615850e-47 |
| Msa0227510 | Msa0849330 | 0.817589 | 3.049476e-52 | -8.615850e-47 |
| Msa0380920 | Msa0849330 | 0.827278 | 1.708963e-54 | -8.615850e-47 |
| Msa0388030 | Msa0849330 | -0.804011 | 2.650375e-49 | -8.615850e-47 |
| Msa0422500 | Msa0849330 | 0.800548 | 1.368463e-48 | -8.615850e-47 |
| Msa0430820 | Msa0849330 | 0.829689 | 4.472211e-55 | -8.615850e-47 |
| Msa0450350 | Msa0849330 | 0.806927 | 6.484841e-50 | -8.615850e-47 |
| Msa0256510 | Msa0849330 | 0.828266 | 9.893271e-55 | -8.615850e-47 |
| Msa0285940 | Msa0849330 | 0.817003 | 4.130708e-52 | -8.615850e-47 |
| Msa0335040 | Msa0849330 | 0.818318 | 2.086230e-52 | -8.615850e-47 |
| Msa0356890 | Msa0849330 | -0.836520 | 8.918244e-57 | -8.615850e-47 |
| Msa0511250 | Msa0849330 | 0.803078 | 4.138470e-49 | -8.615850e-47 |
| Msa0517490 | Msa0849330 | 0.812303 | 4.536279e-51 | -8.615850e-47 |
| Msa0547400 | Msa0849330 | 0.803072 | 4.151151e-49 | -8.615850e-47 |
| Msa0569020 | Msa0849330 | 0.819039 | 1.431590e-52 | -8.615850e-47 |
| Msa0602120 | Msa0849330 | 0.801553 | 8.528692e-49 | -8.615850e-47 |
| Msa0849330 | Msa0853860 | 0.831155 | 1.959058e-55 | -8.615850e-47 |
| Msa0849330 | Msa0863800 | 0.824173 | 9.314307e-54 | -8.615850e-47 |
| Msa0849330 | Msa0908170 | 0.803283 | 3.753314e-49 | -8.615850e-47 |
| Msa0849330 | Msa1020710 | 0.817025 | 4.083451e-52 | -8.615850e-47 |
| Msa0849330 | Msa1127770 | 0.821767 | 3.389066e-53 | -8.615850e-47 |
| Msa0849330 | Msa1143620 | 0.822693 | 2.066316e-53 | -8.615850e-47 |
| Msa0849330 | Msa1213020 | 0.807071 | 6.046751e-50 | -8.615850e-47 |
| Msa0849330 | Msa1215460 | 0.814379 | 1.587911e-51 | -8.615850e-47 |
| Msa0849330 | Msa1249920 | 0.802739 | 4.863542e-49 | -8.615850e-47 |
| Msa0849330 | Msa1270740 | 0.808859 | 2.518363e-50 | -8.615850e-47 |
| Msa0849330 | Msa1300090 | 0.817417 | 3.333060e-52 | -8.615850e-47 |
| Msa0849330 | Msa1358870 | -0.804548 | 2.049146e-49 | -8.615850e-47 |
| Msa0849330 | Msa1398860 | 0.829192 | 5.907317e-55 | -8.615850e-47 |
| Msa0849330 | Msa1408790 | 0.802036 | 6.787976e-49 | -8.615850e-47 |
| Msa0849330 | Msa1445790 | 0.827182 | 1.801598e-54 | -8.615850e-47 |
| Msa0849330 | Msa1459390 | 0.828642 | 8.026316e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849330 | MtrunA17_Chr5g0423541 | 88.222 | 433 | 13 | 2 | 1 | 433 | 1 | 395 | 0.0 | 769 |
| Msa0849330 | MtrunA17_Chr1g0209741 | 63.048 | 433 | 104 | 6 | 1 | 431 | 1 | 379 | 0.0 | 551 |
| Msa0849330 | MtrunA17_Chr7g0215451 | 52.575 | 369 | 136 | 3 | 59 | 427 | 7 | 336 | 8.39e-134 | 388 |
| Msa0849330 | MtrunA17_Chr6g0457581 | 49.326 | 371 | 149 | 3 | 59 | 429 | 6 | 337 | 2.44e-128 | 374 |
| Msa0849330 | MtrunA17_Chr6g0460121 | 52.698 | 315 | 115 | 2 | 115 | 429 | 20 | 300 | 2.16e-119 | 350 |
| Msa0849330 | MtrunA17_Chr6g0484431 | 46.965 | 313 | 126 | 4 | 57 | 368 | 8 | 281 | 3.39e-102 | 305 |
| Msa0849330 | MtrunA17_Chr1g0212901 | 40.557 | 323 | 158 | 2 | 108 | 430 | 6 | 294 | 6.35e-86 | 265 |
| Msa0849330 | MtrunA17_Chr1g0195501 | 40.952 | 315 | 152 | 2 | 115 | 429 | 11 | 291 | 2.09e-81 | 253 |
| Msa0849330 | MtrunA17_Chr7g0269371 | 39.062 | 320 | 160 | 2 | 108 | 427 | 4 | 288 | 1.56e-78 | 247 |
| Msa0849330 | MtrunA17_Chr4g0047891 | 35.048 | 311 | 169 | 1 | 120 | 430 | 47 | 324 | 2.74e-64 | 209 |
| Msa0849330 | MtrunA17_Chr4g0071671 | 33.134 | 335 | 183 | 5 | 103 | 430 | 15 | 315 | 5.26e-52 | 177 |
| Msa0849330 | MtrunA17_Chr1g0199771 | 30.868 | 311 | 178 | 5 | 118 | 426 | 37 | 312 | 3.41e-47 | 165 |
| Msa0849330 | MtrunA17_Chr3g0140391 | 28.617 | 311 | 179 | 8 | 120 | 429 | 103 | 371 | 7.77e-32 | 124 |
| Msa0849330 | MtrunA17_Chr6g0479331 | 29.969 | 327 | 166 | 10 | 114 | 429 | 116 | 390 | 1.08e-28 | 116 |
| Msa0849330 | MtrunA17_Chr1g0209761 | 68.571 | 70 | 22 | 0 | 362 | 431 | 12 | 81 | 9.96e-27 | 102 |
| Msa0849330 | MtrunA17_Chr6g0484421 | 55.385 | 65 | 29 | 0 | 369 | 433 | 1 | 65 | 7.87e-18 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849330 | AT1G77420.1 | 57.403 | 385 | 126 | 2 | 49 | 433 | 36 | 382 | 1.70e-160 | 458 |
| Msa0849330 | AT5G16120.3 | 54.223 | 367 | 129 | 3 | 61 | 427 | 10 | 337 | 3.73e-139 | 402 |
| Msa0849330 | AT5G16120.1 | 54.223 | 367 | 129 | 3 | 61 | 427 | 10 | 337 | 3.73e-139 | 402 |
| Msa0849330 | AT5G16120.2 | 54.223 | 367 | 129 | 3 | 61 | 427 | 28 | 355 | 5.46e-139 | 402 |
| Msa0849330 | AT5G16120.4 | 54.223 | 367 | 129 | 3 | 61 | 427 | 42 | 369 | 6.56e-139 | 403 |
| Msa0849330 | AT2G39410.2 | 40.673 | 327 | 160 | 2 | 103 | 429 | 2 | 294 | 1.05e-83 | 259 |
| Msa0849330 | AT2G39420.1 | 40.798 | 326 | 159 | 2 | 106 | 431 | 5 | 296 | 2.30e-83 | 259 |
| Msa0849330 | AT3G62860.1 | 40.000 | 315 | 154 | 2 | 115 | 429 | 12 | 291 | 3.03e-80 | 252 |
| Msa0849330 | AT2G47630.1 | 39.329 | 328 | 166 | 1 | 104 | 431 | 1 | 295 | 4.79e-80 | 251 |
