Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730270 | XP_003614638.1 | 88.453 | 433 | 12 | 2 | 1 | 433 | 1 | 395 | 0.0 | 775 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730270 | sp|Q9C942|CSE_ARATH | 31.642 | 335 | 188 | 5 | 103 | 430 | 24 | 324 | 4.28e-50 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730270 | G7K1K2 | 88.453 | 433 | 12 | 2 | 1 | 433 | 1 | 395 | 0.0 | 775 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029880 | Msa0730270 | 0.816225 | 6.170319e-52 | -8.615850e-47 |
| Msa0029890 | Msa0730270 | 0.821001 | 5.090846e-53 | -8.615850e-47 |
| Msa0029900 | Msa0730270 | 0.812544 | 4.018622e-51 | -8.615850e-47 |
| Msa0077130 | Msa0730270 | 0.812787 | 3.556007e-51 | -8.615850e-47 |
| Msa0078660 | Msa0730270 | 0.801764 | 7.719537e-49 | -8.615850e-47 |
| Msa0100070 | Msa0730270 | 0.809115 | 2.219836e-50 | -8.615850e-47 |
| Msa0105420 | Msa0730270 | 0.811423 | 7.054881e-51 | -8.615850e-47 |
| Msa0114540 | Msa0730270 | -0.805892 | 1.072026e-49 | -8.615850e-47 |
| Msa0620790 | Msa0730270 | 0.815861 | 7.440791e-52 | -8.615850e-47 |
| Msa0626230 | Msa0730270 | 0.808850 | 2.528362e-50 | -8.615850e-47 |
| Msa0626280 | Msa0730270 | 0.851028 | 1.158466e-60 | -8.615850e-47 |
| Msa0638280 | Msa0730270 | 0.812695 | 3.725229e-51 | -8.615850e-47 |
| Msa0638320 | Msa0730270 | 0.800817 | 1.206038e-48 | -8.615850e-47 |
| Msa0658570 | Msa0730270 | 0.824798 | 6.638914e-54 | -8.615850e-47 |
| Msa0664570 | Msa0730270 | 0.804331 | 2.273924e-49 | -8.615850e-47 |
| Msa0664850 | Msa0730270 | 0.815084 | 1.107863e-51 | -8.615850e-47 |
| Msa0682950 | Msa0730270 | 0.801648 | 8.152727e-49 | -8.615850e-47 |
| Msa0696740 | Msa0730270 | 0.832786 | 7.748116e-56 | -8.615850e-47 |
| Msa0696770 | Msa0730270 | 0.831662 | 1.470235e-55 | -8.615850e-47 |
| Msa0703490 | Msa0730270 | 0.832753 | 7.898034e-56 | -8.615850e-47 |
| Msa0730270 | Msa0754680 | 0.847854 | 8.885995e-60 | -8.615850e-47 |
| Msa0730270 | Msa0770580 | 0.881928 | 1.596059e-70 | -8.615850e-47 |
| Msa0730270 | Msa0797350 | 0.847868 | 8.804732e-60 | -8.615850e-47 |
| Msa0730270 | Msa0808550 | 0.881354 | 2.573278e-70 | -8.615850e-47 |
| Msa0730270 | Msa0818160 | 0.810294 | 1.238171e-50 | -8.615850e-47 |
| Msa0730270 | Msa0829620 | 0.806007 | 1.014027e-49 | -8.615850e-47 |
| Msa0730270 | Msa0834860 | 0.824057 | 9.918533e-54 | -8.615850e-47 |
| Msa0730270 | Msa0849330 | 0.897214 | 1.746945e-76 | -8.615850e-47 |
| Msa0730270 | Msa0868020 | 0.819843 | 9.385718e-53 | -8.615850e-47 |
| Msa0730270 | Msa0893810 | 0.808997 | 2.352449e-50 | -8.615850e-47 |
| Msa0730270 | Msa0908170 | 0.802382 | 5.759917e-49 | -8.615850e-47 |
| Msa0730270 | Msa0930400 | -0.819527 | 1.108451e-52 | -8.615850e-47 |
| Msa0730270 | Msa0964130 | 0.817717 | 2.853609e-52 | -8.615850e-47 |
| Msa0730270 | Msa1008490 | 0.816285 | 5.984635e-52 | -8.615850e-47 |
| Msa0730270 | Msa1009000 | 0.826994 | 1.998340e-54 | -8.615850e-47 |
| Msa0730270 | Msa1020710 | 0.818742 | 1.672599e-52 | -8.615850e-47 |
| Msa0730270 | Msa1026500 | 0.824057 | 9.920586e-54 | -8.615850e-47 |
| Msa0730270 | Msa1037700 | -0.803240 | 3.830830e-49 | -8.615850e-47 |
| Msa0730270 | Msa1069300 | 0.807607 | 4.654235e-50 | -8.615850e-47 |
| Msa0730270 | Msa1074570 | 0.812848 | 3.447857e-51 | -8.615850e-47 |
| Msa0730270 | Msa1076680 | 0.801519 | 8.665232e-49 | -8.615850e-47 |
| Msa0730270 | Msa1098560 | 0.827205 | 1.778647e-54 | -8.615850e-47 |
| Msa0730270 | Msa1099030 | 0.817626 | 2.990929e-52 | -8.615850e-47 |
| Msa0730270 | Msa1111760 | 0.822157 | 2.752972e-53 | -8.615850e-47 |
| Msa0730270 | Msa1127770 | 0.820851 | 5.512083e-53 | -8.615850e-47 |
| Msa0730270 | Msa1143620 | 0.813462 | 2.528754e-51 | -8.615850e-47 |
| Msa0730270 | Msa1154070 | 0.820007 | 8.610769e-53 | -8.615850e-47 |
| Msa0730270 | Msa1229600 | 0.804405 | 2.194292e-49 | -8.615850e-47 |
| Msa0730270 | Msa1267610 | 0.802017 | 6.848356e-49 | -8.615850e-47 |
| Msa0730270 | Msa1278840 | 0.827118 | 1.866005e-54 | -8.615850e-47 |
| Msa0730270 | Msa1318240 | 0.807222 | 5.617148e-50 | -8.615850e-47 |
| Msa0730270 | Msa1358870 | -0.805877 | 1.079897e-49 | -8.615850e-47 |
| Msa0730270 | Msa1363890 | 0.805679 | 1.188103e-49 | -8.615850e-47 |
| Msa0730270 | Msa1364470 | -0.806720 | 7.170709e-50 | -8.615850e-47 |
| Msa0730270 | Msa1376890 | 0.820739 | 5.851068e-53 | -8.615850e-47 |
| Msa0730270 | Msa1381940 | 0.833622 | 4.798468e-56 | -8.615850e-47 |
| Msa0730270 | Msa1393410 | 0.812686 | 3.741965e-51 | -8.615850e-47 |
| Msa0730270 | Msa1395530 | 0.800923 | 1.147505e-48 | -8.615850e-47 |
| Msa0730270 | Msa1408790 | 0.808640 | 2.804154e-50 | -8.615850e-47 |
| Msa0730270 | Msa1435420 | 0.808553 | 2.927138e-50 | -8.615850e-47 |
| Msa0730270 | Msa1436040 | 0.801978 | 6.976087e-49 | -8.615850e-47 |
| Msa0730270 | Msa1445790 | 0.821601 | 3.701451e-53 | -8.615850e-47 |
| Msa0730270 | Msa1459390 | 0.805428 | 1.341113e-49 | -8.615850e-47 |
| Msa0730270 | Msa1465900 | 0.816106 | 6.561689e-52 | -8.615850e-47 |
| Msa0141230 | Msa0730270 | 0.833057 | 6.634408e-56 | -8.615850e-47 |
| Msa0142470 | Msa0730270 | 0.813837 | 2.091045e-51 | -8.615850e-47 |
| Msa0169870 | Msa0730270 | 0.804107 | 2.531470e-49 | -8.615850e-47 |
| Msa0170090 | Msa0730270 | 0.840973 | 6.297415e-58 | -8.615850e-47 |
| Msa0190830 | Msa0730270 | 0.812122 | 4.970152e-51 | -8.615850e-47 |
| Msa0191250 | Msa0730270 | 0.801483 | 8.813501e-49 | -8.615850e-47 |
| Msa0217400 | Msa0730270 | 0.815055 | 1.124875e-51 | -8.615850e-47 |
| Msa0227510 | Msa0730270 | 0.821401 | 4.117144e-53 | -8.615850e-47 |
