AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0808780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808780 MtrunA17_Chr3g0125181 93.780 820 51 0 1 820 1 820 0.0 1534
Msa0808780 MtrunA17_Chr8g0381281 25.000 208 101 3 534 735 211 369 1.06e-15 80.5
Msa0808780 MtrunA17_Chr1g0162961 29.046 241 141 12 517 734 60 293 6.63e-14 74.7
Msa0808780 MtrunA17_Chr4g0059031 26.054 261 167 9 531 771 398 652 2.76e-11 67.4
Msa0808780 MtrunA17_Chr4g0059031 28.022 182 106 7 531 696 56 228 4.09e-11 67.0
Msa0808780 MtrunA17_Chr4g0020751 23.810 336 197 9 528 817 57 379 6.57e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0808780 AT1G21650.3 44.005 834 419 17 1 815 1 805 0.0 647
Msa0808780 AT1G21651.1 43.967 837 419 17 1 817 1 807 0.0 645
Msa0808780 AT1G24530.1 23.554 242 125 4 506 736 161 353 5.94e-16 81.6
Msa0808780 AT4G02730.1 24.127 315 197 10 527 818 35 330 9.27e-15 77.0
Msa0808780 AT1G49450.1 26.259 278 164 10 536 777 135 407 1.60e-14 77.4
Msa0808780 AT5G49200.1 23.746 299 179 8 524 776 120 415 1.19e-13 74.3
Msa0808780 AT5G16750.1 25.385 260 170 9 531 771 397 651 1.87e-13 75.1
Msa0808780 AT1G47610.1 22.881 354 211 11 516 818 5 347 5.63e-13 71.6
Msa0808780 AT5G50120.1 26.688 311 178 15 454 735 94 383 1.11e-12 71.2
Msa0808780 AT3G18950.1 25.076 331 194 12 536 818 139 463 1.53e-12 71.2
Msa0808780 AT2G26490.1 23.926 326 198 12 536 817 97 416 5.93e-12 69.3
Msa0808780 AT1G24130.1 20.736 299 153 10 454 735 123 354 3.26e-11 66.6
Msa0808780 AT1G49040.1 23.077 247 173 6 531 771 895 1130 3.75e-11 67.8

Find 246 sgRNAs with CRISPR-Local

Find 648 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAGGTTGTGTAGGGTTTA+TGG 0.185675 5_3:-33845534 Msa0808780:CDS
ATCCATTCCTTGACTGCTTT+TGG 0.186386 5_3:-33841208 Msa0808780:CDS
CACCCTGTAGAGGCATAATT+TGG 0.200463 5_3:+33837654 None:intergenic
TTTCGGCTAGTTATATTTCT+TGG 0.223347 5_3:-33844951 Msa0808780:CDS
GGTTTGGTTGCTGGATGTTT+GGG 0.259544 5_3:-33845327 Msa0808780:CDS
AGGTTTGGTTGCTGGATGTT+TGG 0.261871 5_3:-33845328 Msa0808780:CDS
AGCAGTGATTGCTTTGAATT+TGG 0.265522 5_3:-33845352 Msa0808780:CDS
TGCTTTGAATTTGGAAGGTT+TGG 0.270758 5_3:-33845343 Msa0808780:CDS
CTATGAGTCTGCAGGGAAAA+TGG 0.273135 5_3:-33840309 Msa0808780:CDS
TACTGCCAGTAGGGATTTGC+TGG 0.273597 5_3:-33840561 Msa0808780:CDS
GGAAAACTTTATATTGGATA+TGG 0.275046 5_3:-33839156 Msa0808780:CDS
TCTCATTTACACACATTTAG+AGG 0.288418 5_3:-33841394 Msa0808780:CDS
GGCACCATTATGCAATGTTT+TGG 0.291144 5_3:+33840339 None:intergenic
TGTTGGTGGTAGTCTGTATT+TGG 0.292580 5_3:-33845496 Msa0808780:CDS
GTAGGTTGTGTAGGGTTTAT+GGG 0.309934 5_3:-33845533 Msa0808780:CDS
AACACAACATGGTCTAATAT+TGG 0.314258 5_3:-33846208 Msa0808780:five_prime_UTR
ATTGAATTGTAGGAATTATC+AGG 0.322957 5_3:-33839258 Msa0808780:intron
ATGCTTATTCCTCTAAATTC+TGG 0.327929 5_3:-33845836 Msa0808780:CDS
TGGATTGGATTATCTACATC+TGG 0.331507 5_3:+33837674 None:intergenic
GTGTTGCTGCGGGTTCTTAT+TGG 0.336950 5_3:-33845027 Msa0808780:CDS
AATTTGGAAGGTTTGGTTGC+TGG 0.338083 5_3:-33845336 Msa0808780:CDS
AGCCAAGGAAAACTTTATAT+TGG 0.340396 5_3:-33839162 Msa0808780:CDS
TCTAAAGGTAGGGTTTGTTT+TGG 0.348131 5_3:-33845720 Msa0808780:CDS
GTCAAGATCCCTTGAGGAAA+TGG 0.354823 5_3:-33841261 Msa0808780:CDS
AGGGATTGGTCTTGATGTTT+CGG 0.356607 5_3:-33844968 Msa0808780:CDS
TCCACACTCTGAAGAATATC+AGG 0.359236 5_3:+33844625 None:intergenic
GCAGACTCTTTGCCAGTGTC+TGG 0.361749 5_3:-33844869 Msa0808780:CDS
ATCAATGTGTACGGAATGTT+TGG 0.362479 5_3:-33845181 Msa0808780:CDS
TTCTGGCATGGAGGAGTTAC+CGG 0.366807 5_3:-33846138 Msa0808780:exon
ATTCGGAGCTTACGGTAAAT+AGG 0.369181 5_3:-33844756 Msa0808780:CDS
GGATGTAAGGAAATCCATTC+AGG 0.371810 5_3:-33844815 Msa0808780:CDS
GAACTGACCGTCAACGCATT+TGG 0.372554 5_3:-33839225 Msa0808780:CDS
GTGCTAGGGGAAGATCTTCC+TGG 0.379218 5_3:-33840608 Msa0808780:CDS
TGTCCGTGTATGGTCCTTGC+AGG 0.380459 5_3:-33842326 Msa0808780:intron
GCCGAGAGAACACGAATTGC+AGG 0.382095 5_3:-33844668 Msa0808780:CDS
TGTGTAGGGTTTATGGGTTG+TGG 0.384472 5_3:-33845527 Msa0808780:CDS
GCGGGGCAACGAATTGTGTT+TGG 0.385640 5_3:+33846005 None:intergenic
GTGGCGGAGGCATATTTGTC+TGG 0.388048 5_3:-33841303 Msa0808780:CDS
TTCGGCTAGTTATATTTCTT+GGG 0.389745 5_3:-33844950 Msa0808780:CDS
ATATGGTGACAAGTCTATTA+AGG 0.392939 5_3:-33839139 Msa0808780:intron
GCCTGCAATTCGTGTTCTCT+CGG 0.394402 5_3:+33844667 None:intergenic
TGCTTGGGTTATCAAGTGTT+TGG 0.394980 5_3:-33845619 Msa0808780:CDS
ATGCTCGGCTTCCAGAGTTC+TGG 0.395107 5_3:-33837715 Msa0808780:three_prime_UTR
TTGGGTTTGGCTCGGATGTA+TGG 0.396764 5_3:-33845062 Msa0808780:CDS
TCGAGATATCCAATTGGGTT+TGG 0.397930 5_3:-33845075 Msa0808780:CDS
CTCATCAGACCAGAATTTAG+AGG 0.409193 5_3:+33845827 None:intergenic
TAAGTTTAGTTATGTTGCTT+GGG 0.409974 5_3:-33845634 Msa0808780:CDS
GAGGCAATGTGGTAGGGTAT+TGG 0.412523 5_3:-33845466 Msa0808780:CDS
AACATGGTGGATTGATGAAC+GGG 0.412793 5_3:-33845440 Msa0808780:CDS
TTAAACTTCGAATCGGTAAC+CGG 0.413735 5_3:+33845654 None:intergenic
GAAACTGTAAACAGCTGTTC+TGG 0.416084 5_3:-33846155 Msa0808780:five_prime_UTR
AAAGAGTCTGCTTAAGTGAT+AGG 0.421049 5_3:+33844881 None:intergenic
CTCGAGCAACTGACACAACT+TGG 0.421434 5_3:+33844705 None:intergenic
TTGATAAAACTGTCCGTGTA+TGG 0.421746 5_3:-33842336 Msa0808780:CDS
TTAAGTTTAGTTATGTTGCT+TGG 0.425056 5_3:-33845635 Msa0808780:CDS
AATCCAAATTATGCCTCTAC+AGG 0.428267 5_3:-33837657 Msa0808780:three_prime_UTR
GGGTTGTGGAGTGAGGTTGT+TGG 0.429200 5_3:-33845513 Msa0808780:CDS
GAGAGAAGAAGGGCCTTGAT+TGG 0.431693 5_3:+33845956 None:intergenic
TTGAATGAGGTTGTGAGGGA+AGG 0.432983 5_3:-33845591 Msa0808780:CDS
TTTACGCTGCTTGGAAGGAT+TGG 0.433206 5_3:-33845803 Msa0808780:CDS
TCCGATCATTACTTTGTCTC+CGG 0.434979 5_3:-33845673 Msa0808780:CDS
TTTGGGTGATTCGGAGCTTA+CGG 0.438196 5_3:-33844764 Msa0808780:CDS
CATAGCTGTCACAACAGAAC+TGG 0.438524 5_3:+33839191 None:intergenic
GGCCATCTTGGTTGTATCAC+TGG 0.438571 5_3:-33844535 Msa0808780:CDS
AGGTTCTTTACAGTGGTAGT+TGG 0.439248 5_3:-33840679 Msa0808780:CDS
GGGAAGGAAGCTTATGGATC+AGG 0.443648 5_3:-33845238 Msa0808780:CDS
AAGAAGGATTGGCGCTTTAG+TGG 0.447402 5_3:-33841232 Msa0808780:CDS
TGGAGAGACGAAGTCTATCC+TGG 0.452252 5_3:-33840588 Msa0808780:CDS
GTTTGAAATTGGATAAAGAT+GGG 0.452335 5_3:-33845413 Msa0808780:CDS
GGTTTATGGGTTGTGGAGTG+AGG 0.452663 5_3:-33845520 Msa0808780:CDS
CTCAAGGGATCTTGACTAAG+AGG 0.453735 5_3:+33841268 None:intergenic
ATATGAGAATGGTTGCATAA+AGG 0.454174 5_3:-33840531 Msa0808780:intron
AGGATAGACTTCGTCTCTCC+AGG 0.454828 5_3:+33840590 None:intergenic
GAGGTTGTGAGGGAAGGGTT+AGG 0.454933 5_3:-33845585 Msa0808780:CDS
AAAGATCTGCAAGGCCATCT+TGG 0.455347 5_3:-33844547 Msa0808780:CDS
TGGGTTATCAAGTGTTTGGA+GGG 0.455368 5_3:-33845615 Msa0808780:CDS
TGTAGAGGCATAATTTGGAT+TGG 0.457218 5_3:+33837659 None:intergenic
ACACAACTTGGCAAGAATTA+CGG 0.457396 5_3:+33844717 None:intergenic
GGTTCTTTACAGTGGTAGTT+GGG 0.460743 5_3:-33840678 Msa0808780:CDS
TATCTCGAATCCCCGCTCTC+TGG 0.461547 5_3:+33845090 None:intergenic
GGGTTTGTATATAACTTGAC+AGG 0.463388 5_3:-33837580 Msa0808780:three_prime_UTR
GTTGGCTTGTGTGTTGCTGC+GGG 0.465340 5_3:-33845037 Msa0808780:CDS
AAGAGTGTTGTGGTTGTTGA+AGG 0.465537 5_3:+33845904 None:intergenic
GTTCAGATGTTGTGGATGTA+AGG 0.466066 5_3:-33844828 Msa0808780:CDS
AGTTCCAAAACATTGCATAA+TGG 0.466755 5_3:-33840343 Msa0808780:CDS
TGAATGAGGTTGTGAGGGAA+GGG 0.467852 5_3:-33845590 Msa0808780:CDS
GTTGCTCGAGGAAAGTTCTA+AGG 0.468259 5_3:-33844692 Msa0808780:CDS
TTTGACTAACAAATCCTGAA+TGG 0.470928 5_3:+33844801 None:intergenic
TGAGGCAGAGTAGGTTGTGT+AGG 0.471499 5_3:-33845542 Msa0808780:CDS
GTTAAATACTCTCCCAATCA+AGG 0.476233 5_3:-33845969 Msa0808780:CDS
GGTGATGGGAAGGAAGCTTA+TGG 0.476436 5_3:-33845244 Msa0808780:CDS
AATCAAAGCTTGGTCATTGA+AGG 0.476514 5_3:-33841152 Msa0808780:intron
TTGGGTTATCAAGTGTTTGG+AGG 0.476582 5_3:-33845616 Msa0808780:CDS
GGGATTCGAGATATCCAATT+GGG 0.478487 5_3:-33845080 Msa0808780:CDS
GGTTTGAAATTGGATAAAGA+TGG 0.478959 5_3:-33845414 Msa0808780:CDS
TGCTGTATATATATGATGCT+CGG 0.479308 5_3:-33837730 Msa0808780:three_prime_UTR
ACTAAACTTAAACTTCGAAT+CGG 0.479824 5_3:+33845647 None:intergenic
ACATCCGAGCCAAACCCAAT+TGG 0.479934 5_3:+33845066 None:intergenic
TTGTGGAGTGAGGTTGTTGG+TGG 0.480798 5_3:-33845510 Msa0808780:CDS
AGCATATTCACCGTTGATTG+AGG 0.483586 5_3:+33845854 None:intergenic
CTGTTGATGACAGTTGTTGC+TGG 0.484018 5_3:+33837801 None:intergenic
CAGGGAAAATGGCTTTATAC+AGG 0.484074 5_3:-33840298 Msa0808780:CDS
TTAATTCGAGTTCTAAAGGT+AGG 0.485679 5_3:-33845731 Msa0808780:CDS
ATGGCTTTATACAGGAGGTT+GGG 0.489479 5_3:-33840290 Msa0808780:CDS
AGAGAAGAAGGGCCTTGATT+GGG 0.489930 5_3:+33845957 None:intergenic
AGGTTTAATTCGAGTTCTAA+AGG 0.490463 5_3:-33845735 Msa0808780:CDS
CATAGCCCGTTGGTGGTGCT+AGG 0.491856 5_3:-33840623 Msa0808780:CDS
TTCTCATACCATTTCCTCAA+GGG 0.493596 5_3:+33841253 None:intergenic
GAGGAAATGGTATGAGAAGA+AGG 0.496326 5_3:-33841248 Msa0808780:CDS
CTTTACAGTGGTAGTTGGGA+TGG 0.497299 5_3:-33840674 Msa0808780:CDS
CTGGTTGCAGCATATGAGAA+TGG 0.500700 5_3:-33840542 Msa0808780:CDS
TATTGATTTGAATGAGGTGT+TGG 0.500765 5_3:-33845265 Msa0808780:CDS
GTGATTGCTTTGAATTTGGA+AGG 0.501498 5_3:-33845348 Msa0808780:CDS
AATCTTCTCTACACTGGAAG+TGG 0.502004 5_3:-33841184 Msa0808780:CDS
CCTGGCTATTACTGCCAGTA+GGG 0.502384 5_3:-33840570 Msa0808780:CDS
GTACACATTGATTCGTGTGA+TGG 0.504322 5_3:+33845192 None:intergenic