| Msa0849330 | AT2G39400.1 | 41.083 | 314 | 151 | 2 | 118 | 431 | 11 | 290 | 4.06e-78 | 245 |
| Msa0849330 | AT3G55180.1 | 40.566 | 318 | 156 | 1 | 115 | 432 | 8 | 292 | 4.23e-78 | 245 |
| Msa0849330 | AT1G11090.1 | 40.064 | 312 | 154 | 1 | 120 | 431 | 38 | 316 | 1.27e-74 | 236 |
| Msa0849330 | AT3G62860.2 | 39.427 | 279 | 136 | 1 | 151 | 429 | 3 | 248 | 2.56e-68 | 219 |
| Msa0849330 | AT3G55190.1 | 35.890 | 326 | 174 | 3 | 108 | 432 | 7 | 298 | 3.91e-68 | 219 |
| Msa0849330 | AT2G47630.2 | 38.790 | 281 | 139 | 1 | 151 | 431 | 3 | 250 | 4.12e-63 | 206 |
| Msa0849330 | AT2G47630.3 | 39.852 | 271 | 130 | 1 | 161 | 431 | 33 | 270 | 1.22e-62 | 206 |
| Msa0849330 | AT1G52760.1 | 31.940 | 335 | 187 | 5 | 103 | 430 | 24 | 324 | 1.62e-52 | 179 |
| Msa0849330 | AT2G39400.2 | 38.776 | 245 | 116 | 2 | 118 | 362 | 11 | 221 | 5.18e-52 | 175 |
| Msa0849330 | AT5G14980.1 | 29.573 | 328 | 195 | 4 | 107 | 433 | 27 | 319 | 2.71e-49 | 171 |
| Msa0849330 | AT5G19290.1 | 29.573 | 328 | 196 | 3 | 107 | 433 | 27 | 320 | 1.50e-47 | 166 |
| Msa0849330 | AT5G11650.1 | 28.169 | 355 | 207 | 11 | 79 | 429 | 68 | 378 | 9.24e-30 | 119 |
| Msa0849330 | AT1G73480.1 | 27.796 | 313 | 181 | 8 | 120 | 430 | 194 | 463 | 4.24e-28 | 116 |
| Msa0849330 | AT1G18360.1 | 28.025 | 314 | 180 | 9 | 120 | 430 | 112 | 382 | 1.33e-26 | 110 |
| Msa0849330 | AT2G39410.1 | 43.396 | 106 | 59 | 1 | 104 | 209 | 3 | 107 | 3.03e-26 | 102 |
| Msa0849330 | AT5G11650.2 | 37.398 | 123 | 71 | 5 | 108 | 230 | 100 | 216 | 1.89e-14 | 74.3 |
Find 94 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGATCATTGCTTGTTTA+AGG | 0.083877 | 5_4:-35883330 | Msa0849330:intron |
| CTTCAAAGGGTTGTTGTAAA+TGG | 0.149456 | 5_4:+35883538 | None:intergenic |
| TTGTCTCATGGCTTGATTCT+AGG | 0.244614 | 5_4:-35880065 | Msa0849330:CDS |
| AAATGGTTACCACTGCATTT+TGG | 0.257020 | 5_4:-35880130 | Msa0849330:CDS |
| CGATCCCTTTACATGAAGTT+TGG | 0.258584 | 5_4:-35881535 | Msa0849330:CDS |
| GCTATGGACTATCCAGGTTT+TGG | 0.259890 | 5_4:-35882469 | Msa0849330:CDS |
| TTAATCTCACTTATAATATA+AGG | 0.260315 | 5_4:+35883698 | None:intergenic |
| ACTTTAAAACTCTATGAAAA+TGG | 0.263784 | 5_4:-35880147 | Msa0849330:CDS |
| ATTCTTCCCATTTCCTCTTC+TGG | 0.265727 | 5_4:+35881506 | None:intergenic |
| GCACCATTATTGATTCTTCA+TGG | 0.293013 | 5_4:-35880240 | Msa0849330:CDS |
| TACAGAAATTTGCTCACTAA+TGG | 0.293286 | 5_4:+35880195 | None:intergenic |
| TTCTTCCCATTTCCTCTTCT+GGG | 0.313438 | 5_4:+35881507 | None:intergenic |
| ATTTGAAGGAGCCAGATAAT+TGG | 0.320173 | 5_4:-35882062 | Msa0849330:CDS |
| GAGCATTATACACAAATAAA+AGG | 0.327592 | 5_4:-35882385 | Msa0849330:intron |
| CCCACTAAGTTTATTGATCA+TGG | 0.332184 | 5_4:-35883621 | Msa0849330:exon |
| TTTGGGAAGAGCTTTGCTTT+TGG | 0.337150 | 5_4:+35881131 | None:intergenic |
| AAACAAAGACCTTGCTGAAC+TGG | 0.340152 | 5_4:-35881111 | Msa0849330:CDS |
| AATAAACTTAGTGGGATATC+AGG | 0.347666 | 5_4:+35883629 | None:intergenic |
| AGAACCGAGTAAAAGAAAAT+TGG | 0.356076 | 5_4:-35881081 | Msa0849330:intron |
| TTATCTTTCTAAGTCATTCT+CGG | 0.374735 | 5_4:-35880004 | Msa0849330:three_prime_UTR |
| AGTTCAGCAAGGTCTTTGTT+TGG | 0.377018 | 5_4:+35881113 | None:intergenic |
| ACATGCACATTCTTCTTTGA+AGG | 0.377141 | 5_4:-35882778 | Msa0849330:intron |
| AGAATGACTTAGAAAGATAA+AGG | 0.380604 | 5_4:+35880007 | None:intergenic |
| ATCACAGCATCCCAATTATC+TGG | 0.383934 | 5_4:+35882051 | None:intergenic |
| TTAGTTCCTTGTAATATGTA+AGG | 0.390594 | 5_4:-35881569 | Msa0849330:intron |
| GTTCAGCAAGGTCTTTGTTT+GGG | 0.393636 | 5_4:+35881114 | None:intergenic |
| TTCAAAGGGTTGTTGTAAAT+GGG | 0.394755 | 5_4:+35883539 | None:intergenic |
| GATCCCTTTACATGAAGTTT+GGG | 0.394806 | 5_4:-35881534 | Msa0849330:CDS |
| TCGACAAGATCATCGAAGTT+TGG | 0.400778 | 5_4:+35882418 | None:intergenic |
| TTCGCTTAAAGTTTATTTGA+AGG | 0.401747 | 5_4:-35882076 | Msa0849330:CDS |
| CATGATCGGAAGTTCCAAAA+TGG | 0.402850 | 5_4:+35883819 | None:intergenic |
| TTTGAAGGAGCCAGATAATT+GGG | 0.402919 | 5_4:-35882061 | Msa0849330:CDS |
| CGAGGTAATTCTCTCATATC+AGG | 0.408211 | 5_4:+35882132 | None:intergenic |
| TCTTCACTCACACCTTCAAT+TGG | 0.413503 | 5_4:+35883437 | None:intergenic |
| GCGAGGAGAATTGCTGCATC+TGG | 0.415251 | 5_4:-35882505 | Msa0849330:CDS |
| AGGATGTTAAGTTCTTTGAT+TGG | 0.415918 | 5_4:+35883576 | None:intergenic |
| AGTTCTGTTGGGACAGTCAA+TGG | 0.418351 | 5_4:-35882109 | Msa0849330:CDS |
| AGAATGCTTTAGTGATGATC+TGG | 0.422433 | 5_4:-35881488 | Msa0849330:intron |
| ATGGCTTGATTCTAGGTGTT+CGG | 0.424257 | 5_4:-35880058 | Msa0849330:CDS |
| AACGCCTTCATTACTGCATC+AGG | 0.429805 | 5_4:+35881176 | None:intergenic |
| TGAAAGGAATTCGAGGGGAT+TGG | 0.432685 | 5_4:-35882881 | Msa0849330:CDS |
| AAATACACAGATGCCTTGAT+TGG | 0.442711 | 5_4:+35882820 | None:intergenic |
| AAACCCAAACTTCATGTAAA+GGG | 0.451047 | 5_4:+35881531 | None:intergenic |
| GCTCCATGAAGAATCAATAA+TGG | 0.456411 | 5_4:+35880237 | None:intergenic |