| Msa0233190 | Msa0730270 | 0.817101 | 3.926882e-52 | -8.615850e-47 |
| Msa0380920 | Msa0730270 | 0.806622 | 7.521572e-50 | -8.615850e-47 |
| Msa0430820 | Msa0730270 | 0.824766 | 6.758010e-54 | -8.615850e-47 |
| Msa0448550 | Msa0730270 | -0.827874 | 1.229125e-54 | -8.615850e-47 |
| Msa0452920 | Msa0730270 | 0.801036 | 1.088262e-48 | -8.615850e-47 |
| Msa0464900 | Msa0730270 | 0.807603 | 4.662011e-50 | -8.615850e-47 |
| Msa0467920 | Msa0730270 | -0.812802 | 3.529667e-51 | -8.615850e-47 |
| Msa0256510 | Msa0730270 | 0.815146 | 1.073313e-51 | -8.615850e-47 |
| Msa0266000 | Msa0730270 | -0.828999 | 6.577974e-55 | -8.615850e-47 |
| Msa0272730 | Msa0730270 | 0.801125 | 1.043359e-48 | -8.615850e-47 |
| Msa0311580 | Msa0730270 | 0.817925 | 2.561143e-52 | -8.615850e-47 |
| Msa0334350 | Msa0730270 | 0.817307 | 3.530093e-52 | -8.615850e-47 |
| Msa0335040 | Msa0730270 | 0.842609 | 2.329443e-58 | -8.615850e-47 |
| Msa0351230 | Msa0730270 | 0.801649 | 8.150026e-49 | -8.615850e-47 |
| Msa0356890 | Msa0730270 | -0.846223 | 2.485969e-59 | -8.615850e-47 |
| Msa0362740 | Msa0730270 | 0.805802 | 1.119481e-49 | -8.615850e-47 |
| Msa0567020 | Msa0730270 | 0.836640 | 8.313408e-57 | -8.615850e-47 |
| Msa0569020 | Msa0730270 | 0.813995 | 1.930273e-51 | -8.615850e-47 |
| Msa0586910 | Msa0730270 | 0.810091 | 1.369562e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730270 | MtrunA17_Chr5g0423541 | 88.453 | 433 | 12 | 2 | 1 | 433 | 1 | 395 | 0.0 | 775 |
| Msa0730270 | MtrunA17_Chr1g0209741 | 63.048 | 433 | 104 | 6 | 1 | 431 | 1 | 379 | 0.0 | 549 |
| Msa0730270 | MtrunA17_Chr7g0215451 | 52.575 | 369 | 136 | 3 | 59 | 427 | 7 | 336 | 5.07e-133 | 386 |
| Msa0730270 | MtrunA17_Chr6g0457581 | 49.326 | 371 | 149 | 3 | 59 | 429 | 6 | 337 | 1.62e-127 | 372 |
| Msa0730270 | MtrunA17_Chr6g0460121 | 52.698 | 315 | 115 | 2 | 115 | 429 | 20 | 300 | 2.26e-118 | 347 |
| Msa0730270 | MtrunA17_Chr6g0484431 | 46.645 | 313 | 127 | 4 | 57 | 368 | 8 | 281 | 5.29e-101 | 302 |
| Msa0730270 | MtrunA17_Chr1g0212901 | 40.432 | 324 | 159 | 2 | 108 | 431 | 6 | 295 | 9.14e-85 | 262 |
| Msa0730270 | MtrunA17_Chr1g0195501 | 40.952 | 315 | 152 | 2 | 115 | 429 | 11 | 291 | 2.44e-80 | 251 |
| Msa0730270 | MtrunA17_Chr7g0269371 | 39.062 | 320 | 160 | 2 | 108 | 427 | 4 | 288 | 2.22e-77 | 244 |
| Msa0730270 | MtrunA17_Chr4g0047891 | 35.048 | 311 | 169 | 1 | 120 | 430 | 47 | 324 | 2.75e-63 | 207 |
| Msa0730270 | MtrunA17_Chr4g0071671 | 32.836 | 335 | 184 | 5 | 103 | 430 | 15 | 315 | 9.64e-51 | 174 |
| Msa0730270 | MtrunA17_Chr1g0199771 | 30.868 | 311 | 178 | 5 | 118 | 426 | 37 | 312 | 3.13e-47 | 165 |
| Msa0730270 | MtrunA17_Chr3g0140391 | 28.617 | 311 | 179 | 8 | 120 | 429 | 103 | 371 | 9.50e-32 | 124 |
| Msa0730270 | MtrunA17_Chr6g0479331 | 29.969 | 327 | 166 | 10 | 114 | 429 | 116 | 390 | 1.07e-28 | 116 |
| Msa0730270 | MtrunA17_Chr1g0209761 | 68.571 | 70 | 22 | 0 | 362 | 431 | 12 | 81 | 9.37e-27 | 102 |
| Msa0730270 | MtrunA17_Chr6g0484421 | 55.385 | 65 | 29 | 0 | 369 | 433 | 1 | 65 | 3.52e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730270 | AT1G77420.1 | 57.513 | 386 | 126 | 2 | 48 | 433 | 35 | 382 | 5.89e-162 | 461 |
| Msa0730270 | AT5G16120.3 | 54.496 | 367 | 128 | 3 | 61 | 427 | 10 | 337 | 9.68e-141 | 406 |
| Msa0730270 | AT5G16120.1 | 54.496 | 367 | 128 | 3 | 61 | 427 | 10 | 337 | 9.68e-141 | 406 |
| Msa0730270 | AT5G16120.4 | 54.496 | 367 | 128 | 3 | 61 | 427 | 42 | 369 | 1.02e-140 | 407 |
| Msa0730270 | AT5G16120.2 | 54.496 | 367 | 128 | 3 | 61 | 427 | 28 | 355 | 1.15e-140 | 407 |
| Msa0730270 | AT2G39410.2 | 40.673 | 327 | 160 | 2 | 103 | 429 | 2 | 294 | 1.50e-82 | 256 |
| Msa0730270 | AT2G39420.1 | 40.798 | 326 | 159 | 2 | 106 | 431 | 5 | 296 | 3.06e-82 | 256 |
| Msa0730270 | AT3G62860.1 | 40.000 | 315 | 154 | 2 | 115 | 429 | 12 | 291 | 3.92e-79 | 249 |
| Msa0730270 | AT2G47630.1 | 39.329 | 328 | 166 | 1 | 104 | 431 | 1 | 295 | 6.82e-79 | 248 |
| Msa0730270 | AT2G39400.1 | 41.083 | 314 | 151 | 2 | 118 | 431 | 11 | 290 | 3.61e-77 | 243 |
| Msa0730270 | AT3G55180.1 | 40.252 | 318 | 157 | 1 | 115 | 432 | 8 | 292 | 6.58e-77 | 242 |
| Msa0730270 | AT1G11090.1 | 40.064 | 312 | 154 | 1 | 120 | 431 | 38 | 316 | 1.04e-73 | 234 |
| Msa0730270 | AT3G62860.2 | 39.427 | 279 | 136 | 1 | 151 | 429 | 3 | 248 | 3.97e-68 | 219 |
| Msa0730270 | AT3G55190.1 | 36.000 | 325 | 173 | 3 | 108 | 431 | 7 | 297 | 5.28e-67 | 216 |
| Msa0730270 | AT2G47630.2 | 38.790 | 281 | 139 | 1 | 151 | 431 | 3 | 250 | 5.86e-63 | 206 |
| Msa0730270 | AT2G47630.3 | 39.852 | 271 | 130 | 1 | 161 | 431 | 33 | 270 | 1.53e-62 | 205 |
| Msa0730270 | AT2G39400.2 | 38.776 | 245 | 116 | 2 | 118 | 362 | 11 | 221 | 2.77e-51 | 173 |
| Msa0730270 | AT1G52760.1 | 31.642 | 335 | 188 | 5 | 103 | 430 | 24 | 324 | 4.35e-51 | 176 |
| Msa0730270 | AT5G14980.1 | 29.878 | 328 | 194 | 4 | 107 | 433 | 27 | 319 | 8.44e-50 | 172 |
| Msa0730270 | AT5G19290.1 | 29.573 | 328 | 196 | 3 | 107 | 433 | 27 | 320 | 1.17e-47 | 166 |
| Msa0730270 | AT5G11650.1 | 28.169 | 355 | 207 | 11 | 79 | 429 | 68 | 378 | 9.15e-30 | 119 |
| Msa0730270 | AT1G73480.1 | 27.796 | 313 | 181 | 8 | 120 | 430 | 194 | 463 | 2.49e-28 | 116 |
| Msa0730270 | AT1G18360.1 | 28.025 | 314 | 180 | 9 | 120 | 430 | 112 | 382 | 8.51e-27 | 111 |
| Msa0730270 | AT2G39410.1 | 43.396 | 106 | 59 | 1 | 104 | 209 | 3 | 107 | 1.88e-25 | 100 |
| Msa0730270 | AT5G11650.2 | 37.398 | 123 | 71 | 5 | 108 | 230 | 100 | 216 | 1.59e-14 | 74.3 |
Find 97 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGATCATTGCTTGTTTA+AGG | 0.083877 | 5_1:+39090104 | Msa0730270:CDS |
| CTTCAAAGGGTTGTTGTATA+TGG | 0.181103 | 5_1:-39089896 | None:intergenic |