TTGTGAATCAACCAGAACTC+TGG 0.505544 5_3:+33837704 None:intergenic
AATGGATCCAAATGCGTTGA+CGG 0.506874 5_3:+33839218 None:intergenic
CCCTACTGGCAGTAATAGCC+AGG 0.507582 5_3:+33840570 None:intergenic
GGTTTGTATTGATTTGAATG+AGG 0.508437 5_3:-33845271 Msa0808780:CDS
TGGCTCGGATGTATGGTCGT+TGG 0.509247 5_3:-33845055 Msa0808780:CDS
GGATTGGATTATCTACATCT+GGG 0.511407 5_3:+33837675 None:intergenic
AAGCTTCTGTGAGGCAGAGT+AGG 0.512120 5_3:-33845551 Msa0808780:CDS
AATGGCTTTATACAGGAGGT+TGG 0.513077 5_3:-33840291 Msa0808780:CDS
GAGGCAGAGTAGGTTGTGTA+GGG 0.517876 5_3:-33845541 Msa0808780:CDS
CTTCCCCTAGCACCACCAAC+GGG 0.517966 5_3:+33840618 None:intergenic
GGATCAGGTTTCTTGTGGCA+CGG 0.518549 5_3:-33845223 Msa0808780:CDS
TTCCAAAAGCAGTCAAGGAA+TGG 0.519183 5_3:+33841206 None:intergenic
TGCAACCAGCAAATCCCTAC+TGG 0.519400 5_3:+33840556 None:intergenic
AATATTAGACCATGTTGTGT+TGG 0.519959 5_3:+33846210 None:intergenic
GATCAGGTTTCTTGTGGCAC+GGG 0.520966 5_3:-33845222 Msa0808780:CDS
AAGATTTCCAAAAGCAGTCA+AGG 0.523625 5_3:+33841201 None:intergenic
CCAGTGTCTGGACATCAATC+CGG 0.524842 5_3:-33844857 Msa0808780:CDS
GTGTTTGGAGGGGTTGAATG+AGG 0.527146 5_3:-33845604 Msa0808780:CDS
GGGGATTCGAGATATCCAAT+TGG 0.529169 5_3:-33845081 Msa0808780:CDS
TTGAATGAGGTGTTGGTGAT+GGG 0.530062 5_3:-33845258 Msa0808780:CDS
GTGTGGAAACTACAGATTTG+TGG 0.530478 5_3:+33840717 None:intergenic
CGTTGGCTTGTGTGTTGCTG+CGG 0.532206 5_3:-33845038 Msa0808780:CDS
TGGCGGAGGCATATTTGTCT+GGG 0.533013 5_3:-33841302 Msa0808780:CDS
TTTGGAAATCTTCTCTACAC+TGG 0.533385 5_3:-33841190 Msa0808780:CDS
GGCTAGTTATATTTCTTGGG+TGG 0.533784 5_3:-33844947 Msa0808780:CDS
AATCCCTTCACTCATTTCAA+AGG 0.535310 5_3:+33844984 None:intergenic
GGGTTGTTAATCCAGAGAGC+GGG 0.535616 5_3:-33845101 Msa0808780:CDS
CCGGATTGATGTCCAGACAC+TGG 0.535941 5_3:+33844857 None:intergenic
CTTATGGATCAGGTTTCTTG+TGG 0.536122 5_3:-33845228 Msa0808780:CDS
ATAGCCCGTTGGTGGTGCTA+GGG 0.537282 5_3:-33840622 Msa0808780:CDS
GAGATAGAACAATCAAAGCT+TGG 0.538440 5_3:-33841162 Msa0808780:CDS
TCCGTTACTGAGGACGGTGT+TGG 0.539166 5_3:-33845759 Msa0808780:CDS
TTTGAATGAGGTGTTGGTGA+TGG 0.540538 5_3:-33845259 Msa0808780:CDS
TTATTGGAAACAAACTCCCT+CGG 0.544021 5_3:-33845011 Msa0808780:CDS
CACAACAGAACTGGAAGGAA+TGG 0.544135 5_3:+33839200 None:intergenic
AACATGGTCTAATATTGGAA+TGG 0.545350 5_3:-33846203 Msa0808780:five_prime_UTR
TAATGATCATAGCCCGTTGG+TGG 0.549458 5_3:-33840630 Msa0808780:CDS
GGGATGGAACCGTTCGATTG+TGG 0.551322 5_3:-33840658 Msa0808780:CDS
ATTACCTTTGAAATGAGTGA+AGG 0.551791 5_3:-33844988 Msa0808780:CDS
GAATTGCAGGCAAAAGAAGA+TGG 0.552427 5_3:-33844655 Msa0808780:CDS
TAATTCGAGTTCTAAAGGTA+GGG 0.553340 5_3:-33845730 Msa0808780:CDS
TTTAACGAGTTGAGTACAAG+CGG 0.554358 5_3:+33845986 None:intergenic
GGAAAATCGTTCAGATGTTG+TGG 0.559321 5_3:-33844836 Msa0808780:CDS
TCTTCCCCTAGCACCACCAA+CGG 0.560717 5_3:+33840617 None:intergenic
TGTAAACAGCTGTTCTGGCA+TGG 0.560750 5_3:-33846150 Msa0808780:exon
ATATCCAATTGGGTTTGGCT+CGG 0.563450 5_3:-33845070 Msa0808780:CDS
CTCATCACATACTGAAAGTG+TGG 0.564117 5_3:+33840700 None:intergenic
TTCACTGCTAGCTTATCTAA+AGG 0.564158 5_3:-33844583 Msa0808780:CDS
ACCGTCCTCAGTAACGGAAA+CGG 0.564364 5_3:+33845764 None:intergenic
GAAGAACAATTGTGTATAAG+TGG 0.564435 5_3:-33841331 Msa0808780:CDS
ATAAGTGGTGACAGTGGCGG+AGG 0.564813 5_3:-33841316 Msa0808780:CDS
CTCATTTCAAAGGTAATCCG+AGG 0.565802 5_3:+33844994 None:intergenic
GCATGAGAGTACTCGTGGAA+TGG 0.566164 5_3:+33846076 None:intergenic
CTTCTCATACCATTTCCTCA+AGG 0.569129 5_3:+33841252 None:intergenic
ACCGTTTCCGTTACTGAGGA+CGG 0.569688 5_3:-33845765 Msa0808780:CDS
AGAGTGTTGTGGTTGTTGAA+GGG 0.570090 5_3:+33845905 None:intergenic
TTTGAAATGAGTGAAGGGAT+TGG 0.571973 5_3:-33844982 Msa0808780:CDS
ATTTAGAAGTGTTACCTGCA+AGG 0.577116 5_3:+33842312 None:intergenic
GTGTGAGAGGCAATGTGGTA+GGG 0.577329 5_3:-33845472 Msa0808780:CDS
TTACCTTTGAAATGAGTGAA+GGG 0.578480 5_3:-33844987 Msa0808780:CDS
TGTGTGAGAGGCAATGTGGT+AGG 0.580383 5_3:-33845473 Msa0808780:CDS
AATGGTATGAGAAGAAGGAT+TGG 0.581367 5_3:-33841243 Msa0808780:CDS
ATCACACGAATCAATGTGTA+CGG 0.581620 5_3:-33845190 Msa0808780:CDS
TGTATCACTGGATTAGCTGT+AGG 0.584576 5_3:-33844523 Msa0808780:CDS
ACCAACACCGTCCTCAGTAA+CGG 0.586298 5_3:+33845758 None:intergenic
GTAACGGAAACGGTGTCGTG+TGG 0.588599 5_3:+33845774 None:intergenic
GTCTGTATTTGGTGTGTGAG+AGG 0.588608 5_3:-33845485 Msa0808780:CDS
CACACTTTCAGTATGTGATG+AGG 0.590444 5_3:-33840699 Msa0808780:CDS
GGGGTTGAATGAGGTTGTGA+GGG 0.592486 5_3:-33845595 Msa0808780:CDS
TTACTGAGGACGGTGTTGGT+AGG 0.594029 5_3:-33845755 Msa0808780:CDS
ACAGCTATGTTATGCAGCCA+AGG 0.594851 5_3:-33839177 Msa0808780:CDS
ACCTGATATTCTTCAGAGTG+TGG 0.595935 5_3:-33844626 Msa0808780:CDS
TTAACGAGTTGAGTACAAGC+GGG 0.597571 5_3:+33845987 None:intergenic
ACCGGAGACAAAGTAATGAT+CGG 0.598232 5_3:+33845672 None:intergenic
GGGTTATCAAGTGTTTGGAG+GGG 0.599842 5_3:-33845614 Msa0808780:CDS
ATCCAGTGATACAACCAAGA+TGG 0.600852 5_3:+33844533 None:intergenic
TCAAAATTGTCGTTTAGTCG+AGG 0.602159 5_3:-33846233 Msa0808780:five_prime_UTR
AGGGGTTGAATGAGGTTGTG+AGG 0.608706 5_3:-33845596 Msa0808780:CDS
CGAATTGTGTTTGGAAAACG+CGG 0.608980 5_3:+33846014 None:intergenic
GCGGAGGCATATTTGTCTGG+GGG 0.609138 5_3:-33841300 Msa0808780:CDS
GATTGGATTATCTACATCTG+GGG 0.610520 5_3:+33837676 None:intergenic
GGCGGAGGCATATTTGTCTG+GGG 0.611922 5_3:-33841301 Msa0808780:CDS
TAGCCCGTTGGTGGTGCTAG+GGG 0.612914 5_3:-33840621 Msa0808780:CDS
CAAGTTGTGTCAGTTGCTCG+AGG 0.613023 5_3:-33844704 Msa0808780:CDS
ACTTTGATGTGCACAATGGA+TGG 0.613868 5_3:-33840740 Msa0808780:CDS
TGGCCGCATGAGAGTACTCG+TGG 0.615484 5_3:+33846071 None:intergenic
ATCACTGGATTAGCTGTAGG+AGG 0.617065 5_3:-33844520 Msa0808780:intron
TGAAGACACACTGGGCACTC+CGG 0.618973 5_3:+33846119 None:intergenic
TGTGATGAAGAAGAGTGTTG+TGG 0.621067 5_3:+33845894 None:intergenic
ATGAGGTGTTGGTGATGGGA+AGG 0.622981 5_3:-33845254 Msa0808780:CDS
GATGATAACCTGGCAAGACA+AGG 0.623890 5_3:+33837507 None:intergenic
AAACATGGTGGATTGATGAA+CGG 0.625588 5_3:-33845441 Msa0808780:CDS
TAGTCGAGGCCAACACAACA+TGG 0.626018 5_3:-33846219 Msa0808780:five_prime_UTR
AATCAACGGTCCTCAATCAA+CGG 0.628301 5_3:-33845864 Msa0808780:CDS
GACAAGCTTCGCAAATAGTG+TGG 0.628367 5_3:+33846051 None:intergenic
GGAAAATGGCTTTATACAGG+AGG 0.630205 5_3:-33840295 Msa0808780:CDS
TCCTGGCTATTACTGCCAGT+AGG 0.632029 5_3:-33840571 Msa0808780:CDS
ATGTACAGAACACCCTGTAG+AGG 0.633211 5_3:+33837644 None:intergenic
CTCTTAGTCAAGATCCCTTG+AGG 0.633330 5_3:-33841267 Msa0808780:CDS
ATTGGATTATCTACATCTGG+GGG 0.634316 5_3:+33837677 None:intergenic
AGGTCATGAGAATAAAGTCA+TGG 0.635591 5_3:-33841374 Msa0808780:CDS
TGTGATGAGGTTCTTTACAG+TGG 0.644038 5_3:-33840686 Msa0808780:CDS
ATCCAAATTATGCCTCTACA+GGG 0.644079 5_3:-33837656 Msa0808780:three_prime_UTR
AGGGTATTGGAGAAACATGG+TGG 0.645952 5_3:-33845453 Msa0808780:CDS
GGTAGGGTATTGGAGAAACA+TGG 0.648011 5_3:-33845456 Msa0808780:CDS
AAAACTTAGACAAAACCTCA+GGG 0.648737 5_3:+33845133 None:intergenic
GGTTGTTAATCCAGAGAGCG+GGG 0.649343 5_3:-33845100 Msa0808780:CDS
TTACCTGCAAGGACCATACA+CGG 0.655657 5_3:+33842323 None:intergenic
TTGGTGTGTGAGAGGCAATG+TGG 0.657631 5_3:-33845477 Msa0808780:CDS
TCTTAATGATCATAGCCCGT+TGG 0.661187 5_3:-33840633 Msa0808780:CDS
AGGGTTGTTAATCCAGAGAG+CGG 0.668851 5_3:-33845102 Msa0808780:CDS
ATTAAGACTCCACAATCGAA+CGG 0.668888 5_3:+33840649 None:intergenic
TAACGAGTTGAGTACAAGCG+GGG 0.674056 5_3:+33845988 None:intergenic
TCATTTCAAAGGTAATCCGA+GGG 0.677675 5_3:+33844995 None:intergenic
GCTGTCACAACAGAACTGGA+AGG 0.680632 5_3:+33839195 None:intergenic
ATTGAGCTTAAAGATCTGCA+AGG 0.682677 5_3:-33844556 Msa0808780:CDS
TGGAACTTTGATGTGCACAA+TGG 0.684155 5_3:-33840744 Msa0808780:CDS
AAACAGCTGTTCTGGCATGG+AGG 0.684209 5_3:-33846147 Msa0808780:exon
TTGCAGGCAAAAGAAGATGG+TGG 0.685113 5_3:-33844652 Msa0808780:CDS
CGACACCGTTTCCGTTACTG+AGG 0.695351 5_3:-33845769 Msa0808780:CDS
TCGGAGTTAAACTCACCGTA+CGG 0.695373 5_3:+33845691 None:intergenic
TGTATAAGTGGTGACAGTGG+CGG 0.716166 5_3:-33841319 Msa0808780:CDS
ATTGTGTTTGGAAAACGCGG+TGG 0.719436 5_3:+33846017 None:intergenic
ACGGTAAATAGGAACAACAC+AGG 0.719876 5_3:-33844745 Msa0808780:CDS
TGATTCTAGAAGCTTCTGTG+AGG 0.720899 5_3:-33845560 Msa0808780:CDS
ATTCCACGAGTACTCTCATG+CGG 0.727907 5_3:-33846074 Msa0808780:CDS
TTGTGTATAAGTGGTGACAG+TGG 0.731739 5_3:-33841322 Msa0808780:CDS
ACATGGTGGATTGATGAACG+GGG 0.733902 5_3:-33845439 Msa0808780:CDS
CATGGTGGATTGATGAACGG+GGG 0.743106 5_3:-33845438 Msa0808780:CDS
TTGGATTATCTACATCTGGG+GGG 0.765124 5_3:+33837678 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTGATAATTTTTATAA+TGG - chr5_3:33840650-33840669 Msa0808780:CDS 10.0%
!!! TCCATTTTATTTTAATAAAT+AGG - chr5_3:33841830-33841849 Msa0808780:intron 10.0%
!! TCCTATTTATTAAAATAAAA+TGG + chr5_3:33841834-33841853 None:intergenic 10.0%
!!! TCTTAATTTTTAAAAGAAAA+AGG + chr5_3:33842000-33842019 None:intergenic 10.0%
!! TAAGATCAAAATATATTATT+TGG + chr5_3:33843845-33843864 None:intergenic 10.0%
!! TTATATATTAAAAGCTTAAT+AGG - chr5_3:33845124-33845143 Msa0808780:CDS 10.0%
!!! TTTTTTTTTTAACTACAAAG+AGG - chr5_3:33839533-33839552 Msa0808780:intron 15.0%
!!! TTTTTTTTTAACTACAAAGA+GGG - chr5_3:33839534-33839553 Msa0808780:intron 15.0%