| AGGGTAATTGATTCTTCAAA+GGG | 0.459828 | 5_4:+35883525 | None:intergenic |
| TCCATGATCAATAAACTTAG+TGG | 0.468452 | 5_4:+35883620 | None:intergenic |
| GATAAAGGAAATATTCCATT+GGG | 0.470424 | 5_4:+35880022 | None:intergenic |
| TCGTAACAAATAACATTGTA+AGG | 0.471754 | 5_4:+35880629 | None:intergenic |
| AAGGGTAATTGATTCTTCAA+AGG | 0.472924 | 5_4:+35883524 | None:intergenic |
| AAGAGCTGGATGCCAGAGTC+AGG | 0.476747 | 5_4:-35882847 | Msa0849330:CDS |
| CTGTTGGGACAGTCAATGGG+TGG | 0.480192 | 5_4:-35882105 | Msa0849330:CDS |
| GATAATCCACGACTTAAAAC+AGG | 0.483138 | 5_4:-35880605 | Msa0849330:CDS |
| GTTGGGACAGTCAATGGGTG+GGG | 0.483592 | 5_4:-35882103 | Msa0849330:CDS |
| TTCTAGAATATGCAAAATCA+AGG | 0.484935 | 5_4:+35883390 | None:intergenic |
| AGAATTACCTCGAGTTCTGT+TGG | 0.487343 | 5_4:-35882121 | Msa0849330:CDS |
| GAATTACCTCGAGTTCTGTT+GGG | 0.487693 | 5_4:-35882120 | Msa0849330:CDS |
| ACAGCTTGAATTCTATCATC+AGG | 0.488263 | 5_4:+35880099 | None:intergenic |
| AAAACCCAAACTTCATGTAA+AGG | 0.492647 | 5_4:+35881530 | None:intergenic |
| TTGATTGGAGTTCCTGACTC+TGG | 0.493591 | 5_4:+35882835 | None:intergenic |
| AAGAGAAAAGCACCAATTGA+AGG | 0.506066 | 5_4:-35883449 | Msa0849330:CDS |
| TTCATGATGACATTGTCTCA+TGG | 0.511182 | 5_4:-35880077 | Msa0849330:CDS |
| CGAAGACCTTACATATTACA+AGG | 0.514651 | 5_4:+35881563 | None:intergenic |
| TTGTTAAGTAGTGGTATGAA+AGG | 0.518878 | 5_4:-35882897 | Msa0849330:intron |
| TCTTCTGCTCTGATTCCAGC+AGG | 0.519878 | 5_4:+35883052 | None:intergenic |
| CCTTCTGAAAGTCCAAAACC+TGG | 0.522547 | 5_4:+35882457 | None:intergenic |
| TGTTGGGACAGTCAATGGGT+GGG | 0.525935 | 5_4:-35882104 | Msa0849330:CDS |
| AGATAAAGGAAATATTCCAT+TGG | 0.531859 | 5_4:+35880021 | None:intergenic |
| TTGTTGTAAATGGGAGAGAA+AGG | 0.534571 | 5_4:+35883548 | None:intergenic |
| CGAGGAGAATTGCTGCATCT+GGG | 0.538646 | 5_4:-35882504 | Msa0849330:CDS |
| GTTCTGTTGGGACAGTCAAT+GGG | 0.540122 | 5_4:-35882108 | Msa0849330:CDS |
| AATGGGAGAGAAAGGTATGA+AGG | 0.551833 | 5_4:+35883556 | None:intergenic |
| AATTGAGTCAAAAGTAGAGA+AGG | 0.554168 | 5_4:-35880555 | Msa0849330:intron |
| GGACTTTCAGAAGGATTGCA+TGG | 0.558308 | 5_4:-35882448 | Msa0849330:CDS |
| ACCACCTGATGCAGTAATGA+AGG | 0.558767 | 5_4:-35881180 | Msa0849330:CDS |
| AATGAGCTTACTTTACACAT+TGG | 0.565047 | 5_4:+35882018 | None:intergenic |
| AGAGTCAGGAACTCCAATCA+AGG | 0.570762 | 5_4:-35882833 | Msa0849330:CDS |
| TCTTCATGGAGCAGCAGACA+AGG | 0.573213 | 5_4:-35880226 | Msa0849330:CDS |
| ATGTTCACATATCACAATGA+AGG | 0.579876 | 5_4:+35879863 | None:intergenic |
| TCCACGACTTAAAACAGGCA+TGG | 0.581144 | 5_4:-35880600 | Msa0849330:CDS |
| AATGAAAGTGCTATGGTGAA+TGG | 0.590453 | 5_4:+35883794 | None:intergenic |
| GTGGTATGAAAGGAATTCGA+GGG | 0.591527 | 5_4:-35882887 | Msa0849330:CDS |
| CTCTGAAAGCCAGTTCAGCA+AGG | 0.602732 | 5_4:+35881102 | None:intergenic |
| GTATGAAAATGCATCTAGCA+AGG | 0.604169 | 5_4:-35880175 | Msa0849330:CDS |
| CCATGATCAATAAACTTAGT+GGG | 0.608766 | 5_4:+35883621 | None:intergenic |
| TCAATGAAATGAAAGTGCTA+TGG | 0.615515 | 5_4:+35883787 | None:intergenic |
| AATGCACAAATTGAAACTGA+AGG | 0.615703 | 5_4:+35879788 | None:intergenic |
| AGTGGTATGAAAGGAATTCG+AGG | 0.622926 | 5_4:-35882888 | Msa0849330:CDS |
| TGGTATGAAAGGAATTCGAG+GGG | 0.632293 | 5_4:-35882886 | Msa0849330:CDS |
| GACTGTCCCAACAGAACTCG+AGG | 0.633406 | 5_4:+35882114 | None:intergenic |
| TATGGTGAATGGTCCATGAT+CGG | 0.639331 | 5_4:+35883805 | None:intergenic |
| TTACAATGTTATTTGTTACG+AGG | 0.659216 | 5_4:-35880627 | Msa0849330:CDS |
| GCCTTCATTACTGCATCAGG+TGG | 0.660106 | 5_4:+35881179 | None:intergenic |
| GGTTAAGTGAGATTTCCCAA+TGG | 0.671475 | 5_4:-35880037 | Msa0849330:exon |
| GTTCCCCTTCCAAAATGCAG+TGG | 0.684497 | 5_4:+35880121 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATCTATATTGTAATAA+TGG | - | chr5_4:35882636-35882655 | Msa0849330:intron | 10.0% |
| !! | TTAATCTCACTTATAATATA+AGG | + | chr5_4:35879916-35879935 | None:intergenic | 15.0% |
| !!! | TCATTTTTCCAAATTATTAT+CGG | - | chr5_4:35880396-35880415 | Msa0849330:intron | 15.0% |
| !! | ACACAAAATAAAATAGAAAT+GGG | + | chr5_4:35880475-35880494 | None:intergenic | 15.0% |
| !! | TACACAAAATAAAATAGAAA+TGG | + | chr5_4:35880476-35880495 | None:intergenic | 15.0% |
| !!! | ATTTGTTGAACATAATAAAA+CGG | + | chr5_4:35880604-35880623 | None:intergenic | 15.0% |
| !!! | TAACTTTTATTTTGTTTGAT+TGG | - | chr5_4:35880655-35880674 | Msa0849330:intron | 15.0% |
| !!! | TGAAAATGTTTCTTTTATAA+TGG | - | chr5_4:35880924-35880943 | Msa0849330:intron | 15.0% |
| !! | TAAAAAATCAAAAAGTGAAT+AGG | + | chr5_4:35881076-35881095 | None:intergenic | 15.0% |
| !!! | TCTATTTTCTCAAATATTAT+TGG | + | chr5_4:35881334-35881353 | None:intergenic | 15.0% |
| !! | ATTAAACATAATGGTATTAT+TGG | - | chr5_4:35881730-35881749 | Msa0849330:intron | 15.0% |