| TTGTCTCATGGCTTGATTCT+AGG | 0.244614 | 5_1:+39093849 | Msa0730270:CDS |
| TCATCTTTCTAAGTCATTCT+TGG | 0.248561 | 5_1:+39093910 | Msa0730270:three_prime_UTR |
| AAATGGTTACCACTGCATTT+TGG | 0.257020 | 5_1:+39093784 | Msa0730270:CDS |
| CGATCCCTTTACATGAAGTT+TGG | 0.258584 | 5_1:+39092011 | Msa0730270:CDS |
| GCTATGGACTATCCAGGTTT+TGG | 0.259890 | 5_1:+39091078 | Msa0730270:CDS |
| ATTCTTCCCATTTCCTCTTC+TGG | 0.265727 | 5_1:-39092040 | None:intergenic |
| AAACCGGCATGGAACTTCTA+AGG | 0.285828 | 5_1:+39093509 | Msa0730270:CDS |
| GCACCATTATTGATTCTTCA+TGG | 0.293013 | 5_1:+39093674 | Msa0730270:CDS |
| TACAGAAATTTGCTCACTAA+TGG | 0.293286 | 5_1:-39093719 | None:intergenic |
| ACTTTAAAGCTCTATGAAAA+TGG | 0.295246 | 5_1:+39093767 | Msa0730270:CDS |
| TTCTTCCCATTTCCTCTTCT+GGG | 0.313438 | 5_1:-39092039 | None:intergenic |
| GTAATCTCACTTATAATATA+AGG | 0.314394 | 5_1:-39089734 | None:intergenic |
| ATTTGAAGGAGCCAGATAAT+TGG | 0.320173 | 5_1:+39091485 | Msa0730270:CDS |
| GAGCATTATACACAAATAAA+AGG | 0.327592 | 5_1:+39091162 | Msa0730270:CDS |
| CCCACTAAGTTTATTGATCA+TGG | 0.332184 | 5_1:+39089813 | Msa0730270:exon |
| TTTGGGAAGAGCTTTGCTTT+TGG | 0.337150 | 5_1:-39092436 | None:intergenic |
| AAACAAAGACCTTGCTGAAC+TGG | 0.340152 | 5_1:+39092456 | Msa0730270:CDS |
| AATAAACTTAGTGGGATATC+AGG | 0.347666 | 5_1:-39089805 | None:intergenic |
| AGAACCGAGTAAAAGAAAAT+TGG | 0.356076 | 5_1:+39092486 | Msa0730270:CDS |
| TAAAATAATAGTAACATTCT+TGG | 0.363572 | 5_1:+39093935 | Msa0730270:three_prime_UTR |
| TTACAATGTTATTTGTTATG+AGG | 0.365279 | 5_1:+39093471 | Msa0730270:CDS |
| AGTTCAGCAAGGTCTTTGTT+TGG | 0.377018 | 5_1:-39092454 | None:intergenic |
| ATCACAGCATCCCAATTATC+TGG | 0.383934 | 5_1:-39091496 | None:intergenic |
| TTCAAAGGGTTGTTGTATAT+GGG | 0.389599 | 5_1:-39089895 | None:intergenic |
| TTAGTTCCTTGTAATATGTA+AGG | 0.390594 | 5_1:+39091977 | Msa0730270:intron |
| GTTCAGCAAGGTCTTTGTTT+GGG | 0.393636 | 5_1:-39092453 | None:intergenic |
| ACATGCACATTCTTCTTTGA+AGG | 0.395509 | 5_1:+39090770 | Msa0730270:CDS |
| TCGACAAGATCATCGAAGTT+TGG | 0.400778 | 5_1:-39091129 | None:intergenic |
| TTCGCTTAAAGTTTATTTGA+AGG | 0.401747 | 5_1:+39091471 | Msa0730270:CDS |
| CATGATCGGAAGTTCCAAAA+TGG | 0.402850 | 5_1:-39089617 | None:intergenic |
| TTTGAAGGAGCCAGATAATT+GGG | 0.402919 | 5_1:+39091486 | Msa0730270:CDS |
| CGAGGTAATTCTCTCATATC+AGG | 0.408211 | 5_1:-39091415 | None:intergenic |
| GATCCCTTTACATGAAGTTT+GGG | 0.412991 | 5_1:+39092012 | Msa0730270:CDS |
| TCTTCACTCACACCTTCAAT+TGG | 0.413503 | 5_1:-39089997 | None:intergenic |
| GCGAGGAGAATTGCTGCATC+TGG | 0.415251 | 5_1:+39091042 | Msa0730270:CDS |
| AGGATGTTAAGTTCTTTGAT+TGG | 0.415918 | 5_1:-39089858 | None:intergenic |
| AGTTCTGTTGGGACAGTCAA+TGG | 0.418351 | 5_1:+39091438 | Msa0730270:CDS |
| AGAATGCTTTAGTGATGATC+TGG | 0.422433 | 5_1:+39092058 | Msa0730270:CDS |
| AACGCCTTCATTACTGCATC+AGG | 0.429805 | 5_1:-39092391 | None:intergenic |
| TGAAAGGAATTCGAGGGGAT+TGG | 0.432685 | 5_1:+39090667 | Msa0730270:CDS |
| AAACACACAGATGCCTTGAT+TGG | 0.446327 | 5_1:-39090728 | None:intergenic |
| AAAATAATAGTAACATTCTT+GGG | 0.450048 | 5_1:+39093936 | Msa0730270:three_prime_UTR |
| AAACCCAAACTTCATGTAAA+GGG | 0.451047 | 5_1:-39092015 | None:intergenic |
| GATAATCCGCGACTTAAAAC+CGG | 0.453023 | 5_1:+39093493 | Msa0730270:CDS |
| GCTCCATGAAGAATCAATAA+TGG | 0.456411 | 5_1:-39093677 | None:intergenic |
| AGGGTAATTGATTCTTCAAA+GGG | 0.459828 | 5_1:-39089909 | None:intergenic |
| GGAGCCTGATGATAGAATAA+AGG | 0.462466 | 5_1:+39093811 | Msa0730270:CDS |
| TCCATGATCAATAAACTTAG+TGG | 0.468452 | 5_1:-39089814 | None:intergenic |
| TCATAACAAATAACATTGTA+AGG | 0.471754 | 5_1:-39093469 | None:intergenic |
| AAGGGTAATTGATTCTTCAA+AGG | 0.472924 | 5_1:-39089910 | None:intergenic |
| AAGAGCTGGATGCCAGAGTC+AGG | 0.474264 | 5_1:+39090701 | Msa0730270:CDS |
| CTGTTGGGACAGTCAATGGG+TGG | 0.480192 | 5_1:+39091442 | Msa0730270:CDS |
| GTTGGGACAGTCAATGGGTG+GGG | 0.483592 | 5_1:+39091444 | Msa0730270:CDS |
| TTCTAGAATATGCAAAATCA+AGG | 0.484935 | 5_1:-39090044 | None:intergenic |
| AGAATTACCTCGAGTTCTGT+TGG | 0.487343 | 5_1:+39091426 | Msa0730270:CDS |
| GAATTACCTCGAGTTCTGTT+GGG | 0.487693 | 5_1:+39091427 | Msa0730270:CDS |
| TGCAATAAAATTGAAACTGA+AGG | 0.491095 | 5_1:-39094051 | None:intergenic |
| AAAACCCAAACTTCATGTAA+AGG | 0.492647 | 5_1:-39092016 | None:intergenic |
| TTGATTGGAGTTCCTGACTC+TGG | 0.493591 | 5_1:-39090713 | None:intergenic |
| ACAGCCTTTATTCTATCATC+AGG | 0.493837 | 5_1:-39093815 | None:intergenic |
| TTGTTGTATATGGGAGAGAA+AGG | 0.494964 | 5_1:-39089886 | None:intergenic |
| AAGAGAAAAGCACCAATTGA+AGG | 0.506066 | 5_1:+39089985 | Msa0730270:CDS |
| TATGGGAGAGAAAGGTATGA+AGG | 0.513732 | 5_1:-39089878 | None:intergenic |
| CGAAGACCTTACATATTACA+AGG | 0.514651 | 5_1:-39091983 | None:intergenic |
| AGAATGACTTAGAAAGATGA+AGG | 0.517898 | 5_1:-39093907 | None:intergenic |
| TTGTTAAGTAGTGGTATGAA+AGG | 0.518878 | 5_1:+39090651 | Msa0730270:intron |
| TCTTCTGCTCTGATTCCAGC+AGG | 0.519878 | 5_1:-39090496 | None:intergenic |
| CCTTCTGAAAGTCCAAAACC+TGG | 0.522547 | 5_1:-39091090 | None:intergenic |
| TGTTGGGACAGTCAATGGGT+GGG | 0.525935 | 5_1:+39091443 | Msa0730270:CDS |
| CGAGGAGAATTGCTGCATCT+GGG | 0.538646 | 5_1:+39091043 | Msa0730270:CDS |
| GTTCTGTTGGGACAGTCAAT+GGG | 0.540122 | 5_1:+39091439 | Msa0730270:CDS |
| TCAATGAAATGAAAGAGCTA+TGG | 0.540566 | 5_1:-39089642 | None:intergenic |
| CACCCTTAGAAGTTCCATGC+CGG | 0.547785 | 5_1:-39093512 | None:intergenic |
| AATTGAGTCAAAAGTAGAGA+AGG | 0.554168 | 5_1:+39093543 | Msa0730270:CDS |