!! TAAGTCAAATATTAAGTAAA+GGG + chr5_3:33840105-33840124 None:intergenic 15.0%
!! TTAAGTCAAATATTAAGTAA+AGG + chr5_3:33840106-33840125 None:intergenic 15.0%
!! ATTATCACAATTTATTATCA+TGG + chr5_3:33840642-33840661 None:intergenic 15.0%
!!! TTGTTTACATTTATTTTTGA+AGG + chr5_3:33842026-33842045 None:intergenic 15.0%
!!! GATTTTTGACAATTTTTTTT+TGG - chr5_3:33842245-33842264 Msa0808780:intron 15.0%
!! AAAAATAAAAAAACTGAAAG+TGG + chr5_3:33842774-33842793 None:intergenic 15.0%
!! AAAAATTAAAAAACTGAAAG+TGG - chr5_3:33842871-33842890 Msa0808780:intron 15.0%
!!! AATATTTTGAAATCATCTTA+GGG + chr5_3:33843741-33843760 None:intergenic 15.0%
!! TATTATCAATTTATCATGAT+TGG + chr5_3:33844291-33844310 None:intergenic 15.0%
!! TAATTATATCTATTATCTTG+AGG + chr5_3:33844403-33844422 None:intergenic 15.0%
!! TAAATAATAAATACTTACGA+AGG - chr5_3:33845002-33845021 Msa0808780:CDS 15.0%
!! AAATAATAAATACTTACGAA+GGG - chr5_3:33845003-33845022 Msa0808780:CDS 15.0%
!!! GTTTCAAATATTTCTTTTTT+CGG + chr5_3:33845652-33845671 None:intergenic 15.0%
!!! TTTGTTTTGGAAGAAAAAAT+TGG - chr5_3:33838853-33838872 Msa0808780:intron 20.0%
!!! TACTTAACACTATATTTTCA+AGG - chr5_3:33839355-33839374 Msa0808780:intron 20.0%
!! TCTCATAATACATCAAAATT+TGG - chr5_3:33839638-33839657 Msa0808780:intron 20.0%
!! CAAAACGACTAATAATAAAA+TGG + chr5_3:33840307-33840326 None:intergenic 20.0%
!! AAAGAAGAAAGAGTAATATA+TGG - chr5_3:33840442-33840461 Msa0808780:intron 20.0%
!! AAAGAGTAATATATGGTAAA+GGG - chr5_3:33840449-33840468 Msa0808780:intron 20.0%
!!! AAATAATTTGTTTCTTTTGC+TGG + chr5_3:33840694-33840713 None:intergenic 20.0%
!! TTGTTAAAGCTTCATAAAAT+GGG - chr5_3:33840781-33840800 Msa0808780:intron 20.0%
!!! TGTCATTGAATTCAAATTTT+GGG + chr5_3:33842086-33842105 None:intergenic 20.0%
!!! TTGTCATTGAATTCAAATTT+TGG + chr5_3:33842087-33842106 None:intergenic 20.0%
!! TTATGTCAATAATTCTCATA+GGG + chr5_3:33842746-33842765 None:intergenic 20.0%
!! TTTATGTCAATAATTCTCAT+AGG + chr5_3:33842747-33842766 None:intergenic 20.0%
!!! TTTTTATTTTTGTCATGTAG+TGG - chr5_3:33842790-33842809 Msa0808780:intron 20.0%
!! TTTATGTCAATAATTGTCAT+AGG - chr5_3:33842898-33842917 Msa0808780:intron 20.0%
!! TTATGTCAATAATTGTCATA+GGG - chr5_3:33842899-33842918 Msa0808780:intron 20.0%
!!! CAACTCATTAATCTTTTAAA+GGG + chr5_3:33843290-33843309 None:intergenic 20.0%
!!! ACAACTCATTAATCTTTTAA+AGG + chr5_3:33843291-33843310 None:intergenic 20.0%
!! AAGTGTATTTCATTTCAAAT+GGG + chr5_3:33843316-33843335 None:intergenic 20.0%
!!! CAATATTTTGAAATCATCTT+AGG + chr5_3:33843742-33843761 None:intergenic 20.0%
!!! AGACTTTTAAATTATGAATG+TGG - chr5_3:33844180-33844199 Msa0808780:intron 20.0%
!!! TTATGGATTAGAGTAAATTA+GGG + chr5_3:33844255-33844274 None:intergenic 20.0%
!!! ATTATGGATTAGAGTAAATT+AGG + chr5_3:33844256-33844275 None:intergenic 20.0%
!! ACTCTAATCCATAATTAAAT+AGG - chr5_3:33844261-33844280 Msa0808780:intron 20.0%
!! CTCTAATCCATAATTAAATA+GGG - chr5_3:33844262-33844281 Msa0808780:intron 20.0%
!!! TAAAAAGAGTATTGAATTGT+AGG - chr5_3:33844498-33844517 Msa0808780:intron 20.0%
!!! TGTAAAATAGGCTTTTAAAT+AGG + chr5_3:33844899-33844918 None:intergenic 20.0%
!! TAAAGCCTATTTACTTAAAT+AGG + chr5_3:33845195-33845214 None:intergenic 20.0%
!!! ATTTTTAAAACAAGACAGAT+TGG - chr5_3:33845378-33845397 Msa0808780:CDS 20.0%
!!! GATTTTTCATTCAACAATAT+AGG + chr5_3:33845580-33845599 None:intergenic 20.0%
!!! AACAACTGATATTTTCTTTT+TGG - chr5_3:33846149-33846168 Msa0808780:exon 20.0%
!!! ACAACTGATATTTTCTTTTT+GGG - chr5_3:33846150-33846169 Msa0808780:exon 20.0%
! CATCACAAAAATCTAATCAA+CGG - chr5_3:33837888-33837907 Msa0808780:intron 25.0%
! ACTAAACTTAAACTTCGAAT+CGG + chr5_3:33838122-33838141 None:intergenic 25.0%
! TTAAGTTTAGTTATGTTGCT+TGG - chr5_3:33838131-33838150 Msa0808780:intron 25.0%
!! TAAGTTTAGTTATGTTGCTT+GGG - chr5_3:33838132-33838151 Msa0808780:intron 25.0%
!! GTTTGAAATTGGATAAAGAT+GGG - chr5_3:33838353-33838372 Msa0808780:intron 25.0%
!!! AAAGATGGGTTTTTTAGTTT+TGG - chr5_3:33838367-33838386 Msa0808780:intron 25.0%
!! AAACACCAATTTGTGTTTTT+GGG - chr5_3:33838985-33839004 Msa0808780:intron 25.0%
!!! ATTTCCATTTGTTATCAAAG+AGG - chr5_3:33839393-33839412 Msa0808780:intron 25.0%
! TCTTCAATTGAGTGATAAAT+AGG - chr5_3:33839432-33839451 Msa0808780:intron 25.0%
! TTAAATGCAACCTATATACT+AGG - chr5_3:33839692-33839711 Msa0808780:intron 25.0%
!! AAGATGATAGAGAAGATTTT+AGG + chr5_3:33841183-33841202 None:intergenic 25.0%
! TATTAAGTAAAGGGAAACTT+GGG + chr5_3:33840096-33840115 None:intergenic 25.0%
! ATATTAAGTAAAGGGAAACT+TGG + chr5_3:33840097-33840116 None:intergenic 25.0%
!! AACTTGCTTATATCTTGAAA+GGG - chr5_3:33840133-33840152 Msa0808780:intron 25.0%
!! TCTTGAAATCTAAAACTGAT+TGG - chr5_3:33840243-33840262 Msa0808780:intron 25.0%
!! TAATAATAAAATGGTGGTGA+CGG + chr5_3:33840298-33840317 None:intergenic 25.0%
! AACGACTAATAATAAAATGG+TGG + chr5_3:33840304-33840323 None:intergenic 25.0%
! GAAAGAGTAATATATGGTAA+AGG - chr5_3:33840448-33840467 Msa0808780:intron 25.0%
! TATTATCATGGATTCAATCA+CGG + chr5_3:33840630-33840649 None:intergenic 25.0%
! GGTATATATAGAAAAGAAAG+CGG + chr5_3:33840735-33840754 None:intergenic 25.0%
!! GCTTTCTTTTCTATATATAC+CGG - chr5_3:33840734-33840753 Msa0808780:CDS 25.0%
! CTTGTTAAAGCTTCATAAAA+TGG - chr5_3:33840780-33840799 Msa0808780:intron 25.0%
!!! AGTGGATTTTAAATTTGATG+GGG + chr5_3:33841001-33841020 None:intergenic 25.0%
!!! CAGTGGATTTTAAATTTGAT+GGG + chr5_3:33841002-33841021 None:intergenic 25.0%
!! AACTTGCTTATATCTTGAAA+GGG + chr5_3:33840133-33840152 None:intergenic 25.0%
!! AAGATGATAGAGAAGATTTT+AGG - chr5_3:33841183-33841202 Msa0808780:CDS 25.0%
!! AATCATTTGTTTAGTTTCAC+AGG - chr5_3:33841384-33841403 Msa0808780:CDS 25.0%
!! ATCATTTGTTTAGTTTCACA+GGG - chr5_3:33841385-33841404 Msa0808780:CDS 25.0%
! TTACTTTGCTAACATTCTAT+TGG - chr5_3:33841482-33841501 Msa0808780:intron 25.0%
! TACTTTGCTAACATTCTATT+GGG - chr5_3:33841483-33841502 Msa0808780:intron 25.0%
! TTTCCAGTAAATAGTTATTC+AGG - chr5_3:33841605-33841624 Msa0808780:intron 25.0%
! AAACCTGAATAACTATTTAC+TGG + chr5_3:33841611-33841630 None:intergenic 25.0%
! ACCAATAAATAAGAAATGAG+AGG - chr5_3:33841916-33841935 Msa0808780:intron 25.0%
!! TCCTCTCATTTCTTATTTAT+TGG + chr5_3:33841920-33841939 None:intergenic 25.0%
! AAAAGTAAATGCACATTTGA+GGG + chr5_3:33842128-33842147 None:intergenic 25.0%
!! TTGTCAAAAATCATGTTTTG+AGG + chr5_3:33842237-33842256 None:intergenic 25.0%
!!! GTCAGAAATGGAATTTTTTT+TGG + chr5_3:33842923-33842942 None:intergenic 25.0%
! TATGTCAATAATTCTCATAG+GGG + chr5_3:33842745-33842764 None:intergenic 25.0%
! TATGTCAATAATTGTCATAG+GGG - chr5_3:33842900-33842919 Msa0808780:intron 25.0%
!!! GTCAGAAATGGAATTTTTTT+TGG - chr5_3:33842923-33842942 Msa0808780:intron 25.0%
!!! TCATTAATCTTTTAAAGGGA+AGG + chr5_3:33843286-33843305 None:intergenic 25.0%
! CAAGTGTATTTCATTTCAAA+TGG + chr5_3:33843317-33843336 None:intergenic 25.0%
! GGACAAAAATGTTAATATAC+AGG - chr5_3:33843497-33843516 Msa0808780:intron 25.0%
! ATTATGATTGTTGAAGTTAC+AGG - chr5_3:33843629-33843648 Msa0808780:intron 25.0%
! TTATGATTGTTGAAGTTACA+GGG - chr5_3:33843653-33843672 Msa0808780:intron 25.0%
!!! TATTAGCTTACTTTAGCTTT+AGG + chr5_3:33843795-33843814 None:intergenic 25.0%
!! TTTTGATCTTAAGATCGATA+AGG - chr5_3:33843854-33843873 Msa0808780:intron 25.0%
! ACAATACTAAATTGAGATGA+TGG - chr5_3:33843900-33843919 Msa0808780:intron 25.0%
!! TTTAGTAGAGTTTCAGATTT+TGG - chr5_3:33844056-33844075 Msa0808780:intron 25.0%
!! TTAGTAGAGTTTCAGATTTT+GGG - chr5_3:33844057-33844076 Msa0808780:intron 25.0%
! TTATCAGGATTTGCATAAAT+AGG - chr5_3:33844142-33844161 Msa0808780:intron 25.0%
! TTGGTTTCCCTATTTAATTA+TGG + chr5_3:33844272-33844291 None:intergenic 25.0%
! AGAATGGTTTCAATATTTCT+TGG + chr5_3:33844315-33844334 None:intergenic 25.0%
! CTTATACAATCTCTTAAGAA+TGG + chr5_3:33844331-33844350 None:intergenic 25.0%
! ATTGAATTGTAGGAATTATC+AGG - chr5_3:33844508-33844527 Msa0808780:intron 25.0%
!! ATCCAATATAAAGTTTTCCT+TGG + chr5_3:33844609-33844628 None:intergenic 25.0%
! GGAAAACTTTATATTGGATA+TGG - chr5_3:33844610-33844629 Msa0808780:CDS 25.0%
! CTAGTATAATTGAAAGAAGT+AGG + chr5_3:33844656-33844675 None:intergenic 25.0%
! TTATACTAGTTGTTAAACTG+TGG - chr5_3:33844667-33844686 Msa0808780:CDS 25.0%
!! TAAAAGCCTATTTTACACTA+AGG - chr5_3:33844902-33844921 Msa0808780:CDS 25.0%
!! AAGTCATATTTGTGTGTTTT+AGG + chr5_3:33844978-33844997 None:intergenic 25.0%
!! TTTCATATGATTTGGCTATT+TGG + chr5_3:33845053-33845072 None:intergenic 25.0%
! ATATTAAAAGCTTAATAGGC+CGG - chr5_3:33845128-33845147 Msa0808780:CDS 25.0%
! GAAAGAAAATAACATCTACA+CGG + chr5_3:33845334-33845353 None:intergenic 25.0%
!! GCATTTTCTTCTATTAAGTA+GGG + chr5_3:33845358-33845377 None:intergenic 25.0%
!! TGCATTTTCTTCTATTAAGT+AGG + chr5_3:33845359-33845378 None:intergenic 25.0%
! CTTTACAAAACAAGAGAATA+AGG + chr5_3:33845471-33845490 None:intergenic 25.0%
!! TTTTCATTCAACAATATAGG+AGG + chr5_3:33845577-33845596 None:intergenic 25.0%
!!! CTTTTTTCGGTTAACATTTA+GGG + chr5_3:33845639-33845658 None:intergenic 25.0%
!!! TCTTTTTTCGGTTAACATTT+AGG + chr5_3:33845640-33845659 None:intergenic 25.0%
! AAGTATTTACTTTACACCAT+TGG + chr5_3:33845723-33845742 None:intergenic 25.0%
! GTGTATAGATTTAAATTTGC+TGG + chr5_3:33845780-33845799 None:intergenic 25.0%