| !!! | AAAAAACAATGAATTTTGTA+TGG | - | chr5_4:35883324-35883343 | Msa0849330:intron | 15.0% |
| !!! | ATTATTTTTGCAATTCAATT+TGG | - | chr5_4:35883705-35883724 | Msa0849330:five_prime_UTR | 15.0% |
| !!! | TTATTTTTGCAATTCAATTT+GGG | - | chr5_4:35883706-35883725 | Msa0849330:five_prime_UTR | 15.0% |
| !!! | ATTTCTTTGTGCAAAATTTT+AGG | - | chr5_4:35879875-35879894 | Msa0849330:three_prime_UTR | 20.0% |
| !!! | TTATTGAGTTTTGTTGTAAA+GGG | + | chr5_4:35880108-35880127 | None:intergenic | 20.0% |
| !!! | ATTATTGAGTTTTGTTGTAA+AGG | + | chr5_4:35880109-35880128 | None:intergenic | 20.0% |
| !! | ATAATTATATGTGTTAGTGT+CGG | + | chr5_4:35880365-35880384 | None:intergenic | 20.0% |
| !!! | TGATTTTATTTGTTAAGTAG+TGG | - | chr5_4:35880705-35880724 | Msa0849330:intron | 20.0% |
| !!! | TTTTGAAGTTTCTTAAAAGT+TGG | - | chr5_4:35881011-35881030 | Msa0849330:intron | 20.0% |
| !!! | TTTGAAGTTTCTTAAAAGTT+GGG | - | chr5_4:35881012-35881031 | Msa0849330:intron | 20.0% |
| !!! | CACTTTTTGATTTTTTATTC+AGG | - | chr5_4:35881079-35881098 | Msa0849330:intron | 20.0% |
| !! | AGAGTCTATATTAAACATAA+TGG | - | chr5_4:35881721-35881740 | Msa0849330:intron | 20.0% |
| !! | TAAAATAATCTGATACATCT+CGG | + | chr5_4:35882286-35882305 | None:intergenic | 20.0% |
| !! | TTTAACTACAATCTAATCAA+TGG | - | chr5_4:35882756-35882775 | Msa0849330:intron | 20.0% |
| !! | ACATCAAAAGAAAGTAAAAA+AGG | + | chr5_4:35883109-35883128 | None:intergenic | 20.0% |
| !!! | ACTTTAAAACTCTATGAAAA+TGG | - | chr5_4:35883464-35883483 | Msa0849330:CDS | 20.0% |
| !! | GTAAAATAATAAGTCATTCT+CGG | - | chr5_4:35883631-35883650 | Msa0849330:five_prime_UTR | 20.0% |
| !! | ATTGCAAAAATAATGTAGTT+AGG | + | chr5_4:35883699-35883718 | None:intergenic | 20.0% |
| !!! | CAATATTTTTTCATCTTTAG+AGG | - | chr5_4:35883773-35883792 | Msa0849330:five_prime_UTR | 20.0% |
| !!! | TTCTAGAATATGCAAAATCA+AGG | + | chr5_4:35880224-35880243 | None:intergenic | 25.0% |
| !!! | ATTTTGCATATTCTAGAAGA+AGG | - | chr5_4:35880226-35880245 | Msa0849330:CDS | 25.0% |
| !!! | TTTTGCATATTCTAGAAGAA+GGG | - | chr5_4:35880227-35880246 | Msa0849330:CDS | 25.0% |
| !! | GTTTCTTTTATAATGGTCTT+TGG | - | chr5_4:35880931-35880950 | Msa0849330:intron | 25.0% |
| ! | TCTTTGGATGTTTGTTTATA+GGG | - | chr5_4:35880947-35880966 | Msa0849330:intron | 25.0% |
| ! | TGATTCATTGTGTGAAAATT+GGG | - | chr5_4:35880977-35880996 | Msa0849330:intron | 25.0% |
| ! | TTGAAGTTTCTTAAAAGTTG+GGG | - | chr5_4:35881013-35881032 | Msa0849330:intron | 25.0% |
| ! | GAGCATTATACACAAATAAA+AGG | - | chr5_4:35881226-35881245 | Msa0849330:intron | 25.0% |
| ! | TTCGCTTAAAGTTTATTTGA+AGG | - | chr5_4:35881535-35881554 | Msa0849330:CDS | 25.0% |
| ! | TAATCTGTTTGCTTATTAAC+TGG | - | chr5_4:35881795-35881814 | Msa0849330:intron | 25.0% |
| ! | ATTAATCTATACCTCTGTTA+AGG | - | chr5_4:35881822-35881841 | Msa0849330:intron | 25.0% |
| ! | TTAGTTCCTTGTAATATGTA+AGG | - | chr5_4:35882042-35882061 | Msa0849330:CDS | 25.0% |
| ! | TTAGAAATGCATATTATGAC+CGG | + | chr5_4:35882227-35882246 | None:intergenic | 25.0% |
| !! | CTAACCAATTTTCTTTTACT+CGG | + | chr5_4:35882537-35882556 | None:intergenic | 25.0% |
| ! | TTGTAGTTAAACTACAGATA+TGG | + | chr5_4:35882747-35882766 | None:intergenic | 25.0% |
| !! | ATCCTTGTGTTATTCTTTAT+AGG | - | chr5_4:35882957-35882976 | Msa0849330:intron | 25.0% |
| ! | TCGTAACAAATAACATTGTA+AGG | + | chr5_4:35882985-35883004 | None:intergenic | 25.0% |
| !! | TTACAATGTTATTTGTTACG+AGG | - | chr5_4:35882984-35883003 | Msa0849330:intron | 25.0% |
| !!! | TGATTTGCTCAATTTATTAG+CGG | - | chr5_4:35883223-35883242 | Msa0849330:intron | 25.0% |
| !! | ATGAATTTTGTATGGTTGAT+TGG | - | chr5_4:35883332-35883351 | Msa0849330:CDS | 25.0% |
| !! | TGAATTTTGTATGGTTGATT+GGG | - | chr5_4:35883333-35883352 | Msa0849330:CDS | 25.0% |
| ! | GATAAAGGAAATATTCCATT+GGG | + | chr5_4:35883592-35883611 | None:intergenic | 25.0% |
| ! | AGATAAAGGAAATATTCCAT+TGG | + | chr5_4:35883593-35883612 | None:intergenic | 25.0% |
| ! | AGAATGACTTAGAAAGATAA+AGG | + | chr5_4:35883607-35883626 | None:intergenic | 25.0% |
| ! | TTATCTTTCTAAGTCATTCT+CGG | - | chr5_4:35883607-35883626 | Msa0849330:exon | 25.0% |
| !! | TCAATGAAATGAAAGTGCTA+TGG | + | chr5_4:35879827-35879846 | None:intergenic | 30.0% |
| AATAAACTTAGTGGGATATC+AGG | + | chr5_4:35879985-35880004 | None:intergenic | 30.0% | |
| CCATGATCAATAAACTTAGT+GGG | + | chr5_4:35879993-35880012 | None:intergenic | 30.0% | |
| TCCATGATCAATAAACTTAG+TGG | + | chr5_4:35879994-35880013 | None:intergenic | 30.0% | |
| AGGATGTTAAGTTCTTTGAT+TGG | + | chr5_4:35880038-35880057 | None:intergenic | 30.0% | |
| TTCAAAGGGTTGTTGTAAAT+GGG | + | chr5_4:35880075-35880094 | None:intergenic | 30.0% | |
| ! | AGGGTAATTGATTCTTCAAA+GGG | + | chr5_4:35880089-35880108 | None:intergenic | 30.0% |
| ! | AAGGGTAATTGATTCTTCAA+AGG | + | chr5_4:35880090-35880109 | None:intergenic | 30.0% |