| GGACTTTCAGAAGGATTGCA+TGG | 0.558308 | 5_1:+39091099 | Msa0730270:CDS |
| ACCACCTGATGCAGTAATGA+AGG | 0.558767 | 5_1:+39092387 | Msa0730270:CDS |
| AATGAGCTTACTTTACACAT+TGG | 0.565047 | 5_1:-39091529 | None:intergenic |
| AGAGTCAGGAACTCCAATCA+AGG | 0.570762 | 5_1:+39090715 | Msa0730270:CDS |
| TCTTCATGGAGCAGCAGACA+AGG | 0.573213 | 5_1:+39093688 | Msa0730270:CDS |
| AACCGGCATGGAACTTCTAA+GGG | 0.578665 | 5_1:+39093510 | Msa0730270:CDS |
| ATGTTCACATATCACAATGA+AGG | 0.579876 | 5_1:-39093978 | None:intergenic |
| GTGGTATGAAAGGAATTCGA+GGG | 0.591527 | 5_1:+39090661 | Msa0730270:intron |
| AAAGAGCTATGGTCCATGAT+CGG | 0.594161 | 5_1:-39089631 | None:intergenic |
| TCCGCGACTTAAAACCGGCA+TGG | 0.596716 | 5_1:+39093498 | Msa0730270:CDS |
| CTCTGAAAGCCAGTTCAGCA+AGG | 0.602732 | 5_1:-39092465 | None:intergenic |
| GTATGAAAATGCATCTAGCA+AGG | 0.604169 | 5_1:+39093739 | Msa0730270:CDS |
| CCATGATCAATAAACTTAGT+GGG | 0.608766 | 5_1:-39089813 | None:intergenic |
| TACATGATGACATTGTCTCA+TGG | 0.609492 | 5_1:+39093837 | Msa0730270:CDS |
| CAAACTTCATGTAAAGGGAT+CGG | 0.613457 | 5_1:-39092010 | None:intergenic |
| AGTGGTATGAAAGGAATTCG+AGG | 0.622926 | 5_1:+39090660 | Msa0730270:intron |
| TGGTATGAAAGGAATTCGAG+GGG | 0.632293 | 5_1:+39090662 | Msa0730270:CDS |
| GACTGTCCCAACAGAACTCG+AGG | 0.633406 | 5_1:-39091433 | None:intergenic |
| GCCTTCATTACTGCATCAGG+TGG | 0.660106 | 5_1:-39092388 | None:intergenic |
| ATAATAGTAACATTCTTGGG+TGG | 0.670685 | 5_1:+39093939 | Msa0730270:three_prime_UTR |
| GCTCCCCTTCCAAAATGCAG+TGG | 0.682014 | 5_1:-39093793 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAATATAATTATATGTAT+CGG | - | chr5_1:39090308-39090327 | None:intergenic | 10.0% |
| !! | TTAAATCTATATTGTAATAA+TGG | + | chr5_1:39092622-39092641 | Msa0730270:intron | 10.0% |
| !! | AAAAAAAAAATGAATTTGTA+TGG | + | chr5_1:39093627-39093646 | Msa0730270:intron | 10.0% |
| !! | ATAAAAAATAAAAAACTCCA+AGG | - | chr5_1:39090192-39090211 | None:intergenic | 15.0% |
| !! | TTTATAAGTAAATGTTAGTT+TGG | + | chr5_1:39090207-39090226 | Msa0730270:intron | 15.0% |
| !! | ACACAAAATAAAATAGAAAT+GGG | - | chr5_1:39090412-39090431 | None:intergenic | 15.0% |
| !! | TACACAAAATAAAATAGAAA+TGG | - | chr5_1:39090413-39090432 | None:intergenic | 15.0% |
| !!! | ATTTGTTGAACATAATAAAA+CGG | - | chr5_1:39090541-39090560 | None:intergenic | 15.0% |
| !!! | TAACTTTTATTTTGTTTGAT+TGG | + | chr5_1:39090592-39090611 | Msa0730270:intron | 15.0% |
| !!! | TGAAAATGTTTCTTTTATAA+TGG | + | chr5_1:39090860-39090879 | Msa0730270:intron | 15.0% |
| !! | TAAAAAATCAAAAAGTGAAT+AGG | - | chr5_1:39091012-39091031 | None:intergenic | 15.0% |
| !!! | TCTATTTTCTCAAATATTAT+TGG | - | chr5_1:39091270-39091289 | None:intergenic | 15.0% |
| !! | ATTAAACATAATGGTATTAT+TGG | + | chr5_1:39091666-39091685 | Msa0730270:intron | 15.0% |
| !!! | TGAAAAAAAGTTGTTATTAA+AGG | - | chr5_1:39093103-39093122 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTCATTTATTTTG+TGG | + | chr5_1:39093112-39093131 | Msa0730270:intron | 15.0% |
| !! | TAAAATAATAGTAACATTCT+TGG | + | chr5_1:39093935-39093954 | Msa0730270:three_prime_UTR | 15.0% |
| !! | AAAATAATAGTAACATTCTT+GGG | + | chr5_1:39093936-39093955 | Msa0730270:three_prime_UTR | 15.0% |
| !!! | ATTTCTTTGTGCAAAATTTT+AGG | + | chr5_1:39089693-39089712 | Msa0730270:intron | 20.0% |
| !! | GTAATCTCACTTATAATATA+AGG | - | chr5_1:39089737-39089756 | None:intergenic | 20.0% |
| !!! | TTATTGAGTTTTGTTGTAAA+GGG | - | chr5_1:39089931-39089950 | None:intergenic | 20.0% |
| !!! | ATTATTGAGTTTTGTTGTAA+AGG | - | chr5_1:39089932-39089951 | None:intergenic | 20.0% |
| !!! | TGATTTTATTTGTTAAGTAG+TGG | + | chr5_1:39090642-39090661 | Msa0730270:intron | 20.0% |
| !!! | TTTTGAAGTTTCTTAAAAGT+CGG | + | chr5_1:39090947-39090966 | Msa0730270:intron | 20.0% |
| !!! | CACTTTTTGATTTTTTATTC+AGG | + | chr5_1:39091015-39091034 | Msa0730270:intron | 20.0% |
| !! | AGAGTCTATATTAAACATAA+TGG | + | chr5_1:39091657-39091676 | Msa0730270:intron | 20.0% |
| !! | TAAAATAATCTGATACATCT+CGG | - | chr5_1:39092242-39092261 | None:intergenic | 20.0% |
| !! | TCTACTCATAATAAAATAAC+TGG | - | chr5_1:39092888-39092907 | None:intergenic | 20.0% |
| !!! | TCTGATAATTTTCATCTAAT+TGG | + | chr5_1:39092918-39092937 | Msa0730270:intron | 20.0% |
| !! | TTAATAGAAATAGAAGATGA+AGG | - | chr5_1:39093039-39093058 | None:intergenic | 20.0% |
| !!! | AACTTTAAATCTTTTCACAA+AGG | - | chr5_1:39093169-39093188 | None:intergenic | 20.0% |
| !! | ATCCTAATGTTATTCATTAT+AGG | + | chr5_1:39093444-39093463 | Msa0730270:intron | 20.0% |
| !! | TCATAACAAATAACATTGTA+AGG | - | chr5_1:39093472-39093491 | None:intergenic | 20.0% |
| !!! | TTACAATGTTATTTGTTATG+AGG | + | chr5_1:39093471-39093490 | Msa0730270:CDS | 20.0% |
| !! | TACGACAATGATTATAAAAA+AGG | - | chr5_1:39093596-39093615 | None:intergenic | 20.0% |
| !!! | ACAATTTTTTTCATCTTTAG+AGG | + | chr5_1:39094002-39094021 | Msa0730270:three_prime_UTR | 20.0% |
| !!! | TTCTAGAATATGCAAAATCA+AGG | - | chr5_1:39090047-39090066 | None:intergenic | 25.0% |
| !!! | ATTTTGCATATTCTAGAAGA+AGG | + | chr5_1:39090049-39090068 | Msa0730270:CDS | 25.0% |
| !!! | TTTTGCATATTCTAGAAGAA+GGG | + | chr5_1:39090050-39090069 | Msa0730270:CDS | 25.0% |
| ! | AAAATAAAAAACTCCAAGGA+TGG | - | chr5_1:39090188-39090207 | None:intergenic | 25.0% |
| !! | ATAATTATATGTATCGGTGT+CGG | - | chr5_1:39090302-39090321 | None:intergenic | 25.0% |
| !! | GTTTCTTTTATAATGGTCTT+TGG | + | chr5_1:39090867-39090886 | Msa0730270:intron | 25.0% |
| ! | TCTTTGGATGTTTGTTTATA+GGG | + | chr5_1:39090883-39090902 | Msa0730270:intron | 25.0% |