!! ATTATTAATTTGATTCCTGC+AGG - chr5_3:33845914-33845933 Msa0808780:CDS 25.0%
!! CAACTGATATTTTCTTTTTG+GGG - chr5_3:33846151-33846170 Msa0808780:exon 25.0%
AATATTAGACCATGTTGTGT+TGG + chr5_3:33837559-33837578 None:intergenic 30.0%
AACACAACATGGTCTAATAT+TGG - chr5_3:33837558-33837577 Msa0808780:three_prime_UTR 30.0%
AACATGGTCTAATATTGGAA+TGG - chr5_3:33837563-33837582 Msa0808780:three_prime_UTR 30.0%
!! TGAGAAGATCGATGTTTTTA+GGG + chr5_3:33837835-33837854 None:intergenic 30.0%
ATGCTTATTCCTCTAAATTC+TGG - chr5_3:33837930-33837949 Msa0808780:intron 30.0%
! AGGTTTAATTCGAGTTCTAA+AGG - chr5_3:33838031-33838050 Msa0808780:intron 30.0%
!! TTAATTCGAGTTCTAAAGGT+AGG - chr5_3:33838035-33838054 Msa0808780:intron 30.0%
!! TAATTCGAGTTCTAAAGGTA+GGG - chr5_3:33838036-33838055 Msa0808780:intron 30.0%
! GGTTTGAAATTGGATAAAGA+TGG - chr5_3:33838352-33838371 Msa0808780:intron 30.0%
!!! TAGTTTTGGAATGATTGCTA+AGG - chr5_3:33838381-33838400 Msa0808780:intron 30.0%
!!! AGTTTTGGAATGATTGCTAA+GGG - chr5_3:33838382-33838401 Msa0808780:intron 30.0%
!! GGTTTGTATTGATTTGAATG+AGG - chr5_3:33838495-33838514 Msa0808780:intron 30.0%
!! TATTGATTTGAATGAGGTGT+TGG - chr5_3:33838501-33838520 Msa0808780:intron 30.0%
AAAACTTAGACAAAACCTCA+GGG + chr5_3:33838636-33838655 None:intergenic 30.0%
AAAAACTTAGACAAAACCTC+AGG + chr5_3:33838637-33838656 None:intergenic 30.0%
! TGTCTAAGTTTTTGAACAAG+AGG - chr5_3:33838644-33838663 Msa0808780:intron 30.0%
! GTCTAAGTTTTTGAACAAGA+GGG - chr5_3:33838645-33838664 Msa0808780:intron 30.0%
!! ATTACCTTTGAAATGAGTGA+AGG - chr5_3:33838778-33838797 Msa0808780:intron 30.0%
!! TTACCTTTGAAATGAGTGAA+GGG - chr5_3:33838779-33838798 Msa0808780:intron 30.0%
! TTTCGGCTAGTTATATTTCT+TGG - chr5_3:33838815-33838834 Msa0808780:intron 30.0%
! TTCGGCTAGTTATATTTCTT+GGG - chr5_3:33838816-33838835 Msa0808780:intron 30.0%
!!! GGAGAAAGTTAGTTTTGTTT+TGG - chr5_3:33838840-33838859 Msa0808780:intron 30.0%
TTTGACTAACAAATCCTGAA+TGG + chr5_3:33838968-33838987 None:intergenic 30.0%
! CAAACACCAATTTGTGTTTT+TGG - chr5_3:33838984-33839003 Msa0808780:intron 30.0%
AATCACCCAAAAACACAAAT+TGG + chr5_3:33838993-33839012 None:intergenic 30.0%
!!! ATTTGTGTTTTTGGGTGATT+CGG - chr5_3:33838993-33839012 Msa0808780:intron 30.0%
ATCAAACAACTCAATTGAGA+TGG - chr5_3:33839610-33839629 Msa0808780:intron 30.0%
TACTAATGTGCAATTTAGTG+TGG - chr5_3:33839664-33839683 Msa0808780:intron 30.0%
TAACTAAGAGCCTAGTATAT+AGG + chr5_3:33839705-33839724 None:intergenic 30.0%
CCAAATATTGTGGAATTCAA+AGG + chr5_3:33841242-33841261 None:intergenic 30.0%
CCTTTGAATTCCACAATATT+TGG - chr5_3:33839933-33839952 Msa0808780:intron 30.0%
! GAACTTGCTTATATCTTGAA+AGG - chr5_3:33840132-33840151 Msa0808780:intron 30.0%
! ATCTAAAACTGATTGGAAGA+TGG - chr5_3:33840250-33840269 Msa0808780:intron 30.0%
! TCTTGAAATCTGAAACTGAT+TGG + chr5_3:33840935-33840954 None:intergenic 30.0%
!! GCAGTGGATTTTAAATTTGA+TGG + chr5_3:33841003-33841022 None:intergenic 30.0%
! GAACTTGCTTATATCTTGAA+AGG + chr5_3:33840132-33840151 None:intergenic 30.0%
GACAGATATGGTCAAATAAT+AGG - chr5_3:33841066-33841085 Msa0808780:intron 30.0%
!! AAGATTTTAGGTGAGAGATT+CGG - chr5_3:33841195-33841214 Msa0808780:CDS 30.0%
TGAATTCCACAATATTTGGT+TGG + chr5_3:33841241-33841260 None:intergenic 30.0%
CCTTTGAATTCCACAATATT+TGG + chr5_3:33839933-33839952 None:intergenic 30.0%
CCAAATATTGTGGAATTCAA+AGG - chr5_3:33841242-33841261 Msa0808780:CDS 30.0%
ACTAACAAATCAAACGCAAA+TGG + chr5_3:33841329-33841348 None:intergenic 30.0%
! TCATTTGTTTAGTTTCACAG+GGG - chr5_3:33841386-33841405 Msa0808780:CDS 30.0%
TAACTGAGTTCCACATAATT+TGG - chr5_3:33841781-33841800 Msa0808780:intron 30.0%
! AAAATGGATCCCACTATTTT+GGG + chr5_3:33841818-33841837 None:intergenic 30.0%
! TAAAATGGATCCCACTATTT+TGG + chr5_3:33841819-33841838 None:intergenic 30.0%
ATGAGAGGAAAATAGATGAA+TGG - chr5_3:33841931-33841950 Msa0808780:intron 30.0%
TGAGAGGAAAATAGATGAAT+GGG - chr5_3:33841932-33841951 Msa0808780:intron 30.0%
GAAAAGTAAATGCACATTTG+AGG + chr5_3:33842129-33842148 None:intergenic 30.0%
! TCTTTTGCTACAGAGTAATA+TGG - chr5_3:33842276-33842295 Msa0808780:intron 30.0%
TCTCATTTACACACATTTAG+AGG - chr5_3:33842372-33842391 Msa0808780:intron 30.0%
GAAGAACAATTGTGTATAAG+TGG - chr5_3:33842435-33842454 Msa0808780:intron 30.0%
! TCATTTTCTTTGTATGCACA+TGG - chr5_3:33842643-33842662 Msa0808780:intron 30.0%
!!! TGGAATTTTTTTTGGCATGA+AGG + chr5_3:33842931-33842950 None:intergenic 30.0%
ATGTCAATAATTCTCATAGG+GGG + chr5_3:33842744-33842763 None:intergenic 30.0%
!!! TTTTTATTTCTGTCCTGTAG+TGG + chr5_3:33842855-33842874 None:intergenic 30.0%
ATGTCAATAATTGTCATAGG+GGG - chr5_3:33842901-33842920 Msa0808780:intron 30.0%
!!! TGGAATTTTTTTTGGCATGA+AGG - chr5_3:33842931-33842950 Msa0808780:intron 30.0%
TCATTTCAAAGTGCATTCTT+TGG - chr5_3:33842970-33842989 Msa0808780:intron 30.0%
CATTTCAAAGTGCATTCTTT+GGG - chr5_3:33842971-33842990 Msa0808780:intron 30.0%
ATATGAGAATGGTTGCATAA+AGG - chr5_3:33843235-33843254 Msa0808780:intron 30.0%
! CTTCTATTTGTTGCCTATTT+AGG - chr5_3:33843377-33843396 Msa0808780:intron 30.0%
AGTTCCAAAACATTGCATAA+TGG - chr5_3:33843423-33843442 Msa0808780:intron 30.0%
! AATCTTTTGCGCTATGTTTT+TGG - chr5_3:33843531-33843550 Msa0808780:intron 30.0%
! ATCTTTTGCGCTATGTTTTT+GGG - chr5_3:33843532-33843551 Msa0808780:intron 30.0%
!! CTAGGATTAGTTTATCAACA+TGG + chr5_3:33843702-33843721 None:intergenic 30.0%
! CATGTTGATAAACTAATCCT+AGG - chr5_3:33843700-33843719 Msa0808780:intron 30.0%
TAATCCTAGGAGATAAACTA+AGG - chr5_3:33843713-33843732 Msa0808780:intron 30.0%
!!! GTTGTTTTTCAGTTTCAAAG+TGG + chr5_3:33843823-33843842 None:intergenic 30.0%
AGATGAGATTCTAGACATAT+TGG - chr5_3:33843923-33843942 Msa0808780:intron 30.0%
!! CAGATTTTGGGTAATTTTGT+AGG - chr5_3:33844069-33844088 Msa0808780:intron 30.0%
! GTAATTTTGTAGGAGAATAG+TGG - chr5_3:33844079-33844098 Msa0808780:intron 30.0%
AGCCAAGGAAAACTTTATAT+TGG - chr5_3:33844604-33844623 Msa0808780:CDS 30.0%
ATATGGTGACAAGTCTATTA+AGG - chr5_3:33844627-33844646 Msa0808780:CDS 30.0%
! AGATACGAAAATACTTGTTG+AGG + chr5_3:33844693-33844712 None:intergenic 30.0%
!!! TATAATTTTTGAAGTAGGCC+AGG + chr5_3:33844792-33844811 None:intergenic 30.0%
TGGCCTACTTCAAAAATTAT+AGG - chr5_3:33844791-33844810 Msa0808780:CDS 30.0%
!!! AGGCCTATAATTTTTGAAGT+AGG + chr5_3:33844797-33844816 None:intergenic 30.0%
!! ATAAGTTTTGGCCTATTTAG+TGG + chr5_3:33844950-33844969 None:intergenic 30.0%
AAATAGGCCAAAACTTATGA+AGG - chr5_3:33844952-33844971 Msa0808780:CDS 30.0%
! TTTTAGGCCTTCATAAGTTT+TGG + chr5_3:33844962-33844981 None:intergenic 30.0%
! CTATTTGGTAGCAGATATAT+TGG + chr5_3:33845038-33845057 None:intergenic 30.0%
ACTCAAGCTTTCATATGATT+TGG + chr5_3:33845061-33845080 None:intergenic 30.0%
CCTATTTACTTAAATAGGCT+AGG + chr5_3:33845190-33845209 None:intergenic 30.0%
CCTAGCCTATTTAAGTAAAT+AGG - chr5_3:33845187-33845206 Msa0808780:CDS 30.0%
ATAATTGAAATCGCATGCTT+TGG - chr5_3:33845293-33845312 Msa0808780:CDS 30.0%
! TTTAAAACAAGACAGATTGG+AGG - chr5_3:33845381-33845400 Msa0808780:CDS 30.0%
TGCTGTATATATATGATGCT+CGG - chr5_3:33846036-33846055 Msa0808780:CDS 30.0%
!!! ATATTTTCTTTTTGGGGCAT+TGG - chr5_3:33846157-33846176 Msa0808780:five_prime_UTR 30.0%
! TCAAAATTGTCGTTTAGTCG+AGG - chr5_3:33837533-33837552 Msa0808780:three_prime_UTR 35.0%
!! CGTAATTTTGAAGACACACT+GGG + chr5_3:33837658-33837677 None:intergenic 35.0%
!! TCGTAATTTTGAAGACACAC+TGG + chr5_3:33837659-33837678 None:intergenic 35.0%
! TTTAACGAGTTGAGTACAAG+CGG + chr5_3:33837783-33837802 None:intergenic 35.0%
GTTAAATACTCTCCCAATCA+AGG - chr5_3:33837797-33837816 Msa0808780:three_prime_UTR 35.0%
!!! TGTTTTTAGGGAGAGAAGAA+GGG + chr5_3:33837823-33837842 None:intergenic 35.0%
!!! ATGTTTTTAGGGAGAGAAGA+AGG + chr5_3:33837824-33837843 None:intergenic 35.0%
! CTGAGAAGATCGATGTTTTT+AGG + chr5_3:33837836-33837855 None:intergenic 35.0%
!! TCTAAAGGTAGGGTTTGTTT+TGG - chr5_3:33838046-33838065 Msa0808780:intron 35.0%
!!! TTGTTTTGGAGTTAACCGTA+CGG - chr5_3:33838060-33838079 Msa0808780:intron 35.0%
TTAAACTTCGAATCGGTAAC+CGG + chr5_3:33838115-33838134 None:intergenic 35.0%
!! AAACATGGTGGATTGATGAA+CGG - chr5_3:33838325-33838344 Msa0808780:intron 35.0%
! AGCAGTGATTGCTTTGAATT+TGG - chr5_3:33838414-33838433 Msa0808780:intron 35.0%
! GTGATTGCTTTGAATTTGGA+AGG - chr5_3:33838418-33838437 Msa0808780:intron 35.0%
! TGCTTTGAATTTGGAAGGTT+TGG - chr5_3:33838423-33838442 Msa0808780:intron 35.0%
!!! TGTTTCTATTTTGACGAGCT+TGG - chr5_3:33838469-33838488 Msa0808780:intron 35.0%
ATCACACGAATCAATGTGTA+CGG - chr5_3:33838576-33838595 Msa0808780:intron 35.0%
ATCAATGTGTACGGAATGTT+TGG - chr5_3:33838585-33838604 Msa0808780:intron 35.0%
TTATTGGAAACAAACTCCCT+CGG - chr5_3:33838755-33838774 Msa0808780:intron 35.0%
TCATTTCAAAGGTAATCCGA+GGG + chr5_3:33838774-33838793 None:intergenic 35.0%
AATCCCTTCACTCATTTCAA+AGG + chr5_3:33838785-33838804 None:intergenic 35.0%
! TTTGAAATGAGTGAAGGGAT+TGG - chr5_3:33838784-33838803 Msa0808780:intron 35.0%
AAAGAGTCTGCTTAAGTGAT+AGG + chr5_3:33838888-33838907 None:intergenic 35.0%
! ACAACATCTGAACGATTTTC+CGG + chr5_3:33838931-33838950 None:intergenic 35.0%
ACACAACTTGGCAAGAATTA+CGG + chr5_3:33839052-33839071 None:intergenic 35.0%
! TTCACTGCTAGCTTATCTAA+AGG - chr5_3:33839183-33839202 Msa0808780:CDS 35.0%
ATTGAGCTTAAAGATCTGCA+AGG - chr5_3:33839210-33839229 Msa0808780:CDS 35.0%