| !!! | ACTGTTAGTTTTGTTGTCTT+TGG | + | chr5_4:35880135-35880154 | None:intergenic | 30.0% |
| !! | TTCTTTGATCTGTTTTTCCT+AGG | - | chr5_4:35880531-35880550 | Msa0849330:intron | 30.0% |
| TTGTTAAGTAGTGGTATGAA+AGG | - | chr5_4:35880714-35880733 | Msa0849330:intron | 30.0% | |
| !! | GTGTATTTTTGTCATGGATA+TGG | - | chr5_4:35880806-35880825 | Msa0849330:intron | 30.0% |
| TCTATGTTATCAGACAACAT+AGG | - | chr5_4:35880865-35880884 | Msa0849330:intron | 30.0% | |
| GTCTTTGGATGTTTGTTTAT+AGG | - | chr5_4:35880946-35880965 | Msa0849330:intron | 30.0% | |
| GTGATTCATTGTGTGAAAAT+TGG | - | chr5_4:35880976-35880995 | Msa0849330:intron | 30.0% | |
| TGAAGTTTCTTAAAAGTTGG+GGG | - | chr5_4:35881014-35881033 | Msa0849330:intron | 30.0% | |
| AATGAGCTTACTTTACACAT+TGG | + | chr5_4:35881596-35881615 | None:intergenic | 30.0% | |
| ATAATGAAGTTGTTGAGCAT+TGG | + | chr5_4:35881636-35881655 | None:intergenic | 30.0% | |
| CTCAAAAGTCATACTGTTAT+TGG | - | chr5_4:35881770-35881789 | Msa0849330:intron | 30.0% | |
| GTCATAATTTGAATGCTAAG+TGG | - | chr5_4:35881850-35881869 | Msa0849330:intron | 30.0% | |
| GTTCAACTTTCCTATAGATT+GGG | + | chr5_4:35881876-35881895 | None:intergenic | 30.0% | |
| AGTTCAACTTTCCTATAGAT+TGG | + | chr5_4:35881877-35881896 | None:intergenic | 30.0% | |
| GTCATGCTTTCTATGAAATA+AGG | + | chr5_4:35881983-35882002 | None:intergenic | 30.0% | |
| AAGAGGTCAAATATGTTTGT+TGG | - | chr5_4:35882012-35882031 | Msa0849330:intron | 30.0% | |
| AAACCCAAACTTCATGTAAA+GGG | + | chr5_4:35882083-35882102 | None:intergenic | 30.0% | |
| AAAACCCAAACTTCATGTAA+AGG | + | chr5_4:35882084-35882103 | None:intergenic | 30.0% | |
| GGTCATAATATGCATTTCTA+AGG | - | chr5_4:35882226-35882245 | Msa0849330:intron | 30.0% | |
| CTGATACGTCACAATTTAAA+GGG | + | chr5_4:35882338-35882357 | None:intergenic | 30.0% | |
| ACTGATACGTCACAATTTAA+AGG | + | chr5_4:35882339-35882358 | None:intergenic | 30.0% | |
| AGAACCGAGTAAAAGAAAAT+TGG | - | chr5_4:35882530-35882549 | Msa0849330:intron | 30.0% | |
| GAAATCATATGCAAGAGAAA+TGG | + | chr5_4:35882586-35882605 | None:intergenic | 30.0% | |
| ATATTTAGTGCAACACGTAA+AGG | + | chr5_4:35882786-35882805 | None:intergenic | 30.0% | |
| AGCCTATAAAGAATAACACA+AGG | + | chr5_4:35882962-35882981 | None:intergenic | 30.0% | |
| AATTGAGTCAAAAGTAGAGA+AGG | - | chr5_4:35883056-35883075 | Msa0849330:CDS | 30.0% | |
| ! | TACAGAAATTTGCTCACTAA+TGG | + | chr5_4:35883419-35883438 | None:intergenic | 30.0% |
| GCAAAAATAATGTAGTTAGG+AGG | + | chr5_4:35883696-35883715 | None:intergenic | 30.0% | |
| ! | TTTTTGCAATTCAATTTGGG+TGG | - | chr5_4:35883709-35883728 | Msa0849330:five_prime_UTR | 30.0% |
| ATGTTCACATATCACAATGA+AGG | + | chr5_4:35883751-35883770 | None:intergenic | 30.0% | |
| AATGCACAAATTGAAACTGA+AGG | + | chr5_4:35883826-35883845 | None:intergenic | 30.0% | |
| !! | AATGAAAGTGCTATGGTGAA+TGG | + | chr5_4:35879820-35879839 | None:intergenic | 35.0% |
| CCCACTAAGTTTATTGATCA+TGG | - | chr5_4:35879990-35880009 | Msa0849330:intron | 35.0% | |
| TTGTTGTAAATGGGAGAGAA+AGG | + | chr5_4:35880066-35880085 | None:intergenic | 35.0% | |
| CTTCAAAGGGTTGTTGTAAA+TGG | + | chr5_4:35880076-35880095 | None:intergenic | 35.0% | |
| !! | AAGAGAAAAGCACCAATTGA+AGG | - | chr5_4:35880162-35880181 | Msa0849330:CDS | 35.0% |
| GCTTGATCATTGCTTGTTTA+AGG | - | chr5_4:35880281-35880300 | Msa0849330:intron | 35.0% | |
| ! | TTTTCATCTTGACCAATGTC+AGG | - | chr5_4:35880320-35880339 | Msa0849330:intron | 35.0% |
| !!! | TGGAAATTTTTTGCAAGAGC+TGG | - | chr5_4:35880750-35880769 | Msa0849330:intron | 35.0% |
| AAATACACAGATGCCTTGAT+TGG | + | chr5_4:35880794-35880813 | None:intergenic | 35.0% | |
| !! | GCATCTGTGTATTTTTGTCA+TGG | - | chr5_4:35880800-35880819 | Msa0849330:intron | 35.0% |
| ACATGCACATTCTTCTTTGA+AGG | - | chr5_4:35880833-35880852 | Msa0849330:intron | 35.0% | |
| GAAGTTTCTTAAAAGTTGGG+GGG | - | chr5_4:35881015-35881034 | Msa0849330:intron | 35.0% | |
| AAGTTTCTTAAAAGTTGGGG+GGG | - | chr5_4:35881016-35881035 | Msa0849330:intron | 35.0% | |
| TCGACGAAAGTTACAATTTC+AGG | - | chr5_4:35881042-35881061 | Msa0849330:intron | 35.0% | |
| CGACGAAAGTTACAATTTCA+GGG | - | chr5_4:35881043-35881062 | Msa0849330:intron | 35.0% | |
| GACGAAAGTTACAATTTCAG+GGG | - | chr5_4:35881044-35881063 | Msa0849330:intron | 35.0% | |
| !!! | TTTTTTATTCAGGTGTTGCG+AGG | - | chr5_4:35881089-35881108 | Msa0849330:CDS | 35.0% |
| TCAACAGACACACCTATAAT+CGG | - | chr5_4:35881382-35881401 | Msa0849330:intron | 35.0% | |
| ATTTGAAGGAGCCAGATAAT+TGG | - | chr5_4:35881549-35881568 | Msa0849330:CDS | 35.0% | |
| TTTGAAGGAGCCAGATAATT+GGG | - | chr5_4:35881550-35881569 | Msa0849330:CDS | 35.0% | |
| ! | CATTGGTAACAATACAAACG+AGG | + | chr5_4:35881619-35881638 | None:intergenic | 35.0% |
| TATGACAAAGTCCTTAACAG+AGG | + | chr5_4:35881836-35881855 | None:intergenic | 35.0% | |