| ! | TGATTCATTGTGTGAAAATT+GGG | + | chr5_1:39090913-39090932 | Msa0730270:intron | 25.0% |
| !! | TTTGAAGTTTCTTAAAAGTC+GGG | + | chr5_1:39090948-39090967 | Msa0730270:intron | 25.0% |
| ! | GAGCATTATACACAAATAAA+AGG | + | chr5_1:39091162-39091181 | Msa0730270:CDS | 25.0% |
| ! | TTCGCTTAAAGTTTATTTGA+AGG | + | chr5_1:39091471-39091490 | Msa0730270:CDS | 25.0% |
| ! | TAATCTGTTTGCTTATTAAC+TGG | + | chr5_1:39091731-39091750 | Msa0730270:intron | 25.0% |
| ! | ATTAATCTATACCTCTGTTA+AGG | + | chr5_1:39091757-39091776 | Msa0730270:intron | 25.0% |
| ! | TTAGTTCCTTGTAATATGTA+AGG | + | chr5_1:39091977-39091996 | Msa0730270:intron | 25.0% |
| ! | TTAGAAATGCATATTATGAC+CGG | - | chr5_1:39092162-39092181 | None:intergenic | 25.0% |
| !! | CTAACCAATTTTCTTTTACT+CGG | - | chr5_1:39092493-39092512 | None:intergenic | 25.0% |
| ! | CAGCATATAAAAGATCAAAA+TGG | - | chr5_1:39092814-39092833 | None:intergenic | 25.0% |
| ! | TTGGAATTTAAGAATCTGTT+TGG | + | chr5_1:39092937-39092956 | Msa0730270:intron | 25.0% |
| ! | ATTTCTATTAACTCTGTTGA+TGG | + | chr5_1:39093048-39093067 | Msa0730270:intron | 25.0% |
| ! | AGCTTGATATATATAGTCTT+TGG | + | chr5_1:39093280-39093299 | Msa0730270:intron | 25.0% |
| ! | GCTTGATATATATAGTCTTT+GGG | + | chr5_1:39093281-39093300 | Msa0730270:intron | 25.0% |
| ! | CTTGATATATATAGTCTTTG+GGG | + | chr5_1:39093282-39093301 | Msa0730270:intron | 25.0% |
| ! | AGCCTATAATGAATAACATT+AGG | - | chr5_1:39093449-39093468 | None:intergenic | 25.0% |
| ! | AATGAATTTGTATGGTTGAT+TGG | + | chr5_1:39093635-39093654 | Msa0730270:intron | 25.0% |
| !!! | ACTTTAAAGCTCTATGAAAA+TGG | + | chr5_1:39093767-39093786 | Msa0730270:CDS | 25.0% |
| !!! | AATTAAGTGAGATTTTTCAG+TGG | + | chr5_1:39093877-39093896 | Msa0730270:exon | 25.0% |
| ! | TGCAATAAAATTGAAACTGA+AGG | - | chr5_1:39094054-39094073 | None:intergenic | 25.0% |
| TCAATGAAATGAAAGAGCTA+TGG | - | chr5_1:39089645-39089664 | None:intergenic | 30.0% | |
| AATAAACTTAGTGGGATATC+AGG | - | chr5_1:39089808-39089827 | None:intergenic | 30.0% | |
| CCATGATCAATAAACTTAGT+GGG | - | chr5_1:39089816-39089835 | None:intergenic | 30.0% | |
| TCCATGATCAATAAACTTAG+TGG | - | chr5_1:39089817-39089836 | None:intergenic | 30.0% | |
| AGGATGTTAAGTTCTTTGAT+TGG | - | chr5_1:39089861-39089880 | None:intergenic | 30.0% | |
| TTCAAAGGGTTGTTGTATAT+GGG | - | chr5_1:39089898-39089917 | None:intergenic | 30.0% | |
| ! | AGGGTAATTGATTCTTCAAA+GGG | - | chr5_1:39089912-39089931 | None:intergenic | 30.0% |
| ! | AAGGGTAATTGATTCTTCAA+AGG | - | chr5_1:39089913-39089932 | None:intergenic | 30.0% |
| !!! | ACTGTTAGTTTTGTTGTCTT+TGG | - | chr5_1:39089958-39089977 | None:intergenic | 30.0% |
| ATTGTTTATGTTTCCATCCT+TGG | + | chr5_1:39090172-39090191 | Msa0730270:intron | 30.0% | |
| GTCAACGCTGATAATAATTT+AGG | - | chr5_1:39090343-39090362 | None:intergenic | 30.0% | |
| TGATTCTTCAACAAAGCTAT+AGG | - | chr5_1:39090436-39090455 | None:intergenic | 30.0% | |
| TTGTTAAGTAGTGGTATGAA+AGG | + | chr5_1:39090651-39090670 | Msa0730270:intron | 30.0% | |
| TCTATGTTATCAGACAACAT+AGG | + | chr5_1:39090801-39090820 | Msa0730270:intron | 30.0% | |
| GTCTTTGGATGTTTGTTTAT+AGG | + | chr5_1:39090882-39090901 | Msa0730270:intron | 30.0% | |
| GTGATTCATTGTGTGAAAAT+TGG | + | chr5_1:39090912-39090931 | Msa0730270:intron | 30.0% | |
| TTGAAGTTTCTTAAAAGTCG+GGG | + | chr5_1:39090949-39090968 | Msa0730270:intron | 30.0% | |
| TTCGACGAAAGTTACAATTT+CGG | + | chr5_1:39090977-39090996 | Msa0730270:intron | 30.0% | |
| AATGAGCTTACTTTACACAT+TGG | - | chr5_1:39091532-39091551 | None:intergenic | 30.0% | |
| ATAATGAAGTTGTTGAGCAT+TGG | - | chr5_1:39091572-39091591 | None:intergenic | 30.0% | |
| CTCAAAAGTCATACTGTTAT+AGG | + | chr5_1:39091706-39091725 | Msa0730270:intron | 30.0% | |
| GTCATAATTTGAATGCTAAG+TGG | + | chr5_1:39091785-39091804 | Msa0730270:intron | 30.0% | |
| GTTCAACTTTCCTATAGATT+GGG | - | chr5_1:39091811-39091830 | None:intergenic | 30.0% | |
| AGTTCAACTTTCCTATAGAT+TGG | - | chr5_1:39091812-39091831 | None:intergenic | 30.0% | |
| GTCATGCTTTCTATGAAATA+AGG | - | chr5_1:39091918-39091937 | None:intergenic | 30.0% | |
| AAGAGGTCAAATATGTTTGT+TGG | + | chr5_1:39091947-39091966 | Msa0730270:intron | 30.0% | |
| AAACCCAAACTTCATGTAAA+GGG | - | chr5_1:39092018-39092037 | None:intergenic | 30.0% | |
| AAAACCCAAACTTCATGTAA+AGG | - | chr5_1:39092019-39092038 | None:intergenic | 30.0% | |
| CTGATACGTCACAATTTAAA+GGG | - | chr5_1:39092294-39092313 | None:intergenic | 30.0% | |
| ACTGATACGTCACAATTTAA+AGG | - | chr5_1:39092295-39092314 | None:intergenic | 30.0% | |
| AGAACCGAGTAAAAGAAAAT+TGG | + | chr5_1:39092486-39092505 | Msa0730270:CDS | 30.0% | |
| GAAATCATATGCAAGAGAAA+TGG | - | chr5_1:39092542-39092561 | None:intergenic | 30.0% | |
| TTATTAAGTGCAACATGCAA+AGG | - | chr5_1:39092765-39092784 | None:intergenic | 30.0% | |
| CACTTAATAATAGACCATGT+AGG | + | chr5_1:39092775-39092794 | Msa0730270:intron | 30.0% | |
| ATAGACCCTTATTATCTTCA+TGG | + | chr5_1:39092843-39092862 | Msa0730270:intron | 30.0% | |
| TCTGACCATGAAGATAATAA+GGG | - | chr5_1:39092851-39092870 | None:intergenic | 30.0% | |
| ATCTGACCATGAAGATAATA+AGG | - | chr5_1:39092852-39092871 | None:intergenic | 30.0% | |
| GCTCTATATAAGAGATGAAA+TGG | - | chr5_1:39092981-39093000 | None:intergenic | 30.0% | |
| ! | TGGATCTACTTTAACAGTTT+TGG | + | chr5_1:39093068-39093087 | Msa0730270:intron | 30.0% |
| !!! | GAAAATTAGCTTTTCAACCT+TGG | + | chr5_1:39093250-39093269 | Msa0730270:intron | 30.0% |
| AGACTATATATATCAAGCTC+AGG | - | chr5_1:39093279-39093298 | None:intergenic | 30.0% | |
| AATTGAGTCAAAAGTAGAGA+AGG | + | chr5_1:39093543-39093562 | Msa0730270:CDS | 30.0% | |