CTGATAATTGACATTTGCCA+TGG - chr5_3:33839459-33839478 Msa0808780:intron 35.0%
ATTGACATTTGCCATGGATT+TGG - chr5_3:33839465-33839484 Msa0808780:intron 35.0%
!!! GTAGTTCTTTTTTCGAGCTT+AGG + chr5_3:33839560-33839579 None:intergenic 35.0%
! CTCAATTGAGTTGTTTGATG+TGG + chr5_3:33839609-33839628 None:intergenic 35.0%
TATATGTGACGATCATGCAA+TGG - chr5_3:33839794-33839813 Msa0808780:intron 35.0%
ATTGTCTCTGAATAACACTC+AGG - chr5_3:33839825-33839844 Msa0808780:intron 35.0%
TGAATTCCACAATATTTGGC+TGG - chr5_3:33839937-33839956 Msa0808780:intron 35.0%
!! AAGATTTTAGGTGAGAGACT+CGG + chr5_3:33839983-33840002 None:intergenic 35.0%
CTTGTACGTCGATATTAAAG+AGG + chr5_3:33841147-33841166 None:intergenic 35.0%
TACAAGCATATTTAGACCTG+TGG - chr5_3:33840045-33840064 Msa0808780:intron 35.0%
ATTTAGACCTGTGGAATTCT+CGG - chr5_3:33840054-33840073 Msa0808780:intron 35.0%
CAAAGGAAGATTCAATTGCT+TGG + chr5_3:33840605-33840624 None:intergenic 35.0%
AAGAAAGCGGTTGAAAACAA+GGG + chr5_3:33840722-33840741 None:intergenic 35.0%
AAAGAAAGCGGTTGAAAACA+AGG + chr5_3:33840723-33840742 None:intergenic 35.0%
!! CATAAAATGGGTTGTCTATG+TGG - chr5_3:33840793-33840812 Msa0808780:intron 35.0%
! ATCTGAAACTGATTGGAAGA+TGG + chr5_3:33840928-33840947 None:intergenic 35.0%
GGGTTTGTCTAATATATGTC+TGG + chr5_3:33841025-33841044 None:intergenic 35.0%
ATAAGCAAGTTCGACAGATA+TGG - chr5_3:33841054-33841073 Msa0808780:intron 35.0%
CTTGTACGTCGATATTAAAG+AGG - chr5_3:33841147-33841166 Msa0808780:intron 35.0%
AACAGACCAACCAAATATTG+TGG - chr5_3:33841232-33841251 Msa0808780:CDS 35.0%
! CATTTGTTTAGTTTCACAGG+GGG - chr5_3:33841387-33841406 Msa0808780:CDS 35.0%
!! ACGGACAGTTTTATCAAAAG+AGG + chr5_3:33841427-33841446 None:intergenic 35.0%
TTGATAAAACTGTCCGTGTA+TGG - chr5_3:33841430-33841449 Msa0808780:intron 35.0%
!! ATTTAGAAGTGTTACCTGCA+AGG + chr5_3:33841457-33841476 None:intergenic 35.0%
TCATGAATAATCTTTGCACG+AGG - chr5_3:33841527-33841546 Msa0808780:intron 35.0%
!! ATCAAAAGGTATCTGCTAAC+TGG + chr5_3:33841652-33841671 None:intergenic 35.0%
AGTGCTAAGCACTTATCAAA+AGG + chr5_3:33841666-33841685 None:intergenic 35.0%
TCGTGTGAATTTCAACCAAT+GGG + chr5_3:33841748-33841767 None:intergenic 35.0%
TTCGTGTGAATTTCAACCAA+TGG + chr5_3:33841749-33841768 None:intergenic 35.0%
TGAGTTCCACATAATTTGGT+GGG - chr5_3:33841785-33841804 Msa0808780:intron 35.0%
! AAATGGATCCCACTATTTTG+GGG + chr5_3:33841817-33841836 None:intergenic 35.0%
TGCGTATTGTCTATCACAAA+TGG + chr5_3:33841972-33841991 None:intergenic 35.0%
! CATCCATGCAAATTTTATGC+AGG - chr5_3:33842344-33842363 Msa0808780:CDS 35.0%
AGTCCTGCATAAAATTTGCA+TGG + chr5_3:33842350-33842369 None:intergenic 35.0%
AGGTCATGAGAATAAAGTCA+TGG - chr5_3:33842392-33842411 Msa0808780:intron 35.0%
TTCTCATACCATTTCCTCAA+GGG + chr5_3:33842516-33842535 None:intergenic 35.0%
AATGGTATGAGAAGAAGGAT+TGG - chr5_3:33842523-33842542 Msa0808780:intron 35.0%
AAGATTTCCAAAAGCAGTCA+AGG + chr5_3:33842568-33842587 None:intergenic 35.0%
TTTGGAAATCTTCTCTACAC+TGG - chr5_3:33842576-33842595 Msa0808780:intron 35.0%
GAGATAGAACAATCAAAGCT+TGG - chr5_3:33842604-33842623 Msa0808780:intron 35.0%
AATCAAAGCTTGGTCATTGA+AGG - chr5_3:33842614-33842633 Msa0808780:intron 35.0%
ATTAAGACTCCACAATCGAA+CGG + chr5_3:33843120-33843139 None:intergenic 35.0%
! ATTTGTTGCCTATTTAGGTC+TGG - chr5_3:33843382-33843401 Msa0808780:intron 35.0%
TCATTTCTCCAGACCTAAAT+AGG + chr5_3:33843393-33843412 None:intergenic 35.0%
!!! TATGCAATGTTTTGGAACTC+AGG + chr5_3:33843422-33843441 None:intergenic 35.0%
!! ATTTTTGCTATGAGTCTGCA+GGG - chr5_3:33843450-33843469 Msa0808780:intron 35.0%
TATCAACATGGTTGTGAACA+TGG + chr5_3:33843690-33843709 None:intergenic 35.0%
AGTATTGTCTCATATTCCAG+AGG + chr5_3:33843888-33843907 None:intergenic 35.0%
GACATGAATATGTTTACAGC+TGG - chr5_3:33844011-33844030 Msa0808780:intron 35.0%
AATAGTGGCACAATCTATCA+AGG - chr5_3:33844094-33844113 Msa0808780:intron 35.0%
AAATCCTGATAACTCCAACA+TGG + chr5_3:33844134-33844153 None:intergenic 35.0%
! AGGCTTTTAAATAGGCTTTC+AGG + chr5_3:33844891-33844910 None:intergenic 35.0%
CTATAAGCCTACCACTAAAT+AGG - chr5_3:33844936-33844955 Msa0808780:CDS 35.0%
AAAAAGCCTATTAAGCTCGT+CGG + chr5_3:33845155-33845174 None:intergenic 35.0%
TACTTAAATAGGCTAGGCTA+AGG + chr5_3:33845184-33845203 None:intergenic 35.0%
CTTTATAAAAAGCTTGAGCC+TGG - chr5_3:33845210-33845229 Msa0808780:CDS 35.0%
! GCCTTTTTATTAAACGAGCT+GGG - chr5_3:33845232-33845251 Msa0808780:CDS 35.0%
TGATCATCCACATAGGAATT+AGG + chr5_3:33845410-33845429 None:intergenic 35.0%
AATAAGGCAGGTTGTCAAAT+AGG + chr5_3:33845455-33845474 None:intergenic 35.0%
ACAAAACAAGAGAATAAGGC+AGG + chr5_3:33845467-33845486 None:intergenic 35.0%
! CCATTGGTAGAATATTTCTG+TGG + chr5_3:33845707-33845726 None:intergenic 35.0%
CCACAGAAATATTCTACCAA+TGG - chr5_3:33845704-33845723 Msa0808780:CDS 35.0%
GCATAAACAAGAGACAGAAA+AGG + chr5_3:33845867-33845886 None:intergenic 35.0%
ATTGGATTATCTACATCTGG+GGG + chr5_3:33846092-33846111 None:intergenic 35.0%
GATTGGATTATCTACATCTG+GGG + chr5_3:33846093-33846112 None:intergenic 35.0%
GGATTGGATTATCTACATCT+GGG + chr5_3:33846094-33846113 None:intergenic 35.0%
! TGGATTGGATTATCTACATC+TGG + chr5_3:33846095-33846114 None:intergenic 35.0%
! TGTAGAGGCATAATTTGGAT+TGG + chr5_3:33846110-33846129 None:intergenic 35.0%
AATCCAAATTATGCCTCTAC+AGG - chr5_3:33846109-33846128 Msa0808780:CDS 35.0%
ATCCAAATTATGCCTCTACA+GGG - chr5_3:33846110-33846129 Msa0808780:CDS 35.0%
GGGTTTGTATATAACTTGAC+AGG - chr5_3:33846186-33846205 Msa0808780:five_prime_UTR 35.0%
GAAACTGTAAACAGCTGTTC+TGG - chr5_3:33837611-33837630 Msa0808780:three_prime_UTR 40.0%
CGAATTGTGTTTGGAAAACG+CGG + chr5_3:33837755-33837774 None:intergenic 40.0%
! TTAACGAGTTGAGTACAAGC+GGG + chr5_3:33837782-33837801 None:intergenic 40.0%
!! AGAGTGTTGTGGTTGTTGAA+GGG + chr5_3:33837864-33837883 None:intergenic 40.0%
!! AAGAGTGTTGTGGTTGTTGA+AGG + chr5_3:33837865-33837884 None:intergenic 40.0%
!! TGTGATGAAGAAGAGTGTTG+TGG + chr5_3:33837875-33837894 None:intergenic 40.0%
AATCAACGGTCCTCAATCAA+CGG - chr5_3:33837902-33837921 Msa0808780:intron 40.0%
! AGCATATTCACCGTTGATTG+AGG + chr5_3:33837915-33837934 None:intergenic 40.0%
CTCATCAGACCAGAATTTAG+AGG + chr5_3:33837942-33837961 None:intergenic 40.0%
TCCGATCATTACTTTGTCTC+CGG - chr5_3:33838093-33838112 Msa0808780:intron 40.0%
ACCGGAGACAAAGTAATGAT+CGG + chr5_3:33838097-33838116 None:intergenic 40.0%
TGCTTGGGTTATCAAGTGTT+TGG - chr5_3:33838147-33838166 Msa0808780:intron 40.0%
TTGGGTTATCAAGTGTTTGG+AGG - chr5_3:33838150-33838169 Msa0808780:intron 40.0%
TGGGTTATCAAGTGTTTGGA+GGG - chr5_3:33838151-33838170 Msa0808780:intron 40.0%
! TGATTCTAGAAGCTTCTGTG+AGG - chr5_3:33838206-33838225 Msa0808780:intron 40.0%
AGTAGGTTGTGTAGGGTTTA+TGG - chr5_3:33838232-33838251 Msa0808780:intron 40.0%
GTAGGTTGTGTAGGGTTTAT+GGG - chr5_3:33838233-33838252 Msa0808780:intron 40.0%
!! TGTTGGTGGTAGTCTGTATT+TGG - chr5_3:33838270-33838289 Msa0808780:intron 40.0%
!! AACATGGTGGATTGATGAAC+GGG - chr5_3:33838326-33838345 Msa0808780:intron 40.0%
! AATTTGGAAGGTTTGGTTGC+TGG - chr5_3:33838430-33838449 Msa0808780:intron 40.0%
!!! TTCTATTTTGACGAGCTTGG+TGG - chr5_3:33838472-33838491 Msa0808780:intron 40.0%
!!! TCTATTTTGACGAGCTTGGT+GGG - chr5_3:33838473-33838492 Msa0808780:intron 40.0%
!! TTTGAATGAGGTGTTGGTGA+TGG - chr5_3:33838507-33838526 Msa0808780:intron 40.0%
!! TTGAATGAGGTGTTGGTGAT+GGG - chr5_3:33838508-33838527 Msa0808780:intron 40.0%
CTTATGGATCAGGTTTCTTG+TGG - chr5_3:33838538-33838557 Msa0808780:intron 40.0%
!! GTACACATTGATTCGTGTGA+TGG + chr5_3:33838577-33838596 None:intergenic 40.0%
GGGATTCGAGATATCCAATT+GGG - chr5_3:33838686-33838705 Msa0808780:intron 40.0%
TCGAGATATCCAATTGGGTT+TGG - chr5_3:33838691-33838710 Msa0808780:intron 40.0%
ATATCCAATTGGGTTTGGCT+CGG - chr5_3:33838696-33838715 Msa0808780:intron 40.0%
CTCATTTCAAAGGTAATCCG+AGG + chr5_3:33838775-33838794 None:intergenic 40.0%
!! AGGGATTGGTCTTGATGTTT+CGG - chr5_3:33838798-33838817 Msa0808780:intron 40.0%
! GGCTAGTTATATTTCTTGGG+TGG - chr5_3:33838819-33838838 Msa0808780:intron 40.0%
GGAAAATCGTTCAGATGTTG+TGG - chr5_3:33838930-33838949 Msa0808780:intron 40.0%
GTTCAGATGTTGTGGATGTA+AGG - chr5_3:33838938-33838957 Msa0808780:intron 40.0%
GGATGTAAGGAAATCCATTC+AGG - chr5_3:33838951-33838970 Msa0808780:intron 40.0%
ATTCGGAGCTTACGGTAAAT+AGG - chr5_3:33839010-33839029 Msa0808780:intron 40.0%
ACGGTAAATAGGAACAACAC+AGG - chr5_3:33839021-33839040 Msa0808780:intron 40.0%
GAATTGCAGGCAAAAGAAGA+TGG - chr5_3:33839111-33839130 Msa0808780:intron 40.0%
ACCTGATATTCTTCAGAGTG+TGG - chr5_3:33839140-33839159 Msa0808780:CDS 40.0%
! TCCACACTCTGAAGAATATC+AGG + chr5_3:33839144-33839163 None:intergenic 40.0%
ATCCAGTGATACAACCAAGA+TGG + chr5_3:33839236-33839255 None:intergenic 40.0%
!! TGTATCACTGGATTAGCTGT+AGG - chr5_3:33839243-33839262 Msa0808780:CDS 40.0%
! GTCGCCTCTTTGATAACAAA+TGG + chr5_3:33839400-33839419 None:intergenic 40.0%
ACATTTGCCATGGATTTGGA+CGG - chr5_3:33839469-33839488 Msa0808780:intron 40.0%
!! TCACCATACAGCTTTTGAGT+TGG - chr5_3:33839496-33839515 Msa0808780:intron 40.0%
CAACCAACTCAAAAGCTGTA+TGG + chr5_3:33839502-33839521 None:intergenic 40.0%
!!! CATACAGCTTTTGAGTTGGT+TGG - chr5_3:33839500-33839519 Msa0808780:intron 40.0%