| CGAAGACCTTACATATTACA+AGG | + | chr5_4:35882051-35882070 | None:intergenic | 35.0% | |
| GATCCCTTTACATGAAGTTT+GGG | - | chr5_4:35882077-35882096 | Msa0849330:CDS | 35.0% | |
| AGAATGCTTTAGTGATGATC+TGG | - | chr5_4:35882123-35882142 | Msa0849330:CDS | 35.0% | |
| ! | TCGTCGAGATGTTAACATTT+TGG | - | chr5_4:35882183-35882202 | Msa0849330:intron | 35.0% |
| ! | AGATGTTAACATTTTGGACC+CGG | - | chr5_4:35882189-35882208 | Msa0849330:intron | 35.0% |
| !! | TTCTAAGGCAGATCATGTTA+AGG | - | chr5_4:35882241-35882260 | Msa0849330:intron | 35.0% |
| TGACGTATCAGTTTAACAGT+TGG | - | chr5_4:35882347-35882366 | Msa0849330:intron | 35.0% | |
| ! | TTGAATTTGCTCTCCAGATA+TGG | - | chr5_4:35882689-35882708 | Msa0849330:intron | 35.0% |
| ! | TGGCGACAATGTTGATATTT+TGG | + | chr5_4:35882727-35882746 | None:intergenic | 35.0% |
| AACCAAAATGTTGCAATGCA+AGG | + | chr5_4:35882892-35882911 | None:intergenic | 35.0% | |
| GATAATCCACGACTTAAAAC+AGG | - | chr5_4:35883006-35883025 | Msa0849330:intron | 35.0% | |
| ! | AAACAGGCATGGAACTTTTA+AGG | - | chr5_4:35883022-35883041 | Msa0849330:intron | 35.0% |
| ! | AACAGGCATGGAACTTTTAA+GGG | - | chr5_4:35883023-35883042 | Msa0849330:intron | 35.0% |
| !! | GCACCATTATTGATTCTTCA+TGG | - | chr5_4:35883371-35883390 | Msa0849330:CDS | 35.0% |
| GCTCCATGAAGAATCAATAA+TGG | + | chr5_4:35883377-35883396 | None:intergenic | 35.0% | |
| GTATGAAAATGCATCTAGCA+AGG | - | chr5_4:35883436-35883455 | Msa0849330:CDS | 35.0% | |
| ! | AAATGGTTACCACTGCATTT+TGG | - | chr5_4:35883481-35883500 | Msa0849330:CDS | 35.0% |
| ACAGCTTGAATTCTATCATC+AGG | + | chr5_4:35883515-35883534 | None:intergenic | 35.0% | |
| TTCATGATGACATTGTCTCA+TGG | - | chr5_4:35883534-35883553 | Msa0849330:CDS | 35.0% | |
| CATGATCGGAAGTTCCAAAA+TGG | + | chr5_4:35879795-35879814 | None:intergenic | 40.0% | |
| !!! | CATTTTGGAACTTCCGATCA+TGG | - | chr5_4:35879793-35879812 | Msa0849330:three_prime_UTR | 40.0% |
| TATGGTGAATGGTCCATGAT+CGG | + | chr5_4:35879809-35879828 | None:intergenic | 40.0% | |
| ! | AATGGGAGAGAAAGGTATGA+AGG | + | chr5_4:35880058-35880077 | None:intergenic | 40.0% |
| TCTTCACTCACACCTTCAAT+TGG | + | chr5_4:35880177-35880196 | None:intergenic | 40.0% | |
| ! | ACATGTCTAAAGCCTGACAT+TGG | + | chr5_4:35880335-35880354 | None:intergenic | 40.0% |
| CGTCGACACCGATAATAATT+TGG | + | chr5_4:35880407-35880426 | None:intergenic | 40.0% | |
| ! | CTGAGGAGTATGTGTTTCAT+AGG | - | chr5_4:35880430-35880449 | Msa0849330:intron | 40.0% |
| GGAGTATGTGTTTCATAGGT+TGG | - | chr5_4:35880434-35880453 | Msa0849330:intron | 40.0% | |
| AGTGGTATGAAAGGAATTCG+AGG | - | chr5_4:35880723-35880742 | Msa0849330:intron | 40.0% | |
| GTGGTATGAAAGGAATTCGA+GGG | - | chr5_4:35880724-35880743 | Msa0849330:intron | 40.0% | |
| TGGTATGAAAGGAATTCGAG+GGG | - | chr5_4:35880725-35880744 | Msa0849330:intron | 40.0% | |
| CATTGTGTGAAAATTGGGTG+TGG | - | chr5_4:35880982-35881001 | Msa0849330:intron | 40.0% | |
| !!! | TGGGTATGCTGTTTTTGCTA+TGG | - | chr5_4:35881126-35881145 | Msa0849330:CDS | 40.0% |
| !! | GTTTTTGCTATGGACTATCC+AGG | - | chr5_4:35881136-35881155 | Msa0849330:CDS | 40.0% |
| TCGACAAGATCATCGAAGTT+TGG | + | chr5_4:35881196-35881215 | None:intergenic | 40.0% | |
| ! | CAGTTTCAAGTGTAGTGTCA+GGG | + | chr5_4:35881302-35881321 | None:intergenic | 40.0% |
| ! | TCAGTTTCAAGTGTAGTGTC+AGG | + | chr5_4:35881303-35881322 | None:intergenic | 40.0% |
| CTGGATAGGTTTCAAAGACA+TGG | - | chr5_4:35881416-35881435 | Msa0849330:intron | 40.0% | |
| CGAGGTAATTCTCTCATATC+AGG | + | chr5_4:35881482-35881501 | None:intergenic | 40.0% | |
| AGAATTACCTCGAGTTCTGT+TGG | - | chr5_4:35881490-35881509 | Msa0849330:CDS | 40.0% | |
| GAATTACCTCGAGTTCTGTT+GGG | - | chr5_4:35881491-35881510 | Msa0849330:CDS | 40.0% | |
| ATCACAGCATCCCAATTATC+TGG | + | chr5_4:35881563-35881582 | None:intergenic | 40.0% | |
| ATCATGTGAGATGTGATACG+TGG | - | chr5_4:35881904-35881923 | Msa0849330:intron | 40.0% | |
| TCATGTGAGATGTGATACGT+GGG | - | chr5_4:35881905-35881924 | Msa0849330:intron | 40.0% | |
| TTCCTTGAACCTTGTAACCT+AGG | - | chr5_4:35881931-35881950 | Msa0849330:intron | 40.0% | |
| TCCTTGAACCTTGTAACCTA+GGG | - | chr5_4:35881932-35881951 | Msa0849330:intron | 40.0% | |
| AGCATGACAGAGAAAGAAAG+AGG | - | chr5_4:35881995-35882014 | Msa0849330:intron | 40.0% | |
| CGATCCCTTTACATGAAGTT+TGG | - | chr5_4:35882076-35882095 | Msa0849330:CDS | 40.0% | |
| ! | GTTTTCCCAGAAGAGGAAAT+GGG | - | chr5_4:35882099-35882118 | Msa0849330:CDS | 40.0% |
| TTCTTCCCATTTCCTCTTCT+GGG | + | chr5_4:35882107-35882126 | None:intergenic | 40.0% | |
| ATTCTTCCCATTTCCTCTTC+TGG | + | chr5_4:35882108-35882127 | None:intergenic | 40.0% | |
| TGACCGGTCAATATTGAATC+CGG | + | chr5_4:35882211-35882230 | None:intergenic | 40.0% | |
| CGTATCAGTTTAACAGTTGG+AGG | - | chr5_4:35882350-35882369 | Msa0849330:intron | 40.0% | |