| ! | TACAGAAATTTGCTCACTAA+TGG | - | chr5_1:39093722-39093741 | None:intergenic | 30.0% |
| AGAATGACTTAGAAAGATGA+AGG | - | chr5_1:39093910-39093929 | None:intergenic | 30.0% | |
| TCATCTTTCTAAGTCATTCT+TGG | + | chr5_1:39093910-39093929 | Msa0730270:three_prime_UTR | 30.0% | |
| ATAATAGTAACATTCTTGGG+TGG | + | chr5_1:39093939-39093958 | Msa0730270:three_prime_UTR | 30.0% | |
| ATGTTCACATATCACAATGA+AGG | - | chr5_1:39093981-39094000 | None:intergenic | 30.0% | |
| CCCACTAAGTTTATTGATCA+TGG | + | chr5_1:39089813-39089832 | Msa0730270:exon | 35.0% | |
| TTGTTGTATATGGGAGAGAA+AGG | - | chr5_1:39089889-39089908 | None:intergenic | 35.0% | |
| CTTCAAAGGGTTGTTGTATA+TGG | - | chr5_1:39089899-39089918 | None:intergenic | 35.0% | |
| !! | AAGAGAAAAGCACCAATTGA+AGG | + | chr5_1:39089985-39090004 | Msa0730270:CDS | 35.0% |
| GCTTGATCATTGCTTGTTTA+AGG | + | chr5_1:39090104-39090123 | Msa0730270:CDS | 35.0% | |
| ! | TTTTCATCTTGACCAATGTC+AGG | + | chr5_1:39090143-39090162 | Msa0730270:intron | 35.0% |
| !! | TTCTTTGATCTGTTTTTCCC+AGG | + | chr5_1:39090468-39090487 | Msa0730270:intron | 35.0% |
| !! | GTGTGTTTTTGTCATGGATA+TGG | + | chr5_1:39090743-39090762 | Msa0730270:CDS | 35.0% |
| ACATGCACATTCTTCTTTGA+AGG | + | chr5_1:39090770-39090789 | Msa0730270:CDS | 35.0% | |
| TGAAGTTTCTTAAAAGTCGG+GGG | + | chr5_1:39090950-39090969 | Msa0730270:intron | 35.0% | |
| TCGACGAAAGTTACAATTTC+GGG | + | chr5_1:39090978-39090997 | Msa0730270:intron | 35.0% | |
| !!! | TTTTTTATTCAGGTGTTGCG+AGG | + | chr5_1:39091025-39091044 | Msa0730270:intron | 35.0% |
| TCAACAGACACACCTATAAT+CGG | + | chr5_1:39091318-39091337 | Msa0730270:intron | 35.0% | |
| ATTTGAAGGAGCCAGATAAT+TGG | + | chr5_1:39091485-39091504 | Msa0730270:CDS | 35.0% | |
| TTTGAAGGAGCCAGATAATT+GGG | + | chr5_1:39091486-39091505 | Msa0730270:CDS | 35.0% | |
| ! | CATTGGTAACAATACAAACG+AGG | - | chr5_1:39091555-39091574 | None:intergenic | 35.0% |
| TATGACAAAGTCCTTAACAG+AGG | - | chr5_1:39091771-39091790 | None:intergenic | 35.0% | |
| CGAAGACCTTACATATTACA+AGG | - | chr5_1:39091986-39092005 | None:intergenic | 35.0% | |
| CAAACTTCATGTAAAGGGAT+CGG | - | chr5_1:39092013-39092032 | None:intergenic | 35.0% | |
| GATCCCTTTACATGAAGTTT+GGG | + | chr5_1:39092012-39092031 | Msa0730270:CDS | 35.0% | |
| AGAATGCTTTAGTGATGATC+TGG | + | chr5_1:39092058-39092077 | Msa0730270:CDS | 35.0% | |
| ! | TCGTCGAGATGTTAACATTT+TGG | + | chr5_1:39092118-39092137 | Msa0730270:intron | 35.0% |
| ! | AGATGTTAACATTTTGGACC+CGG | + | chr5_1:39092124-39092143 | Msa0730270:intron | 35.0% |
| TGAAGATGCAGATCATGTTA+AGG | + | chr5_1:39092197-39092216 | Msa0730270:intron | 35.0% | |
| TGACGTATCAGTTTAACAGT+TGG | + | chr5_1:39092303-39092322 | Msa0730270:intron | 35.0% | |
| ! | TTGAATTTGCTCTCCAGATA+TGG | + | chr5_1:39092666-39092685 | Msa0730270:intron | 35.0% |
| ! | TGGCGACAATGTTGATATTT+TGG | - | chr5_1:39092704-39092723 | None:intergenic | 35.0% |
| GTAGTTTACGACTACAGATA+TGG | - | chr5_1:39092724-39092743 | None:intergenic | 35.0% | |
| !! | GTTTTAGATTGTAGCCTACA+TGG | - | chr5_1:39092792-39092811 | None:intergenic | 35.0% |
| TTTCAACCAAGTGACTTCTA+GGG | - | chr5_1:39093234-39093253 | None:intergenic | 35.0% | |
| ! | TTTTCAACCAAGTGACTTCT+AGG | - | chr5_1:39093235-39093254 | None:intergenic | 35.0% |
| !! | CAATGTTTTATTGCCTTGCA+TGG | + | chr5_1:39093363-39093382 | Msa0730270:intron | 35.0% |
| ATGGTTGATTGGATTATGTC+AGG | + | chr5_1:39093646-39093665 | Msa0730270:intron | 35.0% | |
| !! | GCACCATTATTGATTCTTCA+TGG | + | chr5_1:39093674-39093693 | Msa0730270:CDS | 35.0% |
| GCTCCATGAAGAATCAATAA+TGG | - | chr5_1:39093680-39093699 | None:intergenic | 35.0% | |
| GTATGAAAATGCATCTAGCA+AGG | + | chr5_1:39093739-39093758 | Msa0730270:CDS | 35.0% | |
| ! | AAATGGTTACCACTGCATTT+TGG | + | chr5_1:39093784-39093803 | Msa0730270:CDS | 35.0% |
| ACAGCCTTTATTCTATCATC+AGG | - | chr5_1:39093818-39093837 | None:intergenic | 35.0% | |
| TACATGATGACATTGTCTCA+TGG | + | chr5_1:39093837-39093856 | Msa0730270:CDS | 35.0% | |
| CATGATCGGAAGTTCCAAAA+TGG | - | chr5_1:39089620-39089639 | None:intergenic | 40.0% | |
| !!! | CATTTTGGAACTTCCGATCA+TGG | + | chr5_1:39089618-39089637 | Msa0730270:five_prime_UTR | 40.0% |
| AAAGAGCTATGGTCCATGAT+CGG | - | chr5_1:39089634-39089653 | None:intergenic | 40.0% | |
| ! | TATGGGAGAGAAAGGTATGA+AGG | - | chr5_1:39089881-39089900 | None:intergenic | 40.0% |
| TCTTCACTCACACCTTCAAT+TGG | - | chr5_1:39090000-39090019 | None:intergenic | 40.0% | |
| ! | AACAATCTGAAGCCTGACAT+TGG | - | chr5_1:39090158-39090177 | None:intergenic | 40.0% |
| ! | TTTGAAGCACGTATACTCCT+AGG | + | chr5_1:39090234-39090253 | Msa0730270:intron | 40.0% |
| ! | CTGAGGAGTATGTGTTTCAT+AGG | + | chr5_1:39090367-39090386 | Msa0730270:intron | 40.0% |
| GGAGTATGTGTTTCATAGGT+TGG | + | chr5_1:39090371-39090390 | Msa0730270:intron | 40.0% | |
| AGTGGTATGAAAGGAATTCG+AGG | + | chr5_1:39090660-39090679 | Msa0730270:intron | 40.0% | |
| GTGGTATGAAAGGAATTCGA+GGG | + | chr5_1:39090661-39090680 | Msa0730270:intron | 40.0% | |
| TGGTATGAAAGGAATTCGAG+GGG | + | chr5_1:39090662-39090681 | Msa0730270:CDS | 40.0% | |
| ! | TGGAAATTTTCTGCAAGAGC+TGG | + | chr5_1:39090687-39090706 | Msa0730270:CDS | 40.0% |
| AAACACACAGATGCCTTGAT+TGG | - | chr5_1:39090731-39090750 | None:intergenic | 40.0% | |
| !! | GCATCTGTGTGTTTTTGTCA+TGG | + | chr5_1:39090737-39090756 | Msa0730270:CDS | 40.0% |
| CATTGTGTGAAAATTGGGTG+TGG | + | chr5_1:39090918-39090937 | Msa0730270:intron | 40.0% | |
| GAAGTTTCTTAAAAGTCGGG+GGG | + | chr5_1:39090951-39090970 | Msa0730270:intron | 40.0% | |