AACTACACGAAAATCACACG+AGG - chr5_3:33839574-33839593 Msa0808780:intron 40.0%
ACTACACGAAAATCACACGA+GGG - chr5_3:33839575-33839594 Msa0808780:intron 40.0%
GCTCTTAGTTAGCATATGTG+TGG - chr5_3:33839714-33839733 Msa0808780:intron 40.0%
CTTAGTTAGCATATGTGTGG+AGG - chr5_3:33839717-33839736 Msa0808780:intron 40.0%
GGTTGCTTCACCTATTTCAT+CGG - chr5_3:33839738-33839757 Msa0808780:intron 40.0%
TGAAACACTGCCGATGAAAT+AGG + chr5_3:33839751-33839770 None:intergenic 40.0%
!! TAATAAAATGGTGGTGACGG+AGG + chr5_3:33840295-33840314 None:intergenic 40.0%
! TGATGACTAGAAAGTGTGTC+CGG + chr5_3:33840756-33840775 None:intergenic 40.0%
GTCTAATATATGTCTGGCAG+TGG + chr5_3:33841019-33841038 None:intergenic 40.0%
ATCTAGACCAGTGGAATTCT+CGG + chr5_3:33841124-33841143 None:intergenic 40.0%
TACAAGCATATCTAGACCAG+TGG + chr5_3:33841133-33841152 None:intergenic 40.0%
CTTGCTAATACTCTCCTTTC+AGG - chr5_3:33841715-33841734 Msa0808780:intron 40.0%
CTGAGTTCCACATAATTTGG+TGG - chr5_3:33841784-33841803 Msa0808780:intron 40.0%
ATGAGTCCCACCAAATTATG+TGG + chr5_3:33841794-33841813 None:intergenic 40.0%
TACTAATCCTGCATAGCTGA+AGG + chr5_3:33842155-33842174 None:intergenic 40.0%
TTGTGTATAAGTGGTGACAG+TGG - chr5_3:33842444-33842463 Msa0808780:intron 40.0%
CTTCTCATACCATTTCCTCA+AGG + chr5_3:33842517-33842536 None:intergenic 40.0%
GAGGAAATGGTATGAGAAGA+AGG - chr5_3:33842518-33842537 Msa0808780:intron 40.0%
! ATCCATTCCTTGACTGCTTT+TGG - chr5_3:33842558-33842577 Msa0808780:intron 40.0%
TTCCAAAAGCAGTCAAGGAA+TGG + chr5_3:33842563-33842582 None:intergenic 40.0%
AATCTTCTCTACACTGGAAG+TGG - chr5_3:33842582-33842601 Msa0808780:intron 40.0%
ATTACCGCCAAATCAAATGG+CGG + chr5_3:33842830-33842849 None:intergenic 40.0%
GTCATTACCGCCAAATCAAA+TGG + chr5_3:33842833-33842852 None:intergenic 40.0%
TGGAACTTTGATGTGCACAA+TGG - chr5_3:33843022-33843041 Msa0808780:intron 40.0%
ACTTTGATGTGCACAATGGA+TGG - chr5_3:33843026-33843045 Msa0808780:intron 40.0%
GTGTGGAAACTACAGATTTG+TGG + chr5_3:33843052-33843071 None:intergenic 40.0%
CTCATCACATACTGAAAGTG+TGG + chr5_3:33843069-33843088 None:intergenic 40.0%
CACACTTTCAGTATGTGATG+AGG - chr5_3:33843067-33843086 Msa0808780:intron 40.0%
TGTGATGAGGTTCTTTACAG+TGG - chr5_3:33843080-33843099 Msa0808780:intron 40.0%
AGGTTCTTTACAGTGGTAGT+TGG - chr5_3:33843087-33843106 Msa0808780:intron 40.0%
GGTTCTTTACAGTGGTAGTT+GGG - chr5_3:33843088-33843107 Msa0808780:intron 40.0%
TCTTAATGATCATAGCCCGT+TGG - chr5_3:33843133-33843152 Msa0808780:intron 40.0%
GACTCGATATAATCATCTCC+TGG - chr5_3:33843336-33843355 Msa0808780:intron 40.0%
AATCATCTCCTGGCATTGTT+AGG - chr5_3:33843346-33843365 Msa0808780:intron 40.0%
AGATGTTACCTAACAATGCC+AGG + chr5_3:33843357-33843376 None:intergenic 40.0%
! GGCACCATTATGCAATGTTT+TGG + chr5_3:33843430-33843449 None:intergenic 40.0%
CTGCAGACTCATAGCAAAAA+TGG + chr5_3:33843451-33843470 None:intergenic 40.0%
!! CATTTTTGCTATGAGTCTGC+AGG - chr5_3:33843449-33843468 Msa0808780:intron 40.0%
!! CAGGGAAAATGGCTTTATAC+AGG - chr5_3:33843468-33843487 Msa0808780:intron 40.0%
!! GGAAAATGGCTTTATACAGG+AGG - chr5_3:33843471-33843490 Msa0808780:intron 40.0%
!! AATGGCTTTATACAGGAGGT+TGG - chr5_3:33843475-33843494 Msa0808780:intron 40.0%
!! ATGGCTTTATACAGGAGGTT+GGG - chr5_3:33843476-33843495 Msa0808780:intron 40.0%
GGTACCTTAGTTTATCTCCT+AGG + chr5_3:33843720-33843739 None:intergenic 40.0%
GCACAATCTATCAAGGAAGA+TGG - chr5_3:33844101-33844120 Msa0808780:intron 40.0%
AATGGATCCAAATGCGTTGA+CGG + chr5_3:33844551-33844570 None:intergenic 40.0%
AGCATGCTTTGTGTTGCATA+GGG - chr5_3:33844724-33844743 Msa0808780:CDS 40.0%
!! ATAAGCCTATGACGGGTAAT+AGG + chr5_3:33844828-33844847 None:intergenic 40.0%
CTCGAAAATAAGCCTATGAC+GGG + chr5_3:33844835-33844854 None:intergenic 40.0%
CCTCGAAAATAAGCCTATGA+CGG + chr5_3:33844836-33844855 None:intergenic 40.0%
! GCTTCATCAGGCCTTTAAAA+AGG + chr5_3:33844869-33844888 None:intergenic 40.0%
CCTAGGCCTTAGTGTAAAAT+AGG + chr5_3:33844911-33844930 None:intergenic 40.0%
! CCTATTTTACACTAAGGCCT+AGG - chr5_3:33844908-33844927 Msa0808780:CDS 40.0%
GTAGGCTTATAGATGTTCCT+AGG + chr5_3:33844928-33844947 None:intergenic 40.0%
!! GTTTTGGCCTATTTAGTGGT+AGG + chr5_3:33844946-33844965 None:intergenic 40.0%
AAAAGCCTATTAAGCTCGTC+GGG + chr5_3:33845154-33845173 None:intergenic 40.0%
GCTCGTTTAATAAAAAGGCC+AGG + chr5_3:33845231-33845250 None:intergenic 40.0%
! GGCCTTTTTATTAAACGAGC+TGG - chr5_3:33845231-33845250 Msa0808780:CDS 40.0%
GCCCAGCTCGTTTAATAAAA+AGG + chr5_3:33845236-33845255 None:intergenic 40.0%
AATAACATCTACACGGCTCT+AGG + chr5_3:33845327-33845346 None:intergenic 40.0%
GGTCGGATGTTAATATTTCC+TGG + chr5_3:33845434-33845453 None:intergenic 40.0%
AATTGAAGCTTGTCACACAC+TGG + chr5_3:33845498-33845517 None:intergenic 40.0%
ATGCTAGCTACTGATGCATA+TGG - chr5_3:33845527-33845546 Msa0808780:CDS 40.0%
! AGTGTATGTTCAGCTTTGTG+AGG - chr5_3:33845678-33845697 Msa0808780:CDS 40.0%
ATTCTATCAACTCTCTGTCG+AGG + chr5_3:33845802-33845821 None:intergenic 40.0%
ATTTAGCACGATAAACCTGC+AGG + chr5_3:33845932-33845951 None:intergenic 40.0%
TTGTGAATCAACCAGAACTC+TGG + chr5_3:33846065-33846084 None:intergenic 40.0%
TTGGATTATCTACATCTGGG+GGG + chr5_3:33846091-33846110 None:intergenic 40.0%
!!! TTTTTGGGGCATTGGTTCTT+GGG - chr5_3:33846165-33846184 Msa0808780:five_prime_UTR 40.0%
TGTAAACAGCTGTTCTGGCA+TGG - chr5_3:33837616-33837635 Msa0808780:three_prime_UTR 45.0%
ATTCCACGAGTACTCTCATG+CGG - chr5_3:33837692-33837711 Msa0808780:three_prime_UTR 45.0%
GACAAGCTTCGCAAATAGTG+TGG + chr5_3:33837718-33837737 None:intergenic 45.0%
ATTGTGTTTGGAAAACGCGG+TGG + chr5_3:33837752-33837771 None:intergenic 45.0%
! TAACGAGTTGAGTACAAGCG+GGG + chr5_3:33837781-33837800 None:intergenic 45.0%
AGAGAAGAAGGGCCTTGATT+GGG + chr5_3:33837812-33837831 None:intergenic 45.0%
! CTGATGAGTTTTACGCTGCT+TGG - chr5_3:33837954-33837973 Msa0808780:intron 45.0%
! TGAGTTTTACGCTGCTTGGA+AGG - chr5_3:33837958-33837977 Msa0808780:intron 45.0%
TTTACGCTGCTTGGAAGGAT+TGG - chr5_3:33837963-33837982 Msa0808780:intron 45.0%
TCGGAGTTAAACTCACCGTA+CGG + chr5_3:33838078-33838097 None:intergenic 45.0%
GGGTTATCAAGTGTTTGGAG+GGG - chr5_3:33838152-33838171 Msa0808780:intron 45.0%
TTGAATGAGGTTGTGAGGGA+AGG - chr5_3:33838175-33838194 Msa0808780:intron 45.0%
TGAATGAGGTTGTGAGGGAA+GGG - chr5_3:33838176-33838195 Msa0808780:intron 45.0%
! TGTGTAGGGTTTATGGGTTG+TGG - chr5_3:33838239-33838258 Msa0808780:intron 45.0%
!! GTCTGTATTTGGTGTGTGAG+AGG - chr5_3:33838281-33838300 Msa0808780:intron 45.0%
!! GGTAGGGTATTGGAGAAACA+TGG - chr5_3:33838310-33838329 Msa0808780:intron 45.0%
!! AGGGTATTGGAGAAACATGG+TGG - chr5_3:33838313-33838332 Msa0808780:intron 45.0%
!! ACATGGTGGATTGATGAACG+GGG - chr5_3:33838327-33838346 Msa0808780:intron 45.0%
! AGGTTTGGTTGCTGGATGTT+TGG - chr5_3:33838438-33838457 Msa0808780:intron 45.0%
! GGTTTGGTTGCTGGATGTTT+GGG - chr5_3:33838439-33838458 Msa0808780:intron 45.0%
!!! CTATTTTGACGAGCTTGGTG+GGG - chr5_3:33838474-33838493 Msa0808780:intron 45.0%
! TGAGCTTTTTGTTAGCCCTG+AGG - chr5_3:33838618-33838637 Msa0808780:intron 45.0%
AGGGTTGTTAATCCAGAGAG+CGG - chr5_3:33838664-33838683 Msa0808780:intron 45.0%
GGGGATTCGAGATATCCAAT+TGG - chr5_3:33838685-33838704 Msa0808780:intron 45.0%
! TTTGGGTGATTCGGAGCTTA+CGG - chr5_3:33839002-33839021 Msa0808780:intron 45.0%
GTTGCTCGAGGAAAGTTCTA+AGG - chr5_3:33839074-33839093 Msa0808780:intron 45.0%
TTGCAGGCAAAAGAAGATGG+TGG - chr5_3:33839114-33839133 Msa0808780:intron 45.0%
AAAGATCTGCAAGGCCATCT+TGG - chr5_3:33839219-33839238 Msa0808780:CDS 45.0%
!! ATCACTGGATTAGCTGTAGG+AGG - chr5_3:33839246-33839265 Msa0808780:CDS 45.0%
TTGTTATCAAAGAGGCGACG+CGG - chr5_3:33839401-33839420 Msa0808780:intron 45.0%
CTACACGAAAATCACACGAG+GGG - chr5_3:33839576-33839595 Msa0808780:intron 45.0%
! TGAAGGAACTTTGTGCTGGT+CGG + chr5_3:33839881-33839900 None:intergenic 45.0%
CTTGTGAAGGAACTTTGTGC+TGG + chr5_3:33839885-33839904 None:intergenic 45.0%
CAGCACAAAGTTCCTTCACA+AGG - chr5_3:33839883-33839902 Msa0808780:intron 45.0%
CTTAAGTGTGCACCTTGTGA+AGG + chr5_3:33839898-33839917 None:intergenic 45.0%
!! GGAATTCAAAGGTGCTTACG+AGG + chr5_3:33839925-33839944 None:intergenic 45.0%
ATCAGGCCAGCCAAATATTG+TGG + chr5_3:33839946-33839965 None:intergenic 45.0%
! CGGATTCTGCAGCTTTTATC+AGG + chr5_3:33839963-33839982 None:intergenic 45.0%
GGGTTTGCCTAATATGTGTC+TGG - chr5_3:33840153-33840172 Msa0808780:intron 45.0%
TCCACTGCCAGACACATATT+AGG + chr5_3:33840163-33840182 None:intergenic 45.0%
!! ATGTGTCTGGCAGTGGATTT+TGG - chr5_3:33840166-33840185 Msa0808780:intron 45.0%
TGGATTCAATCACGGCACAA+AGG + chr5_3:33840622-33840641 None:intergenic 45.0%
!! AATGGGTTGTCTATGTGGCA+AGG - chr5_3:33840798-33840817 Msa0808780:intron 45.0%
! ATGGGTTGTCTATGTGGCAA+GGG - chr5_3:33840799-33840818 Msa0808780:intron 45.0%
TGGGCACTAACTTCTACAAC+TGG + chr5_3:33840832-33840851 None:intergenic 45.0%
TATATGTGGCGGTTGATCCA+TGG + chr5_3:33840855-33840874 None:intergenic 45.0%
! TGTGTCTGTGACTGTGGTTT+TGG + chr5_3:33840964-33840983 None:intergenic 45.0%
! TTTTGCACCGAGAATTCCAC+TGG - chr5_3:33841114-33841133 Msa0808780:intron 45.0%
GCTCTCTCTGAATAACACTC+AGG + chr5_3:33841298-33841317 None:intergenic 45.0%
TTACCTGCAAGGACCATACA+CGG + chr5_3:33841446-33841465 None:intergenic 45.0%
!! CTGCTAACTGGTGTCATGTT+GGG + chr5_3:33841640-33841659 None:intergenic 45.0%