| ACATCATCTGCAATCTTACC+AGG | + | chr5_4:35882408-35882427 | None:intergenic | 40.0% | |
| ! | TTTGGGAAGAGCTTTGCTTT+TGG | + | chr5_4:35882483-35882502 | None:intergenic | 40.0% |
| ! | GTTCAGCAAGGTCTTTGTTT+GGG | + | chr5_4:35882500-35882519 | None:intergenic | 40.0% |
| AGTTCAGCAAGGTCTTTGTT+TGG | + | chr5_4:35882501-35882520 | None:intergenic | 40.0% | |
| AAACAAAGACCTTGCTGAAC+TGG | - | chr5_4:35882500-35882519 | Msa0849330:CDS | 40.0% | |
| ! | TGCCTTGCATTGCAACATTT+TGG | - | chr5_4:35882887-35882906 | Msa0849330:CDS | 40.0% |
| TATGAAGCACAGACATTCCT+CGG | - | chr5_4:35883145-35883164 | Msa0849330:intron | 40.0% | |
| ATGCTGAAACCTATGAAGCA+CGG | + | chr5_4:35883284-35883303 | None:intergenic | 40.0% | |
| ATGGTTGATTGGGTTATGTC+AGG | - | chr5_4:35883343-35883362 | Msa0849330:CDS | 40.0% | |
| !! | GTTACCACTGCATTTTGGAA+GGG | - | chr5_4:35883486-35883505 | Msa0849330:CDS | 40.0% |
| !! | TTACCACTGCATTTTGGAAG+GGG | - | chr5_4:35883487-35883506 | Msa0849330:CDS | 40.0% |
| TTGTCTCATGGCTTGATTCT+AGG | - | chr5_4:35883546-35883565 | Msa0849330:CDS | 40.0% | |
| ATGGCTTGATTCTAGGTGTT+CGG | - | chr5_4:35883553-35883572 | Msa0849330:CDS | 40.0% | |
| GGTTAAGTGAGATTTCCCAA+TGG | - | chr5_4:35883574-35883593 | Msa0849330:CDS | 40.0% | |
| TGAAAGGAATTCGAGGGGAT+TGG | - | chr5_4:35880730-35880749 | Msa0849330:intron | 45.0% | |
| TTGATTGGAGTTCCTGACTC+TGG | + | chr5_4:35880779-35880798 | None:intergenic | 45.0% | |
| AGAGTCAGGAACTCCAATCA+AGG | - | chr5_4:35880778-35880797 | Msa0849330:intron | 45.0% | |
| !! | GCTATGGACTATCCAGGTTT+TGG | - | chr5_4:35881142-35881161 | Msa0849330:CDS | 45.0% |
| ! | CCTTCTGAAAGTCCAAAACC+TGG | + | chr5_4:35881157-35881176 | None:intergenic | 45.0% |
| !!! | CCAGGTTTTGGACTTTCAGA+AGG | - | chr5_4:35881154-35881173 | Msa0849330:CDS | 45.0% |
| GGACTTTCAGAAGGATTGCA+TGG | - | chr5_4:35881163-35881182 | Msa0849330:CDS | 45.0% | |
| ! | TGTCTGTTGACTGACACACA+TGG | + | chr5_4:35881372-35881391 | None:intergenic | 45.0% |
| ACAGACACACCTATAATCGG+AGG | - | chr5_4:35881385-35881404 | Msa0849330:intron | 45.0% | |
| ! | ACACCTATAATCGGAGGTGT+CGG | - | chr5_4:35881391-35881410 | Msa0849330:intron | 45.0% |
| AGTTCTGTTGGGACAGTCAA+TGG | - | chr5_4:35881502-35881521 | Msa0849330:CDS | 45.0% | |
| GTTCTGTTGGGACAGTCAAT+GGG | - | chr5_4:35881503-35881522 | Msa0849330:CDS | 45.0% | |
| TGCTAAGTGGCCCAATCTAT+AGG | - | chr5_4:35881863-35881882 | Msa0849330:intron | 45.0% | |
| CATGTGAGATGTGATACGTG+GGG | - | chr5_4:35881906-35881925 | Msa0849330:intron | 45.0% | |
| TCCCTAGGTTACAAGGTTCA+AGG | + | chr5_4:35881936-35881955 | None:intergenic | 45.0% | |
| ACAAGTTTCAGTAGCTCCCT+AGG | + | chr5_4:35881951-35881970 | None:intergenic | 45.0% | |
| !! | AGTTTGGGTTTTCCCAGAAG+AGG | - | chr5_4:35882092-35882111 | Msa0849330:CDS | 45.0% |
| ! | GGTTTTCCCAGAAGAGGAAA+TGG | - | chr5_4:35882098-35882117 | Msa0849330:CDS | 45.0% |
| GACCCGGATTCAATATTGAC+CGG | - | chr5_4:35882205-35882224 | Msa0849330:intron | 45.0% | |
| GACCGGTCAATATTGAATCC+GGG | + | chr5_4:35882210-35882229 | None:intergenic | 45.0% | |
| !! | GACTTGCTGATTTGTGTTCC+TGG | - | chr5_4:35882387-35882406 | Msa0849330:CDS | 45.0% |
| ACCACCTGATGCAGTAATGA+AGG | - | chr5_4:35882431-35882450 | Msa0849330:CDS | 45.0% | |
| AACGCCTTCATTACTGCATC+AGG | + | chr5_4:35882438-35882457 | None:intergenic | 45.0% | |
| TTGCTCTCCAGATATGGTTG+TGG | - | chr5_4:35882695-35882714 | Msa0849330:intron | 45.0% | |
| GAAGTCTCCACAACCATATC+TGG | + | chr5_4:35882705-35882724 | None:intergenic | 45.0% | |
| GTTTAAGCTGCGTGACTAGT+AGG | + | chr5_4:35882857-35882876 | None:intergenic | 45.0% | |
| TCCACGACTTAAAACAGGCA+TGG | - | chr5_4:35883011-35883030 | Msa0849330:intron | 45.0% | |
| !! | TCCATGCCTGTTTTAAGTCG+TGG | + | chr5_4:35883015-35883034 | None:intergenic | 45.0% |
| GAGGAATGTCTGTGCTTCAT+AGG | + | chr5_4:35883146-35883165 | None:intergenic | 45.0% | |
| TGTCTGTATCCGTGCTTCAT+AGG | - | chr5_4:35883272-35883291 | Msa0849330:intron | 45.0% | |
| ! | GGTTACCACTGCATTTTGGA+AGG | - | chr5_4:35883485-35883504 | Msa0849330:CDS | 45.0% |
| ! | TTTTCCTAGGATGCTCCTGC+TGG | - | chr5_4:35880544-35880563 | Msa0849330:intron | 50.0% |
| TCTTCTGCTCTGATTCCAGC+AGG | + | chr5_4:35880562-35880581 | None:intergenic | 50.0% | |
| CGAGGAGAATTGCTGCATCT+GGG | - | chr5_4:35881107-35881126 | Msa0849330:CDS | 50.0% | |
| TGTTGGGACAGTCAATGGGT+GGG | - | chr5_4:35881507-35881526 | Msa0849330:CDS | 50.0% | |
| CAGTAGCTCCCTAGGTTACA+AGG | + | chr5_4:35881943-35881962 | None:intergenic | 50.0% | |
| GCCTTCATTACTGCATCAGG+TGG | + | chr5_4:35882435-35882454 | None:intergenic | 50.0% | |
| ! | CTCTGAAAGCCAGTTCAGCA+AGG | + | chr5_4:35882512-35882531 | None:intergenic | 50.0% |
| GCACAGACATTCCTCGGATT+AGG | - | chr5_4:35883151-35883170 | Msa0849330:intron | 50.0% | |