| AAGTTTCTTAAAAGTCGGGG+GGG | + | chr5_1:39090952-39090971 | Msa0730270:intron | 40.0% | |
| !!! | TGGGTATGCTGTTTTTGCTA+TGG | + | chr5_1:39091062-39091081 | Msa0730270:CDS | 40.0% |
| !! | GTTTTTGCTATGGACTATCC+AGG | + | chr5_1:39091072-39091091 | Msa0730270:CDS | 40.0% |
| TCGACAAGATCATCGAAGTT+TGG | - | chr5_1:39091132-39091151 | None:intergenic | 40.0% | |
| ! | CAGTTTCAAGTGTAGTGTCA+GGG | - | chr5_1:39091238-39091257 | None:intergenic | 40.0% |
| ! | TCAGTTTCAAGTGTAGTGTC+AGG | - | chr5_1:39091239-39091258 | None:intergenic | 40.0% |
| CTGGATAGGTTTCAAAGACA+TGG | + | chr5_1:39091352-39091371 | Msa0730270:intron | 40.0% | |
| CGAGGTAATTCTCTCATATC+AGG | - | chr5_1:39091418-39091437 | None:intergenic | 40.0% | |
| AGAATTACCTCGAGTTCTGT+TGG | + | chr5_1:39091426-39091445 | Msa0730270:CDS | 40.0% | |
| GAATTACCTCGAGTTCTGTT+GGG | + | chr5_1:39091427-39091446 | Msa0730270:CDS | 40.0% | |
| ATCACAGCATCCCAATTATC+TGG | - | chr5_1:39091499-39091518 | None:intergenic | 40.0% | |
| ATCATGTGAGATGTGATACG+TGG | + | chr5_1:39091839-39091858 | Msa0730270:intron | 40.0% | |
| TCATGTGAGATGTGATACGT+GGG | + | chr5_1:39091840-39091859 | Msa0730270:intron | 40.0% | |
| TTCCTTGAACCTTGTAACCT+AGG | + | chr5_1:39091866-39091885 | Msa0730270:intron | 40.0% | |
| TCCTTGAACCTTGTAACCTA+GGG | + | chr5_1:39091867-39091886 | Msa0730270:intron | 40.0% | |
| AGCATGACAGAGAAAGAAAG+AGG | + | chr5_1:39091930-39091949 | Msa0730270:intron | 40.0% | |
| CGATCCCTTTACATGAAGTT+TGG | + | chr5_1:39092011-39092030 | Msa0730270:CDS | 40.0% | |
| ! | GTTTTCCCAGAAGAGGAAAT+GGG | + | chr5_1:39092034-39092053 | Msa0730270:CDS | 40.0% |
| TTCTTCCCATTTCCTCTTCT+GGG | - | chr5_1:39092042-39092061 | None:intergenic | 40.0% | |
| ATTCTTCCCATTTCCTCTTC+TGG | - | chr5_1:39092043-39092062 | None:intergenic | 40.0% | |
| TGACCGGTCAATATTGAATC+CGG | - | chr5_1:39092146-39092165 | None:intergenic | 40.0% | |
| CGTATCAGTTTAACAGTTGG+AGG | + | chr5_1:39092306-39092325 | Msa0730270:intron | 40.0% | |
| ACATCATCTGCAATCTTACC+AGG | - | chr5_1:39092364-39092383 | None:intergenic | 40.0% | |
| ! | TTTGGGAAGAGCTTTGCTTT+TGG | - | chr5_1:39092439-39092458 | None:intergenic | 40.0% |
| ! | GTTCAGCAAGGTCTTTGTTT+GGG | - | chr5_1:39092456-39092475 | None:intergenic | 40.0% |
| AGTTCAGCAAGGTCTTTGTT+TGG | - | chr5_1:39092457-39092476 | None:intergenic | 40.0% | |
| AAACAAAGACCTTGCTGAAC+TGG | + | chr5_1:39092456-39092475 | Msa0730270:CDS | 40.0% | |
| ! | ATAGAAGATGAAGGCATGCT+TGG | - | chr5_1:39093030-39093049 | None:intergenic | 40.0% |
| GTTTAAGCTGAGTGACTAGT+AGG | - | chr5_1:39093344-39093363 | None:intergenic | 40.0% | |
| ATCCAAAATGTTGCCATGCA+AGG | - | chr5_1:39093379-39093398 | None:intergenic | 40.0% | |
| GATAATCCGCGACTTAAAAC+CGG | + | chr5_1:39093493-39093512 | Msa0730270:CDS | 40.0% | |
| !! | GTTACCACTGCATTTTGGAA+GGG | + | chr5_1:39093789-39093808 | Msa0730270:CDS | 40.0% |
| !! | TTACCACTGCATTTTGGAAG+GGG | + | chr5_1:39093790-39093809 | Msa0730270:CDS | 40.0% |
| GGAGCCTGATGATAGAATAA+AGG | + | chr5_1:39093811-39093830 | Msa0730270:CDS | 40.0% | |
| TTGTCTCATGGCTTGATTCT+AGG | + | chr5_1:39093849-39093868 | Msa0730270:CDS | 40.0% | |
| GCACGTATACTCCTAGGATT+AGG | + | chr5_1:39090240-39090259 | Msa0730270:intron | 45.0% | |
| TGAAAGGAATTCGAGGGGAT+TGG | + | chr5_1:39090667-39090686 | Msa0730270:CDS | 45.0% | |
| TTGATTGGAGTTCCTGACTC+TGG | - | chr5_1:39090716-39090735 | None:intergenic | 45.0% | |
| AGAGTCAGGAACTCCAATCA+AGG | + | chr5_1:39090715-39090734 | Msa0730270:CDS | 45.0% | |
| !! | GCTATGGACTATCCAGGTTT+TGG | + | chr5_1:39091078-39091097 | Msa0730270:CDS | 45.0% |
| ! | CCTTCTGAAAGTCCAAAACC+TGG | - | chr5_1:39091093-39091112 | None:intergenic | 45.0% |
| !!! | CCAGGTTTTGGACTTTCAGA+AGG | + | chr5_1:39091090-39091109 | Msa0730270:CDS | 45.0% |
| GGACTTTCAGAAGGATTGCA+TGG | + | chr5_1:39091099-39091118 | Msa0730270:CDS | 45.0% | |
| ! | TGTCTGTTGACTGACACACA+TGG | - | chr5_1:39091308-39091327 | None:intergenic | 45.0% |
| ACAGACACACCTATAATCGG+AGG | + | chr5_1:39091321-39091340 | Msa0730270:intron | 45.0% | |
| ! | ACACCTATAATCGGAGGTGT+CGG | + | chr5_1:39091327-39091346 | Msa0730270:intron | 45.0% |
| AGTTCTGTTGGGACAGTCAA+TGG | + | chr5_1:39091438-39091457 | Msa0730270:CDS | 45.0% | |
| GTTCTGTTGGGACAGTCAAT+GGG | + | chr5_1:39091439-39091458 | Msa0730270:CDS | 45.0% | |
| TGCTAAGTGGCCCAATCTAT+AGG | + | chr5_1:39091798-39091817 | Msa0730270:intron | 45.0% | |
| CATGTGAGATGTGATACGTG+GGG | + | chr5_1:39091841-39091860 | Msa0730270:intron | 45.0% | |
| TCCCTAGGTTACAAGGTTCA+AGG | - | chr5_1:39091871-39091890 | None:intergenic | 45.0% | |
| ACAAGTTTCAGTAGCTCCCT+AGG | - | chr5_1:39091886-39091905 | None:intergenic | 45.0% | |
| !! | AGTTTGGGTTTTCCCAGAAG+AGG | + | chr5_1:39092027-39092046 | Msa0730270:CDS | 45.0% |
| ! | GGTTTTCCCAGAAGAGGAAA+TGG | + | chr5_1:39092033-39092052 | Msa0730270:CDS | 45.0% |
| GACCCGGATTCAATATTGAC+CGG | + | chr5_1:39092140-39092159 | Msa0730270:intron | 45.0% | |
| GACCGGTCAATATTGAATCC+GGG | - | chr5_1:39092145-39092164 | None:intergenic | 45.0% | |
| !! | GACTTGCTGATTTGTGTTCC+TGG | + | chr5_1:39092343-39092362 | Msa0730270:intron | 45.0% |
| ACCACCTGATGCAGTAATGA+AGG | + | chr5_1:39092387-39092406 | Msa0730270:CDS | 45.0% | |
| AACGCCTTCATTACTGCATC+AGG | - | chr5_1:39092394-39092413 | None:intergenic | 45.0% | |
| TTGCTCTCCAGATATGGTTG+TGG | + | chr5_1:39092672-39092691 | Msa0730270:intron | 45.0% | |
| GAAGTCTCCACAACCATATC+TGG | - | chr5_1:39092682-39092701 | None:intergenic | 45.0% | |
| CAACATGCAAAGGATCGTCA+TGG | - | chr5_1:39092755-39092774 | None:intergenic | 45.0% | |