!! TCTGCTAACTGGTGTCATGT+TGG + chr5_3:33841641-33841660 None:intergenic 45.0%
GGACTCATCCCCAAAATAGT+GGG - chr5_3:33841806-33841825 Msa0808780:intron 45.0%
CAAGTGTGTTTGCTCTTGAG+TGG - chr5_3:33842043-33842062 Msa0808780:intron 45.0%
AATCCTGCATAGCTGAAGGT+GGG + chr5_3:33842151-33842170 None:intergenic 45.0%
TAATCCTGCATAGCTGAAGG+TGG + chr5_3:33842152-33842171 None:intergenic 45.0%
ACACGTCAACAGAATAGCTG+AGG + chr5_3:33842322-33842341 None:intergenic 45.0%
TGTATAAGTGGTGACAGTGG+CGG - chr5_3:33842447-33842466 Msa0808780:intron 45.0%
CTCAAGGGATCTTGACTAAG+AGG + chr5_3:33842501-33842520 None:intergenic 45.0%
CTCTTAGTCAAGATCCCTTG+AGG - chr5_3:33842499-33842518 Msa0808780:intron 45.0%
GTCAAGATCCCTTGAGGAAA+TGG - chr5_3:33842505-33842524 Msa0808780:intron 45.0%
! AAGAAGGATTGGCGCTTTAG+TGG - chr5_3:33842534-33842553 Msa0808780:intron 45.0%
TTCTCATAGGGGGTCAGAAA+TGG + chr5_3:33842734-33842753 None:intergenic 45.0%
! CAAATCAAATGGCGGTTTGG+CGG + chr5_3:33842822-33842841 None:intergenic 45.0%
!! CAAACCGCCATTTGATTTGG+CGG - chr5_3:33842823-33842842 Msa0808780:intron 45.0%
TTGTCATAGGGGGTCAGAAA+TGG - chr5_3:33842911-33842930 Msa0808780:intron 45.0%
CTTTACAGTGGTAGTTGGGA+TGG - chr5_3:33843092-33843111 Msa0808780:intron 45.0%
TAATGATCATAGCCCGTTGG+TGG - chr5_3:33843136-33843155 Msa0808780:intron 45.0%
CTGGTTGCAGCATATGAGAA+TGG - chr5_3:33843224-33843243 Msa0808780:intron 45.0%
CTATGAGTCTGCAGGGAAAA+TGG - chr5_3:33843457-33843476 Msa0808780:intron 45.0%
CGATAAGGTCAAATCACCTC+TGG - chr5_3:33843869-33843888 Msa0808780:intron 45.0%
AAGATGGTACCACTCCATGT+TGG - chr5_3:33844117-33844136 Msa0808780:intron 45.0%
CTGATAACTCCAACATGGAG+TGG + chr5_3:33844129-33844148 None:intergenic 45.0%
CACTCCATGTTGGAGTTATC+AGG - chr5_3:33844127-33844146 Msa0808780:intron 45.0%
CACAACAGAACTGGAAGGAA+TGG + chr5_3:33844569-33844588 None:intergenic 45.0%
CATAGCTGTCACAACAGAAC+TGG + chr5_3:33844578-33844597 None:intergenic 45.0%
ACAGCTATGTTATGCAGCCA+AGG - chr5_3:33844589-33844608 Msa0808780:CDS 45.0%
GAGCATGCTTTGTGTTGCAT+AGG - chr5_3:33844723-33844742 Msa0808780:CDS 45.0%
GCATGCTTTGTGTTGCATAG+GGG - chr5_3:33844725-33844744 Msa0808780:CDS 45.0%
TGTTGCATAGGGGTGGAAAT+GGG - chr5_3:33844735-33844754 Msa0808780:CDS 45.0%
!!! TTTTGAAGTAGGCCAGGCTT+AGG + chr5_3:33844786-33844805 None:intergenic 45.0%
!! CCGTCATAGGCTTATTTTCG+AGG - chr5_3:33844833-33844852 Msa0808780:CDS 45.0%
!! ATAGGCTTATTTTCGAGGCC+TGG - chr5_3:33844838-33844857 Msa0808780:CDS 45.0%
! ATCAGGCCTTTAAAAAGGCC+AGG + chr5_3:33844864-33844883 None:intergenic 45.0%
ATAGGCTTTCAGGCTTCATC+AGG + chr5_3:33844881-33844900 None:intergenic 45.0%
!!! GTGCATTTTAGAGCCTAGCT+CGG + chr5_3:33845258-33845277 None:intergenic 45.0%
! GAGGCATCCTAATTCCTATG+TGG - chr5_3:33845400-33845419 Msa0808780:CDS 45.0%
TCCTATGTGGATGATCAACC+AGG - chr5_3:33845413-33845432 Msa0808780:CDS 45.0%
TCCTGGTTGATCATCCACAT+AGG + chr5_3:33845417-33845436 None:intergenic 45.0%
AGGCAGGTTGTCAAATAGGT+CGG + chr5_3:33845451-33845470 None:intergenic 45.0%
!! CTGTTGATGACAGTTGTTGC+TGG + chr5_3:33845968-33845987 None:intergenic 45.0%
! CACCCTGTAGAGGCATAATT+TGG + chr5_3:33846115-33846134 None:intergenic 45.0%
ATGTACAGAACACCCTGTAG+AGG + chr5_3:33846125-33846144 None:intergenic 45.0%
!!! CTTTTTGGGGCATTGGTTCT+TGG - chr5_3:33846164-33846183 Msa0808780:five_prime_UTR 45.0%
!!! TTTTGGGGCATTGGTTCTTG+GGG - chr5_3:33846166-33846185 Msa0808780:five_prime_UTR 45.0%
TAGTCGAGGCCAACACAACA+TGG - chr5_3:33837547-33837566 Msa0808780:three_prime_UTR 50.0%
AAACAGCTGTTCTGGCATGG+AGG - chr5_3:33837619-33837638 Msa0808780:three_prime_UTR 50.0%
TTCTGGCATGGAGGAGTTAC+CGG - chr5_3:33837628-33837647 Msa0808780:three_prime_UTR 50.0%
!! GCATGAGAGTACTCGTGGAA+TGG + chr5_3:33837693-33837712 None:intergenic 50.0%
GAGAGAAGAAGGGCCTTGAT+TGG + chr5_3:33837813-33837832 None:intergenic 50.0%
ACCGTTTCCGTTACTGAGGA+CGG - chr5_3:33838001-33838020 Msa0808780:intron 50.0%
! ACCGTCCTCAGTAACGGAAA+CGG + chr5_3:33838005-33838024 None:intergenic 50.0%
ACCAACACCGTCCTCAGTAA+CGG + chr5_3:33838011-33838030 None:intergenic 50.0%
!! TTACTGAGGACGGTGTTGGT+AGG - chr5_3:33838011-33838030 Msa0808780:intron 50.0%
GTGTTTGGAGGGGTTGAATG+AGG - chr5_3:33838162-33838181 Msa0808780:intron 50.0%
AGGGGTTGAATGAGGTTGTG+AGG - chr5_3:33838170-33838189 Msa0808780:intron 50.0%
GGGGTTGAATGAGGTTGTGA+GGG - chr5_3:33838171-33838190 Msa0808780:intron 50.0%
AAGCTTCTGTGAGGCAGAGT+AGG - chr5_3:33838215-33838234 Msa0808780:intron 50.0%
TGAGGCAGAGTAGGTTGTGT+AGG - chr5_3:33838224-33838243 Msa0808780:intron 50.0%
GAGGCAGAGTAGGTTGTGTA+GGG - chr5_3:33838225-33838244 Msa0808780:intron 50.0%
! GGTTTATGGGTTGTGGAGTG+AGG - chr5_3:33838246-33838265 Msa0808780:intron 50.0%
TTGTGGAGTGAGGTTGTTGG+TGG - chr5_3:33838256-33838275 Msa0808780:intron 50.0%
TTGGTGTGTGAGAGGCAATG+TGG - chr5_3:33838289-33838308 Msa0808780:intron 50.0%
TGTGTGAGAGGCAATGTGGT+AGG - chr5_3:33838293-33838312 Msa0808780:intron 50.0%
GTGTGAGAGGCAATGTGGTA+GGG - chr5_3:33838294-33838313 Msa0808780:intron 50.0%
GAGGCAATGTGGTAGGGTAT+TGG - chr5_3:33838300-33838319 Msa0808780:intron 50.0%
!! CATGGTGGATTGATGAACGG+GGG - chr5_3:33838328-33838347 Msa0808780:intron 50.0%
! GAACGGGGGTGGTTTGAAAT+TGG - chr5_3:33838342-33838361 Msa0808780:intron 50.0%
!! ATGAGGTGTTGGTGATGGGA+AGG - chr5_3:33838512-33838531 Msa0808780:intron 50.0%
!! GGTGATGGGAAGGAAGCTTA+TGG - chr5_3:33838522-33838541 Msa0808780:intron 50.0%
GGGAAGGAAGCTTATGGATC+AGG - chr5_3:33838528-33838547 Msa0808780:intron 50.0%
GGATCAGGTTTCTTGTGGCA+CGG - chr5_3:33838543-33838562 Msa0808780:intron 50.0%
GATCAGGTTTCTTGTGGCAC+GGG - chr5_3:33838544-33838563 Msa0808780:intron 50.0%
GGGTTGTTAATCCAGAGAGC+GGG - chr5_3:33838665-33838684 Msa0808780:intron 50.0%
GGTTGTTAATCCAGAGAGCG+GGG - chr5_3:33838666-33838685 Msa0808780:intron 50.0%
ACATCCGAGCCAAACCCAAT+TGG + chr5_3:33838703-33838722 None:intergenic 50.0%
!! TTGGGTTTGGCTCGGATGTA+TGG - chr5_3:33838704-33838723 Msa0808780:intron 50.0%
! GTGTTGCTGCGGGTTCTTAT+TGG - chr5_3:33838739-33838758 Msa0808780:intron 50.0%
CCAGTGTCTGGACATCAATC+CGG - chr5_3:33838909-33838928 Msa0808780:intron 50.0%
CTCGAGCAACTGACACAACT+TGG + chr5_3:33839064-33839083 None:intergenic 50.0%
CAAGTTGTGTCAGTTGCTCG+AGG - chr5_3:33839062-33839081 Msa0808780:intron 50.0%
GCCTGCAATTCGTGTTCTCT+CGG + chr5_3:33839102-33839121 None:intergenic 50.0%
GGCCATCTTGGTTGTATCAC+TGG - chr5_3:33839231-33839250 Msa0808780:CDS 50.0%
TGTTATCAAAGAGGCGACGC+GGG - chr5_3:33839402-33839421 Msa0808780:intron 50.0%
TGATCTGCCGTCCAAATCCA+TGG + chr5_3:33839479-33839498 None:intergenic 50.0%
CATCGGCAGTGTTTCACTTG+AGG - chr5_3:33839755-33839774 Msa0808780:intron 50.0%
! GAAGGAACTTTGTGCTGGTC+GGG + chr5_3:33839880-33839899 None:intergenic 50.0%
! TTTTGCGCCGAGAATTCCAC+AGG + chr5_3:33840064-33840083 None:intergenic 50.0%
GCCTAATATGTGTCTGGCAG+TGG - chr5_3:33840159-33840178 Msa0808780:intron 50.0%
GAAGCATGTGTGTGTGACTG+TGG - chr5_3:33840208-33840227 Msa0808780:intron 50.0%
TGTGTGTGTGACTGTGGTTC+TGG - chr5_3:33840214-33840233 Msa0808780:intron 50.0%
GTAGAAGTTAGTGCCCACCA+TGG - chr5_3:33840835-33840854 Msa0808780:intron 50.0%
GGATCAACCGCCACATATAG+TGG - chr5_3:33840856-33840875 Msa0808780:intron 50.0%
ACCGCCACATATAGTGGTGA+TGG - chr5_3:33840862-33840881 Msa0808780:intron 50.0%
GCCATCACCACTATATGTGG+CGG + chr5_3:33840866-33840885 None:intergenic 50.0%
!! GCCACATATAGTGGTGATGG+CGG - chr5_3:33840865-33840884 Msa0808780:intron 50.0%
!! ACATATAGTGGTGATGGCGG+CGG - chr5_3:33840868-33840887 Msa0808780:intron 50.0%
!!! GTCTGTGACTGTGGTTTTGG+TGG + chr5_3:33840961-33840980 None:intergenic 50.0%
!! CAATGGGAAAGCGTCCTGAA+AGG + chr5_3:33841732-33841751 None:intergenic 50.0%
CTTTCAGGACGCTTTCCCAT+TGG - chr5_3:33841730-33841749 Msa0808780:intron 50.0%
GGGACTCATCCCCAAAATAG+TGG - chr5_3:33841805-33841824 Msa0808780:intron 50.0%
TTTCCCACCTTCAGCTATGC+AGG - chr5_3:33842145-33842164 Msa0808780:intron 50.0%
! TGGCGGAGGCATATTTGTCT+GGG - chr5_3:33842464-33842483 Msa0808780:intron 50.0%
CGCCAAACCGCCATTTGATT+TGG - chr5_3:33842820-33842839 Msa0808780:intron 50.0%
CGCCAAATCAAATGGCGGTT+TGG + chr5_3:33842825-33842844 None:intergenic 50.0%
TTGGCGGTAATGACCACTAC+AGG - chr5_3:33842839-33842858 Msa0808780:intron 50.0%
AGGATAGACTTCGTCTCTCC+AGG + chr5_3:33843179-33843198 None:intergenic 50.0%
TGGAGAGACGAAGTCTATCC+TGG - chr5_3:33843178-33843197 Msa0808780:intron 50.0%
TCCTGGCTATTACTGCCAGT+AGG - chr5_3:33843195-33843214 Msa0808780:intron 50.0%
CCTGGCTATTACTGCCAGTA+GGG - chr5_3:33843196-33843215 Msa0808780:intron 50.0%
TACTGCCAGTAGGGATTTGC+TGG - chr5_3:33843205-33843224 Msa0808780:intron 50.0%
TGCAACCAGCAAATCCCTAC+TGG + chr5_3:33843213-33843232 None:intergenic 50.0%
GAACTGACCGTCAACGCATT+TGG - chr5_3:33844541-33844560 Msa0808780:CDS 50.0%
GCTGTCACAACAGAACTGGA+AGG + chr5_3:33844574-33844593 None:intergenic 50.0%
TGCTTTGTGTTGCATAGGGG+TGG - chr5_3:33844728-33844747 Msa0808780:CDS 50.0%
GTGTTGCATAGGGGTGGAAA+TGG - chr5_3:33844734-33844753 Msa0808780:CDS 50.0%
!! CCTATGACGGGTAATAGGTC+AGG + chr5_3:33844823-33844842 None:intergenic 50.0%
CCTGACCTATTACCCGTCAT+AGG - chr5_3:33844820-33844839 Msa0808780:CDS 50.0%
TGAAGACACACTGGGCACTC+CGG + chr5_3:33837650-33837669 None:intergenic 55.0%