| ACGGATACAGACACGTACAC+CGG | + | chr5_4:35883265-35883284 | None:intergenic | 50.0% | |
| TCTTCATGGAGCAGCAGACA+AGG | - | chr5_4:35883385-35883404 | Msa0849330:CDS | 50.0% | |
| GTTCCCCTTCCAAAATGCAG+TGG | + | chr5_4:35883493-35883512 | None:intergenic | 50.0% | |
| !! | TATCGGTGTCGACGTGTCTG+AGG | - | chr5_4:35880413-35880432 | Msa0849330:intron | 55.0% |
| !! | GATTCCAGCAGGAGCATCCT+AGG | + | chr5_4:35880551-35880570 | None:intergenic | 55.0% |
| AAGAGCTGGATGCCAGAGTC+AGG | - | chr5_4:35880764-35880783 | Msa0849330:intron | 55.0% | |
| GCGAGGAGAATTGCTGCATC+TGG | - | chr5_4:35881106-35881125 | Msa0849330:CDS | 55.0% | |
| ! | GCACCGACACCTCCGATTAT+AGG | + | chr5_4:35881397-35881416 | None:intergenic | 55.0% |
| !! | ATAATCGGAGGTGTCGGTGC+TGG | - | chr5_4:35881397-35881416 | Msa0849330:intron | 55.0% |
| GACTGTCCCAACAGAACTCG+AGG | + | chr5_4:35881500-35881519 | None:intergenic | 55.0% | |
| CTGTTGGGACAGTCAATGGG+TGG | - | chr5_4:35881506-35881525 | Msa0849330:CDS | 55.0% | |
| GTTGGGACAGTCAATGGGTG+GGG | - | chr5_4:35881508-35881527 | Msa0849330:CDS | 55.0% | |
| TGTCGAAACGTGTCCGACAG+CGG | + | chr5_4:35883183-35883202 | None:intergenic | 55.0% | |
| GATTAGGCGTGTCCCGCTGT+CGG | - | chr5_4:35883167-35883186 | Msa0849330:intron | 60.0% | |
| GTCGAAACGTGTCCGACAGC+GGG | + | chr5_4:35883182-35883201 | None:intergenic | 60.0% | |
| !! | CGGAGGTGTCGGTGCTGGAT+AGG | - | chr5_4:35881402-35881421 | Msa0849330:intron | 65.0% |
| AGCGGGACACGCCTAATCCG+AGG | + | chr5_4:35883165-35883184 | None:intergenic | 65.0% | |
| ! | CGGTGTCAGCGTGTCGTGTC+CGG | - | chr5_4:35883243-35883262 | Msa0849330:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 35879787 | 35883846 | 35879787 | ID=Msa0849330;Name=Msa0849330 |
| chr5_4 | mRNA | 35879787 | 35883846 | 35879787 | ID=Msa0849330-mRNA-1;Parent=Msa0849330;Name=Msa0849330-mRNA-1;_AED=0.13;_eAED=0.13;_QI=202|0.72|0.83|0.91|0.72|0.58|12|190|433 |
| chr5_4 | exon | 35879787 | 35879910 | 35879787 | ID=Msa0849330-mRNA-1:exon:11985;Parent=Msa0849330-mRNA-1 |
| chr5_4 | exon | 35879960 | 35879977 | 35879960 | ID=Msa0849330-mRNA-1:exon:11984;Parent=Msa0849330-mRNA-1 |
| chr5_4 | exon | 35880002 | 35880268 | 35880002 | ID=Msa0849330-mRNA-1:exon:11983;Parent=Msa0849330-mRNA-1 |
| chr5_4 | exon | 35880556 | 35880654 | 35880556 | ID=Msa0849330-mRNA-1:exon:11982;Parent=Msa0849330-mRNA-1 |
| chr5_4 | exon | 35881082 | 35881219 | 35881082 | ID=Msa0849330-mRNA-1:exon:11981;Parent=Msa0849330-mRNA-1 |
| chr5_4 | exon | 35881489 | 35881587 | 35881489 | ID=Msa0849330-mRNA-1:exon:11980;Parent=Msa0849330-mRNA-1 |
| chr5_4 | exon | 35882029 | 35882159 | 35882029 | ID=Msa0849330-mRNA-1:exon:11979;Parent=Msa0849330-mRNA-1 |
| chr5_4 | exon | 35882386 | 35882532 | 35882386 | ID=Msa0849330-mRNA-1:exon:11978;Parent=Msa0849330-mRNA-1 |
| chr5_4 | exon | 35882779 | 35882908 | 35882779 | ID=Msa0849330-mRNA-1:exon:11977;Parent=Msa0849330-mRNA-1 |
| chr5_4 | exon | 35883036 | 35883080 | 35883036 | ID=Msa0849330-mRNA-1:exon:11976;Parent=Msa0849330-mRNA-1 |
| chr5_4 | exon | 35883331 | 35883749 | 35883331 | ID=Msa0849330-mRNA-1:exon:11975;Parent=Msa0849330-mRNA-1 |
| chr5_4 | exon | 35883770 | 35883846 | 35883770 | ID=Msa0849330-mRNA-1:exon:11974;Parent=Msa0849330-mRNA-1 |
| chr5_4 | five_prime_UTR | 35883770 | 35883846 | 35883770 | ID=Msa0849330-mRNA-1:five_prime_utr;Parent=Msa0849330-mRNA-1 |
| chr5_4 | five_prime_UTR | 35883625 | 35883749 | 35883625 | ID=Msa0849330-mRNA-1:five_prime_utr;Parent=Msa0849330-mRNA-1 |
| chr5_4 | CDS | 35883331 | 35883624 | 35883331 | ID=Msa0849330-mRNA-1:cds;Parent=Msa0849330-mRNA-1 |
| chr5_4 | CDS | 35883036 | 35883080 | 35883036 | ID=Msa0849330-mRNA-1:cds;Parent=Msa0849330-mRNA-1 |
| chr5_4 | CDS | 35882779 | 35882908 | 35882779 | ID=Msa0849330-mRNA-1:cds;Parent=Msa0849330-mRNA-1 |
| chr5_4 | CDS | 35882386 | 35882532 | 35882386 | ID=Msa0849330-mRNA-1:cds;Parent=Msa0849330-mRNA-1 |
| chr5_4 | CDS | 35882029 | 35882159 | 35882029 | ID=Msa0849330-mRNA-1:cds;Parent=Msa0849330-mRNA-1 |
| chr5_4 | CDS | 35881489 | 35881587 | 35881489 | ID=Msa0849330-mRNA-1:cds;Parent=Msa0849330-mRNA-1 |
| chr5_4 | CDS | 35881082 | 35881219 | 35881082 | ID=Msa0849330-mRNA-1:cds;Parent=Msa0849330-mRNA-1 |
| chr5_4 | CDS | 35880556 | 35880654 | 35880556 | ID=Msa0849330-mRNA-1:cds;Parent=Msa0849330-mRNA-1 |
| chr5_4 | CDS | 35880050 | 35880268 | 35880050 | ID=Msa0849330-mRNA-1:cds;Parent=Msa0849330-mRNA-1 |
| chr5_4 | three_prime_UTR | 35880002 | 35880049 | 35880002 | ID=Msa0849330-mRNA-1:three_prime_utr;Parent=Msa0849330-mRNA-1 |
| chr5_4 | three_prime_UTR | 35879960 | 35879977 | 35879960 | ID=Msa0849330-mRNA-1:three_prime_utr;Parent=Msa0849330-mRNA-1 |
| chr5_4 | three_prime_UTR | 35879787 | 35879910 | 35879787 | ID=Msa0849330-mRNA-1:three_prime_utr;Parent=Msa0849330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