| ! | CAAGTGACTTCTAGGGAAAC+TGG | - | chr5_1:39093227-39093246 | None:intergenic | 45.0% |
| CAGTTTCCCTAGAAGTCACT+TGG | + | chr5_1:39093225-39093244 | Msa0730270:intron | 45.0% | |
| ATATCAAGCTCAGGTCACCA+AGG | - | chr5_1:39093270-39093289 | None:intergenic | 45.0% | |
| ! | TGCCTTGCATGGCAACATTT+TGG | + | chr5_1:39093374-39093393 | Msa0730270:intron | 45.0% |
| AAACCGGCATGGAACTTCTA+AGG | + | chr5_1:39093509-39093528 | Msa0730270:CDS | 45.0% | |
| AACCGGCATGGAACTTCTAA+GGG | + | chr5_1:39093510-39093529 | Msa0730270:CDS | 45.0% | |
| ! | GGTTACCACTGCATTTTGGA+AGG | + | chr5_1:39093788-39093807 | Msa0730270:CDS | 45.0% |
| CTCAGAACACGCCTAATCCT+AGG | - | chr5_1:39090254-39090273 | None:intergenic | 50.0% | |
| CTAGGATTAGGCGTGTTCTG+AGG | + | chr5_1:39090252-39090271 | Msa0730270:intron | 50.0% | |
| !! | TATCAGCGTTGACGTGTCTG+AGG | + | chr5_1:39090350-39090369 | Msa0730270:intron | 50.0% |
| TCTTCTGCTCTGATTCCAGC+AGG | - | chr5_1:39090499-39090518 | None:intergenic | 50.0% | |
| CGAGGAGAATTGCTGCATCT+GGG | + | chr5_1:39091043-39091062 | Msa0730270:CDS | 50.0% | |
| TGTTGGGACAGTCAATGGGT+GGG | + | chr5_1:39091443-39091462 | Msa0730270:CDS | 50.0% | |
| CAGTAGCTCCCTAGGTTACA+AGG | - | chr5_1:39091878-39091897 | None:intergenic | 50.0% | |
| GCCTTCATTACTGCATCAGG+TGG | - | chr5_1:39092391-39092410 | None:intergenic | 50.0% | |
| ! | CTCTGAAAGCCAGTTCAGCA+AGG | - | chr5_1:39092468-39092487 | None:intergenic | 50.0% |
| !!! | TCCATGCCGGTTTTAAGTCG+CGG | - | chr5_1:39093502-39093521 | None:intergenic | 50.0% |
| CACCCTTAGAAGTTCCATGC+CGG | - | chr5_1:39093515-39093534 | None:intergenic | 50.0% | |
| TCTTCATGGAGCAGCAGACA+AGG | + | chr5_1:39093688-39093707 | Msa0730270:CDS | 50.0% | |
| ! | TTTTCCCAGGATGCTCCTGC+TGG | + | chr5_1:39090481-39090500 | Msa0730270:intron | 55.0% |
| !! | GATTCCAGCAGGAGCATCCT+GGG | - | chr5_1:39090488-39090507 | None:intergenic | 55.0% |
| !! | TGATTCCAGCAGGAGCATCC+TGG | - | chr5_1:39090489-39090508 | None:intergenic | 55.0% |
| AAGAGCTGGATGCCAGAGTC+AGG | + | chr5_1:39090701-39090720 | Msa0730270:CDS | 55.0% | |
| GCGAGGAGAATTGCTGCATC+TGG | + | chr5_1:39091042-39091061 | Msa0730270:CDS | 55.0% | |
| ! | GCACCGACACCTCCGATTAT+AGG | - | chr5_1:39091333-39091352 | None:intergenic | 55.0% |
| !! | ATAATCGGAGGTGTCGGTGC+TGG | + | chr5_1:39091333-39091352 | Msa0730270:intron | 55.0% |
| GACTGTCCCAACAGAACTCG+AGG | - | chr5_1:39091436-39091455 | None:intergenic | 55.0% | |
| CTGTTGGGACAGTCAATGGG+TGG | + | chr5_1:39091442-39091461 | Msa0730270:CDS | 55.0% | |
| GTTGGGACAGTCAATGGGTG+GGG | + | chr5_1:39091444-39091463 | Msa0730270:CDS | 55.0% | |
| TCCGCGACTTAAAACCGGCA+TGG | + | chr5_1:39093498-39093517 | Msa0730270:CDS | 55.0% | |
| GCTCCCCTTCCAAAATGCAG+TGG | - | chr5_1:39093796-39093815 | None:intergenic | 55.0% | |
| !! | CGGAGGTGTCGGTGCTGGAT+AGG | + | chr5_1:39091338-39091357 | Msa0730270:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 39089612 | 39094085 | 39089612 | ID=Msa0730270;Name=Msa0730270 |
| chr5_1 | mRNA | 39089612 | 39094085 | 39089612 | ID=Msa0730270-mRNA-1;Parent=Msa0730270;Name=Msa0730270-mRNA-1;_AED=0.17;_eAED=0.17;_QI=200|0.66|0.8|1|0.88|0.8|10|199|433 |
| chr5_1 | exon | 39089612 | 39089681 | 39089612 | ID=Msa0730270-mRNA-1:exon:11621;Parent=Msa0730270-mRNA-1 |
| chr5_1 | exon | 39089702 | 39090125 | 39089702 | ID=Msa0730270-mRNA-1:exon:11622;Parent=Msa0730270-mRNA-1 |
| chr5_1 | exon | 39090490 | 39090534 | 39090490 | ID=Msa0730270-mRNA-1:exon:11623;Parent=Msa0730270-mRNA-1 |
| chr5_1 | exon | 39090662 | 39090791 | 39090662 | ID=Msa0730270-mRNA-1:exon:11624;Parent=Msa0730270-mRNA-1 |
| chr5_1 | exon | 39091037 | 39091183 | 39091037 | ID=Msa0730270-mRNA-1:exon:11625;Parent=Msa0730270-mRNA-1 |
| chr5_1 | exon | 39091410 | 39091540 | 39091410 | ID=Msa0730270-mRNA-1:exon:11626;Parent=Msa0730270-mRNA-1 |
| chr5_1 | exon | 39091981 | 39092079 | 39091981 | ID=Msa0730270-mRNA-1:exon:11627;Parent=Msa0730270-mRNA-1 |
| chr5_1 | exon | 39092370 | 39092507 | 39092370 | ID=Msa0730270-mRNA-1:exon:11628;Parent=Msa0730270-mRNA-1 |
| chr5_1 | exon | 39093466 | 39093564 | 39093466 | ID=Msa0730270-mRNA-1:exon:11629;Parent=Msa0730270-mRNA-1 |
| chr5_1 | exon | 39093668 | 39094085 | 39093668 | ID=Msa0730270-mRNA-1:exon:11630;Parent=Msa0730270-mRNA-1 |
| chr5_1 | five_prime_UTR | 39089612 | 39089681 | 39089612 | ID=Msa0730270-mRNA-1:five_prime_utr;Parent=Msa0730270-mRNA-1 |
| chr5_1 | five_prime_UTR | 39089702 | 39089831 | 39089702 | ID=Msa0730270-mRNA-1:five_prime_utr;Parent=Msa0730270-mRNA-1 |
| chr5_1 | CDS | 39089832 | 39090125 | 39089832 | ID=Msa0730270-mRNA-1:cds;Parent=Msa0730270-mRNA-1 |
| chr5_1 | CDS | 39090490 | 39090534 | 39090490 | ID=Msa0730270-mRNA-1:cds;Parent=Msa0730270-mRNA-1 |
| chr5_1 | CDS | 39090662 | 39090791 | 39090662 | ID=Msa0730270-mRNA-1:cds;Parent=Msa0730270-mRNA-1 |
| chr5_1 | CDS | 39091037 | 39091183 | 39091037 | ID=Msa0730270-mRNA-1:cds;Parent=Msa0730270-mRNA-1 |
| chr5_1 | CDS | 39091410 | 39091540 | 39091410 | ID=Msa0730270-mRNA-1:cds;Parent=Msa0730270-mRNA-1 |
| chr5_1 | CDS | 39091981 | 39092079 | 39091981 | ID=Msa0730270-mRNA-1:cds;Parent=Msa0730270-mRNA-1 |
| chr5_1 | CDS | 39092370 | 39092507 | 39092370 | ID=Msa0730270-mRNA-1:cds;Parent=Msa0730270-mRNA-1 |
| chr5_1 | CDS | 39093466 | 39093564 | 39093466 | ID=Msa0730270-mRNA-1:cds;Parent=Msa0730270-mRNA-1 |
| chr5_1 | CDS | 39093668 | 39093886 | 39093668 | ID=Msa0730270-mRNA-1:cds;Parent=Msa0730270-mRNA-1 |
| chr5_1 | three_prime_UTR | 39093887 | 39094085 | 39093887 | ID=Msa0730270-mRNA-1:three_prime_utr;Parent=Msa0730270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