GCGGGGCAACGAATTGTGTT+TGG + chr5_3:33837764-33837783 None:intergenic 55.0%
!! GTAACGGAAACGGTGTCGTG+TGG + chr5_3:33837995-33838014 None:intergenic 55.0%
CGACACCGTTTCCGTTACTG+AGG - chr5_3:33837997-33838016 Msa0808780:intron 55.0%
TCCGTTACTGAGGACGGTGT+TGG - chr5_3:33838007-33838026 Msa0808780:intron 55.0%
GAGGTTGTGAGGGAAGGGTT+AGG - chr5_3:33838181-33838200 Msa0808780:intron 55.0%
GGGTTGTGGAGTGAGGTTGT+TGG - chr5_3:33838253-33838272 Msa0808780:intron 55.0%
TATCTCGAATCCCCGCTCTC+TGG + chr5_3:33838679-33838698 None:intergenic 55.0%
! TGGCTCGGATGTATGGTCGT+TGG - chr5_3:33838711-33838730 Msa0808780:intron 55.0%
!! CGTTGGCTTGTGTGTTGCTG+CGG - chr5_3:33838728-33838747 Msa0808780:intron 55.0%
!! GTTGGCTTGTGTGTTGCTGC+GGG - chr5_3:33838729-33838748 Msa0808780:intron 55.0%
GCAGACTCTTTGCCAGTGTC+TGG - chr5_3:33838897-33838916 Msa0808780:intron 55.0%
CCGGATTGATGTCCAGACAC+TGG + chr5_3:33838912-33838931 None:intergenic 55.0%
GCCGAGAGAACACGAATTGC+AGG - chr5_3:33839098-33839117 Msa0808780:intron 55.0%
!! GTGTGTGACTGTGGTTCTGG+TGG - chr5_3:33840217-33840236 Msa0808780:intron 55.0%
TGTGGCGGTTGATCCATGGT+GGG + chr5_3:33840851-33840870 None:intergenic 55.0%
ATGTGGCGGTTGATCCATGG+TGG + chr5_3:33840852-33840871 None:intergenic 55.0%
GCCGCCATCACCACTATATG+TGG + chr5_3:33840869-33840888 None:intergenic 55.0%
GCGGCGATGGTAGTAGTTAC+AGG - chr5_3:33840887-33840906 Msa0808780:intron 55.0%
GAAGCGTGTGTCTGTGACTG+TGG + chr5_3:33840970-33840989 None:intergenic 55.0%
TGTCCGTGTATGGTCCTTGC+AGG - chr5_3:33841440-33841459 Msa0808780:intron 55.0%
ATAAGTGGTGACAGTGGCGG+AGG - chr5_3:33842450-33842469 Msa0808780:intron 55.0%
! GTGGCGGAGGCATATTTGTC+TGG - chr5_3:33842463-33842482 Msa0808780:intron 55.0%
! GGCGGAGGCATATTTGTCTG+GGG - chr5_3:33842465-33842484 Msa0808780:intron 55.0%
! GCGGAGGCATATTTGTCTGG+GGG - chr5_3:33842466-33842485 Msa0808780:intron 55.0%
GGGATGGAACCGTTCGATTG+TGG - chr5_3:33843108-33843127 Msa0808780:intron 55.0%
!! ATAGCCCGTTGGTGGTGCTA+GGG - chr5_3:33843144-33843163 Msa0808780:intron 55.0%
TCTTCCCCTAGCACCACCAA+CGG + chr5_3:33843152-33843171 None:intergenic 55.0%
GTGCTAGGGGAAGATCTTCC+TGG - chr5_3:33843158-33843177 Msa0808780:intron 55.0%
CCCTACTGGCAGTAATAGCC+AGG + chr5_3:33843199-33843218 None:intergenic 55.0%
! CATAGGGGTGGAAATGGGCT+AGG - chr5_3:33844740-33844759 Msa0808780:CDS 55.0%
GGCTTAGGCCTTACAAAGCC+CGG + chr5_3:33844771-33844790 None:intergenic 55.0%
! GGCTTTGTAAGGCCTAAGCC+TGG - chr5_3:33844771-33844790 Msa0808780:CDS 55.0%
ACGGGTAATAGGTCAGGCTC+AGG + chr5_3:33844817-33844836 None:intergenic 55.0%
!! CTTATTTTCGAGGCCTGGCC+TGG - chr5_3:33844843-33844862 Msa0808780:CDS 55.0%
!! GCCTGGCCTGGCCTTTTTAA+AGG - chr5_3:33844855-33844874 Msa0808780:CDS 55.0%
! GCCTTTAAAAAGGCCAGGCC+AGG + chr5_3:33844859-33844878 None:intergenic 55.0%
ATGCTCGGCTTCCAGAGTTC+TGG - chr5_3:33846051-33846070 Msa0808780:CDS 55.0%
!! TGGCCGCATGAGAGTACTCG+TGG + chr5_3:33837698-33837717 None:intergenic 60.0%
!! GGTGGATTGATGAACGGGGG+TGG - chr5_3:33838331-33838350 Msa0808780:intron 60.0%
AAAGAGGCGACGCGGGCTTA+AGG - chr5_3:33839409-33839428 Msa0808780:intron 60.0%
!! CATAGCCCGTTGGTGGTGCT+AGG - chr5_3:33843143-33843162 Msa0808780:intron 60.0%
!! TAGCCCGTTGGTGGTGCTAG+GGG - chr5_3:33843145-33843164 Msa0808780:intron 60.0%
CTTCCCCTAGCACCACCAAC+GGG + chr5_3:33843151-33843170 None:intergenic 60.0%
AGGCCTTACAAAGCCCGGCT+CGG + chr5_3:33844766-33844785 None:intergenic 60.0%
GCCTATTAAGCTCGTCGGGC+CGG + chr5_3:33845150-33845169 None:intergenic 60.0%
TAAACGAGCTGGGCCGAGCT+AGG - chr5_3:33845242-33845261 Msa0808780:CDS 60.0%
!! GGAAATGGGCTAGGCCGAGC+CGG - chr5_3:33844749-33844768 Msa0808780:CDS 65.0%
!! GAAATGGGCTAGGCCGAGCC+GGG - chr5_3:33844750-33844769 Msa0808780:CDS 65.0%
! AGGCCGAGCCGGGCTTTGTA+AGG - chr5_3:33844760-33844779 Msa0808780:CDS 65.0%
GCCGGCCCGACGAGCTTAAT+AGG - chr5_3:33845146-33845165 Msa0808780:CDS 65.0%
!! AGTGGTGATGGCGGCGGCGA+TGG - chr5_3:33840874-33840893 Msa0808780:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 33837519 33846269 33837519 ID=Msa0808780;Name=Msa0808780
chr5_3 mRNA 33837519 33846269 33837519 ID=Msa0808780-mRNA-1;Parent=Msa0808780;Name=Msa0808780-mRNA-1;_AED=0.07;_eAED=0.07;_QI=116|1|1|1|0.83|0.85|7|316|820
chr5_3 exon 33837519 33837852 33837519 ID=Msa0808780-mRNA-1:exon:10855;Parent=Msa0808780-mRNA-1
chr5_3 exon 33839140 33839268 33839140 ID=Msa0808780-mRNA-1:exon:10854;Parent=Msa0808780-mRNA-1
chr5_3 exon 33840270 33840389 33840270 ID=Msa0808780-mRNA-1:exon:10853;Parent=Msa0808780-mRNA-1
chr5_3 exon 33840532 33840768 33840532 ID=Msa0808780-mRNA-1:exon:10852;Parent=Msa0808780-mRNA-1
chr5_3 exon 33841153 33841422 33841153 ID=Msa0808780-mRNA-1:exon:10851;Parent=Msa0808780-mRNA-1
chr5_3 exon 33842327 33842382 33842327 ID=Msa0808780-mRNA-1:exon:10850;Parent=Msa0808780-mRNA-1
chr5_3 exon 33844521 33846269 33844521 ID=Msa0808780-mRNA-1:exon:10849;Parent=Msa0808780-mRNA-1
chr5_3 five_prime_UTR 33846154 33846269 33846154 ID=Msa0808780-mRNA-1:five_prime_utr;Parent=Msa0808780-mRNA-1
chr5_3 CDS 33844521 33846153 33844521 ID=Msa0808780-mRNA-1:cds;Parent=Msa0808780-mRNA-1
chr5_3 CDS 33842327 33842382 33842327 ID=Msa0808780-mRNA-1:cds;Parent=Msa0808780-mRNA-1
chr5_3 CDS 33841153 33841422 33841153 ID=Msa0808780-mRNA-1:cds;Parent=Msa0808780-mRNA-1
chr5_3 CDS 33840532 33840768 33840532 ID=Msa0808780-mRNA-1:cds;Parent=Msa0808780-mRNA-1
chr5_3 CDS 33840270 33840389 33840270 ID=Msa0808780-mRNA-1:cds;Parent=Msa0808780-mRNA-1
chr5_3 CDS 33839140 33839268 33839140 ID=Msa0808780-mRNA-1:cds;Parent=Msa0808780-mRNA-1
chr5_3 CDS 33837835 33837852 33837835 ID=Msa0808780-mRNA-1:cds;Parent=Msa0808780-mRNA-1
chr5_3 three_prime_UTR 33837519 33837834 33837519 ID=Msa0808780-mRNA-1:three_prime_utr;Parent=Msa0808780-mRNA-1
Gene Sequence

>Msa0808780

ATGGAGGAGTTACCGGAGTGCCCAGTGTGTCTTCAAAATTACGACGACGAAAACGCCATTCCACGAGTACTCTCATGCGGCCACACTATTTGCGAAGCTTGTCTTGTACATCTTCCACCGCGTTTTCCAAACACAATTCGTTGCCCCGCTTGTACTCAACTCGTTAAATACTCTCCCAATCAAGGCCCTTCTTCTCTCCCTAAAAACATCGATCTTCTCAGAATCTCCCTTCAACAACCACAACACTCTTCTTCATCACAAAAATCTAATCAACGGTCCTCAATCAACGGTGAATATGCTTATTCCTCTAAATTCTGGTCTGATGAGTTTTACGCTGCTTGGAAGGATTGGATTCTTCCACACGACACCGTTTCCGTTACTGAGGACGGTGTTGGTAGGTTTAATTCGAGTTCTAAAGGTAGGGTTTGTTTTGGAGTTAACCGTACGGTGAGTTTAACTCCGATCATTACTTTGTCTCCGGTTACCGATTCGAAGTTTAAGTTTAGTTATGTTGCTTGGGTTATCAAGTGTTTGGAGGGGTTGAATGAGGTTGTGAGGGAAGGGTTAGGTTTGATTCTAGAAGCTTCTGTGAGGCAGAGTAGGTTGTGTAGGGTTTATGGGTTGTGGAGTGAGGTTGTTGGTGGTAGTCTGTATTTGGTGTGTGAGAGGCAATGTGGTAGGGTATTGGAGAAACATGGTGGATTGATGAACGGGGGTGGTTTGAAATTGGATAAAGATGGGTTTTTTAGTTTTGGAATGATTGCTAAGGGAGTTATTGAAGCAGTGATTGCTTTGAATTTGGAAGGTTTGGTTGCTGGATGTTTGGGAATTTCGTGTTTCTATTTTGACGAGCTTGGTGGGGTTTGTATTGATTTGAATGAGGTGTTGGTGATGGGAAGGAAGCTTATGGATCAGGTTTCTTGTGGCACGGGTGATGAACCATCACACGAATCAATGTGTACGGAATGTTTGGATCTAGAGAATGAGCTTTTTGTTAGCCCTGAGGTTTTGTCTAAGTTTTTGAACAAGAGGGTTGTTAATCCAGAGAGCGGGGATTCGAGATATCCAATTGGGTTTGGCTCGGATGTATGGTCGTTGGCTTGTGTGTTGCTGCGGGTTCTTATTGGAAACAAACTCCCTCGGATTACCTTTGAAATGAGTGAAGGGATTGGTCTTGATGTTTCGGCTAGTTATATTTCTTGGGTGGAGAAAGTTAGTTTTGTTTTGGAAGAAAAAATTGGCTCTGAATACCTATCACTTAAGCAGACTCTTTGCCAGTGTCTGGACATCAATCCGGAAAATCGTTCAGATGTTGTGGATGTAAGGAAATCCATTCAGGATTTGTTAGTCAAACACCAATTTGTGTTTTTGGGTGATTCGGAGCTTACGGTAAATAGGAACAACACAGGTCACACCGTAATTCTTGCCAAGTTGTGTCAGTTGCTCGAGGAAAGTTCTAAGGAGCCGAGAGAACACGAATTGCAGGCAAAAGAAGATGGTGGTCAACCTGATATTCTTCAGAGTGTGGAGAATATATCTGATGAAGACTTCACTGCTAGCTTATCTAAAGGAATGATTGAGCTTAAAGATCTGCAAGGCCATCTTGGTTGTATCACTGGATTAGCTGTAGGAGGGGGATATCTGTTTAGCTCCTCTTTTGATAAAACTGTCCGTGTATGGTCCTTGCAGGACTTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTTGATGACGAAGAACAATTGTGTATAAGTGGTGACAGTGGCGGAGGCATATTTGTCTGGGGGATTGATGCACCTCTTAGTCAAGATCCCTTGAGGAAATGGTATGAGAAGAAGGATTGGCGCTTTAGTGGTATCCATTCCTTGACTGCTTTTGGAAATCTTCTCTACACTGGAAGTGGAGATAGAACAATCAAAGCTTGGTCATTGAAGGATGGAACTTTGATGTGCACAATGGATGGCCACAAATCTGTAGTTTCCACACTTTCAGTATGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCGTTCGATTGTGGAGTCTTAATGATCATAGCCCGTTGGTGGTGCTAGGGGAAGATCTTCCTGGAGAGACGAAGTCTATCCTGGCTATTACTGCCAGTAGGGATTTGCTGGTTGCAGCATATGAGAATGGTTGCATAAAGGTCTGGAGAAATGACGTGTTCCTGAGTTCCAAAACATTGCATAATGGTGCCATTTTTGCTATGAGTCTGCAGGGAAAATGGCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCAGGAGATGAGTTAGAACTGACCGTCAACGCATTTGGATCCATTCCTTCCAGTTCTGTTGTGACAGCTATGTTATGCAGCCAAGGAAAACTTTATATTGGATATGGTGACAAGTCTATTAAGGTTTATCGTGCTAAATAG
Protein sequence

>Msa0808780

MEELPECPVCLQNYDDENAIPRVLSCGHTICEACLVHLPPRFPNTIRCPACTQLVKYSPNQGPSSLPKNIDLLRISLQQPQHSSSSQKSNQRSSINGEYAYSSKFWSDEFYAAWKDWILPHDTVSVTEDGVGRFNSSSKGRVCFGVNRTVSLTPIITLSPVTDSKFKFSYVAWVIKCLEGLNEVVREGLGLILEASVRQSRLCRVYGLWSEVVGGSLYLVCERQCGRVLEKHGGLMNGGGLKLDKDGFFSFGMIAKGVIEAVIALNLEGLVAGCLGISCFYFDELGGVCIDLNEVLVMGRKLMDQVSCGTGDEPSHESMCTECLDLENELFVSPEVLSKFLNKRVVNPESGDSRYPIGFGSDVWSLACVLLRVLIGNKLPRITFEMSEGIGLDVSASYISWVEKVSFVLEEKIGSEYLSLKQTLCQCLDINPENRSDVVDVRKSIQDLLVKHQFVFLGDSELTVNRNNTGHTVILAKLCQLLEESSKEPREHELQAKEDGGQPDILQSVENISDEDFTASLSKGMIELKDLQGHLGCITGLAVGGGYLFSSSFDKTVRVWSLQDFSHLHTFRGHENKVMALVYVDDEEQLCISGDSGGGIFVWGIDAPLSQDPLRKWYEKKDWRFSGIHSLTAFGNLLYTGSGDRTIKAWSLKDGTLMCTMDGHKSVVSTLSVCDEVLYSGSWDGTVRLWSLNDHSPLVVLGEDLPGETKSILAITASRDLLVAAYENGCIKVWRNDVFLSSKTLHNGAIFAMSLQGKWLYTGGWDKNVNIQELSGDELELTVNAFGSIPSSSVVTAMLCSQGKLYIGYGDKSIKVYRAK*